Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 134 of 345
Found at i:36254770 original size:27 final size:27
Alignment explanation
Indices: 36254696--36254838 Score: 119
Period size: 27 Copynumber: 5.3 Consensus size: 27
36254686 CAAAACAGTC
* * * *
36254696 ATTTTACCCTACAAGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATTTCGATA
*
36254723 ATTTTACACTAGAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
*
36254750 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* * * * *
36254777 ATTTTCCAAGT-CGAGGGTGTTTCGGTA
1 ATTTTAC-ACTACAAGGGTATTTCGATA
* * *
36254804 ATTTCACA-AATCAGGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGATA
*
36254831 AATTTACA
1 ATTTTACA
36254839 AATCGAGGGT
Statistics
Matches: 91, Mismatches: 22, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
26 1 0.01
27 88 0.97
28 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:36254839 original size:27 final size:27
Alignment explanation
Indices: 36254736--36254941 Score: 183
Period size: 27 Copynumber: 7.7 Consensus size: 27
36254726 TTACACTAGA
* *
36254736 AGGGTATTTCGATAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
* * *
36254763 AGGGTATTTTGATAATTTTCCAAGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
36254790 AGGGTGTTTCGGTAATTTCACAAATC-
1 AGGGTATTTCGATAATTTTACAAATCG
*
36254816 AGGGGTATTTCGATAAATTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
36254844 AGGGTATTTC-ACTAA-TTT-CATAATCG
1 AGGGTATTTCGA-TAATTTTACA-AATCG
* *
36254870 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
36254897 GGGGT-TCTTTGAGAATTTTACAAATCG
1 AGGGTAT-TTCGATAATTTTACAAATCG
36254924 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
36254942 CTCTTTATTA
Statistics
Matches: 146, Mismatches: 22, Indels: 22
0.77 0.12 0.12
Matches are distributed among these distances:
25 2 0.01
26 24 0.16
27 114 0.78
28 6 0.04
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:36254917 original size:80 final size:80
Alignment explanation
Indices: 36254787--36254942 Score: 224
Period size: 80 Copynumber: 1.9 Consensus size: 80
36254777 ATTTTCCAAG
* *
36254787 TCGAGGGTGTTTCGGTAATTTCACAAATCAGGGGTATTTCGATAAATTTACAAATCGAGGGTATT
1 TCGAGGGTATTTCGGTAATTTCACAAATCAGGGGTATTTCGAGAAATTTACAAATCGAGGGTATT
36254852 TCACTAATTTCATAA
66 TCACTAATTTCATAA
* * * * *
36254867 TCGAGGGTATTTTGGTAATTTTACAAATCGGGGGT-TCTTTGAGAATTTTACAAATCGAGGGTAT
1 TCGAGGGTATTTCGGTAATTTCACAAATCAGGGGTAT-TTCGAGAAATTTACAAATCGAGGGTAT
*
36254931 TTCAGTAATTTC
65 TTCACTAATTTC
36254943 TCTTTATTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.01
80 66 0.99
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (80 bp):
TCGAGGGTATTTCGGTAATTTCACAAATCAGGGGTATTTCGAGAAATTTACAAATCGAGGGTATT
TCACTAATTTCATAA
Found at i:36258207 original size:27 final size:26
Alignment explanation
Indices: 36258134--36258222 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
36258124 TAAAATAGTT
* * * *
36258134 ATTTTACCCTACAGGGGTATGTCGGTC
1 ATTTTACACTACA-AGGTATTTCGGTA
* *
36258161 GTTTTACACTATAAGAGTATTTCGGTA
1 ATTTTACACTACAAG-GTATTTCGGTA
*
36258188 ATTTTACACTACAACGGTATTTCGATA
1 ATTTTACACTACAA-GGTATTTCGGTA
36258215 ATTTTACA
1 ATTTTACA
36258223 AATCGAGGGT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.02
27 49 0.96
28 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (26 bp):
ATTTTACACTACAAGGTATTTCGGTA
Found at i:36258237 original size:27 final size:27
Alignment explanation
Indices: 36258177--36258433 Score: 202
Period size: 27 Copynumber: 9.6 Consensus size: 27
36258167 CACTATAAGA
* * * *
36258177 GTATTTCGGTAATTTTAC-ACTACAACG
1 GTATTTCGATAATTTTACAAAT-CGAGG
36258204 GTATTTCGATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * *
36258231 GTGTTTCTG-TAATTTTATAATTCGAGG
1 GTATTTC-GATAATTTTACAAATCGAGG
* * * *
36258258 GTGTTTTGGTAATTTTACCAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * * *
36258285 GTATTTTGATAATTTCACAAATTGGGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * * *
36258312 GTATTTCGGTAATTATAAAAATCGTGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * *
36258339 GTATATC-AGTAATTTCAC-AATTGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
*
36258365 GTATTTCGATAATTTTACAAATTG-GG
1 GTATTTCGATAATTTTACAAATCGAGG
* *
36258391 GTTACTTCGGTAATTTTACAAATCGAGG
1 G-TATTTCGATAATTTTACAAATCGAGG
36258419 GTATTTC-AGTAATTT
1 GTATTTCGA-TAATTT
36258434 CTCTTTACTA
Statistics
Matches: 183, Mismatches: 38, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
26 24 0.13
27 153 0.84
28 6 0.03
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
GTATTTCGATAATTTTACAAATCGAGG
Found at i:36258271 original size:54 final size:53
Alignment explanation
Indices: 36258203--36258433 Score: 223
Period size: 54 Copynumber: 4.3 Consensus size: 53
36258193 ACACTACAAC
* * * *
36258203 GGTATTTCGATAATTTTACAAATCGAGGGTGTTTCTGTAATTTTATAATTCGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCTGTAATTTCACAATT-GAG
* * * *
36258257 GGTGTTTTGGTAATTTTACCAATCGAGGGTATTT-TGATAATTTCACAAATTGGG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCTG-TAATTTCAC-AATTGAG
* * * * *
36258311 GGTATTTCGGTAATTATAAAAATCGTGGGTATATCAGTAATTTCACAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCTGTAATTTCACAATTGAG
* * * * * *
36258364 GGTATTTCGATAATTTTACAAATTG-GGGTTACTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGG-TATTTCTGTAATTTCAC-AATTGAG
*
36258418 GGTATTTCAGTAATTT
1 GGTATTTCGGTAATTT
36258434 CTCTTTACTA
Statistics
Matches: 144, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
52 3 0.02
53 42 0.29
54 94 0.65
55 5 0.03
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCTGTAATTTCACAATTGAG
Found at i:36258385 original size:80 final size:81
Alignment explanation
Indices: 36258203--36258434 Score: 286
Period size: 80 Copynumber: 2.9 Consensus size: 81
36258193 ACACTACAAC
* * * * * * * **
36258203 GGTATTTCGATAATTTTACAAATCGAGGGTGTTTCTGTAATTTTATAATTCGAGGGTGTTTTGGT
1 GGTATTTCGATAATTTTACAAATTGGGGGTATTTCGGTAATTTTAAAAATCGAGGGTATTTCAGT
*
36258268 AATTTTACCAATCGAG
66 AATTTCACCAATCGAG
* * * * *
36258284 GGTATTTTGATAATTTCACAAATTGGGGGTATTTCGGTAATTATAAAAATCGTGGGTATATCAGT
1 GGTATTTCGATAATTTTACAAATTGGGGGTATTTCGGTAATTTTAAAAATCGAGGGTATTTCAGT
*
36258349 AATTTCA-CAATTGAG
66 AATTTCACCAATCGAG
* * *
36258364 GGTATTTCGATAATTTTACAAATTGGGGTTACTTCGGTAATTTTACAAATCGAGGGTATTTCAGT
1 GGTATTTCGATAATTTTACAAATTGGGGGTATTTCGGTAATTTTAAAAATCGAGGGTATTTCAGT
36258429 AATTTC
66 AATTTC
36258435 TCTTTACTAT
Statistics
Matches: 127, Mismatches: 24, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
80 70 0.55
81 57 0.45
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
GGTATTTCGATAATTTTACAAATTGGGGGTATTTCGGTAATTTTAAAAATCGAGGGTATTTCAGT
AATTTCACCAATCGAG
Found at i:36258836 original size:28 final size:28
Alignment explanation
Indices: 36258775--36258838 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
36258765 CACATGGCTG
* * *
36258775 ATCAGACCCAATTACATTCATATGACCC
1 ATCAGGCCCAATCAAATTCATATGACCC
*
36258803 ATCAGGCCCAATCAAATTCATATGGCCC
1 ATCAGGCCCAATCAAATTCATATGACCC
36258831 ATCAGGCC
1 ATCAGGCC
36258839 AAAATACTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.33, C:0.33, G:0.12, T:0.22
Consensus pattern (28 bp):
ATCAGGCCCAATCAAATTCATATGACCC
Found at i:36260944 original size:27 final size:27
Alignment explanation
Indices: 36260870--36260955 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 27
36260860 CAAAACAATC
* * * *
36260870 ATTTTACCCTACAGGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATTTCGGTA
* * *
36260897 TTTTTACACTAGAAGGGTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
**
36260924 ATTTTACACTACAAGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTTCGGTA
36260951 ATTTT
1 ATTTT
36260956 CCAAATCGAG
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:36260993 original size:26 final size:26
Alignment explanation
Indices: 36260937--36261089 Score: 150
Period size: 27 Copynumber: 5.7 Consensus size: 26
36260927 TTACACTACA
*
36260937 AGGGTATTTCAATAATTTTCCAAATCG
1 AGGGTATTTCGATAA-TTTCCAAATCG
*
36260964 AGGGTGTTTCGATAATTTCACAAATC-
1 AGGGTATTTCGATAATTTC-CAAATCG
*
36260990 AGGGGTATTTCGATAAATTTACAAATCG
1 A-GGGTATTTCGAT-AATTTCCAAATCG
* *
36261018 AGGGTATTTC-ACTAATCTCCCAATCG
1 AGGGTATTTCGA-TAATTTCCAAATCG
** *
36261044 AGGGTATTTCGATAATTTTAAAAATTG
1 AGGGTATTTCGATAA-TTTCCAAATCG
36261071 AGGGTATTTCTG-TAATTTC
1 AGGGTATTTC-GATAATTTC
36261090 TCTTTATTAT
Statistics
Matches: 105, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
26 32 0.30
27 66 0.63
28 7 0.07
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTCCAAATCG
Found at i:36261056 original size:53 final size:53
Alignment explanation
Indices: 36260937--36261080 Score: 175
Period size: 53 Copynumber: 2.7 Consensus size: 53
36260927 TTACACTACA
* * * *
36260937 AGGGTATTTCAATAATTTTCCAAATCGAGGGTGTTTCGATAATTTCACAAATC
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATCTCACAAATC
* *
36260990 AGGGGTATTTCGATAAATTTACAAATCGAGGGTATTTC-ACTAATCTC-CCAATC
1 A-GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGA-TAATCTCACAAATC
* *
36261043 GAGGGTATTTCGATAATTTTAAAAATTGAGGGTATTTC
1 -AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTC
36261081 TGTAATTTCT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
53 40 0.51
54 39 0.49
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATCTCACAAATC
Found at i:36264154 original size:40 final size:39
Alignment explanation
Indices: 36263989--36264172 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
36263979 AAATTGAATG
* * *
36263989 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
36264029 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36264069 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
36264109 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36264148 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36264173 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36264197 original size:80 final size:81
Alignment explanation
Indices: 36264029--36264217 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
36264019 GCTGGAAATT
* * * *
36264029 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
36264094 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
36264110 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
36264173 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
36264189 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
36264218 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:36272273 original size:40 final size:39
Alignment explanation
Indices: 36272108--36272291 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
36272098 AAATTGAATG
* * *
36272108 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
36272148 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36272188 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
36272228 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36272267 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36272292 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36272316 original size:80 final size:81
Alignment explanation
Indices: 36272148--36272336 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
36272138 GCTGGAAATT
* * * *
36272148 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
36272213 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
36272229 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
36272292 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
36272308 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
36272337 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:36292567 original size:15 final size:14
Alignment explanation
Indices: 36292547--36292594 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
36292537 AGGAGAGAAT
*
36292547 GATGAATGAGTAAGG
1 GATGAAGGA-TAAGG
*
36292562 GATGAAGGATGAGG
1 GATGAAGGATAAGG
* *
36292576 GATGAGGGATGAGG
1 GATGAAGGATAAGG
36292590 GATGA
1 GATGA
36292595 TTAGAAAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 22 0.73
15 8 0.27
ACGTcount: A:0.35, C:0.00, G:0.48, T:0.17
Consensus pattern (14 bp):
GATGAAGGATAAGG
Found at i:36292571 original size:7 final size:7
Alignment explanation
Indices: 36292559--36292594 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
36292549 TGAATGAGTA
36292559 AGGGATG
1 AGGGATG
*
36292566 AAGGATG
1 AGGGATG
36292573 AGGGATG
1 AGGGATG
36292580 AGGGATG
1 AGGGATG
36292587 AGGGATG
1 AGGGATG
36292594 A
1 A
36292595 TTAGAAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.53, T:0.14
Consensus pattern (7 bp):
AGGGATG
Found at i:36294580 original size:56 final size:56
Alignment explanation
Indices: 36294494--36294677 Score: 217
Period size: 56 Copynumber: 3.3 Consensus size: 56
36294484 AACTTGTGAG
* *
36294494 GAAAGAATAAGTCTTTATGGAAAATTATGAAAGAATAAGCCTTTATGGTGAACTAT
1 GAAAGAATAAGCCTTTATGGAAAATTATGAAAGAATAAGCCTTTATGGTGAATTAT
* * * * *
36294550 GAAAGAATAAGTCTTTATTGAAAATTATGAAAGAATAAGCCTTTGTGGCGAATTGT
1 GAAAGAATAAGCCTTTATGGAAAATTATGAAAGAATAAGCCTTTATGGTGAATTAT
* ** * ** *
36294606 GAAGGAATAAGCCTTTGA-GGCGAACTATGATGGAATAAGCCTTTTTGGTGAATTAT
1 GAAAGAATAAGCCTTT-ATGGAAAATTATGAAAGAATAAGCCTTTATGGTGAATTAT
*
36294662 GAAGGAATAAGCCTTT
1 GAAAGAATAAGCCTTT
36294678 GTGGTGGACT
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
56 110 0.99
57 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (56 bp):
GAAAGAATAAGCCTTTATGGAAAATTATGAAAGAATAAGCCTTTATGGTGAATTAT
Found at i:36294635 original size:84 final size:84
Alignment explanation
Indices: 36294494--36294681 Score: 227
Period size: 84 Copynumber: 2.2 Consensus size: 84
36294484 AACTTGTGAG
* * *
36294494 GAAAGAATAAGTCTTTATGGAAAATTATGAAAGAATAAGCCTTTATGGTGAACTATGAAAGAATA
1 GAAAGAATAAGCCTTTGTGGAAAATTATGAAAGAATAAGCCTTTATGGCGAACTATGAAAGAATA
*
36294559 AGTCTTTATT-GAAAATTAT
66 AGCCTTT-TTGGAAAATTAT
** * * **
36294578 GAAAGAATAAGCCTTTGTGGCGAATTGTGAAGGAATAAGCCTTTGA-GGCGAACTATGATGGAAT
1 GAAAGAATAAGCCTTTGTGGAAAATTATGAAAGAATAAGCCTTT-ATGGCGAACTATGAAAGAAT
**
36294642 AAGCCTTTTTGGTGAATTAT
65 AAGCCTTTTTGGAAAATTAT
*
36294662 GAAGGAATAAGCCTTTGTGG
1 GAAAGAATAAGCCTTTGTGG
36294682 TGGACTCCGT
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
83 2 0.02
84 86 0.97
85 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (84 bp):
GAAAGAATAAGCCTTTGTGGAAAATTATGAAAGAATAAGCCTTTATGGCGAACTATGAAAGAATA
AGCCTTTTTGGAAAATTAT
Found at i:36294682 original size:28 final size:28
Alignment explanation
Indices: 36294494--36294683 Score: 193
Period size: 28 Copynumber: 6.8 Consensus size: 28
36294484 AACTTGTGAG
* **
36294494 GAAAGAATAAGTCTTTATGGAAAATTAT
1 GAAAGAATAAGCCTTTATGGTGAATTAT
*
36294522 GAAAGAATAAGCCTTTATGGTGAACTAT
1 GAAAGAATAAGCCTTTATGGTGAATTAT
* * **
36294550 GAAAGAATAAGTCTTTATTGAAAATTAT
1 GAAAGAATAAGCCTTTATGGTGAATTAT
* * *
36294578 GAAAGAATAAGCCTTTGTGGCGAATTGT
1 GAAAGAATAAGCCTTTATGGTGAATTAT
* * *
36294606 GAAGGAATAAGCCTTTGA-GGCGAACTAT
1 GAAAGAATAAGCCTTT-ATGGTGAATTAT
** *
36294634 GATGGAATAAGCCTTTTTGGTGAATTAT
1 GAAAGAATAAGCCTTTATGGTGAATTAT
* *
36294662 GAAGGAATAAGCCTTTGTGGTG
1 GAAAGAATAAGCCTTTATGGTG
36294684 GACTCCGTAT
Statistics
Matches: 135, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
28 135 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (28 bp):
GAAAGAATAAGCCTTTATGGTGAATTAT
Found at i:36300737 original size:46 final size:46
Alignment explanation
Indices: 36300681--36300949 Score: 230
Period size: 46 Copynumber: 5.8 Consensus size: 46
36300671 TGGTTGAGCA
** * *
36300681 TCCGAACTCGTTGAGTTGAGTTTGAGTTCATTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* *
36300727 TCCGAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--AGG
* * *
36300772 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* *
36300820 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--AGG
* * *
36300865 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * * *
36300913 CCCGAGCTCGTTGAGTTGAGTTCGAGTACACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36300950 GCGGGTTACA
Statistics
Matches: 182, Mismatches: 23, Indels: 36
0.76 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 15 0.08
44 1 0.01
45 4 0.02
46 87 0.48
47 54 0.30
48 4 0.02
49 1 0.01
50 14 0.08
51 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
Found at i:36300837 original size:93 final size:93
Alignment explanation
Indices: 36300678--36300939 Score: 425
Period size: 93 Copynumber: 2.8 Consensus size: 93
36300668 GGATGGTTGA
* ** *
36300678 GCATCCGAACTCGTTGAGTTGAGTTTGAGTTCATTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
*
36300743 TGAGTCCGAGTTTGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
36300771 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
36300836 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
36300864 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
*
36300929 TGAGTTCGAGT
66 TGAGTCCGAGT
36300940 ACACTTATGG
Statistics
Matches: 157, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 157 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:36300895 original size:47 final size:47
Alignment explanation
Indices: 36300727--36300895 Score: 220
Period size: 47 Copynumber: 3.6 Consensus size: 47
36300717 GATGCAAATG
*
36300727 TCCGAACTCGTTGAGTTGAGTCCGAGTTTGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* * * * *
36300774 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--ATG--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GAGAGATGTAACTAGGCA
36300820 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
*
36300867 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
36300896 ACTTATGGAT
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 8 0.08
44 1 0.01
45 2 0.02
46 27 0.26
47 55 0.53
48 2 0.02
50 8 0.08
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:36303813 original size:15 final size:15
Alignment explanation
Indices: 36303774--36303853 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
36303764 GTATCTTGGG
*
36303774 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
36303789 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
36303804 TTTCTTTATTC-CGA
1 TTTCTTTATTCTGGA
*
36303818 GTTTCTCTA-TCTTGGA
1 -TTTCTTTATTC-TGGA
*
36303834 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
36303848 TTTCTT
1 TTTCTT
36303854 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
14 12 0.23
15 37 0.70
16 4 0.08
ACGTcount: A:0.11, C:0.19, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:36306358 original size:20 final size:20
Alignment explanation
Indices: 36306333--36306378 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
36306323 TAACTAGGCA
36306333 TCCGAGCTCGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
* *
36306353 TCCGAGTTTGTTGAGTTGAG
1 TCCGAGCTCGTTGAGTTGAG
36306373 TCCGAG
1 TCCGAG
36306379 TTCACTTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.15, C:0.17, G:0.35, T:0.33
Consensus pattern (20 bp):
TCCGAGCTCGTTGAGTTGAG
Found at i:36306379 original size:20 final size:20
Alignment explanation
Indices: 36306342--36306380 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
36306332 ATCCGAGCTC
36306342 GTTGAGTTGAGTCCGAGTTT
1 GTTGAGTTGAGTCCGAGTTT
36306362 GTTGAGTTGAGTCCGAGTT
1 GTTGAGTTGAGTCCGAGTT
36306381 CACTTATGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.36, T:0.38
Consensus pattern (20 bp):
GTTGAGTTGAGTCCGAGTTT
Found at i:36307724 original size:27 final size:27
Alignment explanation
Indices: 36307694--36307833 Score: 163
Period size: 27 Copynumber: 5.2 Consensus size: 27
36307684 TACAGAAATG
*
36307694 CCCTCAATTTGTAGAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCATTTTA
* * *
36307721 CCCTCTATTTATAGAATTACCGTTTCA
1 CCCTCAATTTATAGAATTACCATTTTA
* * *
36307748 TCCTCAATTTACAGAATTACCGTTTTA
1 CCCTCAATTTATAGAATTACCATTTTA
*
36307775 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCATTTTA
* * * * *
36307802 CCCTCTATTTACAAAATTATCGTTTTA
1 CCCTCAATTTATAGAATTACCATTTTA
36307829 CCCTC
1 CCCTC
36307834 GATTGTGAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.41
Consensus pattern (27 bp):
CCCTCAATTTATAGAATTACCATTTTA
Found at i:36307777 original size:54 final size:54
Alignment explanation
Indices: 36307694--36307837 Score: 198
Period size: 54 Copynumber: 2.7 Consensus size: 54
36307684 TACAGAAATG
** * * *
36307694 CCCTCAATTTGTAGAATTACCATTTTACCCTCTATTTATAGAATTACCGTTTCA
1 CCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTCA
* *
36307748 TCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTCA
* * *
36307802 CCCTCTATTTACAAAATTATCGTTTTACCCTCGATT
1 CCCTCAATTTACAGAATTACCGTTTTACCCTCGATT
36307838 GTGAAATTAC
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (54 bp):
CCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTCA
Found at i:36307899 original size:27 final size:27
Alignment explanation
Indices: 36307869--36307964 Score: 124
Period size: 27 Copynumber: 3.6 Consensus size: 27
36307859 TTTAGGATAG
36307869 AATTACCAAAATACCTCTAGTTTGTAA
1 AATTACCAAAATACCTCTAGTTTGTAA
* * *
36307896 AATTTCCAAAATGA-CTCTGGTTTGTGA
1 AATTACCAAAAT-ACCTCTAGTTTGTAA
*
36307923 AATTACCAAAATACC-CTCAATTTGTAA
1 AATTACCAAAATACCTCT-AGTTTGTAA
36307950 AATTACCAAAATACC
1 AATTACCAAAATACC
36307965 CTGATTTACA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.05
27 55 0.93
28 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCTCTAGTTTGTAA
Found at i:36307907 original size:54 final size:53
Alignment explanation
Indices: 36307827--36307965 Score: 126
Period size: 54 Copynumber: 2.6 Consensus size: 53
36307817 ATTATCGTTT
* * *
36307827 TACCCTCGA-TTGTGAAATTACTAAAATACCCCT-TTAGGAT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGTT-GG-TGA-AATTACCAAAA
* * * *
36307880 TA-CCTCTAGTTTGTAAAATTTCCAAAATGA-CTCTGGTTTGTGAAATTACCAAAA
1 TACCCTC-AATTTGTAAAATTACCAAAAT-ACCCCT-GTTGGTGAAATTACCAAAA
36307934 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
36307966 TGATTTACAA
Statistics
Matches: 68, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
52 4 0.06
53 3 0.04
54 52 0.76
55 7 0.10
56 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGTTGGTGAAATTACCAAAA
Found at i:36308172 original size:27 final size:27
Alignment explanation
Indices: 36308095--36308172 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
36308085 AAATGACTAA
*
36308095 AATACCCCTA-ATAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
36308122 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
*
36308149 AATACCCTTATATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
36308173 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:36308904 original size:20 final size:21
Alignment explanation
Indices: 36308869--36308925 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
36308859 TGATACGTGG
36308869 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
36308887 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
36308908 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
36308926 GTATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:36309008 original size:26 final size:26
Alignment explanation
Indices: 36308975--36309175 Score: 280
Period size: 26 Copynumber: 7.8 Consensus size: 26
36308965 GAGGAAGTGC
**
36308975 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
36309001 AAATGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
36309027 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
36309053 GAAAGGGCTTATGGCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
36309079 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
36309105 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
36309131 GAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
36309156 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
36309176 ATTAAAGAGG
Statistics
Matches: 153, Mismatches: 22, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 31 0.20
26 122 0.80
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:36309109 original size:78 final size:78
Alignment explanation
Indices: 36308976--36309175 Score: 332
Period size: 78 Copynumber: 2.6 Consensus size: 78
36308966 AGGAAGTGCA
** * *
36308976 AAAGGGCTTATGCCCCAGTTTATTGAAATGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGC
1 AAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGC
36309041 CCCAGTTTATTGG
66 CCCAGTTTATTGG
*
36309054 AAAGGGCTTATGGCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGC
1 AAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGC
*
36309119 CCTAGTTTATTGG
66 CCCAGTTTATTGG
36309132 AAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
36309176 ATTAAAGAGG
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
76 10 0.09
77 24 0.21
78 81 0.70
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (78 bp):
AAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGC
CCCAGTTTATTGG
Found at i:36309428 original size:31 final size:31
Alignment explanation
Indices: 36309393--36309560 Score: 282
Period size: 31 Copynumber: 5.4 Consensus size: 31
36309383 CATTTACAGT
*
36309393 AAAGGCTTCGGCTCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
36309424 AAAGGCTTCGGCTCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
36309455 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
36309486 AAAGGCTTCGGCCCAGTGATATGATTTAGGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
36309517 AAAGGCTTCGGCCCAGTCATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
36309548 AAAGGCTTTGGCC
1 AAAGGCTTCGGCC
36309561 TAGTAACCGT
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 130 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:36311841 original size:27 final size:27
Alignment explanation
Indices: 36311811--36311954 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
36311801 TACTGAAATG
*
36311811 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
36311838 CCCTCGATTTATAGAATTA-CAGTTTCA
1 CCCTCGATTTATAGAATTACCA-TTTTA
* * * *
36311865 CCCTTGATTTACAGAATTAACGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
36311892 CCCTCGGTTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
36311919 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
36311946 CCCTAGATT
1 CCCTCGATT
36311955 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
26 2 0.02
27 95 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:36311881 original size:54 final size:54
Alignment explanation
Indices: 36311811--36311954 Score: 182
Period size: 54 Copynumber: 2.7 Consensus size: 54
36311801 TACTGAAATG
** * *
36311811 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTA-CAGTTTCA
1 CCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTATAGAATTACCA-TTTCA
* * *
36311865 CCCTTGATTTACAGAATTAACGTTTTACCCTCGGTTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTATAGAATTACCATTTCA
* * *
36311919 CCCTCGATTTACAAAATTATCGTTTTACCCTAGATT
1 CCCTCGATTTACAGAATTAACGTTTTACCCTCGATT
36311955 GTGAAATTAC
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 75 0.97
55 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTATAGAATTACCATTTCA
Found at i:36312016 original size:27 final size:27
Alignment explanation
Indices: 36311946--36312109 Score: 127
Period size: 27 Copynumber: 6.1 Consensus size: 27
36311936 TATCGTTTTA
* * **
36311946 CCCTAGATTGTGAAATTACTGAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
** *
36311973 CCCT-GTAAGATAGAATTACCAAAATAC
1 CCCTAGTTTG-TAAAATTACCAAAATAC
*
36312000 CCCTAGTTTGTAAAATTACCAGAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
** * * *
36312027 CATTGGTTTGTGAAATTACTAAAATA-
1 CCCTAGTTTGTAAAATTACCAAAATAC
*
36312053 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-AGTTTGTAAAATTACCAAAATAC
* **
36312081 CCCTAATTTACAAAATTA-CAGAAATAC
1 CCCTAGTTTGTAAAATTACCA-AAATAC
36312108 CC
1 CC
36312110 TTGACTTTCT
Statistics
Matches: 107, Mismatches: 25, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
26 6 0.06
27 94 0.88
28 7 0.07
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCTAGTTTGTAAAATTACCAAAATAC
Found at i:36312097 original size:54 final size:54
Alignment explanation
Indices: 36311986--36312166 Score: 168
Period size: 54 Copynumber: 3.3 Consensus size: 54
36311976 TGTAAGATAG
* * * ***
36311986 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAGAATACCATTGGTTTGTGA
1 AATTACTAAAATACCCTC-AATTTGTAAAATTACCAAAATACCATTGGTTTACAA
** **
36312040 AATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCATTGGTTTACAA
* * * **
36312094 AATTAC-AGAAATACCCTTGACTTTCTAAAAATTATAAAAATACCATTGGTTTACAA
1 AATTACTA-AAATACCC-TCAATTTGT-AAAATTACCAAAATACCATTGGTTTACAA
*
36312150 AATTACTGAAATACCCT
1 AATTACTAAAATACCCT
36312167 TGGTTTGTAG
Statistics
Matches: 102, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 56 0.55
55 8 0.08
56 37 0.36
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCATTGGTTTACAA
Found at i:36312161 original size:27 final size:27
Alignment explanation
Indices: 36312087--36312172 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
36312077 ATACCCCTAA
* *
36312087 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
* *
36312115 TTT-CTAAAAATTA-TAAAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCCTTGG
36312143 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
36312170 TTT
1 TTT
36312173 GTAGATTTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
27 22 0.47
28 7 0.15
29 18 0.38
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:36313021 original size:20 final size:20
Alignment explanation
Indices: 36312996--36313062 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
36312986 GATATGATAT
*
36312996 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
36313016 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
36313036 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
36313056 ACATGAT
1 ACATGAT
36313063 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:36313141 original size:26 final size:26
Alignment explanation
Indices: 36313111--36313233 Score: 128
Period size: 26 Copynumber: 4.8 Consensus size: 26
36313101 AAGGAAGTGC
*
36313111 AAAAGGGCTTATGGCCCAGTTTATCG
1 AAAAGGGCTTATGGCCCAGTTTACCG
* *
36313137 AAAAGGGCTTAT-GCCCTAGTCTACCA
1 AAAAGGGCTTATGGCCC-AGTTTACCG
**
36313163 AAAAGGGCTTAT-GCCCTAGTTTATTG
1 AAAAGGGCTTATGGCCC-AGTTTACCG
* *
36313189 AAAACGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGGCCCAGTTTACCG
*
36313214 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGGCCCAGTT
36313234 ATTAAAGAGG
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
25 31 0.37
26 52 0.63
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGGCCCAGTTTACCG
Found at i:36313192 original size:52 final size:50
Alignment explanation
Indices: 36313111--36313233 Score: 158
Period size: 51 Copynumber: 2.4 Consensus size: 50
36313101 AAGGAAGTGC
* *
36313111 AAAAGGGCTTATGGCCCAGTTTATCGAAAAGGGCTTATGCCCTAGTCTACCA
1 AAAAGGGCTTAT-GCCCAGTTTATCGAAAACGGCTT-TGCCCCAGTCTACCA
* * *
36313163 AAAAGGGCTTATGCCCTAGTTTATTGAAAACGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCC-AGTTTATCGAAAACGGCTTTGCCCCAGTCTACCA
36313214 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATG-CCCAGTT
36313234 ATTAAAGAGG
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
50 6 0.09
51 29 0.45
52 29 0.45
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCAGTTTATCGAAAACGGCTTTGCCCCAGTCTACCA
Found at i:36313488 original size:31 final size:31
Alignment explanation
Indices: 36313453--36313622 Score: 268
Period size: 31 Copynumber: 5.5 Consensus size: 31
36313443 TTTACAGTAT
*
36313453 AGGCTTCAGCCCAATGATATGATTTATGAAA
1 AGGCTTCAGCCCAGTGATATGATTTATGAAA
*
36313484 AGGCTTCGGCCCAGTGATATGATTTATGAAA
1 AGGCTTCAGCCCAGTGATATGATTTATGAAA
* *
36313515 AGGCTTCAGCCTAGTGAAATGATTTATGAAA
1 AGGCTTCAGCCCAGTGATATGATTTATGAAA
*
36313546 AGGCTTCGGCCCAGTGATATGATTTATGAAA
1 AGGCTTCAGCCCAGTGATATGATTTATGAAA
* *
36313577 AGACTTCAGCCAAGTGATATGATTTATGAAA
1 AGGCTTCAGCCCAGTGATATGATTTATGAAA
*
36313608 AGGCTTCGGCCCAGT
1 AGGCTTCAGCCCAGT
36313623 AACCGTTAAA
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 125 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (31 bp):
AGGCTTCAGCCCAGTGATATGATTTATGAAA
Found at i:36313550 original size:62 final size:62
Alignment explanation
Indices: 36313453--36313622 Score: 297
Period size: 62 Copynumber: 2.7 Consensus size: 62
36313443 TTTACAGTAT
36313453 AGGCTTCAGCCCAA-TGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAAA
1 AGGCTTCAG-CCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAAA
* *
36313515 AGGCTTCAGCCTAGTGAAATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAAA
1 AGGCTTCAGCCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAAA
*
36313577 AGACTTCAGCCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGT
1 AGGCTTCAGCCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGT
36313623 AACCGTTAAA
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
61 3 0.03
62 99 0.97
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (62 bp):
AGGCTTCAGCCAAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAAA
Found at i:36320956 original size:42 final size:43
Alignment explanation
Indices: 36320901--36321015 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 43
36320891 GTTTTGTGAT
*
36320901 TTACGTGAAAGACCATGTCTGGGACATTGGCATCGTATATGAG-
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCG-ATATGAGA
* * *
36320944 TT-CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATGAGA
* *
36320986 TTACATGTAAGACCACGTCTGGGACATTGG
1 TTACGTGTAAGACCATGTCTGGGACATTGG
36321016 TGTTGTACAA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 6 0.10
42 31 0.50
43 25 0.40
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATGAGA
Found at i:36321009 original size:43 final size:43
Alignment explanation
Indices: 36320895--36321011 Score: 141
Period size: 43 Copynumber: 2.7 Consensus size: 43
36320885 TGGGACGTTT
* * * *
36320895 TGTGATTTACGTGAAAGACCATGTCTGGGACATTGGCATCGTA
1 TGTGAGTTACGTGTAAGACCACGTCTGGGACAGTGGCATCGTA
*
36320938 TATGAGTT-CGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATA
1 TGTGAGTTACGTGTAAGACCAC-GTCTGGGACAGTGGCATCG-TA
*
36320981 TGTGA-TTACATGTAAGACCACGTCTGGGACA
1 TGTGAGTTACGTGTAAGACCACGTCTGGGACA
36321012 TTGGTGTTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 30 0.48
43 32 0.51
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
TGTGAGTTACGTGTAAGACCACGTCTGGGACAGTGGCATCGTA
Found at i:36323784 original size:20 final size:20
Alignment explanation
Indices: 36323759--36323804 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
36323749 TTTTTCTCAC
36323759 TGAGTTCTTATAAACTTATA
1 TGAGTTCTTATAAACTTATA
36323779 TGAGTTCTTATAAACTTATA
1 TGAGTTCTTATAAACTTATA
36323799 TGAGTT
1 TGAGTT
36323805 ACACTTTACG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.46
Consensus pattern (20 bp):
TGAGTTCTTATAAACTTATA
Found at i:36325694 original size:42 final size:42
Alignment explanation
Indices: 36325611--36325736 Score: 171
Period size: 42 Copynumber: 3.0 Consensus size: 42
36325601 GGGTAAATCT
* *
36325611 AACAACCCAAGATTATTTTCTCCTCTTTTTAAGTTCTTTTTTC
1 AACAACCCAAGATTATATTCTCCT-TTTTTAAATTCTTTTTTC
* * *
36325654 AACAACCCAAGATTATCTTCTTCTTTTTTAATTTCTTTTTTC
1 AACAACCCAAGATTATATTCTCCTTTTTTAAATTCTTTTTTC
* * *
36325696 AACAACCTAAGATTATATTCTCCTTGTTTAAATTATTTTTT
1 AACAACCCAAGATTATATTCTCCTTTTTTAAATTCTTTTTT
36325737 TCTAGGATAA
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 52 0.70
43 22 0.30
ACGTcount: A:0.26, C:0.20, G:0.04, T:0.50
Consensus pattern (42 bp):
AACAACCCAAGATTATATTCTCCTTTTTTAAATTCTTTTTTC
Found at i:36327221 original size:42 final size:42
Alignment explanation
Indices: 36327168--36327327 Score: 160
Period size: 42 Copynumber: 3.8 Consensus size: 42
36327158 GTTATGTGCG
* * *
36327168 ATTTCGTGTAAGACCATATTTGGGATATGGCATTGATATGTA
1 ATTTCATGTAAGACCATATCTGGGATATGGCATCGATATGTA
*
36327210 ATTTCATGTAAGACCATGTCTGGGATATGGCATCGATATG-A
1 ATTTCATGTAAGACCATATCTGGGATATGGCATCGATATGTA
** * * * * * *
36327251 GACATCGTGTAAGACCATAGCTCGGCTATCGACATCGATATGTG
1 -ATTTCATGTAAGACCATATCTGGGATAT-GGCATCGATATGTA
** *
36327295 ATCCCATGTAAGGCCATATCTGGGATATGGCAT
1 ATTTCATGTAAGACCATATCTGGGATATGGCAT
36327328 TGGCATCTTA
Statistics
Matches: 93, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.01
42 61 0.66
43 31 0.33
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (42 bp):
ATTTCATGTAAGACCATATCTGGGATATGGCATCGATATGTA
Found at i:36330660 original size:16 final size:16
Alignment explanation
Indices: 36330635--36330672 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
36330625 GCCGTGTGGT
36330635 ACTTAACTAGTTATTG
1 ACTTAACTAGTTATTG
*
36330651 ACTTAGCTAGTTATTG
1 ACTTAACTAGTTATTG
36330667 ACTTAA
1 ACTTAA
36330673 GCCCATGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (16 bp):
ACTTAACTAGTTATTG
Found at i:36345395 original size:46 final size:47
Alignment explanation
Indices: 36345334--36345610 Score: 274
Period size: 46 Copynumber: 5.9 Consensus size: 47
36345324 GGGATATTTG
36345334 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *** * * *
36345381 -GCGTCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA
* * *
36345427 GGCATCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * * *
36345474 -GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTA-ACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA
*
36345520 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* ** *
36345568 CGTTCGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -G-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36345611 GCGGGTCACA
Statistics
Matches: 181, Mismatches: 40, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
46 72 0.40
47 70 0.39
48 1 0.01
49 1 0.01
50 37 0.20
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:36345493 original size:93 final size:93
Alignment explanation
Indices: 36345334--36345603 Score: 432
Period size: 93 Copynumber: 2.9 Consensus size: 93
36345324 GGGATATTTG
*
36345334 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCAAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCAAACTCGTTGAG
*
36345399 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCAAGAGATGTAACTA
* * *
36345427 GGCATCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCATCCAAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCAAACTCGTTGAG
36345492 TTGAGTCCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCGAGTTCAAGAGATGTAACTA
* * *
36345520 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCGCCCGAGCTCGT
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-G--CGTCCAAACTCGT
36345585 TGAGTTGAGTCCGAGTTCA
62 TGAGTTGAGTCCGAGTTCA
36345604 CTTATGGGCG
Statistics
Matches: 162, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
93 132 0.81
94 1 0.01
95 1 0.01
97 28 0.17
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCAAACTCGTTGAG
TTGAGTCCGAGTTCAAGAGATGTAACTA
Found at i:36345534 original size:47 final size:47
Alignment explanation
Indices: 36345390--36345553 Score: 206
Period size: 47 Copynumber: 3.5 Consensus size: 47
36345380 AGCGTCCAAA
*
36345390 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTAGGCATCCGAG
* * *** * * * * *
36345437 CTTGTTGAGTTGAGTCTGAGTTC-ACTTATGGATGCGA-GCATCCAAA
1 CTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTA-ACTAGGCATCCGAG
36345483 CTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTAGGCATCCGAG
36345530 CTCGTTGAGTTGAGTCCGAGTTCA
1 CTCGTTGAGTTGAGTCCGAGTTCA
36345554 CTTATGGATG
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 35 0.37
47 59 0.63
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTAGGCATCCGAG
Found at i:36352685 original size:33 final size:33
Alignment explanation
Indices: 36352643--36352707 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
36352633 AGCCATTTTT
*
36352643 TTAAAAAGGAAAACAAATGAATGTAAAAAAAAA
1 TTAAAAAGGAAAACAAATGAATCTAAAAAAAAA
36352676 TTAAAAAGGAAAACAAATGAATCTAAAAAAAA
1 TTAAAAAGGAAAACAAATGAATCTAAAAAAAA
36352708 TGAGTCTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.69, C:0.05, G:0.11, T:0.15
Consensus pattern (33 bp):
TTAAAAAGGAAAACAAATGAATCTAAAAAAAAA
Found at i:36352704 original size:16 final size:17
Alignment explanation
Indices: 36352685--36352721 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
36352675 ATTAAAAAGG
36352685 AAAACAAATGAATC-TA
1 AAAACAAATGAATCTTA
*
36352701 AAAA-AAATGAGTCTTA
1 AAAACAAATGAATCTTA
36352717 AAAAC
1 AAAAC
36352722 TTAATGAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.62, C:0.11, G:0.08, T:0.19
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:36358944 original size:31 final size:31
Alignment explanation
Indices: 36358901--36358964 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
36358891 CCTTTTCATA
36358901 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
* ** **
36358932 TTTCTTATTTCATATTACTGGGTTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
36358963 TT
1 TT
36358965 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:36359203 original size:23 final size:24
Alignment explanation
Indices: 36359172--36359253 Score: 105
Period size: 23 Copynumber: 3.4 Consensus size: 24
36359162 GTGGAGGCCT
*
36359172 AGCCTCTTTTAATAAATGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
* *
36359196 AACCCTTTTTAATAACTAGGGCATA
1 AGCCC-TTTTAATAACTGGGGCATA
36359221 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
36359244 AGCCCTTTTA
1 AGCCCTTTTA
36359254 CACTTCCTTC
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
23 23 0.46
24 22 0.44
25 5 0.10
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:36359327 original size:20 final size:20
Alignment explanation
Indices: 36359302--36359388 Score: 147
Period size: 20 Copynumber: 4.3 Consensus size: 20
36359292 TTGTGATTAC
36359302 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
36359322 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36359342 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36359362 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36359382 ACCATGT
1 ATCATGT
36359389 TTATCAAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:36359333 original size:11 final size:11
Alignment explanation
Indices: 36359302--36359377 Score: 65
Period size: 11 Copynumber: 7.5 Consensus size: 11
36359292 TTGTGATTAC
36359302 ATCATGTGCAT
1 ATCATGTGCAT
*
36359313 ATCA--TACAT
1 ATCATGTGCAT
36359322 ATCATGTGCAT
1 ATCATGTGCAT
*
36359333 ATCA--TACAT
1 ATCATGTGCAT
*
36359342 GTCATGTGCAT
1 ATCATGTGCAT
*
36359353 ATCA--TACAT
1 ATCATGTGCAT
*
36359362 GTCATGTGCAT
1 ATCATGTGCAT
36359373 ATCAT
1 ATCAT
36359378 ACATACCATG
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.45
11 27 0.55
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:36361445 original size:27 final size:26
Alignment explanation
Indices: 36361389--36361445 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
36361379 CAACCTTAAC
* * *
36361389 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
36361415 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
36361442 CCTA
1 CCTA
36361446 TATAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:36371005 original size:13 final size:13
Alignment explanation
Indices: 36370987--36371011 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36370977 TCTTACTCGT
36370987 AACCACATATCGG
1 AACCACATATCGG
36371000 AACCACATATCG
1 AACCACATATCG
36371012 ATGCCATAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.16
Consensus pattern (13 bp):
AACCACATATCGG
Found at i:36385585 original size:64 final size:64
Alignment explanation
Indices: 36385504--36385686 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 64
36385494 AGACATTATG
* *
36385504 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
36385568 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36385633 AA
63 AA
* * * *
36385635 ATG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
36385687 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
61 1 0.01
62 19 0.19
63 1 0.01
64 24 0.24
65 18 0.18
66 2 0.02
67 33 0.34
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:36386775 original size:2 final size:2
Alignment explanation
Indices: 36386768--36386796 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
36386758 TCATGACATG
36386768 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36386797 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36392801 original size:71 final size:71
Alignment explanation
Indices: 36392715--36392878 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36392705 CGATTTGTCT
36392715 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36392780 CTTTCA
66 CTTTCA
36392786 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36392851 CTTTCA
66 CTTTCA
36392857 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36392879 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36392916 original size:71 final size:70
Alignment explanation
Indices: 36392715--36392912 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
36392705 CGATTTGTCT
* * * *
36392715 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36392780 CTTTCA
65 CTTTCA
* * * *
36392786 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36392851 CTTTCA
65 CTTTCA
* *
36392857 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36392913 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36399161 original size:71 final size:71
Alignment explanation
Indices: 36399075--36399238 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
36399065 CGATTTGTCT
36399075 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36399140 CTTTCA
66 CTTTCA
36399146 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36399211 CTTTCA
66 CTTTCA
36399217 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36399239 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36399276 original size:71 final size:70
Alignment explanation
Indices: 36399075--36399272 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
36399065 CGATTTGTCT
* * * *
36399075 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36399140 CTTTCA
65 CTTTCA
* * * *
36399146 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36399211 CTTTCA
65 CTTTCA
* *
36399217 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36399273 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36414601 original size:40 final size:40
Alignment explanation
Indices: 36414493--36414742 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
36414483 CGGGATTTAA
* * * * *
36414493 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
36414533 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36414573 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36414613 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36414653 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36414693 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36414733 CCGGATATAT
1 CCGGATATAT
36414743 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:36422705 original size:40 final size:40
Alignment explanation
Indices: 36422597--36422846 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
36422587 CGGGATTTAA
* * * * *
36422597 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
36422637 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36422677 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36422717 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36422757 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36422797 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
36422837 CCGGATATAT
1 CCGGATATAT
36422847 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:36440862 original size:27 final size:28
Alignment explanation
Indices: 36440805--36440874 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
36440795 AAACTTGTAC
*
36440805 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
36440833 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
36440860 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36440875 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:36440885 original size:27 final size:27
Alignment explanation
Indices: 36440805--36440886 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
36440795 AAACTTGTAC
* * *
36440805 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
36440833 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
36440860 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
36440887 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:36448797 original size:27 final size:28
Alignment explanation
Indices: 36448740--36448809 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
36448730 AAACTTGTAC
*
36448740 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
36448768 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
36448795 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36448810 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:36448820 original size:27 final size:27
Alignment explanation
Indices: 36448740--36448821 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
36448730 AAACTTGTAC
* * *
36448740 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
36448768 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
36448795 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
36448822 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:36460418 original size:27 final size:27
Alignment explanation
Indices: 36460388--36460453 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
36460378 AAAATCATCT
36460388 CTTTCAAAAACCAAGGTTT-AGAAAAAA
1 CTTTCAAAAACCAA-GTTTGAGAAAAAA
** * *
36460415 CTTTTGAAAACTCAATTTTGAGAAAAAT
1 CTTTCAAAAAC-CAAGTTTGAGAAAAAA
36460443 C-TTCAAAAACC
1 CTTTCAAAAACC
36460454 CATTCCATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 1 0.03
27 19 0.61
28 11 0.35
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (27 bp):
CTTTCAAAAACCAAGTTTGAGAAAAAA
Found at i:36463223 original size:71 final size:71
Alignment explanation
Indices: 36463139--36463302 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
36463129 CGATTTGTCT
36463139 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
36463204 CTTTCA
66 CTTTCA
* *
36463210 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
36463275 CTTTCA
66 CTTTCA
36463281 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36463303 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:36463340 original size:71 final size:70
Alignment explanation
Indices: 36463139--36463336 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
36463129 CGATTTGTCT
* * * * *
36463139 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36463204 CTTTCA
65 CTTTCA
* * * *
36463210 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
36463275 CTTTCA
65 CTTTCA
* *
36463281 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
36463337 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:36470715 original size:69 final size:71
Alignment explanation
Indices: 36470633--36470793 Score: 301
Period size: 69 Copynumber: 2.3 Consensus size: 71
36470623 CGATTTGTCT
36470633 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36470697 C-TTCA
66 CTTTCA
36470702 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
36470767 CTTTCA
66 CTTTCA
36470773 CGTAGCTCTC-TGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
36470794 ATACATCTCG
Statistics
Matches: 90, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
69 52 0.58
70 24 0.27
71 14 0.16
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:36473930 original size:13 final size:13
Alignment explanation
Indices: 36473912--36473942 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36473902 CATTAAGCTC
36473912 AAATATGAAACCA
1 AAATATGAAACCA
*
36473925 AAATATGATACCA
1 AAATATGAAACCA
36473938 AAATA
1 AAATA
36473943 AGCCAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (13 bp):
AAATATGAAACCA
Found at i:36476307 original size:40 final size:40
Alignment explanation
Indices: 36476270--36476454 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
36476260 GCTACTCGTT
*
36476270 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36476310 CAAATGCCTTCGGGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
36476349 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
36476389 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
36476430 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36476455 CATCATTCGA
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.24
40 87 0.66
41 10 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36476381 original size:79 final size:79
Alignment explanation
Indices: 36476237--36476454 Score: 250
Period size: 79 Copynumber: 2.7 Consensus size: 79
36476227 GAATCACGTA
** *
36476237 CCTTCGGAGT-TTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATA
1 CCTTCGGA-TCTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATA
36476300 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* *
36476316 CCTTCGGGA-CTTAACCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT-T
1 CCTTC-GGATCTTAACCGGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTAT
*
36476378 AGTAACTCGCACGAATG
63 AGTAACTCGCACAAATG
* *
36476395 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
36476455 CATCATTCGA
Statistics
Matches: 119, Mismatches: 11, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
78 7 0.06
79 68 0.57
80 33 0.28
81 11 0.09
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (79 bp):
CCTTCGGATCTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGT
AACTCGCACAAATG
Found at i:36484267 original size:40 final size:40
Alignment explanation
Indices: 36484230--36484455 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
36484220 GCTACTCGTT
*
36484230 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
36484270 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
*
36484310 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
36484350 CAAATGCCTTCGGAGCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
36484390 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
36484431 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
36484456 CATCATTCGA
Statistics
Matches: 170, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 155 0.91
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:36484342 original size:80 final size:80
Alignment explanation
Indices: 36484230--36484455 Score: 316
Period size: 80 Copynumber: 2.8 Consensus size: 80
36484220 GCTACTCGTT
* * *
36484230 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
36484293 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
*
36484310 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC-GGAGCTTAGTCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
36484374 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* * * *
36484390 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
36484454 GA
65 GA
36484456 CATCATTCGA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
79 6 0.05
80 113 0.86
81 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATTTAGTAACTCGCA
Found at i:36485798 original size:40 final size:40
Alignment explanation
Indices: 36485754--36485832 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
36485744 TCCCGAAACT
36485754 GCTTTCCGACTAGGGTCACTTTAGGGCTGTCACATGATCC
1 GCTTTCCGACTAGGGTCACTTTAGGGCTGTCACATGATCC
36485794 GCTTTCCGACTAGGGTCACTTTAGGGCTGTCACATGATC
1 GCTTTCCGACTAGGGTCACTTTAGGGCTGTCACATGATC
36485833 TAATTCTGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.30
Consensus pattern (40 bp):
GCTTTCCGACTAGGGTCACTTTAGGGCTGTCACATGATCC
Found at i:36493081 original size:24 final size:25
Alignment explanation
Indices: 36493021--36493089 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 25
36493011 AAGACATGGT
36493021 TGGTAAGCTCT-TCATGAGCTAATAAA
1 TGGTAAGCTCTAT--TGAGCTAATAAA
**
36493047 CAGTAAGCTCTATTGAGCTAA-AAA
1 TGGTAAGCTCTATTGAGCTAATAAA
36493071 TGGTAAGCTCTATTGAGCT
1 TGGTAAGCTCTATTGAGCT
36493090 GATTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 20 0.53
25 8 0.21
26 9 0.24
27 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (25 bp):
TGGTAAGCTCTATTGAGCTAATAAA
Found at i:36495250 original size:40 final size:40
Alignment explanation
Indices: 36495065--36495286 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
36495055 TCGAATGATG
* * *
36495065 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36495105 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36495144 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36495183 TCC-GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36495221 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36495262 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36495287 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
38 60 0.37
39 19 0.12
40 72 0.45
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36503732 original size:40 final size:40
Alignment explanation
Indices: 36503674--36503841 Score: 166
Period size: 40 Copynumber: 4.2 Consensus size: 40
36503664 CAATTGAATG
* *
36503674 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
* *
36503715 -TATCCGGGCTAATACCCGAAGGC-ATTCATGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
36503754 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
36503794 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
36503834 ATATCCGG
1 ATATCCGG
36503842 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 11, Indels: 17
0.79 0.08 0.12
Matches are distributed among these distances:
39 8 0.07
40 96 0.89
41 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:36503812 original size:80 final size:79
Alignment explanation
Indices: 36503674--36503841 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
36503664 CAATTGAATG
* * *
36503674 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
36503739 TTCATGCAAGTTGTT
65 TTCATGCAAGTGGTT
* *
36503754 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
* **
36503818 ATTCGTGCGTGTGGTT
64 ATTCATGCAAGTGGTT
36503834 ATATCCGG
1 ATATCCGG
36503842 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 2 0.03
80 74 0.96
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCATGCAAGTGGTT
Found at i:36506556 original size:40 final size:40
Alignment explanation
Indices: 36506370--36506590 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
36506360 TCGAATGATG
* * *
36506370 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36506409 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36506448 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36506487 TCTGGGCTAAG-CCC-AAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36506525 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36506566 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36506591 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
38 55 0.35
39 38 0.24
40 56 0.35
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36506572 original size:78 final size:78
Alignment explanation
Indices: 36506370--36506588 Score: 259
Period size: 78 Copynumber: 2.8 Consensus size: 78
36506360 TCGAATGATG
* * * *
36506370 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCAAGGCATT
*
36506433 TGTGCGAGTTACTAA
64 GGTGCGAGTTACTAA
* * *
36506448 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-ATTCTGGGCTAAG-CCCAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCAAGGCATTG
36506510 GTGCGAGTTACTAAA
65 GTGCGAGTTACT-AA
* * *
36506525 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC-AAGGCATT
36506589 TGAACGAGTA
Statistics
Matches: 119, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
76 22 0.18
77 15 0.13
78 64 0.54
79 10 0.08
80 8 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCAAGGCATTGG
TGCGAGTTACTAA
Found at i:36506597 original size:40 final size:38
Alignment explanation
Indices: 36506371--36506590 Score: 221
Period size: 38 Copynumber: 5.6 Consensus size: 38
36506361 CGAATGATGT
* * *
36506371 CCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
36506410 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36506449 TCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAATT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
36506488 CTGGGCTAAGCCC-AAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36506525 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36506566 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAG-CCCGAAGGCATTTG
36506591 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 56 0.36
39 36 0.23
40 56 0.36
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (38 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36517116 original size:24 final size:23
Alignment explanation
Indices: 36517084--36517192 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
36517074 ACCAAACGTT
* **
36517084 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
36517108 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
36517132 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
36517156 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
36517180 GCACACATAGTGC
1 GCACACATAGTGC
36517193 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:36517158 original size:48 final size:48
Alignment explanation
Indices: 36517084--36517192 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
36517074 ACCAAACGTT
* **
36517084 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
36517132 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
36517180 GCACACATAGTGC
1 GCACACATAGTGC
36517193 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:36524992 original size:24 final size:23
Alignment explanation
Indices: 36524960--36525068 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
36524950 ACCAAACGTT
* **
36524960 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
36524984 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
36525008 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
36525032 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
36525056 GCACACATAGTGC
1 GCACACATAGTGC
36525069 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:36525034 original size:48 final size:48
Alignment explanation
Indices: 36524960--36525068 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
36524950 ACCAAACGTT
* **
36524960 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
36525008 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
36525056 GCACACATAGTGC
1 GCACACATAGTGC
36525069 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:36528969 original size:18 final size:18
Alignment explanation
Indices: 36528946--36528985 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
36528936 TTACCCTCAA
36528946 TATTAACCCATAACCCAT
1 TATTAACCCATAACCCAT
36528964 TATTAACCCATAACCCAT
1 TATTAACCCATAACCCAT
36528982 TATT
1 TATT
36528986 GTTGAAATCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.33
Consensus pattern (18 bp):
TATTAACCCATAACCCAT
Found at i:36531349 original size:30 final size:30
Alignment explanation
Indices: 36531314--36531375 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
36531304 GAAGTAGAGG
36531314 TCCTTAAATGGTAATTAGACCATT-GAGTTT
1 TCCTTAAATGGTAATTAGACCATTAG-GTTT
*
36531344 TCCTTAAATGGTAATTAGATCATTAGGTTT
1 TCCTTAAATGGTAATTAGACCATTAGGTTT
36531374 TC
1 TC
36531376 ATTGACAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (30 bp):
TCCTTAAATGGTAATTAGACCATTAGGTTT
Found at i:36532082 original size:28 final size:28
Alignment explanation
Indices: 36532042--36532099 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
36532032 GTCTATTTTC
*
36532042 ATAGGAAAGAAACAGAGCAGGCAAAGGA
1 ATAGGAAAGAAACAGAGCAAGCAAAGGA
36532070 ATAGGAAAGAAACAGAGCAAGCAAAGGA
1 ATAGGAAAGAAACAGAGCAAGCAAAGGA
36532098 AT
1 AT
36532100 TCTATATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.29, T:0.05
Consensus pattern (28 bp):
ATAGGAAAGAAACAGAGCAAGCAAAGGA
Found at i:36538430 original size:13 final size:13
Alignment explanation
Indices: 36538412--36538437 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36538402 AAGCAATCGA
36538412 ACACGGGCGTGTC
1 ACACGGGCGTGTC
36538425 ACACGGGCGTGTC
1 ACACGGGCGTGTC
36538438 CCTGCCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:36540453 original size:29 final size:29
Alignment explanation
Indices: 36540420--36540580 Score: 214
Period size: 29 Copynumber: 5.6 Consensus size: 29
36540410 GTGACGAGAT
36540420 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36540449 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36540478 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
36540507 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
36540536 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36540565 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
36540581 GGCTTAAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36548483 original size:29 final size:29
Alignment explanation
Indices: 36548450--36548610 Score: 214
Period size: 29 Copynumber: 5.6 Consensus size: 29
36548440 GTGACGAGAT
36548450 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36548479 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36548508 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
36548537 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
36548566 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36548595 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
36548611 GGCTTAAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36556165 original size:21 final size:21
Alignment explanation
Indices: 36556140--36556181 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
36556130 ACTTATCTCC
36556140 CTATCTTATGATTATAAATCT
1 CTATCTTATGATTATAAATCT
36556161 CTATCTTATGATTATAAATCT
1 CTATCTTATGATTATAAATCT
36556182 ATCTTTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.48
Consensus pattern (21 bp):
CTATCTTATGATTATAAATCT
Found at i:36556184 original size:19 final size:20
Alignment explanation
Indices: 36556140--36556186 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 20
36556130 ACTTATCTCC
36556140 CTATCTTATGATTATAAATCT
1 CTATCTTATGATTATAAA-CT
36556161 CTATCTTATGATTATAAA-T
1 CTATCTTATGATTATAAACT
36556180 CTATCTT
1 CTATCTT
36556187 TTTCAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 8 0.31
21 18 0.69
ACGTcount: A:0.32, C:0.15, G:0.04, T:0.49
Consensus pattern (20 bp):
CTATCTTATGATTATAAACT
Found at i:36560983 original size:34 final size:35
Alignment explanation
Indices: 36560940--36561010 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 35
36560930 ATGGGTGGAT
36560940 TTTCATTGCGATCATTTGGATTACCA-TAAGATCA
1 TTTCATTGCGATCATTTGGATTACCATTAAGATCA
36560974 TTTCATTGCGATCATTTGGATTACCATTAAGATCA
1 TTTCATTGCGATCATTTGGATTACCATTAAGATCA
36561009 TT
1 TT
36561011 CTTGTTTCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 26 0.72
35 10 0.28
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (35 bp):
TTTCATTGCGATCATTTGGATTACCATTAAGATCA
Found at i:36566355 original size:42 final size:42
Alignment explanation
Indices: 36566236--36566360 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 42
36566226 TAAATCTAAG
* * * *
36566236 AACCCAAGTTTATCTTATCCTCCTTTTAAATTCTTCTTTCAAA
1 AACCCAAGATTATCTTAT-CTCTTTTTAAATTATTTTTTCAAA
* * * *
36566279 AACCTAAGGTTATCTTCTTCTCTTTTTAAATTATTTTTTCAAC
1 AACCCAAGATTATCTT-ATCTCTTTTTAAATTATTTTTTCAAA
36566322 AACCCAAGATTATCTTATCAT-TTTTTAAATTATTATTTT
1 AACCCAAGATTATCTTATC-TCTTTTTAAATTATT-TTTT
36566361 AGGATAAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 15 0.22
43 53 0.77
44 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.03, T:0.49
Consensus pattern (42 bp):
AACCCAAGATTATCTTATCTCTTTTTAAATTATTTTTTCAAA
Found at i:36570513 original size:18 final size:18
Alignment explanation
Indices: 36570490--36570529 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
36570480 CATTCATATG
**
36570490 ATATTCTGCTTAGGATGC
1 ATATTCTGCTTACCATGC
*
36570508 ATATTCTGTTTACCATGC
1 ATATTCTGCTTACCATGC
36570526 ATAT
1 ATAT
36570530 GGGTCGCATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.42
Consensus pattern (18 bp):
ATATTCTGCTTACCATGC
Found at i:36571716 original size:48 final size:48
Alignment explanation
Indices: 36571595--36571878 Score: 246
Period size: 48 Copynumber: 5.8 Consensus size: 48
36571585 GTAAGATGTT
* * * * * * *
36571595 GATGTCATGTCCTAGACATGGTCTTACACTGGCTCTCATATATTG-GTGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTAG--CTCACATATCGAG-GCC
* * *
36571645 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTTGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * ** *
36571693 AATACCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATAAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAG--CTCACATATCGAGGCC
* * **
36571743 GATGCCATGTTCCAAACATGGTTTTACACTAGCTCACATATCGAGGTT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * * * * * *
36571791 GATGCCATGTCCTAGACAAGGTCTTACATTAGCTCTCATATCAATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* *
36571839 GATGCCATGTTCCAAACGTGGTCTTACACTAGCTCACATA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
36571879 ACCCTGGTAT
Statistics
Matches: 188, Mismatches: 43, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
48 121 0.64
49 1 0.01
50 66 0.35
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
Found at i:36571770 original size:98 final size:98
Alignment explanation
Indices: 36571600--36571878 Score: 373
Period size: 98 Copynumber: 2.9 Consensus size: 98
36571590 ATGTTGATGT
* * *** *
36571600 CATGTCCTAGACATGGTCTTACACTGGCTCTCATATATTGGTGCTGATGCCATGTTCCAAACATG
1 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATAAATGCCGATGCCATGTTCCAAACATG
* *
36571665 GTCTTACACTAGCTCACATGTTGAGGCCAATAC
66 GTCTTACACTAGCTCACATATCGAGGCCAATAC
*
36571698 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATAAATGCCGATGCCATGTTCCAAACATG
1 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATAAATGCCGATGCCATGTTCCAAACATG
* *** *
36571763 GTTTTACACTAGCTCACATATCGAGGTTGATGC
66 GTCTTACACTAGCTCACATATCGAGGCCAATAC
* * * * *
36571796 CATGTCCTAGACAAGGTCTTACATTAGCTCT--CATATCAATGTCGATGCCATGTTCCAAACGTG
1 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATAAATGCCGATGCCATGTTCCAAACATG
36571859 GTCTTACACTAGCTCACATA
66 GTCTTACACTAGCTCACATA
36571879 ACCCTGGTAT
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
96 48 0.30
98 112 0.70
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (98 bp):
CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATAAATGCCGATGCCATGTTCCAAACATG
GTCTTACACTAGCTCACATATCGAGGCCAATAC
Found at i:36573666 original size:50 final size:49
Alignment explanation
Indices: 36573558--36573785 Score: 285
Period size: 49 Copynumber: 4.6 Consensus size: 49
36573548 TATGCATAGC
* *
36573558 AGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACGTAGT
** *
36573607 AGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGATACACGTAGT
* * * * * * *
36573657 AGCCTGCACTTAGTATTACACACGTGATCGAAGTTATCGGGTACGCATAAT
1 AGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGATACACGTAGT
* * * *
36573708 AGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACGTAGT
36573757 AGCCTGCACTTAGTACTACACACGTGACC
1 AGCCTGCACTTAGTACTACACACGTGACC
36573786 TCACAATAGA
Statistics
Matches: 150, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 67 0.45
50 48 0.32
51 35 0.23
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
AGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACGTAGT
Found at i:36576565 original size:15 final size:15
Alignment explanation
Indices: 36576547--36576579 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
36576537 GAAGGCCAGA
36576547 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
36576562 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
36576577 ATA
1 ATA
36576580 CGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36579748 original size:49 final size:49
Alignment explanation
Indices: 36579683--36579907 Score: 254
Period size: 49 Copynumber: 4.5 Consensus size: 49
36579673 GAATAGTACG
*
36579683 CTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGC
1 CTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGC
* ** ***
36579732 CTGCACTTAGTACTACACACATGACCTAACCATCTAATACACGTAGTAGC
1 CTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACGTAGTAGC
* * *
36579782 CTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTAC-GGATAGTAGC
1 CTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG-TAGTAGC
* * * ** *
36579833 TTGCACTTAGTACTACATATGCAAGCAATTATCCGGTACACGTAGTAGC
1 CTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGC
*
36579882 CTACACTTAGTACTACACACGTGACC
1 CTGCACTTAGTACTACACACGTGACC
36579908 TCACAATAGA
Statistics
Matches: 140, Mismatches: 31, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
49 60 0.43
50 47 0.34
51 33 0.24
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGC
Found at i:36579792 original size:50 final size:49
Alignment explanation
Indices: 36579683--36579801 Score: 166
Period size: 50 Copynumber: 2.4 Consensus size: 49
36579673 GAATAGTACG
** ** **
36579683 CTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGC
1 CTGCACTTAGTACTACACACATGACCAACCATCCAATACACGTAGTAGC
*
36579732 CTGCACTTAGTACTACACACATGACCTAACCATCTAATACACGTAGTAGC
1 CTGCACTTAGTACTACACACATGACC-AACCATCCAATACACGTAGTAGC
36579782 CTGCACTTAGTACTACACAC
1 CTGCACTTAGTACTACACAC
36579802 GTGATCGAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 24 0.39
50 38 0.61
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (49 bp):
CTGCACTTAGTACTACACACATGACCAACCATCCAATACACGTAGTAGC
Found at i:36595514 original size:49 final size:49
Alignment explanation
Indices: 36595456--36595838 Score: 630
Period size: 49 Copynumber: 7.9 Consensus size: 49
36595446 GTATGAGATG
*
36595456 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
36595505 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
36595554 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
36595603 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
36595650 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
36595699 TATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
36595746 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
36595795 TATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
36595839 TATATGTGTG
Statistics
Matches: 317, Mismatches: 13, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 88 0.28
49 229 0.72
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:36595686 original size:96 final size:96
Alignment explanation
Indices: 36595455--36595838 Score: 660
Period size: 96 Copynumber: 4.0 Consensus size: 96
36595445 TGTATGAGAT
* *
36595455 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
36595520 GCCTAATGGCCAATGTGATGAATGTGAAAGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
36595551 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
1 GTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
36595616 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
36595649 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
36595714 GCCTAATGGCCGATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* * *
36595745 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
* *
36595810 GCCTAATGGTCGATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
36595839 TATATGTGTG
Statistics
Matches: 278, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
96 185 0.67
98 93 0.33
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:36595871 original size:145 final size:145
Alignment explanation
Indices: 36595455--36595838 Score: 664
Period size: 145 Copynumber: 2.6 Consensus size: 145
36595445 TGTATGAGAT
*
36595455 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
* *
36595520 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGT
*
36595585 GATGAATGTGAAAGT
131 GATGAATGTGAAAGA
*
36595600 GTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATA
1 GTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
36595663 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGAT
64 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGAT
36595728 GTGATGAATGTGAAAGA
129 GTGATGAATGTGAAAGA
* *
36595745 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
*
36595810 GCCTAATGGTCGATGTGATGAATGTGAAA
66 GCCTAATGGCCGATGTGATGAATGTGAAA
36595839 TATATGTGTG
Statistics
Matches: 226, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
143 39 0.17
145 147 0.65
147 40 0.18
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (145 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGA
Found at i:36595887 original size:48 final size:48
Alignment explanation
Indices: 36595830--36595933 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
36595820 CGATGTGATG
36595830 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
36595878 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
36595926 AATGTGAA
1 AATGTGAA
36595934 TGTTGTAACA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:36596027 original size:37 final size:37
Alignment explanation
Indices: 36595973--36596100 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
36595963 AACTTGGAAA
*
36595973 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
36596011 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
36596048 TATGTCCAGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
36596085 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
36596101 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:36603984 original size:16 final size:17
Alignment explanation
Indices: 36603963--36604019 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
36603953 TCCATTACAT
36603963 TATTTTTATTAT-TATA
1 TATTTTTATTATATATA
*
36603979 TA-TTTTACTTATAAATTA
1 TATTTTTA-TTATATA-TA
36603997 TATTTTT-TATATATATA
1 TATTTTTAT-TATATATA
36604014 TATTTT
1 TATTTT
36604020 ATTTTCTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
15 5 0.15
16 6 0.18
17 10 0.29
18 9 0.26
19 4 0.12
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTTTTATTATATATA
Found at i:36604000 original size:18 final size:18
Alignment explanation
Indices: 36603975--36604022 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
36603965 TTTTTATTAT
36603975 TATATATTTTACTTATAAA
1 TATATATTTTA-TTATAAA
*
36603994 T-TATATTTT-TTATATA
1 TATATATTTTATTATAAA
36604010 TATATATTTTATT
1 TATATATTTTATT
36604023 TTCTGTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 7 0.27
17 8 0.31
18 10 0.38
19 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATATATTTTATTATAAA
Found at i:36604169 original size:17 final size:17
Alignment explanation
Indices: 36604147--36604181 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
36604137 TATATTTTAT
36604147 TCATATTTTATTACATA
1 TCATATTTTATTACATA
*
36604164 TCATATTTTATTATATA
1 TCATATTTTATTACATA
36604181 T
1 T
36604182 TATTCCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (17 bp):
TCATATTTTATTACATA
Done.