Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 135 of 345
Found at i:36604181 original size:12 final size:12
Alignment explanation
Indices: 36604137--36604235 Score: 55
Period size: 12 Copynumber: 8.1 Consensus size: 12
36604127 TTTATTTCAT
36604137 TATATTTTATTCA
1 TATATTTTATT-A
* *
36604150 TATTTTATTACATA
1 TATATT-TTA-TTA
36604164 TCATATTTTATTA
1 T-ATATTTTATTA
*
36604177 TATATTATTCCTTA
1 TATATT-TT-ATTA
36604191 TAGTA-TTT-TT-
1 TA-TATTTTATTA
*
36604201 TCT-TTTTATTA
1 TATATTTTATTA
*
36604212 TATATTATATTA
1 TATATTTTATTA
36604224 TATATTTT-TTA
1 TATATTTTATTA
36604235 T
1 T
36604236 TACTTATCAT
Statistics
Matches: 67, Mismatches: 9, Indels: 22
0.68 0.09 0.22
Matches are distributed among these distances:
9 4 0.06
10 3 0.04
11 8 0.12
12 19 0.28
13 12 0.18
14 14 0.21
15 7 0.10
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:36604236 original size:19 final size:19
Alignment explanation
Indices: 36604214--36604269 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
36604204 TTTTATTATA
36604214 TATTATATTATATATTTTT
1 TATTATATTATATATTTTT
* **
36604233 TATTA-CTTATCATATGGTT
1 TATTATATTAT-ATATTTTT
36604252 TA-TATTATTATATATTTT
1 TATTA-TATTATATATTTT
36604270 GTTTACAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
18 6 0.21
19 18 0.64
20 4 0.14
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (19 bp):
TATTATATTATATATTTTT
Found at i:36611810 original size:33 final size:35
Alignment explanation
Indices: 36611753--36611823 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 35
36611743 ACACATTCTT
36611753 TATTCTCGTCAGATCAATCTCACATAAAT-ATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
36611787 TATTCTCGTCAGAT-AATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
36611821 TAT
1 TAT
36611824 ATCACATACC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 14 0.39
34 22 0.61
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:36616918 original size:40 final size:40
Alignment explanation
Indices: 36616835--36617055 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
36616825 ACCCAAGTAT
** * *
36616835 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36616873 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
36616913 CTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
36616953 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
36616993 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
36617034 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
36617056 CATTCGAATA
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 95 0.63
41 29 0.19
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36619160 original size:58 final size:58
Alignment explanation
Indices: 36619038--36619206 Score: 295
Period size: 58 Copynumber: 2.9 Consensus size: 58
36619028 GTGCCCGCTG
* *
36619038 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
36619095 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
36619153 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
36619207 TAATCATTCG
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
57 30 0.28
58 77 0.72
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:36619194 original size:29 final size:29
Alignment explanation
Indices: 36619045--36619203 Score: 121
Period size: 29 Copynumber: 5.5 Consensus size: 29
36619035 CTGACCGATC
* * *
36619045 TCGCACACATAGTGCTCGGTTGAA-GAAC
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
36619073 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
36619101 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
36619131 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
36619159 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
36619189 TTGCACACACAGTGC
1 TCGCACACACAGTGC
36619204 CTCTAATCAT
Statistics
Matches: 100, Mismatches: 22, Indels: 17
0.72 0.16 0.12
Matches are distributed among these distances:
28 27 0.27
29 64 0.64
30 9 0.09
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:36619421 original size:43 final size:43
Alignment explanation
Indices: 36619360--36619495 Score: 200
Period size: 43 Copynumber: 3.2 Consensus size: 43
36619350 CCTTGCTCGA
** * * *
36619360 ATCACCGGCATTAAGCCTGTTAGGGACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
36619403 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
36619446 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
36619489 ATCACCG
1 ATCACCG
36619496 AGTTTCATGC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.32, C:0.33, G:0.23, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:36620932 original size:35 final size:35
Alignment explanation
Indices: 36620893--36620965 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
36620883 ACACATTCTT
*
36620893 TATTCTCGTCAAATCAATCTTACATAAATAATATA
1 TATTCTCGTCAAATCAATCTCACATAAATAATATA
* *
36620928 TATTCTCGTCAGATTAATCTCACATAAATAATATA
1 TATTCTCGTCAAATCAATCTCACATAAATAATATA
36620963 TAT
1 TAT
36620966 ATCACATACC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.41, C:0.16, G:0.04, T:0.38
Consensus pattern (35 bp):
TATTCTCGTCAAATCAATCTCACATAAATAATATA
Found at i:36622911 original size:40 final size:39
Alignment explanation
Indices: 36622746--36622929 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
36622736 AAATTGAATG
* * *
36622746 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
36622786 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36622826 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
36622866 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36622905 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36622930 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36622954 original size:80 final size:81
Alignment explanation
Indices: 36622786--36622974 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
36622776 GCTGGAAATT
* * * *
36622786 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
36622851 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
36622867 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
36622930 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
36622946 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
36622975 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:36627447 original size:48 final size:47
Alignment explanation
Indices: 36627395--36627568 Score: 240
Period size: 48 Copynumber: 3.6 Consensus size: 47
36627385 CATGTCAGTG
* *
36627395 CCGATGCCATGTCCCAGACATGATCTTACACTAGCACACATATCAGCA
1 CCGATGCCATGTCCCAGACATGATCTTACACTGGCTCACATATCA-CA
* *
36627443 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCCACG
1 CCGATGCCATGTCCCAGACATGATCTTACACTGGCTCACATAT-CACA
* * * *
36627491 CCGATGGCATGTCCCAGGCATGATCTTATATTGGCTCACATATCAACA
1 CCGATGCCATGTCCCAGACATGATCTTACACTGGCTCACATATC-ACA
*
36627539 CCGATGCCATGTCCCAGACATGGTCTTACA
1 CCGATGCCATGTCCCAGACATGATCTTACA
36627569 TGGGACCTTA
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
47 1 0.01
48 107 0.97
49 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGATCTTACACTGGCTCACATATCACA
Found at i:36627494 original size:96 final size:96
Alignment explanation
Indices: 36627394--36627568 Score: 287
Period size: 96 Copynumber: 1.8 Consensus size: 96
36627384 TCATGTCAGT
*
36627394 GCCGATGCCATGTCCCAGACATGATCTTACACTAGCACACATATCAGCACCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGATCTTACACTAGCACACATATCAACACCGATGCCATGTCCCA
36627459 GACATGGTCTTACACTGGCTCACATATCCAC
66 GACATGGTCTTACACTGGCTCACATATCCAC
* * * * * *
36627490 GCCGATGGCATGTCCCAGGCATGATCTTATATTGGCTCACATATCAACACCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGATCTTACACTAGCACACATATCAACACCGATGCCATGTCCCA
36627555 GACATGGTCTTACA
66 GACATGGTCTTACA
36627569 TGGGACCTTA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 72 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGATCTTACACTAGCACACATATCAACACCGATGCCATGTCCCA
GACATGGTCTTACACTGGCTCACATATCCAC
Found at i:36633754 original size:20 final size:20
Alignment explanation
Indices: 36633729--36633774 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
36633719 TAAATGAAAT
*
36633729 AAAATGGGGAAAATAACACA
1 AAAATGGGGAAAACAACACA
36633749 AAAATGGGGAAAACAACACA
1 AAAATGGGGAAAACAACACA
36633769 AAAATG
1 AAAATG
36633775 ATCATCTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.61, C:0.11, G:0.20, T:0.09
Consensus pattern (20 bp):
AAAATGGGGAAAACAACACA
Found at i:36634726 original size:46 final size:46
Alignment explanation
Indices: 36634676--36634920 Score: 166
Period size: 46 Copynumber: 5.3 Consensus size: 46
36634666 GTCGAGTCTA
* * *
36634676 AGTTCACTTATGGATGCGAACGTCCAAACTTGTTGAGCTGAGTCCG
1 AGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCCG
* * * * *
36634722 AGTTC-GTGA--GATG-TAACTAGGCATCCGAGCTCGTTGAGTTGAGTTCG
1 AGTTCACTTATGGATGCGAAC---G--TCCGAACTCGTTGAGTTGAGTCCG
*
36634769 AGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGTTGAGTCCG
1 AGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCCG
* * * * **
36634815 AGTTCA-TGA--GATGTAACGAGGCATCC-AAGCTCATTGAGTTGAGTTTG
1 AGTTCACTTATGGATG---CGA-ACGTCCGAA-CTCGTTGAGTTGAGTCCG
* *
36634862 AGTTCACTTATGGATACGAACG-CTCGAGCTCGTTGAGTTGAGTCCG
1 AGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAGTTGAGTCCG
*
36634908 AGTTCGCTTATGG
1 AGTTCACTTATGG
36634921 GCGGCTTACA
Statistics
Matches: 152, Mismatches: 28, Indels: 38
0.70 0.13 0.17
Matches are distributed among these distances:
42 3 0.02
43 8 0.05
45 6 0.04
46 66 0.43
47 54 0.36
48 5 0.03
50 7 0.05
51 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (46 bp):
AGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCCG
Found at i:36634765 original size:47 final size:46
Alignment explanation
Indices: 36634708--36634867 Score: 148
Period size: 47 Copynumber: 3.4 Consensus size: 46
36634698 TCCAAACTTG
* * *
36634708 TTGAGCTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCATGAGATGTAAC-AGGCATCCGAGCTCA
* * * *
36634755 TTGAGTTGAGTTCGAGTTCACTTATGGATGCGAAC--G--TCCGAACTCA
1 TTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACAGGCATCCGAGCTCA
*
36634801 TTGAGTTGAGTCCGAGTTCATGAGATGTAACGAGGCATCCAAGCTCA
1 TTGAGTTGAGTCCGAGTTCATGAGATGTAAC-AGGCATCCGAGCTCA
**
36634848 TTGAGTTGAGTTTGAGTTCA
1 TTGAGTTGAGTCCGAGTTCA
36634868 CTTATGGATA
Statistics
Matches: 90, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 27 0.30
47 43 0.48
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCATGAGATGTAACAGGCATCCGAGCTCA
Found at i:36634780 original size:93 final size:93
Alignment explanation
Indices: 36634648--36634913 Score: 365
Period size: 93 Copynumber: 2.9 Consensus size: 93
36634638 CGGATATTTG
* * * * * *
36634648 GGCATCCAAACTCATTAAGTCGAG-TCTAAGTTCACTTATGGATGCGAACGTCCAAACTTGTTGA
1 GGCATCCAAGCTCATTGAGTTGAGTTC-GAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGA
* *
36634712 GCTGAGTCCGAGTTCGTGAGATGTAACTA
65 GTTGAGTCCGAGTTCGTGAGATGTAACGA
* * *
36634741 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
1 GGCATCCAAGCTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
36634806 TTGAGTCCGAGTTCATGAGATGTAACGA
66 TTGAGTCCGAGTTCGTGAGATGTAACGA
* * *
36634834 GGCATCCAAGCTCATTGAGTTGAGTTTGAGTTCACTTATGGATACGAACG-CTCGAGCTCGTTGA
1 GGCATCCAAGCTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
36634898 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
36634914 CTTATGGGCG
Statistics
Matches: 152, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
92 1 0.01
93 149 0.98
94 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GGCATCCAAGCTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACGA
Found at i:36638229 original size:33 final size:32
Alignment explanation
Indices: 36638166--36638230 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 32
36638156 TTAATGACTT
* *
36638166 CAATTGAGATATTTTGGTTACTTAAGGAAATG
1 CAATTGAGATATTTTGATTACATAAGGAAATG
*
36638198 CAATTGAGATGGTTTTGATTAGCATAA-GAAATG
1 CAATTGAGAT-ATTTTGATTA-CATAAGGAAATG
36638231 AATAGTAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 10 0.36
33 14 0.50
34 4 0.14
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (32 bp):
CAATTGAGATATTTTGATTACATAAGGAAATG
Found at i:36640700 original size:46 final size:46
Alignment explanation
Indices: 36640631--36640895 Score: 228
Period size: 46 Copynumber: 5.7 Consensus size: 46
36640621 ATTGGCATCT
*
36640631 GAACTCGTTG-GTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* *
36640676 GAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCC
** *
36640723 GAGGTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
36640769 GAACTCGTTGAGTTGATTCCGAG-TC-C--GTGAGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---G--TCC
* * *
36640816 GAGCTCATTGAGTTGAGTCC-ATGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGA-GTTCACTTATGGATGCGAACGTCC
*
36640862 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36640896 GAGGGTTACA
Statistics
Matches: 176, Mismatches: 21, Indels: 45
0.73 0.09 0.19
Matches are distributed among these distances:
42 8 0.05
43 8 0.05
44 1 0.01
45 16 0.09
46 71 0.40
47 49 0.28
48 6 0.03
49 1 0.01
50 8 0.05
51 8 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
Found at i:36640739 original size:47 final size:47
Alignment explanation
Indices: 36640673--36640835 Score: 165
Period size: 47 Copynumber: 3.5 Consensus size: 47
36640663 GATGCGAACG
* *
36640673 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
* * *
36640720 TCCGAGGTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGGCA
* * * * *
36640766 TCCGAACTCGTTGAGTTGATTCCGAGTCCGTGAGATGTAACTAGGCA
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
36640813 TCCGAGCTCATTGAGTTGAGTCC
1 TCCGAGCTCATTGAGTTGAGTCC
36640836 ATGTTCACTT
Statistics
Matches: 91, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 24 0.26
47 47 0.52
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAGCTCATTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
Found at i:36640747 original size:93 final size:93
Alignment explanation
Indices: 36640624--36640888 Score: 417
Period size: 93 Copynumber: 2.9 Consensus size: 93
36640614 TTCGGATATT
* * * *
36640624 GGCATCTGAACTCGTTG-GTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
36640688 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
*
36640716 GGCATCCGAGGTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* * *
36640781 TTGATTCCGAGTCCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* *
36640809 GGCATCCGAGCTCATTGAGTTGAGTCC-ATGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
1 GGCATCCGAGCTCATTGAGTTGAGTCCGA-GTTCACTTATGGATGCGAACGTCCGAACTCGTTGA
36640873 GTTGAGTCCGAGTTCA
65 GTTGAGTCCGAGTTCA
36640889 CTTATGGGAG
Statistics
Matches: 157, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
92 14 0.09
93 143 0.91
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:36641797 original size:19 final size:19
Alignment explanation
Indices: 36641773--36641811 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
36641763 TAATAGCTGT
36641773 AAAACTAATTAGGAATCAA
1 AAAACTAATTAGGAATCAA
*
36641792 AAAACTAATTTGGAATCAA
1 AAAACTAATTAGGAATCAA
36641811 A
1 A
36641812 CTTTATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.23
Consensus pattern (19 bp):
AAAACTAATTAGGAATCAA
Found at i:36643916 original size:30 final size:29
Alignment explanation
Indices: 36643880--36643936 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
36643870 CATAGATTTT
36643880 ATCTTGGATTTCTTTATTCTGGGTTTCTCC
1 ATCTTGGATTTCTTTATT-TGGGTTTCTCC
*
36643910 ATCTTGGATTTCTTTATTTGGTTTTCT
1 ATCTTGGATTTCTTTATTTGGGTTTCT
36643937 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.58
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTTGGGTTTCTCC
Found at i:36643935 original size:14 final size:15
Alignment explanation
Indices: 36643877--36643937 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
36643867 CAGCATAGAT
36643877 TTTATCTTGGATTTC
1 TTTATCTTGGATTTC
*
36643892 TTTAT-TCTGGGTTTC
1 TTTATCT-TGGATTTC
**
36643907 TCCATCTTGGATTTC
1 TTTATCTTGGATTTC
*
36643922 TTTAT-TTGGTTTTC
1 TTTATCTTGGATTTC
36643936 TT
1 TT
36643938 GTTATCTTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
14 11 0.30
15 25 0.68
16 1 0.03
ACGTcount: A:0.10, C:0.15, G:0.15, T:0.61
Consensus pattern (15 bp):
TTTATCTTGGATTTC
Found at i:36647107 original size:46 final size:46
Alignment explanation
Indices: 36647035--36647303 Score: 221
Period size: 46 Copynumber: 5.8 Consensus size: 46
36647025 TATTTGGGCA
* *
36647035 TCCGAACTCATTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* * * * * *
36647081 TCTGAACTCATTAAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC---G
* * * * *
36647126 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* * * *
36647174 TCTGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC---G
*
36647219 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
*
36647267 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
36647304 TCGGGGAGAA
Statistics
Matches: 176, Mismatches: 29, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.05
45 6 0.03
46 86 0.49
47 50 0.28
48 6 0.03
50 8 0.05
51 6 0.03
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
Found at i:36647147 original size:47 final size:47
Alignment explanation
Indices: 36647094--36647249 Score: 185
Period size: 47 Copynumber: 3.3 Consensus size: 47
36647084 GAACTCATTA
*
36647094 AGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAGCTTGTTG
1 AGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTG
* * * * * * *
36647141 AGTTGAGTCCGAGTTCAATTATGGATGCAA--A--CGTCTGAACTCGTTG
1 AGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCCGAGCTCGTTG
36647187 AGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTG
1 AGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTG
36647234 AGTTGAGTCTGAGTTC
1 AGTTGAGTCTGAGTTC
36647250 ACTTATGGAT
Statistics
Matches: 87, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.07
45 3 0.03
46 26 0.30
47 43 0.49
48 3 0.03
50 6 0.07
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.31
Consensus pattern (47 bp):
AGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTG
Found at i:36647191 original size:93 final size:93
Alignment explanation
Indices: 36647031--36647296 Score: 442
Period size: 93 Copynumber: 2.9 Consensus size: 93
36647021 AAGATATTTG
* * * * *
36647031 GGCATCCGAACTCATTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACGTCTGAACTCATTAAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
36647096 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
* * * *
36647124 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCAATTATGGATGCAAACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
36647189 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
*
36647217 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
36647282 TTGAGTCTGAGTTCG
66 TTGAGTCTGAGTTCG
36647297 CTTATGGTCG
Statistics
Matches: 159, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 159 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
TTGAGTCTGAGTTCGTGAGATGTAACTA
Found at i:36647554 original size:46 final size:47
Alignment explanation
Indices: 36647388--36647546 Score: 175
Period size: 46 Copynumber: 3.4 Consensus size: 47
36647378 ATCTGAACTG
* **
36647388 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-TCCGAATTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCTCCGAGCTC
* * * * *
36647434 GTTGAGTTGAGTCCGAGTTCA-TGAGATGTA-AC-TAGGCATCCGAGCTT
1 GTTGAGTTGAGTCCGAGTTCACT--TATGGATACGAACGC-TCCGAGCTC
*
36647481 GTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACGCT-CGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCTCCGAGCTC
36647527 GTTGAGTTGAGTCCGAGTTC
1 GTTGAGTTGAGTCCGAGTTC
36647547 TTTTATGGGC
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.03
46 51 0.56
47 33 0.36
48 4 0.04
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (47 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCTCCGAGCTC
Found at i:36649176 original size:39 final size:39
Alignment explanation
Indices: 36649087--36649264 Score: 157
Period size: 39 Copynumber: 4.6 Consensus size: 39
36649077 AATCAAGCAT
** ** * * *
36649087 CTTCGGGGTTTAG-CCGGATATAACCACTCGCACAAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAAATGC
* *
36649125 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AAATGC
36649165 CTT-GGGACTTAGCCCGGATATAGTCACTAGC-AAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAAATGC
* * * * * *
36649202 CTTC-GGATCTTAGTCCAGATGTAGCCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCA-AAATGC
36649243 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
36649265 CATTCGAGTA
Statistics
Matches: 113, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
37 12 0.11
38 26 0.23
39 45 0.40
40 7 0.06
41 20 0.18
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAAATGC
Found at i:36653286 original size:40 final size:39
Alignment explanation
Indices: 36653241--36653448 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
36653231 CGGAATACAA
*
36653241 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
36653281 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
36653321 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
36653361 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
36653401 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
36653441 CCGGATAT
1 CCGGATAT
36653449 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36653381 original size:80 final size:81
Alignment explanation
Indices: 36653241--36653446 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
36653231 CGGAATACAA
* * *
36653241 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
36653305 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
36653321 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
36653384 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
36653401 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
36653447 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:36661280 original size:40 final size:40
Alignment explanation
Indices: 36661235--36661357 Score: 183
Period size: 40 Copynumber: 3.1 Consensus size: 40
36661225 CGGAATACAA
* *
36661235 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
36661275 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
*
36661315 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
36661355 CCG
1 CCG
36661358 CATGTTCGGG
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:36661439 original size:40 final size:40
Alignment explanation
Indices: 36661381--36661456 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
36661371 GCATGTAGTC
* *
36661381 ACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATT
1 ACTAGCACAAATGCCTTCGGGACTTAACCCGGATATAATT
* * *
36661421 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 ACTAGCACAAATGCCTTCGGGACTTAACCCGGATAT
36661457 CATTCAATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (40 bp):
ACTAGCACAAATGCCTTCGGGACTTAACCCGGATATAATT
Found at i:36668379 original size:39 final size:40
Alignment explanation
Indices: 36668321--36668500 Score: 125
Period size: 40 Copynumber: 4.5 Consensus size: 40
36668311 AATCAAGCAT
* *
36668321 CTTCGGGT-TTAG-CCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGTCTTAGCCCGGATATAACCACTAGCATAAAGGC
*** *
36668358 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACCACTAGCATAAAGGC
* * * * **
36668398 CTTCGGGACTTAGCCCGGATATAGTCC-TTAGCATTAATTC
1 CTTCGGGTCTTAGCCCGGATATA-ACCACTAGCATAAAGGC
* * * * * * * *
36668438 CTTCGGATGTTAGTCCGGATGTAGCCGCTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAACCAC-TAGCATAAAGGC
*
36668479 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
36668501 CACTCGAGTA
Statistics
Matches: 108, Mismatches: 29, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
37 8 0.07
38 4 0.04
39 17 0.16
40 53 0.49
41 26 0.24
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACCACTAGCATAAAGGC
Found at i:36668497 original size:41 final size:40
Alignment explanation
Indices: 36668356--36668500 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
36668346 CTCGCACAAG
* *
36668356 GCCTTCGGGTCTTAGCCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-CTTAGCATAAAT
*
36668396 GCCTTCGGGACTTAGCCCGGATATAGTCCTTAGCATTAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCCTTAGCATAAAT
* * * * * * *
36668436 TCCTTC-GGATGTTAGTCCGGATGTAGCCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTC-CTTAGCATAAAT
36668477 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
36668501 CACTCGAGTA
Statistics
Matches: 86, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 4 0.05
40 54 0.63
41 25 0.29
42 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCCTTAGCATAAAT
Found at i:36672114 original size:55 final size:53
Alignment explanation
Indices: 36671984--36672116 Score: 126
Period size: 55 Copynumber: 2.5 Consensus size: 53
36671974 AGGATACCAA
* * *
36671984 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAA-GAAATCAT
* * * * * *
36672038 GTAGGACAATGTCAAGACATGGCTTTGATAAACTACTATAAGG-AA-AATATCCCAT
1 GTAAGACCATGCCAAGGCATGGCATTGAT-AACTACTACAAGGCAAGAA-AT--CAT
36672093 GTAAGACCATGCCAAGGCATGGCA
1 GTAAGACCATGCCAAGGCATGGCA
36672117 ATAGTGAGCT
Statistics
Matches: 61, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
52 2 0.03
53 2 0.03
54 25 0.41
55 32 0.52
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAGAAATCAT
Found at i:36678657 original size:40 final size:40
Alignment explanation
Indices: 36678555--36678738 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
36678545 AAATTGAATG
* * * * *
36678555 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
36678595 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
36678635 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
36678675 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
36678715 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36678739 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:36686763 original size:40 final size:40
Alignment explanation
Indices: 36686661--36686844 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
36686651 AAATTGAATG
* * * * *
36686661 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
36686701 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
36686741 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
36686781 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
36686821 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36686845 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:36690879 original size:11 final size:11
Alignment explanation
Indices: 36690850--36690924 Score: 78
Period size: 11 Copynumber: 6.8 Consensus size: 11
36690840 CTTAGCTCAC
*
36690850 TGCTGTTTTGC
1 TGCTGTTTTGG
* *
36690861 TGCAGTTTGGG
1 TGCTGTTTTGG
36690872 TGCTGTTTTGG
1 TGCTGTTTTGG
* *
36690883 TGTTGTTTGGG
1 TGCTGTTTTGG
36690894 TGCTGTTTTGG
1 TGCTGTTTTGG
* *
36690905 TGCTATTTTGC
1 TGCTGTTTTGG
*
36690916 TGCTATTTT
1 TGCTGTTTT
36690925 TTGTCGTGTT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 53 1.00
ACGTcount: A:0.04, C:0.11, G:0.32, T:0.53
Consensus pattern (11 bp):
TGCTGTTTTGG
Found at i:36690904 original size:22 final size:22
Alignment explanation
Indices: 36690850--36690907 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
36690840 CTTAGCTCAC
*
36690850 TGCTGTTTTGCTGCAGTTTGGG
1 TGCTGTTTTGGTGCAGTTTGGG
**
36690872 TGCTGTTTTGGTGTTGTTTGGG
1 TGCTGTTTTGGTGCAGTTTGGG
36690894 TGCTGTTTTGGTGC
1 TGCTGTTTTGGTGC
36690908 TATTTTGCTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.02, C:0.10, G:0.38, T:0.50
Consensus pattern (22 bp):
TGCTGTTTTGGTGCAGTTTGGG
Found at i:36691808 original size:53 final size:53
Alignment explanation
Indices: 36691645--36691815 Score: 135
Period size: 53 Copynumber: 3.2 Consensus size: 53
36691635 GGCTTGACAT
* * * * * * * *
36691645 TGGTAAGTTCTACAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGTAT
1 TGGTAAGTTC-ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAA
* * * * * * *
36691699 TGATAAACTACTATAAGGCAAATATCCCATGTAAGACCATGCCAAGGCATGGCAA
1 TGGT-AAGTTC-ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAA
* * * * *
36691754 TGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCGTGTCAAGACATGTCAA
1 TGGTAAGTTCATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAA
36691807 TGGTAAGTT
1 TGGTAAGTT
36691816 TAAAAAGGAA
Statistics
Matches: 90, Mismatches: 26, Indels: 3
0.76 0.22 0.03
Matches are distributed among these distances:
53 43 0.48
54 6 0.07
55 41 0.46
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (53 bp):
TGGTAAGTTCATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAA
Found at i:36694798 original size:41 final size:42
Alignment explanation
Indices: 36694687--36694806 Score: 131
Period size: 41 Copynumber: 2.8 Consensus size: 42
36694677 CTTTAATGAT
36694687 TAGCCGAAGCTAAAATGATCCTGCACACTTAGTGCCATCTCAAA
1 TAGCCGAAGCTAAAATGATCCTGCACACTTAGTG-CA-CTCAAA
***
36694731 TAGCCGAAGCTACCTTAGTAT-C-GCACACTTAGTGC-CT-AATA
1 TAGCCGAAGCTAAAAT-G-ATCCTGCACACTTAGTGCACTCAA-A
*
36694772 TAGCCAAAGCTAAAATGATCCTGCACACTTAGTGC
1 TAGCCGAAGCTAAAATGATCCTGCACACTTAGTGC
36694807 TATTTAAAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
39 2 0.03
40 4 0.06
41 28 0.44
43 1 0.02
44 25 0.39
45 2 0.03
46 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
TAGCCGAAGCTAAAATGATCCTGCACACTTAGTGCACTCAAA
Found at i:36697967 original size:43 final size:44
Alignment explanation
Indices: 36697916--36698074 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 44
36697906 GATTACCGAA
*
36697916 ATGTGATTACATGTCAGACCATGTCTGGGACATTGGCATTCTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTCTAT
* * * *
36697960 -TGTGATTACGTGTAAGACCATGTCTAGGAAATTGGCATTGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTCTAT
* *** * * *
36698002 ATATGATTTTGTGTCAGACCATGTCTGGGACAGTGGCA-TCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTCTAT
* *
36698045 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
36698075 TATGGAATTT
Statistics
Matches: 92, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
42 2 0.02
43 90 0.98
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTCTAT
Found at i:36698975 original size:24 final size:24
Alignment explanation
Indices: 36698943--36698990 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36698933 GGCAAAAGCT
36698943 TATTGCCTCATAATTCATATACCA
1 TATTGCCTCATAATTCATATACCA
36698967 TATTGCCTCATAATTCATATACCA
1 TATTGCCTCATAATTCATATACCA
36698991 AAACCATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (24 bp):
TATTGCCTCATAATTCATATACCA
Found at i:36699532 original size:44 final size:44
Alignment explanation
Indices: 36699469--36699555 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
36699459 AGACTTTTCG
*
36699469 AAGATTAGCCGAAGCTATAACAATTCTGCACACTTAGTGCTTTA
1 AAGATTAGCCGAAGCTATAACAATTCCGCACACTTAGTGCTTTA
* *
36699513 AAGATTAGTCGAAGCTATAATAATTCCGCACACTTAGTGCTTT
1 AAGATTAGCCGAAGCTATAACAATTCCGCACACTTAGTGCTTT
36699556 CTCAATTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (44 bp):
AAGATTAGCCGAAGCTATAACAATTCCGCACACTTAGTGCTTTA
Found at i:36708329 original size:16 final size:17
Alignment explanation
Indices: 36708298--36708330 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36708288 GAAATGTAAA
36708298 TATTAATATGATGACTT
1 TATTAATATGATGACTT
*
36708315 TATTTATAT-ATGACTT
1 TATTAATATGATGACTT
36708331 ACTAAGCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.06, G:0.09, T:0.52
Consensus pattern (17 bp):
TATTAATATGATGACTT
Found at i:36710769 original size:47 final size:46
Alignment explanation
Indices: 36710715--36710906 Score: 131
Period size: 47 Copynumber: 4.0 Consensus size: 46
36710705 ATGGCAGCAT
* *
36710715 GTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCG
1 GTGAAATGTGATTTCCGTATAAGACCATAGCTGGGATATGGCATCG
* * *
36710761 GAGAAAATGAT-ATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 GTG-AAATG-TGA--T--TTCCGTATAAGACCATAGCTGGGATATGGCATC-G
* * * * *
36710813 TGTGATATGTG-CTACTGTATAAGACCATATCTGGGATATGGCATCAG
1 -GTGAAATGTGATTTCCGTATAAGACCATAGCTGGGATATGGCATC-G
* * * * *
36710860 TGTGATATGTGA--TCCGTGTAAGACCATGGCTGGGCTATGGCCTCG
1 -GTGAAATGTGATTTCCGTATAAGACCATAGCTGGGATATGGCATCG
36710905 GT
1 GT
36710907 ATGTGATATG
Statistics
Matches: 117, Mismatches: 19, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
44 2 0.02
45 1 0.01
46 27 0.23
47 48 0.41
48 1 0.01
49 1 0.01
51 30 0.26
52 5 0.04
53 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (46 bp):
GTGAAATGTGATTTCCGTATAAGACCATAGCTGGGATATGGCATCG
Found at i:36714488 original size:15 final size:15
Alignment explanation
Indices: 36714468--36714536 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
36714458 GTATCTTGGG
36714468 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
36714483 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
36714498 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
36714513 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
36714528 TTTCTTTAT
1 TTTCTTTAT
36714537 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:36714537 original size:30 final size:30
Alignment explanation
Indices: 36714459--36714555 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
36714449 CATAGTATCG
* * * *
36714459 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
36714489 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
36714519 TATCTTGGATTTCTTTATTC-GGTTTTCTTC
1 TATCTTGGATTTCTTTATTCTGGATTTC-TC
36714549 TTATCTT
1 -TATCTT
36714556 TGCTCCATAA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
29 7 0.12
30 43 0.75
31 7 0.12
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:36717380 original size:47 final size:47
Alignment explanation
Indices: 36717311--36717461 Score: 171
Period size: 47 Copynumber: 3.2 Consensus size: 47
36717301 CGGAGAAATA
* *
36717311 TGATATGTGCTTCCGTATAAGACCATAT-TCGGGATATGGCATCGGTG
1 TGATATGTGCTACCGTATAAGACCATATCT-GGGATATGGCATCAGTG
*
36717358 TGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAGTG
1 TGATATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCAGTG
* * ** * * *
36717405 TGATATGTGAT-CCGTGTAAGACCATGGCTGGGCTATGGCCTCGGTATG
1 TGATATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCAG--TG
36717453 TGATATGTG
1 TGATATGTG
36717462 ACTATGTGCA
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
46 26 0.29
47 52 0.58
48 12 0.13
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (47 bp):
TGATATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCAGTG
Found at i:36719358 original size:12 final size:12
Alignment explanation
Indices: 36719341--36719389 Score: 62
Period size: 12 Copynumber: 3.8 Consensus size: 12
36719331 GGGGGCGTTA
36719341 CACATGGGCTGG
1 CACATGGGCTGG
*
36719353 CACATGGGTGTGTGG
1 CACAT-GG-G-CTGG
36719368 CACATGGGCTGG
1 CACATGGGCTGG
36719380 CACATGGGCT
1 CACATGGGCT
36719390 TGTGACCCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 18 0.56
13 3 0.09
14 3 0.09
15 8 0.25
ACGTcount: A:0.16, C:0.22, G:0.41, T:0.20
Consensus pattern (12 bp):
CACATGGGCTGG
Found at i:36722174 original size:2 final size:2
Alignment explanation
Indices: 36722167--36722191 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36722157 GAGACTAGTC
36722167 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
36722192 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36723452 original size:63 final size:64
Alignment explanation
Indices: 36723273--36723454 Score: 194
Period size: 66 Copynumber: 2.8 Consensus size: 64
36723263 CATATAGTTC
* * * *
36723273 GCTCTCTTGTAC-ACAT-GTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATCCCGT
36723334 A
64 A
* * * *
36723335 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCG
36723400 TA
63 TA
* *
36723402 GCTCTCTT-TCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT
36723455 CATAATGTCT
Statistics
Matches: 99, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
61 1 0.01
62 14 0.14
63 31 0.31
66 34 0.34
67 17 0.17
68 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:36744444 original size:29 final size:29
Alignment explanation
Indices: 36744411--36744513 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
36744401 GTGACGAGAT
*
36744411 TGGCACTAAGTGTGCGTTCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36744440 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
36744469 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
36744498 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
36744514 AGTTCGGAGG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36755211 original size:39 final size:40
Alignment explanation
Indices: 36755154--36755243 Score: 114
Period size: 39 Copynumber: 2.3 Consensus size: 40
36755144 GTATGAGATT
*
36755154 GAAAATATATCCGGACATGA-AGTCCGCAGGCTATATGGTG
1 GAAAATATATCCGAACATGAGA-TCCGCAGGCTATATGGTG
* * *
36755194 GAAAA-ATATCTGAACATGAGATCCGCAGGCTATATGCTA
1 GAAAATATATCCGAACATGAGATCCGCAGGCTATATGGTG
36755233 G-AAATATATCC
1 GAAAATATATCC
36755244 AGACTTAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
38 3 0.07
39 34 0.79
40 6 0.14
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (40 bp):
GAAAATATATCCGAACATGAGATCCGCAGGCTATATGGTG
Found at i:36757752 original size:34 final size:34
Alignment explanation
Indices: 36757710--36757777 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
36757700 AGGAGAAAGA
36757710 AAAAGAATAAAATGGTGGAAATAGGGGCTATGGT
1 AAAAGAATAAAATGGTGGAAATAGGGGCTATGGT
* * *
36757744 AAAAGAATAAAATTGTGGAAATGGGGGGTATGGT
1 AAAAGAATAAAATGGTGGAAATAGGGGCTATGGT
36757778 CGGTTTGGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.43, C:0.01, G:0.34, T:0.22
Consensus pattern (34 bp):
AAAAGAATAAAATGGTGGAAATAGGGGCTATGGT
Found at i:36762007 original size:50 final size:50
Alignment explanation
Indices: 36761896--36762076 Score: 203
Period size: 50 Copynumber: 3.7 Consensus size: 50
36761886 CAATACATCT
* * * * *
36761896 GAGCTAGTCTAAGACCATGTTTGGGACATGGCATTGGC-TTGATAT----
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATAAGA
* *
36761941 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATA-AAGGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATAA-GA
* * * *
36761991 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCAGCCTTGATATAAGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATAAGA
*
36762041 GAGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
36762077 ATATCTGATA
Statistics
Matches: 113, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
45 32 0.28
46 5 0.04
50 74 0.65
51 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (50 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATAAGA
Found at i:36762327 original size:139 final size:139
Alignment explanation
Indices: 36762077--36762357 Score: 508
Period size: 139 Copynumber: 2.0 Consensus size: 139
36762067 CATGGCATCG
* * * *
36762077 ATATCTGATAAGATGTAAGACCATATCTAGGATATGGCATTGTACGAGCTATATGTGATTATCAA
1 ATATCTAATAAGATGTAAGACCATATCTAGAATATGACATTGTACGAGATATATGTGATTATCAA
*
36762142 GTATTCGTAATGATTCTGAATGGTTCAACGGGCATATTCAAGACGAGAATAAAAGTATGATCAGA
66 GTATTCGTAATGATTCTGAATGGTTCAACGAGCATATTCAAGACGAGAATAAAAGTATGATCAGA
36762207 ATAAGCAAT
131 ATAAGCAAT
*
36762216 ATATCTAATAATATGTAAGACCATATCTAGAATATGACATTGTACGAGATATATGTGATTATCAA
1 ATATCTAATAAGATGTAAGACCATATCTAGAATATGACATTGTACGAGATATATGTGATTATCAA
36762281 GTATTCGTAATGATTCTGAATGGTTCAACGAGCATATTCAAGACGAGAATAAAAGTATGATCAGA
66 GTATTCGTAATGATTCTGAATGGTTCAACGAGCATATTCAAGACGAGAATAAAAGTATGATCAGA
36762346 ATAAGCAAT
131 ATAAGCAAT
36762355 ATA
1 ATA
36762358 GGTACGTACA
Statistics
Matches: 136, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 136 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.30
Consensus pattern (139 bp):
ATATCTAATAAGATGTAAGACCATATCTAGAATATGACATTGTACGAGATATATGTGATTATCAA
GTATTCGTAATGATTCTGAATGGTTCAACGAGCATATTCAAGACGAGAATAAAAGTATGATCAGA
ATAAGCAAT
Found at i:36767338 original size:40 final size:40
Alignment explanation
Indices: 36767255--36767400 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
36767245 TCGAATGATG
* * * *
36767255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36767295 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36767335 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36767376 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36767401 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36767407 original size:80 final size:80
Alignment explanation
Indices: 36767255--36767433 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
36767245 TCGAATGATG
* * * *
36767255 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGATTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTATGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
36767320 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
36767335 TCCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTATGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
*
36767398 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
36767415 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36767434 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 60 0.72
81 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTATGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:36775476 original size:40 final size:40
Alignment explanation
Indices: 36775393--36775538 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
36775383 TCGAATGATG
* * * *
36775393 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36775433 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36775473 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36775514 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36775539 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36775545 original size:80 final size:80
Alignment explanation
Indices: 36775393--36775571 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
36775383 TCGAATGATG
* * * *
36775393 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGATTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTATGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
36775458 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
36775473 TCCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTATGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
*
36775536 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
36775553 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36775572 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 60 0.72
81 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTATGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:36777299 original size:28 final size:28
Alignment explanation
Indices: 36777242--36777303 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
36777232 TATAAATGGA
** * * *
36777242 ACTTAGTGTGTAAAGTATCGAGGATGGC
1 ACTTAGTGTGTAAAACATCCAGAATAGC
36777270 ACTTAGTGTGTAAAACATCCAGAATAGC
1 ACTTAGTGTGTAAAACATCCAGAATAGC
36777298 ACTTAG
1 ACTTAG
36777304 CGTATGAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (28 bp):
ACTTAGTGTGTAAAACATCCAGAATAGC
Found at i:36790803 original size:40 final size:40
Alignment explanation
Indices: 36790754--36790905 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
36790744 ACAACCACAA
* * *** *
36790754 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
36790794 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
36790834 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
36790874 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
36790906 CATTCAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:36796555 original size:40 final size:40
Alignment explanation
Indices: 36796506--36796657 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
36796496 ACAACCACAA
* * *** *
36796506 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
36796546 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
36796586 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
36796626 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
36796658 CATTCAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:36800578 original size:33 final size:33
Alignment explanation
Indices: 36800485--36800646 Score: 175
Period size: 33 Copynumber: 4.9 Consensus size: 33
36800475 TCTTTCTGAG
* * ***
36800485 TGGTACACACAAAGTATACCTTTTCTTTTCATA
1 TGGTATACACAAAGTATACATAACCTTTTCATA
**
36800518 TGGTATACACAAAGTATACATTTCCTTTTCATA
1 TGGTATACACAAAGTATACATAACCTTTTCATA
36800551 TGGTATACACAAAGTATACATAACCTTTTCA-A
1 TGGTATACACAAAGTATACATAACCTTTTCATA
* * * * *
36800583 -GTGTACACAAAAAGTGTACATAACTTTTTCATG
1 TG-GTATACACAAAGTATACATAACCTTTTCATA
* *
36800616 TGATATACACAAAGTATACCTAACCTTTTCA
1 TGGTATACACAAAGTATACATAACCTTTTCA
36800647 CATTCAATAG
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
31 1 0.01
32 26 0.24
33 82 0.75
34 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (33 bp):
TGGTATACACAAAGTATACATAACCTTTTCATA
Found at i:36800754 original size:31 final size:31
Alignment explanation
Indices: 36800654--36800950 Score: 349
Period size: 31 Copynumber: 9.7 Consensus size: 31
36800644 TCACATTCAA
* * *
36800654 TAGCCAAAGCTATCACTTTTCAC--ATTC-GA
1 TAGCCGAAGCTACCACTTTTCACTGA-TCAGG
36800683 TAGCCGAAGCTATCC-CTTTTCAC--ATTC-GG
1 TAGCCGAAGCTA-CCACTTTTCACTGA-TCAGG
* *
36800712 TAGCCGAAGCTATCACTATTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
* * * *
36800743 TAGCTGGAGCTACCACTTTCCACTAATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
* * *
36800774 TAGCTGAAGCTACTACTTTTCACTGATTAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
36800805 TAGCCGAAGCTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
* * *
36800836 TAGCTGAAGCTACTATTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
36800867 TAGCCGAAGC-AGCCACTTTTCACTGATCAGG
1 TAGCCGAAGCTA-CCACTTTTCACTGATCAGG
*
36800898 TAGCCGAAGCTACCACTTTTCACTAATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGG
*
36800929 TAGCCGAAGCTACCACTCTTCA
1 TAGCCGAAGCTACCACTTTTCA
36800951 TATTGTACAC
Statistics
Matches: 234, Mismatches: 27, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
28 1 0.00
29 43 0.18
30 4 0.02
31 185 0.79
32 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGG
Found at i:36802353 original size:22 final size:23
Alignment explanation
Indices: 36802323--36802368 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
36802313 TCACTCAGGC
*
36802323 TAAACTTTTAC-TGCCTATCTCTT
1 TAAACTTTTACAT-ACTATCTCTT
36802346 TAAA-TTTTACATACTATCTCTT
1 TAAACTTTTACATACTATCTCTT
36802368 T
1 T
36802369 CACTCAGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.26, C:0.22, G:0.02, T:0.50
Consensus pattern (23 bp):
TAAACTTTTACATACTATCTCTT
Found at i:36803550 original size:15 final size:15
Alignment explanation
Indices: 36803527--36803568 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
36803517 GAAGCCTAGA
36803527 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
36803542 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
36803557 ATAAGGAAATCC
1 ATAAGGAAATCC
36803569 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:36807064 original size:33 final size:33
Alignment explanation
Indices: 36807021--36807182 Score: 175
Period size: 33 Copynumber: 4.9 Consensus size: 33
36807011 TCTTTCTGAG
* **
36807021 TGGTACACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTAACCTTTTCATA
**
36807054 TGGTATACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTAACCTTTTCATA
* *
36807087 TGGTATACACAAAGTGTACATAACCTTTTCA-A
1 TGGTATACACAAAGTATACCTAACCTTTTCATA
* * * * *
36807119 -GTGTACACACAATGTGTACATAACCTTTTCATG
1 TG-GTATACACAAAGTATACCTAACCTTTTCATA
* *
36807152 TGATATACACAAAGTATACCTAACATTTTCA
1 TGGTATACACAAAGTATACCTAACCTTTTCA
36807183 CATTCGATAG
Statistics
Matches: 112, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
31 1 0.01
32 28 0.25
33 82 0.73
34 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (33 bp):
TGGTATACACAAAGTATACCTAACCTTTTCATA
Found at i:36807136 original size:32 final size:33
Alignment explanation
Indices: 36807093--36807182 Score: 119
Period size: 32 Copynumber: 2.8 Consensus size: 33
36807083 CATATGGTAT
36807093 ACACAAAGTGTACATAACCTTTTCAAGTG-TAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGATAC
* * *
36807125 ACACAATGTGTACATAACCTTTTCATGTGATAT
1 ACACAAAGTGTACATAACCTTTTCAAGTGATAC
* * *
36807158 ACACAAAGTATACCTAACATTTTCA
1 ACACAAAGTGTACATAACCTTTTCA
36807183 CATTCGATAG
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 27 0.54
33 23 0.46
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (33 bp):
ACACAAAGTGTACATAACCTTTTCAAGTGATAC
Found at i:36807219 original size:29 final size:29
Alignment explanation
Indices: 36807177--36807363 Score: 153
Period size: 31 Copynumber: 6.2 Consensus size: 29
36807167 ATACCTAACA
* *
36807177 TTTTCACATTCGATAGCCAAAGCTATCTC
1 TTTTCACATTCGATAGCCGAAGCTATCAC
*
36807206 TTTTCACATTCGATAGCCGAAGCTATCCC
1 TTTTCACATTCGATAGCCGAAGCTATCAC
36807235 TTTTCACATTCGATAGCCGAAGCTATCAC
1 TTTTCACATTCGATAGCCGAAGCTATCAC
* * * * *
36807264 TATTCAC-TGATCAGGTAGCTGGAGCTACCAC
1 TTTTCACAT--TC-GATAGCCGAAGCTATCAC
* * * *
36807295 TTTTTACTAATCAGGTAGCTGAAGCTA-CTAC
1 TTTTCAC-ATTC-GATAGCCGAAGCTATC-AC
* * *
36807326 TTTTCACTAATTAGGTAGCCGAAGCTACCAC
1 TTTTCAC--ATTCGATAGCCGAAGCTATCAC
36807357 TTTTCAC
1 TTTTCAC
36807364 TGATCAGGTA
Statistics
Matches: 133, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
28 1 0.01
29 61 0.46
30 3 0.02
31 65 0.49
32 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (29 bp):
TTTTCACATTCGATAGCCGAAGCTATCAC
Found at i:36807290 original size:31 final size:31
Alignment explanation
Indices: 36807248--36807487 Score: 318
Period size: 31 Copynumber: 7.7 Consensus size: 31
36807238 TCACATTCGA
* * *
36807248 TAGCCGAAGCTATCACTATTCACTGATCAGG
1 TAGCTGAAGCTACCACTTTTCACTGATCAGG
* * *
36807279 TAGCTGGAGCTACCACTTTTTACTAATCAGG
1 TAGCTGAAGCTACCACTTTTCACTGATCAGG
* * *
36807310 TAGCTGAAGCTACTACTTTTCACTAATTAGG
1 TAGCTGAAGCTACCACTTTTCACTGATCAGG
*
36807341 TAGCCGAAGCTACCACTTTTCACTGATCAGG
1 TAGCTGAAGCTACCACTTTTCACTGATCAGG
* * * *
36807372 TATCTGAAGCTACTATTTTTCACTGATCAAG
1 TAGCTGAAGCTACCACTTTTCACTGATCAGG
* * *
36807403 TAGCCGAAGCAACCACTTTTCATTGATCAGG
1 TAGCTGAAGCTACCACTTTTCACTGATCAGG
36807434 TAGCTGAAGCTACCACTTTTCACTGATCAGG
1 TAGCTGAAGCTACCACTTTTCACTGATCAGG
*
36807465 TAGCCGAAGCTACCACTTTTCAC
1 TAGCTGAAGCTACCACTTTTCAC
36807488 GTTGTACACA
Statistics
Matches: 179, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 179 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
TAGCTGAAGCTACCACTTTTCACTGATCAGG
Found at i:36807332 original size:62 final size:62
Alignment explanation
Indices: 36807219--36807487 Score: 341
Period size: 62 Copynumber: 4.4 Consensus size: 62
36807209 TCACATTCGA
* * *
36807219 TAGCCGAAGCTATCC-CTTTTCAC--ATTC-GATAGCCGAAGCTA-TCACTATTCACTGATCAGG
1 TAGCCGAAGCTA-CCACTTTTCACTGA-TCAGGTAGCTGAAGCTACT-ACTTTTCACTGATCAGG
* * * * * *
36807279 TAGCTGGAGCTACCACTTTTTACTAATCAGGTAGCTGAAGCTACTACTTTTCACTAATTAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACTACTTTTCACTGATCAGG
* * *
36807341 TAGCCGAAGCTACCACTTTTCACTGATCAGGTATCTGAAGCTACTATTTTTCACTGATCAAG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACTACTTTTCACTGATCAGG
* * *
36807403 TAGCCGAAGCAACCACTTTTCATTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACTACTTTTCACTGATCAGG
36807465 TAGCCGAAGCTACCACTTTTCAC
1 TAGCCGAAGCTACCACTTTTCAC
36807488 GTTGTACACA
Statistics
Matches: 179, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
59 2 0.01
60 17 0.09
61 2 0.01
62 157 0.88
63 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (62 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACTACTTTTCACTGATCAGG
Found at i:36807485 original size:93 final size:93
Alignment explanation
Indices: 36807219--36807487 Score: 328
Period size: 93 Copynumber: 2.9 Consensus size: 93
36807209 TCACATTCGA
* * * * *
36807219 TAGCCGAAGCTATCC-CTTTTCAC-ATTC-GATAGCCGAAGCTATCACTATTCACTGATCAGGTA
1 TAGCCGAAGC-AACCACTTTTCACTAATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAGGTA
* * *
36807281 GCTGGAGCTACCACTTTTTACTAATCAGG
65 GCTGAAGCTACCACTTTTCACTAATCAAG
* * * * *
36807310 TAGCTGAAGCTACTACTTTTCACTAATTAGGTAGCCGAAGCTACCACTTTTCACTGATCAGGTAT
1 TAGCCGAAGCAACCACTTTTCACTAATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAGGTAG
* * *
36807375 CTGAAGCTACTATTTTTCACTGATCAAG
66 CTGAAGCTACCACTTTTCACTAATCAAG
* * *
36807403 TAGCCGAAGCAACCACTTTTCATTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAG
1 TAGCCGAAGCAACCACTTTTCACTAATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAGGTAG
*
36807468 CCGAAGCTACCACTTTTCAC
66 CTGAAGCTACCACTTTTCAC
36807488 GTTGTACACA
Statistics
Matches: 148, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
90 1 0.01
91 17 0.11
92 2 0.01
93 128 0.86
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (93 bp):
TAGCCGAAGCAACCACTTTTCACTAATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAGGTAG
CTGAAGCTACCACTTTTCACTAATCAAG
Found at i:36813430 original size:14 final size:14
Alignment explanation
Indices: 36813411--36813441 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
36813401 AAAAACTAGA
*
36813411 AAACAAAGTAAAAT
1 AAACAAAATAAAAT
36813425 AAACAAAATAAAAT
1 AAACAAAATAAAAT
36813439 AAA
1 AAA
36813442 GTTCTAATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.13
Consensus pattern (14 bp):
AAACAAAATAAAAT
Found at i:36818117 original size:22 final size:22
Alignment explanation
Indices: 36818091--36818134 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
36818081 GAAAATAAGA
* *
36818091 AAAATTAATCAAAATTTATTAT
1 AAAATTAATAAAAATTCATTAT
36818113 AAAATTAATAAAAATTCATTAT
1 AAAATTAATAAAAATTCATTAT
36818135 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATAAAAATTCATTAT
Found at i:36821674 original size:25 final size:25
Alignment explanation
Indices: 36821640--36821705 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
36821630 CCATTTTCCT
*
36821640 AACTCATGTGAGCATTTACATTCAC
1 AACTCGTGTGAGCATTTACATTCAC
36821665 AACTCGTGTGAGCATTTACATTCAC
1 AACTCGTGTGAGCATTTACATTCAC
*
36821690 AACTCGTGTGAACATT
1 AACTCGTGTGAGCATT
36821706 ATCATCTCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (25 bp):
AACTCGTGTGAGCATTTACATTCAC
Found at i:36822945 original size:65 final size:65
Alignment explanation
Indices: 36822838--36822960 Score: 201
Period size: 65 Copynumber: 1.9 Consensus size: 65
36822828 ATTACATGTC
* *
36822838 ATCAGTTGACAACACAACCATGCCACTTGGCTCCAAACGGCCTTAACCTGTCATACAGTTGTGTG
1 ATCAGTTGACAACACAACCATGCCACTTAGCTCCAAACGGCCTCAACCTGTCATACAGTTGTGTG
* * *
36822903 ATCAGTTGACAACACGACCATGTCACTTAGCTCCAAATGGCCTCAACCTGTCATACAG
1 ATCAGTTGACAACACAACCATGCCACTTAGCTCCAAACGGCCTCAACCTGTCATACAG
36822961 CCGTGTGACC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (65 bp):
ATCAGTTGACAACACAACCATGCCACTTAGCTCCAAACGGCCTCAACCTGTCATACAGTTGTGTG
Found at i:36847471 original size:30 final size:30
Alignment explanation
Indices: 36847403--36847461 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36847393 TTAAATATTG
*
36847403 AAAATTCAATTTAATCCTTAAAATAAAATC
1 AAAATTCAATTTAATCCTCAAAATAAAATC
36847433 AAAATTCAATTTAAT-CTCAAAATTAAAAT
1 AAAATTCAATTTAATCCTCAAAA-TAAAAT
36847462 AAATTTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (30 bp):
AAAATTCAATTTAATCCTCAAAATAAAATC
Found at i:36850865 original size:2 final size:2
Alignment explanation
Indices: 36850858--36850882 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36850848 TTAACAAAAT
36850858 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
36850883 TACTACAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36853884 original size:23 final size:23
Alignment explanation
Indices: 36853858--36853912 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
36853848 AAAATCATAC
36853858 CAAAATCATGCCAAATCATAATT
1 CAAAATCATGCCAAATCATAATT
*
36853881 CAAAGTCATGCCAAATCATAATT
1 CAAAATCATGCCAAATCATAATT
*
36853904 CAAATTCAT
1 CAAAATCAT
36853913 ACCATAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.27
Consensus pattern (23 bp):
CAAAATCATGCCAAATCATAATT
Found at i:36854082 original size:30 final size:30
Alignment explanation
Indices: 36854046--36854139 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
36854036 GCCATATCAT
36854046 ATACATAACCAAGCCATATCACATGGCTAG
1 ATACATAACCAAGCCATATCACATGGCTAG
* ** *
36854076 ATACATAACCAA--AAT-TCATTCAT-AATCAC
1 ATACATAACCAAGCCATATCA--CATGGCT-AG
36854105 ATACATAACCAAGCCATATCACATGGCTAG
1 ATACATAACCAAGCCATATCACATGGCTAG
36854135 ATACA
1 ATACA
36854140 CATTACAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
27 3 0.06
28 3 0.06
29 16 0.33
30 21 0.43
31 3 0.06
32 3 0.06
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.22
Consensus pattern (30 bp):
ATACATAACCAAGCCATATCACATGGCTAG
Found at i:36854455 original size:2 final size:2
Alignment explanation
Indices: 36854448--36854478 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
36854438 CATGATTCGC
36854448 AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
36854479 CTCATTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36854754 original size:42 final size:42
Alignment explanation
Indices: 36854695--36854789 Score: 97
Period size: 42 Copynumber: 2.3 Consensus size: 42
36854685 TCCCAGACGT
* *
36854695 GGTCTTACATGTA-ATC-AATATCGATGC-CATTGTCCCAGACAA
1 GGTCTTACACG-AGATCAAATA-CGATGCTCA-TGTCCCAAACAA
* * *
36854737 GGTTTTACACGAGATCAAATACGATGCTGATGTCCCAAACAT
1 GGTCTTACACGAGATCAAATACGATGCTCATGTCCCAAACAA
36854779 GGTCTTACACG
1 GGTCTTACACG
36854790 TAAATCATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
41 1 0.02
42 38 0.86
43 5 0.11
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGAGATCAAATACGATGCTCATGTCCCAAACAA
Found at i:36855896 original size:18 final size:18
Alignment explanation
Indices: 36855873--36855907 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
36855863 GCCACTTTTA
36855873 CATTTTATGC-AATTAAGT
1 CATTTTAT-CAAATTAAGT
36855891 CATTTTATCAAATTAAG
1 CATTTTATCAAATTAAG
36855908 CACACAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 15 0.94
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (18 bp):
CATTTTATCAAATTAAGT
Found at i:36855939 original size:13 final size:13
Alignment explanation
Indices: 36855921--36855945 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36855911 ACAAACAATC
36855921 AAATTTTCACACG
1 AAATTTTCACACG
36855934 AAATTTTCACAC
1 AAATTTTCACAC
36855946 ATAGTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:36861954 original size:12 final size:12
Alignment explanation
Indices: 36861921--36861954 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
36861911 TAAATCTGAA
*
36861921 GCTAGAGCTCCG
1 GCTAGAGCTTCG
*
36861933 GCTAGAGCTTTG
1 GCTAGAGCTTCG
36861945 GCTAGAGCTT
1 GCTAGAGCTT
36861955 ATGCCATAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.32, T:0.26
Consensus pattern (12 bp):
GCTAGAGCTTCG
Found at i:36866224 original size:30 final size:30
Alignment explanation
Indices: 36866188--36866246 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
36866178 TTCGAGCCTT
*
36866188 GGGGCAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGCAAAAATGTAAATATGTAAAAGTTTA
* * *
36866218 GGGGCAAAAATGTAATTTTGTTAAAGTTT
1 GGGGCAAAAATGTAAATATGTAAAAGTTT
36866247 GAGTCTAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.32
Consensus pattern (30 bp):
GGGGCAAAAATGTAAATATGTAAAAGTTTA
Found at i:36870779 original size:28 final size:28
Alignment explanation
Indices: 36870714--36870814 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
36870704 ATAGTGAATC
*
36870714 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
36870743 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36870771 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
36870801 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36870815 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36882715 original size:40 final size:40
Alignment explanation
Indices: 36882630--36882780 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
36882620 AATTGAATGA
* * *
36882630 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
36882670 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
36882711 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
36882750 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
36882781 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:36882794 original size:40 final size:40
Alignment explanation
Indices: 36882666--36882796 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
36882656 TATGCTGGAA
* * *
36882666 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
36882706 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
36882746 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
36882786 ATTATATCCGG
1 ATTATATCCGG
36882797 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:36890172 original size:40 final size:40
Alignment explanation
Indices: 36890091--36890308 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
36890081 AAACCAAGTA
* * *
36890091 CCTTCGGGATTTAG-CCGGATATAACT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
*
36890130 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36890170 CCTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36890210 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36890250 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
36890290 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36890309 TTATCATCCG
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36894333 original size:16 final size:16
Alignment explanation
Indices: 36894308--36894341 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36894298 ATTAATTATT
*
36894308 AATTAGTAAACAAAAG
1 AATTAGTAAAAAAAAG
*
36894324 AATTATTAAAAAAAAG
1 AATTAGTAAAAAAAAG
36894340 AA
1 AA
36894342 GGTGCAGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (16 bp):
AATTAGTAAAAAAAAG
Found at i:36896425 original size:68 final size:65
Alignment explanation
Indices: 36896316--36896566 Score: 219
Period size: 68 Copynumber: 3.8 Consensus size: 65
36896306 TACAGATGGT
** * * *
36896316 ATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGACA
1 ATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAG--A
36896379 TTATG
62 -TATG
* *
36896384 ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT-
1 ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATATG
* * * * * *
36896448 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGACGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
*
36896513 AAG
63 ATG
* * *
36896516 CTG--GCTAGGTCACATGGGTGGTAC-AAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
36896567 CAAAATTATG
Statistics
Matches: 152, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
61 1 0.01
62 19 0.12
63 1 0.01
64 23 0.15
65 4 0.03
66 21 0.14
67 31 0.20
68 51 0.34
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (65 bp):
ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATATG
Found at i:36901669 original size:37 final size:37
Alignment explanation
Indices: 36901616--36901737 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
36901606 TATAAAAGAA
*
36901616 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
36901653 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
36901690 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
36901727 GTCTCACCCGG
1 GTCTTACCCGG
36901738 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:36901894 original size:49 final size:49
Alignment explanation
Indices: 36901839--36902212 Score: 559
Period size: 49 Copynumber: 7.4 Consensus size: 49
36901829 TTTTACATTA
36901839 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
36901888 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
36901937 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
36901986 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
36902035 GCCATTAGGCCTCATCACATATATTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGG------C-C-----TTATCACATATACATACACTTTCACATTCACCACATCG
* * *
36902096 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
36902145 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
36902194 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
36902213 CATATATGTA
Statistics
Matches: 303, Mismatches: 10, Indels: 24
0.90 0.03 0.07
Matches are distributed among these distances:
49 253 0.83
54 1 0.00
55 2 0.01
56 1 0.00
61 46 0.15
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:36902071 original size:61 final size:61
Alignment explanation
Indices: 36901999--36902118 Score: 240
Period size: 61 Copynumber: 2.0 Consensus size: 61
36901989 ATTAGGCCTC
36901999 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATATT
1 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATATT
36902060 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATA
1 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATA
36902119 CATCCACTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.33, C:0.32, G:0.07, T:0.28
Consensus pattern (61 bp):
ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATATT
Found at i:36902078 original size:159 final size:159
Alignment explanation
Indices: 36901899--36902217 Score: 557
Period size: 159 Copynumber: 2.0 Consensus size: 159
36901889 CCATTAGGCC
36901899 TTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATA
1 TTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATA
36901964 CACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
66 CACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
36902029 ACATCGGCCATTAGGCCTCATCACATATA
131 ACATCGGCCATTAGGCCTCATCACACATA
*
36902058 TTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATC
1 TTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATA
* * *
36902123 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATC
66 CACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
* * * *
36902188 GCATTGGCCATTCGGCCTTATCACACATA
131 ACATCGGCCATTAGGCCTCATCACACATA
36902217 T
1 T
36902218 ATGTATATCA
Statistics
Matches: 151, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
159 151 1.00
ACGTcount: A:0.30, C:0.33, G:0.08, T:0.29
Consensus pattern (159 bp):
TTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATA
CACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
ACATCGGCCATTAGGCCTCATCACACATA
Found at i:36902079 original size:110 final size:110
Alignment explanation
Indices: 36901950--36902167 Score: 409
Period size: 110 Copynumber: 2.0 Consensus size: 110
36901940 ATTAGGCCTC
36901950 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
1 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
36902015 CTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATATT
66 CTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATATT
*
36902060 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATCCA
1 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
* *
36902125 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
66 CTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATA
36902168 CATACACTTT
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 105 1.00
ACGTcount: A:0.32, C:0.33, G:0.07, T:0.28
Consensus pattern (110 bp):
ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
CTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATATT
Found at i:36905502 original size:29 final size:29
Alignment explanation
Indices: 36905466--36905600 Score: 252
Period size: 29 Copynumber: 4.7 Consensus size: 29
36905456 TGTTGAAAAA
* *
36905466 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36905495 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36905524 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36905553 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
36905582 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
36905601 AATCATTCGC
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 104 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:36905855 original size:40 final size:40
Alignment explanation
Indices: 36905798--36905882 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
36905788 CGAATACACG
* * **
36905798 TCACTAGTATGATTGCTCTTCGGGGCCTAG-CTCGGATACA
1 TCACTAGTACGAATGCTCTTCGGAACCTAGTC-CGGATACA
*
36905838 TCACTAGTACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGTACGAATGCTCTTCGGAACCTAGTCCGGATACA
36905878 TCACT
1 TCACT
36905883 CTCAATTCTC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 38 0.97
41 1 0.03
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (40 bp):
TCACTAGTACGAATGCTCTTCGGAACCTAGTCCGGATACA
Found at i:36907785 original size:36 final size:37
Alignment explanation
Indices: 36907694--36907814 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
36907684 TATAAAAGAA
*
36907694 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
36907731 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
36907768 GTCTTA-CCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
36907804 GTCTCACCCGG
1 GTCTTACCCGG
36907815 AACATATTCC
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
36 35 0.43
37 46 0.57
ACGTcount: A:0.21, C:0.33, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:36907971 original size:49 final size:49
Alignment explanation
Indices: 36907916--36908280 Score: 613
Period size: 49 Copynumber: 7.4 Consensus size: 49
36907906 TTTTACATTA
*
36907916 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
36907965 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
36908014 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
36908063 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
36908112 GCCATTAGGCCTCATCACATATCACATACACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATAT-ACAT--ACACTTTCACATTCACCACATCG
* *
36908164 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * * *
36908213 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
36908262 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
36908281 CATATATGTA
Statistics
Matches: 305, Mismatches: 8, Indels: 6
0.96 0.03 0.02
Matches are distributed among these distances:
49 252 0.83
50 4 0.01
51 4 0.01
52 45 0.15
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:36908253 original size:199 final size:196
Alignment explanation
Indices: 36907916--36908280 Score: 613
Period size: 199 Copynumber: 1.8 Consensus size: 196
36907906 TTTTACATTA
* *
36907916 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
36907981 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
36908046 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATC
131 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATC
36908111 G
196 G
36908112 GCCATTAGGCCTCATCACATATCACATACACACTTTCACATTCACCACATCGGCCATTAGGCCTC
1 GCCATTAGGCCTCATCACATAT-ACAT--ACACTTTCACATTCACCACATCGGCCATTAGGCCTC
* * *
36908177 ATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACA
63 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
* * * * *
36908242 CTTTCACATTCATCGCATTGGCCATTCGGCCTTATCACA
128 CTTTCACATTCACCACATCGGCCATTAGGCCTCATCACA
36908281 CATATATGTA
Statistics
Matches: 156, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
196 21 0.13
197 4 0.03
199 131 0.84
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.28
Consensus pattern (196 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATC
G
Found at i:36917176 original size:40 final size:40
Alignment explanation
Indices: 36917048--36917178 Score: 165
Period size: 40 Copynumber: 3.3 Consensus size: 40
36917038 TATGCTGGAA
* * *
36917048 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * **
36917088 GCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
36917128 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
36917168 ATTATATCCGG
1 ATTATATCCGG
36917179 TTATATTCCG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:36923462 original size:203 final size:203
Alignment explanation
Indices: 36923113--36923508 Score: 765
Period size: 203 Copynumber: 2.0 Consensus size: 203
36923103 GAAGGTGCAA
36923113 ATTGAATGAATAGTTAGTATGTCATGAATAACTCTTATATATATGTATATATGATGAGGTATTTT
1 ATTGAATGAATAGTTAGTATGTCATGAATAACTCTTATATATATGTATATATGATGAGGTATTTT
*
36923178 CGGTTATATAATTAATATATGCATATGAAATATTATTTCGATAATTGAGATTATGCACTTTAGTG
66 CGGTTATATAATTAATATATGCATATGAAATATTATTTCGATAATTGAGATTATGCACTTCAGTG
36923243 AATATGTATTAAATTTTAATATGACTATTTGCCTTTAGAAGTTGATTACTAACATGATAAGTGTA
131 AATATGTATTAAATTTTAATATGACTATTTGCCTTTAGAAGTTGATTACTAACATGATAAGTGTA
36923308 TTTGGCTT
196 TTTGGCTT
*
36923316 ATTGAATGAATAGTTAGTATGTCATGAATAACTCTTATATATGTGTATATATGATGAGGTATTTT
1 ATTGAATGAATAGTTAGTATGTCATGAATAACTCTTATATATATGTATATATGATGAGGTATTTT
*
36923381 CGGTTATATAATTAATATATGTATATGAAATATTATTTCGATAATTGAGATTATGCACTTCAGTG
66 CGGTTATATAATTAATATATGCATATGAAATATTATTTCGATAATTGAGATTATGCACTTCAGTG
36923446 AATATGTATTAAATTTTAATATGACTATTTGCCTTTAGAAGTTGATTACTAACATGATAAGTG
131 AATATGTATTAAATTTTAATATGACTATTTGCCTTTAGAAGTTGATTACTAACATGATAAGTG
36923509 ACTATATGAG
Statistics
Matches: 190, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
203 190 1.00
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (203 bp):
ATTGAATGAATAGTTAGTATGTCATGAATAACTCTTATATATATGTATATATGATGAGGTATTTT
CGGTTATATAATTAATATATGCATATGAAATATTATTTCGATAATTGAGATTATGCACTTCAGTG
AATATGTATTAAATTTTAATATGACTATTTGCCTTTAGAAGTTGATTACTAACATGATAAGTGTA
TTTGGCTT
Found at i:36930249 original size:48 final size:47
Alignment explanation
Indices: 36930189--36930851 Score: 897
Period size: 48 Copynumber: 13.8 Consensus size: 47
36930179 TCTATATGTG
36930189 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGCA
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATG-A
*
36930237 TGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATGA
*
36930286 -GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATG-A
* * *
36930333 TGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGGAATATATGTG
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATG-A
* * *
36930381 TGATATGTATATGTGGTAAAGCCAAATGGCGAATGTGAAATATATGTG
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATG-A
36930429 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT-A
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGA
* *
36930475 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGTATATGTG
1 T--GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATG-A
* *
36930525 TGATATGTAGATGTGGTAAAGCCGAATGGCAAATGTGAAATATGTATGA
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATGA
**
36930574 -GATATGTATATGTGGTAAAGCAAAATGGCTAATGTGAAATATAT-A
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGA
*
36930619 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 T--GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATG-A
** * *
36930669 TGATATGTAGCTGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTG
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATG-A
36930717 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT-A
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGA
* * **
36930763 TGAGATATGTATATATCGTAAAGCCGAATGGAGAATGTGAAATATCTATGA
1 T--GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATGA
*
36930814 -GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
36930852 TGTTGTAACA
Statistics
Matches: 556, Mismatches: 39, Indels: 40
0.88 0.06 0.06
Matches are distributed among these distances:
45 1 0.00
46 9 0.02
48 531 0.96
49 1 0.00
50 13 0.02
51 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (47 bp):
TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGA
Found at i:36930298 original size:96 final size:96
Alignment explanation
Indices: 36930181--36930851 Score: 1045
Period size: 96 Copynumber: 7.0 Consensus size: 96
36930171 GATAAATATC
* * **
36930181 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGCATGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
*
36930246 TATGTGGTAAAGCCGAATGGCGAATGTGAAA
66 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
36930277 TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
* *
36930342 TATGTGGTAAAGCCGAATGGCGAATGTGGAA
66 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
* * * *
36930373 TATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCGAATGTGAAATATATGTGTGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
36930438 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
66 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
36930469 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGTATATGTGTGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
* *
36930534 GATGTGGTAAAGCCGAATGGCAAATGTGAAA
66 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
* ** * *
36930565 TATGTATGAGATATGTATATGTGGTAAAGCAAAATGGCTAATGTGAAATATATATGAGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
36930630 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
66 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
* * ** *
36930661 TATATGTGTGATATGTAGCTGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
36930726 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
66 TATGTGGTAAAGCCGAATGGCTAATGTGAAA
* * ** * * * *
36930757 TATATATGAGATATGTATATATCGTAAAGCCGAATGGAGAATGTGAAATATCTATGAGATATGAA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
36930822 TATGTGGTAAAGCCGAATGGCTAATGTGAA
66 TATGTGGTAAAGCCGAATGGCTAATGTGAA
36930852 TGTTGTAACA
Statistics
Matches: 526, Mismatches: 49, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 526 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
TATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:36930361 original size:144 final size:144
Alignment explanation
Indices: 36930181--36930851 Score: 1063
Period size: 144 Copynumber: 4.7 Consensus size: 144
36930171 GATAAATATC
* * **
36930181 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGCATGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
*
36930246 TATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
66 TATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAA
36930311 TGGCTAATGTGAAA
131 TGGCTAATGTGAAA
* * * *
36930325 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGGAATATATGTGTGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
* * *
36930390 TATGTGGTAAAGCCAAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAA
66 TATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAA
36930455 TGGCTAATGTGAAA
131 TGGCTAATGTGAAA
*
36930469 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGTATATGTGTGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
* * * **
36930534 GATGTGGTAAAGCCGAATGGCAAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCAAAA
66 TATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAA
36930599 TGGCTAATGTGAAA
131 TGGCTAATGTGAAA
36930613 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
** * *
36930678 GCTGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAA
66 TATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAA
36930743 TGGCTAATGTGAAA
131 TGGCTAATGTGAAA
* * ** * * * *
36930757 TATATATGAGATATGTATATATCGTAAAGCCGAATGGAGAATGTGAAATATCTATGAGATATGAA
1 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
*
36930822 TATGTGGTAAAGCCGAATGGCTAATGTGAA
66 TATGTGGTAAAGCCGAATGGCGAATGTGAA
36930852 TGTTGTAACA
Statistics
Matches: 487, Mismatches: 40, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
144 487 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (144 bp):
TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTA
TATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAA
Found at i:36930957 original size:37 final size:37
Alignment explanation
Indices: 36930904--36931082 Score: 268
Period size: 37 Copynumber: 4.8 Consensus size: 37
36930894 ATTCCAGGTG
*
36930904 AGACCCGATGACTACGTGTGGAGATTACATCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
*
36930941 AGACCCGATGAATACGTGTGGAGATTACGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
* *
36930978 AGACCCGATGACTACGTGTGGAGATTATGTTCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
* *
36931015 AGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
* * * *
36931052 AGACCTGATAACTTCGTGTGGAGATTTCGTC
1 AGACCCGATGACTACGTGTGGAGATTACGTC
36931083 TGAGCTAAAG
Statistics
Matches: 129, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 129 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
Found at i:36941009 original size:92 final size:92
Alignment explanation
Indices: 36940852--36941037 Score: 354
Period size: 92 Copynumber: 2.0 Consensus size: 92
36940842 TTTCATATTC
36940852 TAGGCCTCTTAATAATCATAAAACAAATATTTCAATGTCGGATTTATGGTCCCGAAACCACTGTT
1 TAGGCCTCTTAATAATCATAAAACAAATATTTCAATGTCGGATTTATGGTCCCGAAACCACTGTT
*
36940917 CTAACTAGGCCCCATTTTAGGTTCGGA
66 CTAACTAGGCCCCATTTCAGGTTCGGA
*
36940944 TAGGCCTCTTAATAATCATAAAACAAATATTTCAATGTCGGATTTGTGGTCCCGAAACCACTGTT
1 TAGGCCTCTTAATAATCATAAAACAAATATTTCAATGTCGGATTTATGGTCCCGAAACCACTGTT
36941009 CTAACTAGGCCCCATTTCAGGTTCGGA
66 CTAACTAGGCCCCATTTCAGGTTCGGA
36941036 TA
1 TA
36941038 TTGGCTTCTC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (92 bp):
TAGGCCTCTTAATAATCATAAAACAAATATTTCAATGTCGGATTTATGGTCCCGAAACCACTGTT
CTAACTAGGCCCCATTTCAGGTTCGGA
Found at i:36943384 original size:40 final size:40
Alignment explanation
Indices: 36943329--36943408 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
36943319 TTCATATTCA
36943329 ATATAAAACATCAATTCTAAAATTTAGACAATTTAGTCCC
1 ATATAAAACATCAATTCTAAAATTTAGACAATTTAGTCCC
36943369 ATATAAAACATCAATTCTAAAATTTAGACAATTTAGTCCC
1 ATATAAAACATCAATTCTAAAATTTAGACAATTTAGTCCC
36943409 TACTATAACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (40 bp):
ATATAAAACATCAATTCTAAAATTTAGACAATTTAGTCCC
Found at i:36943734 original size:11 final size:10
Alignment explanation
Indices: 36943716--36943768 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 10
36943706 TTCTTTGTTC
36943716 TTTTTCTTTA
1 TTTTTCTTTA
36943726 TTGTTTCTTTA
1 TT-TTTCTTTA
*
36943737 TTCTT-TTTA
1 TTTTTCTTTA
36943746 TTATTTCTTTTA
1 TT-TTTC-TTTA
*
36943758 TTTTACTTTA
1 TTTTTCTTTA
36943768 T
1 T
36943769 ATTATTATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 6 0.17
10 11 0.31
11 13 0.36
12 6 0.17
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.75
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:36943810 original size:20 final size:18
Alignment explanation
Indices: 36943772--36943810 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
36943762 ACTTTATATT
*
36943772 ATTATATTATATTTTTTA
1 ATTATATTATATTTCTTA
36943790 ATTATAATTATTATTTCTTA
1 ATTAT-ATTA-TATTTCTTA
36943810 A
1 A
36943811 ATAATAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 9 0.50
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTATATTATATTTCTTA
Found at i:36945176 original size:26 final size:27
Alignment explanation
Indices: 36945139--36945191 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
36945129 AGCCTCAAAT
*
36945139 TGACAAAATGACTGTTATGCCCCTATG
1 TGACAAAATGACTATTATGCCCCTATG
*
36945166 TGAC-AAATGACTATTATGCCCTTATG
1 TGACAAAATGACTATTATGCCCCTATG
36945192 AGATGTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (27 bp):
TGACAAAATGACTATTATGCCCCTATG
Found at i:36945426 original size:22 final size:23
Alignment explanation
Indices: 36945401--36945443 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
36945391 TATCCCCACA
*
36945401 TGGAGTGT-AGGGCTGGATGGAG
1 TGGAGTGTAAAGGCTGGATGGAG
36945423 TGGAGTGTAAAGGCTGGATGG
1 TGGAGTGTAAAGGCTGGATGG
36945444 GTAGGATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.21, C:0.05, G:0.51, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAAAGGCTGGATGGAG
Found at i:36954902 original size:24 final size:24
Alignment explanation
Indices: 36954852--36954905 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
36954842 AATCGAATTT
*
36954852 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
36954876 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
36954900 GCACAC
1 GCACAC
36954906 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:36962693 original size:24 final size:24
Alignment explanation
Indices: 36962643--36962696 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
36962633 AATCGAATTT
*
36962643 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
36962667 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
36962691 GCACAC
1 GCACAC
36962697 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:36964544 original size:22 final size:23
Alignment explanation
Indices: 36964519--36964564 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
36964509 CAACCAAATC
36964519 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
36964541 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
36964564 A
1 A
36964565 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:36964570 original size:23 final size:23
Alignment explanation
Indices: 36964526--36964570 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
36964516 ATCAATTCAA
*
36964526 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
36964549 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
36964571 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Done.