Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 136 of 345
Found at i:36974293 original size:47 final size:47
Alignment explanation
Indices: 36974224--36974465 Score: 441
Period size: 47 Copynumber: 5.1 Consensus size: 47
36974214 TATTAAAATT
36974224 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
36974271 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
36974318 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
36974365 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
36974412 TGTGAAGGTA-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAG-AGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
36974459 TGTGAAA
1 TGTGAAA
36974466 CATATGTGTG
Statistics
Matches: 190, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 189 0.99
48 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:36974511 original size:48 final size:48
Alignment explanation
Indices: 36974457--36974656 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
36974447 CGATGTGATG
*
36974457 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
36974505 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
36974553 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
36974601 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
36974649 AATGTGAA
1 AATGTGAA
36974657 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:36974750 original size:37 final size:37
Alignment explanation
Indices: 36974696--36974786 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
36974686 AACTTGGAAA
*
36974696 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
36974734 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
36974771 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
36974787 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:36976737 original size:40 final size:40
Alignment explanation
Indices: 36976691--36977072 Score: 450
Period size: 40 Copynumber: 9.6 Consensus size: 40
36976681 TGAATGATAC
* ** *
36976691 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATGTAT
** * * * *
36976731 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* ** * * *
36976771 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
* *
36976811 CCGGACTAAGTTCCAAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
36976851 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
36976891 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
36976931 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
36976971 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
36977011 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
36977051 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
36977073 ATCATGCTGG
Statistics
Matches: 306, Mismatches: 29, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.01
40 289 0.94
41 15 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:36980764 original size:47 final size:47
Alignment explanation
Indices: 36980711--36981003 Score: 532
Period size: 47 Copynumber: 6.2 Consensus size: 47
36980701 CTTGATATTA
*
36980711 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36980758 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36980805 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
36980852 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36980899 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36980946 AATGTGAAGGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAG-A-GTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36980995 AATGTGAAA
1 AATGTGAAA
36981004 CATATGTGTG
Statistics
Matches: 238, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 194 0.82
48 1 0.00
49 43 0.18
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36981051 original size:48 final size:48
Alignment explanation
Indices: 36980995--36981194 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
36980985 CGATGTGATG
*
36980995 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
36981043 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
36981091 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
36981139 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
36981187 AATGTGAA
1 AATGTGAA
36981195 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:36984122 original size:11 final size:10
Alignment explanation
Indices: 36984104--36984161 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
36984094 TTCTCTGTTC
36984104 TTTTTCTTTA
1 TTTTTCTTTA
36984114 TTGTTTCTTTA
1 TT-TTTCTTTA
*
36984125 TTCTT-TTTA
1 TTTTTCTTTA
36984134 TTATTTCTTTTA
1 TT-TTTC-TTTA
*
36984146 TTTTACTTTA
1 TTTTTCTTTA
36984156 TATTTT
1 T-TTTT
36984162 TATATTATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 6 0.15
10 11 0.28
11 16 0.41
12 6 0.15
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.76
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:36984168 original size:32 final size:32
Alignment explanation
Indices: 36984106--36984177 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 32
36984096 CTCTGTTCTT
*
36984106 TTTC-TTTATTGTTTCTTTATTCTTTTTATTA
1 TTTCTTTTATTGTTACTTTATTCTTTTTATTA
36984137 TTTCTTTTATT-TTACTTTATAT-TTTTATATTA
1 TTTCTTTTATTGTTACTTTAT-TCTTTT-TATTA
36984169 TATT-TTTTA
1 T-TTCTTTTA
36984178 GTTATAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
31 16 0.44
32 18 0.50
33 2 0.06
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (32 bp):
TTTCTTTTATTGTTACTTTATTCTTTTTATTA
Found at i:36988351 original size:43 final size:43
Alignment explanation
Indices: 36988304--36988496 Score: 266
Period size: 43 Copynumber: 4.5 Consensus size: 43
36988294 TTTATTTGAA
* * *
36988304 AAACGCCGTTAAAGATCAAT-ATCTATAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGATC-ATGACCTTTAGCGGCGCTTTTCCTAC
36988347 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
* * *
36988390 AAACGCCGCTAAAGATCATGACCTTTAGCGACGTTTTTTCTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
* *
36988433 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTT-CTCAA
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCT-AC
36988476 AAACGCCGCTAAA-AGTCATGA
1 AAACGCCGCTAAAGA-TCATGA
36988497 AATTCAAAAA
Statistics
Matches: 136, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
42 5 0.04
43 131 0.96
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
Found at i:36993593 original size:6 final size:6
Alignment explanation
Indices: 36993575--36993619 Score: 54
Period size: 6 Copynumber: 7.0 Consensus size: 6
36993565 CTAATCTCTA
*
36993575 TTTTAT ATTTTAT TTTTAT TTTTAT ATTTCAT TTTTAT TTGTTAT
1 TTTTAT -TTTTAT TTTTAT TTTTAT -TTTTAT TTTTAT TT-TTAT
36993620 CAATATTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 19 0.56
7 15 0.44
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:36993593 original size:13 final size:13
Alignment explanation
Indices: 36993573--36993612 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
36993563 CACTAATCTC
36993573 TATTTTATATTTTA
1 TATTTTAT-TTTTA
36993587 T-TTTTATTTTTA
1 TATTTTATTTTTA
*
36993599 TATTTCATTTTTA
1 TATTTTATTTTTA
36993612 T
1 T
36993613 TTGTTATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 6 0.25
13 17 0.71
14 1 0.04
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TATTTTATTTTTA
Found at i:36993599 original size:19 final size:19
Alignment explanation
Indices: 36993575--36993619 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
36993565 CTAATCTCTA
*
36993575 TTTTATATTTTATTTTTAT
1 TTTTATATTTCATTTTTAT
36993594 TTTTATATTTCATTTTTAT
1 TTTTATATTTCATTTTTAT
36993613 TTGTTAT
1 TT-TTAT
36993620 CAATATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (19 bp):
TTTTATATTTCATTTTTAT
Found at i:36993979 original size:7 final size:7
Alignment explanation
Indices: 36993969--36994002 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
36993959 CATTAACCAT
36993969 TAACCCA
1 TAACCCA
36993976 TAACCCA
1 TAACCCA
*
36993983 TAACCCC
1 TAACCCA
*
36993990 TAACCCC
1 TAACCCA
36993997 TAACCC
1 TAACCC
36994003 TTAAATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.35, C:0.50, G:0.00, T:0.15
Consensus pattern (7 bp):
TAACCCA
Found at i:36993980 original size:21 final size:21
Alignment explanation
Indices: 36993956--36994006 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
36993946 CTAAAATATA
*
36993956 AACCATTAACCATTAACCCAT
1 AACCATTAACCACTAACCCAT
* *
36993977 AACCCA-TAACCCCTAACCCCT
1 AA-CCATTAACCACTAACCCAT
*
36993998 AACCCTTAA
1 AACCATTAA
36994007 ATTTTAAACC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 19 0.79
22 3 0.12
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCATTAACCACTAACCCAT
Found at i:36994044 original size:22 final size:20
Alignment explanation
Indices: 36994023--36994100 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
36994013 AACCCCAAAC
36994023 CCTTAAACCATAATACATAAA
1 CCTTAAACCATAAT-CATAAA
**
36994044 CCTTAAAATAGTAACTCATAAA
1 CCTTAAACCA-TAA-TCATAAA
* *
36994066 CCTTAAACCCTCAATCATATA
1 CCTTAAACCAT-AATCATAAA
* *
36994087 CCCTAAACTATAAT
1 CCTTAAACCATAAT
36994101 GATTAATTGA
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
20 3 0.07
21 23 0.51
22 18 0.40
23 1 0.02
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (20 bp):
CCTTAAACCATAATCATAAA
Found at i:36994301 original size:15 final size:15
Alignment explanation
Indices: 36994258--36994311 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
36994248 TATAAACTCT
* *
36994258 TAAT-CCTAGACCCC
1 TAATCCCTAAACCCA
36994272 TAA-CCCTTAAA-CCA
1 TAATCCC-TAAACCCA
36994286 TAATCCCTAAACCCA
1 TAATCCCTAAACCCA
*
36994301 TAATCCATAAA
1 TAATCCCTAAA
36994312 ACTTAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 14 0.42
15 19 0.58
ACGTcount: A:0.41, C:0.35, G:0.02, T:0.22
Consensus pattern (15 bp):
TAATCCCTAAACCCA
Found at i:36994308 original size:22 final size:21
Alignment explanation
Indices: 36994269--36994310 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
36994259 AATCCTAGAC
*
36994269 CCCTAACCCTTAAACCATAAT
1 CCCTAACCCATAAACCATAAT
*
36994290 CCCTAAACCCATAATCCATAA
1 CCCT-AACCCATAAACCATAA
36994311 AACTTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.21
Consensus pattern (21 bp):
CCCTAACCCATAAACCATAAT
Found at i:36994510 original size:17 final size:16
Alignment explanation
Indices: 36994479--36994519 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
36994469 CATGTGATGT
*
36994479 TTTTTGGGGTTTAGTA
1 TTTTAGGGGTTTAGTA
36994495 TTTTAGGGG-TTA-TA
1 TTTTAGGGGTTTAGTA
*
36994509 GTTTAGGGGTT
1 TTTTAGGGGTT
36994520 AAGTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 10 0.45
15 4 0.18
16 8 0.36
ACGTcount: A:0.15, C:0.00, G:0.34, T:0.51
Consensus pattern (16 bp):
TTTTAGGGGTTTAGTA
Found at i:36994515 original size:14 final size:13
Alignment explanation
Indices: 36994496--36994525 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
36994486 GGTTTAGTAT
36994496 TTTAGGGGTTATAG
1 TTTAGGGGTTA-AG
36994510 TTTAGGGGTTAAG
1 TTTAGGGGTTAAG
36994523 TTT
1 TTT
36994526 TTTTTAAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (13 bp):
TTTAGGGGTTAAG
Found at i:36994572 original size:22 final size:22
Alignment explanation
Indices: 36994527--36994574 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
36994517 GTTAAGTTTT
*
36994527 TTTTAAGGTTTAAGAGTTTAGTG
1 TTTTAAGGATTAAGAG-TTAGTG
36994550 TTTTAAGGATTATAGA-TTAGTG
1 TTTTAAGGATTA-AGAGTTAGTG
36994572 TTT
1 TTT
36994575 ATGATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 11 0.48
24 3 0.13
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (22 bp):
TTTTAAGGATTAAGAGTTAGTG
Found at i:36994679 original size:41 final size:41
Alignment explanation
Indices: 36994615--36994834 Score: 359
Period size: 41 Copynumber: 5.4 Consensus size: 41
36994605 GTTATATGAC
* * *
36994615 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCCGGA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGGT
*
36994656 TTTTAGCGGTGTTTTACCAAAAGCGCCGCTAATGCTCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGGT
*
36994697 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGGT
* *
36994738 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCCCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGGT
* *
36994779 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCCGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGGT
36994820 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
36994835 TGGTAAAACA
Statistics
Matches: 170, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 170 1.00
ACGTcount: A:0.18, C:0.26, G:0.25, T:0.31
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGGT
Found at i:36994843 original size:41 final size:41
Alignment explanation
Indices: 36994615--36994896 Score: 306
Period size: 41 Copynumber: 6.9 Consensus size: 41
36994605 GTTATATGAC
* * * *
36994615 TTTTAGCGGCG-TTTTATCGAAAGCGCCGCTAATGCTCCGGA
1 TTTTAGCGGCGTTTTTA-CCAAAACGCCGCTATTGCTCCGGT
* *
36994656 TTTTAGCGGTG-TTTTACCAAAAGCGCCGCTAATGCTCCGGT
1 TTTTAGCGGCGTTTTTACCAAAA-CGCCGCTATTGCTCCGGT
* *
36994697 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCCCCGGT
1 TTTTAGCGGCGTTTTTACCAAAA-CGCCGCTATTGCTCCGGT
*
36994738 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTATTGCCCCGGT
1 TTTTAGCGGCGTTTTTACCAAAA-CGCCGCTATTGCTCCGGT
36994779 TTTTAGCGGCG-TTTTACCAAAAACGCCGCTATTGCTCCGGT
1 TTTTAGCGGCGTTTTTACC-AAAACGCCGCTATTGCTCCGGT
*** * * *
36994820 TTTTAGCGGCGTTTTTGGTAAAACACCACTATTGCT-CTGT
1 TTTTAGCGGCGTTTTTACCAAAACGCCGCTATTGCTCCGGT
*** *
36994860 TTTTAGCGGCGTTTTTGGTAAAACGCCACTATTGCTC
1 TTTTAGCGGCGTTTTTACCAAAACGCCGCTATTGCTC
36994897 TATGTTTTAT
Statistics
Matches: 222, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
40 42 0.19
41 172 0.77
42 8 0.04
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.32
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTACCAAAACGCCGCTATTGCTCCGGT
Found at i:36994944 original size:12 final size:12
Alignment explanation
Indices: 36994929--36994954 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36994919 GTTTTTTGGT
36994929 AAAACGCCGCTA
1 AAAACGCCGCTA
36994941 AAAACGCCGCTA
1 AAAACGCCGCTA
36994953 AA
1 AA
36994955 GCCATGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:36996675 original size:49 final size:49
Alignment explanation
Indices: 36996206--36996667 Score: 761
Period size: 49 Copynumber: 9.5 Consensus size: 49
36996196 GTATGAGATG
* *
36996206 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
* *
36996255 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
* *
36996304 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
36996353 TATATATGTGATAAGGCCTAATGGCCGA----ATGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
* * *
36996398 TATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
* *
36996447 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
36996496 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
*
36996545 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
*
36996594 TATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
* *
36996643 TATATATGTGATAAAGCCGAATGGC
1 TATATATGTGATAAGGCCTAATGGC
36996668 TAATGTGAAT
Statistics
Matches: 392, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
45 45 0.11
49 347 0.89
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
Found at i:36996771 original size:37 final size:36
Alignment explanation
Indices: 36996716--36996802 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
36996706 AACTTGGAAA
36996716 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
36996754 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
36996791 TATGTCCGGGTA
1 TATGTCCGGGTA
36996803 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:37007640 original size:29 final size:28
Alignment explanation
Indices: 37007608--37007710 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
37007598 GTGACGAGAT
* *
37007608 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
37007637 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
37007666 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
37007695 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37007711 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:37015439 original size:29 final size:28
Alignment explanation
Indices: 37015407--37015509 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
37015397 GTGACGAGAT
* *
37015407 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
37015436 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
37015465 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
37015494 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37015510 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:37018045 original size:23 final size:23
Alignment explanation
Indices: 37018003--37018172 Score: 116
Period size: 23 Copynumber: 7.3 Consensus size: 23
37017993 AACCTCGTCC
37018003 TGAGCTGATGAACAGTAAGCTCTAA
1 TGAGCTGA--AACAGTAAGCTCTAA
* *
37018028 TGAGATGAAACGGTAAGCTCT-A
1 TGAGCTGAAACAGTAAGCTCTAA
* **
37018050 TCGAGTTGAAATGGTAAGCTCT-A
1 T-GAGCTGAAACAGTAAGCTCTAA
* *
37018073 TCGAGCTG-AACAGTAAGCTTTAT
1 T-GAGCTGAAACAGTAAGCTCTAA
* *
37018096 TGAGTTG-AACAATAAGCTC-ATA
1 TGAGCTGAAACAGTAAGCTCTA-A
* * *
37018118 CGAGCTGAAACGGTAAGCTCCAA
1 TGAGCTGAAACAGTAAGCTCTAA
* *
37018141 TGAGCTGAATACAGTAAGATCTTA
1 TGAGCTGAA-ACAGTAAGCTCTAA
*
37018165 TAAGCTGA
1 TGAGCTGA
37018173 TATATTAATA
Statistics
Matches: 116, Mismatches: 23, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.01
22 32 0.28
23 58 0.50
24 18 0.16
25 7 0.06
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAA
Found at i:37018134 original size:45 final size:44
Alignment explanation
Indices: 37018011--37018137 Score: 141
Period size: 45 Copynumber: 2.8 Consensus size: 44
37018001 CCTGAGCTGA
* *
37018011 TGAACAGTAAGCTCTAATGAGATGAAACGGTAAGCTCTATCGAGT
1 TGAACAGTAAGCTCT-ACGAGCTGAAACGGTAAGCTCTATCGAGT
* * *
37018056 TGAA-ATGGTAAGCTCTATCGAGCTG-AACAGTAAGCTTTATTGAGT
1 TGAACA--GTAAGCTCTA-CGAGCTGAAACGGTAAGCTCTATCGAGT
*
37018101 TGAACAATAAGCTCATACGAGCTGAAACGGTAAGCTC
1 TGAACAGTAAGCTC-TACGAGCTGAAACGGTAAGCTC
37018138 CAATGAGCTG
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
44 15 0.22
45 38 0.56
46 15 0.22
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25
Consensus pattern (44 bp):
TGAACAGTAAGCTCTACGAGCTGAAACGGTAAGCTCTATCGAGT
Found at i:37025359 original size:50 final size:49
Alignment explanation
Indices: 37025241--37025370 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
37025231 CTGGTACGCA
* * * **
37025241 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
37025290 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
37025340 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
37025371 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 29 0.40
50 41 0.56
51 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:37027812 original size:34 final size:34
Alignment explanation
Indices: 37027767--37027837 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
37027757 ATTTATCCTA
* *
37027767 AATATGTTATGAAAGCTTTTCAAGAGAACAAGGC
1 AATATGATATGAAAGCTTTTCAAGAAAACAAGGC
*
37027801 AATATGATATGAAAGCTTTTCAAGAAAATAAGGC
1 AATATGATATGAAAGCTTTTCAAGAAAACAAGGC
37027835 AAT
1 AAT
37027838 CATTTAGGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (34 bp):
AATATGATATGAAAGCTTTTCAAGAAAACAAGGC
Found at i:37043508 original size:9 final size:9
Alignment explanation
Indices: 37043494--37043518 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37043484 TGCAAACCAT
37043494 CAAACTGAA
1 CAAACTGAA
37043503 CAAACTGAA
1 CAAACTGAA
37043512 CAAACTG
1 CAAACTG
37043519 TTATATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.24, G:0.12, T:0.12
Consensus pattern (9 bp):
CAAACTGAA
Found at i:37047216 original size:13 final size:14
Alignment explanation
Indices: 37047198--37047229 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
37047188 GGTTACGAAA
37047198 AAAATAACT-AAAT
1 AAAATAACTAAAAT
37047211 AAAATAACTAAAAT
1 AAAATAACTAAAAT
37047225 AAAAT
1 AAAAT
37047230 GAGATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAATAACTAAAAT
Found at i:37057151 original size:46 final size:45
Alignment explanation
Indices: 37057084--37057258 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
37057074 TGTAACCCGC
*
37057084 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
37057130 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
37057176 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
37057223 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
37057259 ATGCCCAAAC
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 67 0.61
47 32 0.29
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:37057204 original size:93 final size:93
Alignment explanation
Indices: 37057092--37057263 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
37057082 GCCCATAAGT
*
37057092 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37057156 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
37057185 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37057250 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
37057264 CAAACATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:37057278 original size:46 final size:46
Alignment explanation
Indices: 37057089--37057278 Score: 160
Period size: 46 Copynumber: 4.1 Consensus size: 46
37057079 CCCGCCCATA
* * * *
37057089 AGTGAACTCGGACTCAACTCAACGAGCTC--AGGCGT-TCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAT-ACATCC-T
*
37057134 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * *
37057184 --CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
37057227 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
37057274 AGTGA
1 AGTGA
37057279 CATGTCACTT
Statistics
Matches: 118, Mismatches: 14, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.05
45 2 0.02
46 63 0.53
47 29 0.25
48 10 0.08
50 5 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:37059670 original size:15 final size:15
Alignment explanation
Indices: 37059641--37059690 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
37059631 CAAAGATAAC
*
37059641 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37059655 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37059670 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37059685 AAGAAA
1 AAGAAA
37059691 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37059699 original size:15 final size:15
Alignment explanation
Indices: 37059652--37059699 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
37059642 AGAAAACCGA
37059652 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
37059666 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37059682 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37059697 ATA
1 ATA
37059700 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37062769 original size:93 final size:93
Alignment explanation
Indices: 37062637--37062808 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
37062627 GCCCATAAGT
* * *
37062637 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
37062702 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* **
37062730 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
37062795 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
37062809 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:37062804 original size:46 final size:46
Alignment explanation
Indices: 37062629--37062804 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
37062619 TGTAACCCGC
* * * *
37062629 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
*
37062675 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTACAT
* * *
37062725 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
*
37062768 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
37062805 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.58
47 28 0.25
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
Found at i:37066215 original size:38 final size:35
Alignment explanation
Indices: 37066123--37066196 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
37066113 AAATTGTGAT
37066123 AAATTGTATGTCTGAGTTATCTTGACAACAAGAAG
1 AAATTGTATGTCTGAGTTATCTTGACAACAAGAAG
37066158 AAATTGTATGTCTGAGTTATCTTGACAACAAGAAG
1 AAATTGTATGTCTGAGTTATCTTGACAACAAGAAG
37066193 AAAT
1 AAAT
37066197 GTTTTTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (35 bp):
AAATTGTATGTCTGAGTTATCTTGACAACAAGAAG
Found at i:37071003 original size:21 final size:20
Alignment explanation
Indices: 37070973--37071012 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
37070963 GCAACCCAAC
*
37070973 CCCATCCATCCATCACACCT
1 CCCATCCATCCAACACACCT
37070993 CCCATACCATCCAACACACC
1 CCCAT-CCATCCAACACACC
37071013 CTATGGGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.30, C:0.55, G:0.00, T:0.15
Consensus pattern (20 bp):
CCCATCCATCCAACACACCT
Found at i:37073060 original size:13 final size:13
Alignment explanation
Indices: 37073042--37073070 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37073032 AAACATGCAA
37073042 AAAGAGTTAAACC
1 AAAGAGTTAAACC
37073055 AAAGAGTTAAACC
1 AAAGAGTTAAACC
37073068 AAA
1 AAA
37073071 CAAACTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGAGTTAAACC
Found at i:37078001 original size:40 final size:40
Alignment explanation
Indices: 37077865--37078082 Score: 260
Period size: 40 Copynumber: 5.5 Consensus size: 40
37077855 CGAATGGTAT
* * * *
37077865 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
37077906 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
37077946 -CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
37077985 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
37078025 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
37078065 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
37078083 ACAATCGAGC
Statistics
Matches: 156, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 36 0.23
40 96 0.62
41 24 0.15
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:37078095 original size:120 final size:120
Alignment explanation
Indices: 37077865--37078096 Score: 297
Period size: 120 Copynumber: 1.9 Consensus size: 120
37077855 CGAATGGTAT
* *
37077865 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * * * * * *
37077930 GTGCGAGTTACCAAAACGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACGGGCTAAGTCCCGAAGACAATCGAGCGAGTTACCAAAA
* * *
37077985 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
37078048 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGT
65 TGTGCGAATCACCA-AAACGGGCTAAGTCCCGAAGACAATCGAGCGAGT
37078097 CGCTATATCC
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
118 1 0.01
119 41 0.43
120 53 0.56
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACGGGCTAAGTCCCGAAGACAATCGAGCGAGTTACCAAAA
Found at i:37078103 original size:40 final size:40
Alignment explanation
Indices: 37078025--37078108 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
37078015 GTTACTAAAT
* * *
37078025 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
37078065 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
37078105 CCGG
1 CCGG
37078109 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:37078107 original size:80 final size:80
Alignment explanation
Indices: 37077863--37078108 Score: 190
Period size: 80 Copynumber: 3.1 Consensus size: 80
37077853 TTCGAATGGT
** * * * * * *
37077863 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGG-TCAATTCCCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TCACCAAAACCGGGCT-AAGTCCCGAAGACA
* * * * *
37077927 TTTGTGCGAGTTACCAA
64 ATCGAGCGAGTCACTAA
* * * * * * * *
37077944 A-ACGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAAT
* * *
37078008 TGTGCGAGTTACTAA
66 CGAGCGAGTCACTAA
* * * *
37078023 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAAT
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAAT
* *
37078088 CGAGCGAGTCGCTAT
66 CGAGCGAGTCACTAA
37078103 ATCCGG
1 ATCCGG
37078109 TTAAATTCCG
Statistics
Matches: 136, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
79 41 0.30
80 94 0.69
81 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAAT
CGAGCGAGTCACTAA
Found at i:37086132 original size:39 final size:40
Alignment explanation
Indices: 37085966--37086157 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
37085956 TTCGAATGGT
* * * * *
37085966 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAA
* *
37086007 ATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
*
37086047 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* *
37086087 AACCGGGTTAAGTCCCGAAGGCATTTGT-CGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* * *
37086126 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
37086158 ATCACTATAA
Statistics
Matches: 135, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 34 0.25
40 75 0.56
41 26 0.19
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:37086146 original size:79 final size:80
Alignment explanation
Indices: 37085966--37086157 Score: 260
Period size: 79 Copynumber: 2.4 Consensus size: 80
37085956 TTCGAATGGT
* * * * *
37085966 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGCAT
37086031 TTGTGCGAGTTACCAA
65 TTGTGCGAGTTACCAA
* * * *
37086047 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATT
*
37086112 TGT-CGAGTTACTAA
66 TGTGCGAGTTACCAA
* *
37086126 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
37086158 ATCACTATAA
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
79 38 0.39
80 32 0.33
81 27 0.28
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATT
TGTGCGAGTTACCAA
Found at i:37086183 original size:39 final size:40
Alignment explanation
Indices: 37085968--37086184 Score: 242
Period size: 40 Copynumber: 5.5 Consensus size: 40
37085958 CGAATGGTAT
* * * * *
37085968 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
*
37086009 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
37086049 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
37086089 CCGGGTTAAGTCCCGAAGGCATTTGT-CGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * *
37086128 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
37086168 CCGGGCTATGT-CCGAAG
1 CCGGGCTAAGTCCCGAAG
37086185 ACAATCGAGC
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 40 0.26
40 90 0.58
41 25 0.16
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:37086198 original size:79 final size:79
Alignment explanation
Indices: 37085968--37086198 Score: 187
Period size: 79 Copynumber: 2.9 Consensus size: 79
37085958 CGAATGGTAT
** * * * * * * *
37085968 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGG-TCAATTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TCACCAAAACCGGGCT-AAGTCCCGAAGACAAT
*
37086032 TGTGCGAGTTACCAAAA
64 CG-GCGAGTTACCAAAA
* * * * * * * *
37086049 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCG
* * *
37086114 TCGAGTTACTAAAT
66 GCGAGTTACCAAAA
* * * *
37086128 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGT-CCGAAGACAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCG
37086192 AGCGAGT
66 -GCGAGT
37086199 CGCTATATCC
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
78 10 0.08
79 58 0.47
80 28 0.23
81 28 0.23
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCG
GCGAGTTACCAAAA
Found at i:37095034 original size:46 final size:45
Alignment explanation
Indices: 37094830--37095141 Score: 204
Period size: 47 Copynumber: 6.6 Consensus size: 45
37094820 GGTATAATGT
* * * * *
37094830 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCA-CGTTAAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTCTCATC-TGAGGC
* * * * *
37094877 CGATGCCATGTCCCATATATGGTCTAACACTGACCCTCA-CGTGTCCGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTCTCATC-TG--AG-GC
* * *
37094927 CAATGCCATGTCCCAGACATGGTCTTACACTGACACATCATGT-A-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTC-TCATCTGAGGC
* *
37094973 CGATGCATGTTCCAGACATGTCTTACACTGGCT-TCCATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGACTCT-CATCT-GAGGC
* * * * *
37095019 CGATGAATGTCCCAGACATGTCTTACACT-AGCTCTCGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGA-CTCTCATCT-GAGGC
* * *
37095065 CGATGCCATGTCCAAGACATGGTCTTACACTGACTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTCTCAT-CTGAGGC
37095113 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
37095142 AGCACACATA
Statistics
Matches: 212, Mismatches: 38, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
42 1 0.00
43 4 0.02
44 12 0.06
45 14 0.07
46 59 0.28
47 62 0.29
48 22 0.10
49 2 0.01
50 32 0.15
51 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTCTCATCTGAGGC
Found at i:37095093 original size:94 final size:92
Alignment explanation
Indices: 37094973--37095144 Score: 242
Period size: 94 Copynumber: 1.8 Consensus size: 92
37094963 ATCATGTAGC
* *
37094973 CGATGCATGTTCCAGACATGTCTTACACTGGCT-TCCAT-CTCGAGGCCGATGAATGTCCCAGAC
1 CGATGCATGTTCCAGACATGTCTTACACTGACTCT-CATAAT-GAGGCCGATGAATGTCCCAGAC
37095036 ATGTCTTACACTAGCTCTCGTCTCAATGT
64 ATGTCTTACACTAGCTCTCGTCTCAATGT
* *
37095065 CGATGCCATG-TCCAAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCATGTCCCAGA
1 CGATG-CATGTTCC-AGACAT-GTCTTACACTGACTCTCATAATGAGGCCGATGAATGTCCCAGA
37095129 CATGTCTTACACTAGC
63 CATGTCTTACACTAGC
37095145 ACACATATCA
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
92 8 0.11
93 10 0.14
94 51 0.72
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
CGATGCATGTTCCAGACATGTCTTACACTGACTCTCATAATGAGGCCGATGAATGTCCCAGACAT
GTCTTACACTAGCTCTCGTCTCAATGT
Found at i:37101585 original size:28 final size:28
Alignment explanation
Indices: 37101532--37101587 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
37101522 ACAAGGGTTT
**
37101532 TCACACGGCCTGACACACGCTTGTGTCCC
1 TCACACGGCCTGA-ACACGCCCGTGTCCC
37101561 TCACACGGCCATG-ACACGCCCGTGTCC
1 TCACACGGCC-TGAACACGCCCGTGTCC
37101588 TACCCAGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 12 0.50
29 10 0.42
30 2 0.08
ACGTcount: A:0.18, C:0.43, G:0.21, T:0.18
Consensus pattern (28 bp):
TCACACGGCCTGAACACGCCCGTGTCCC
Found at i:37102867 original size:46 final size:44
Alignment explanation
Indices: 37102769--37102883 Score: 153
Period size: 46 Copynumber: 2.5 Consensus size: 44
37102759 AAGTTCATGC
37102769 CATGTCCCAGACATGGTCTTACACTGACACATCATGTAGCTAATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCATGTAGCTAATG
* *
37102814 CATGTCCCAGACATGTCTTACACTGGCTTACA-CCTCG-AGGCTAATG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCAT-GTA-GCTAATG
37102860 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
37102884 AGTTCTCGTC
Statistics
Matches: 64, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
44 12 0.19
45 17 0.27
46 35 0.55
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCATGTAGCTAATG
Found at i:37107187 original size:30 final size:31
Alignment explanation
Indices: 37107117--37107199 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
37107107 TCAATCTCAA
37107117 CATAT-ACTGGGCCGAAGCCTTTGCATTACT
1 CATATCACTGGGCCGAAGCCTTTGCATTACT
* *
37107147 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTACT
*
37107177 CATATCACTGGGCCAAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
37107200 ACTGTAAATG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 26 0.54
31 22 0.46
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTACT
Found at i:37107448 original size:25 final size:24
Alignment explanation
Indices: 37107420--37107490 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 24
37107410 CTCTTTTAAT
*
37107420 AACTGGGGTAAATCCCTTTTGGATA
1 AACTGGGGTAAAGCCCTTTTGG-TA
*
37107445 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGTAAAGCCCTTTT-GGTA
37107470 AACT-GGGTAAAAGCCCTTTTG
1 AACTGGGGT-AAAGCCCTTTTG
37107491 CATTTCCTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 4 0.10
25 35 0.85
26 2 0.05
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (24 bp):
AACTGGGGTAAAGCCCTTTTGGTA
Found at i:37107568 original size:11 final size:11
Alignment explanation
Indices: 37107537--37107573 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37107527 AAATGAATAC
*
37107537 ATCATGTGCAT
1 ATCATGAGCAT
37107548 ATCAT-A-CAT
1 ATCATGAGCAT
37107557 ATCATGAGCAT
1 ATCATGAGCAT
37107568 ATCATG
1 ATCATG
37107574 TACAATCATG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
9 8 0.35
10 1 0.04
11 14 0.61
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (11 bp):
ATCATGAGCAT
Found at i:37119203 original size:93 final size:93
Alignment explanation
Indices: 37119044--37119230 Score: 311
Period size: 93 Copynumber: 2.0 Consensus size: 93
37119034 AGGAGACTTG
* * * * *
37119044 AAATTGAGGCACAATAGTTCGAGCTAAAGCCAGTCATGTTCCAGATGTTTCAGATAGTGGTCCAA
1 AAATTGAGGCACAACAGTTCGAGCTAAAGCCAGTCAAGTTCCAAATGCTTCAGATAGTGGGCCAA
37119109 TTCAGTAGAATGCCTACTGAAGATCCTC
66 TTCAGTAGAATGCCTACTGAAGATCCTC
*
37119137 AAATTGAGGCACAACAGTTCGAGCTGAAGCCAGTCAAGTTCCAAATGCTTCAGATAGTGGGCCAA
1 AAATTGAGGCACAACAGTTCGAGCTAAAGCCAGTCAAGTTCCAAATGCTTCAGATAGTGGGCCAA
*
37119202 TTCAGTAGACTGCCTACTGAAGATCCTC
66 TTCAGTAGAATGCCTACTGAAGATCCTC
37119230 A
1 A
37119231 CCTATACTTA
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 87 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (93 bp):
AAATTGAGGCACAACAGTTCGAGCTAAAGCCAGTCAAGTTCCAAATGCTTCAGATAGTGGGCCAA
TTCAGTAGAATGCCTACTGAAGATCCTC
Found at i:37121604 original size:40 final size:39
Alignment explanation
Indices: 37121555--37121762 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 39
37121545 TCTTCGGAAT
* * *
37121555 TTAG-CCGGATATAACCACAAGCACAATTACCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** * *
37121594 TTAACCCGGATTTGGTAACTTGAACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
37121634 TTAGCCCGAATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
37121674 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
37121714 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
37121754 TTAGCCCGG
1 TTAGCCCGG
37121763 GTATCATTCA
Statistics
Matches: 142, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:37128080 original size:24 final size:24
Alignment explanation
Indices: 37128048--37128254 Score: 369
Period size: 24 Copynumber: 8.6 Consensus size: 24
37128038 AGTGCTATAG
* *
37128048 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
37128072 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37128096 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37128120 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37128144 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
37128168 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
37128192 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
37128216 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37128240 TCGCACACATAGTGC
1 TCGCACACATAGTGC
37128255 ATTTGAGATA
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 179 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:37128709 original size:2 final size:2
Alignment explanation
Indices: 37128702--37128731 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37128692 ATGGGCATAC
37128702 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37128732 CATACCCGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:37135770 original size:24 final size:24
Alignment explanation
Indices: 37135745--37135977 Score: 405
Period size: 24 Copynumber: 9.8 Consensus size: 24
37135735 CGAATGTGGC
* *
37135745 AAATCGCACACATAGTGCTATAGC
1 AAATCGCACACATAGTGCCATAGT
37135769 AAATCGCACACATAGTG-CATAGT
1 AAATCGCACACATAGTGCCATAGT
37135792 AAATCGCACACATAGTGCCATAGT
1 AAATCGCACACATAGTGCCATAGT
37135816 AAATCGCACACATAGTGCCATAGT
1 AAATCGCACACATAGTGCCATAGT
37135840 AAATCGCACACATAGTGCCATAGT
1 AAATCGCACACATAGTGCCATAGT
*
37135864 GAATCGCACACATAGTGCCATAGT
1 AAATCGCACACATAGTGCCATAGT
*
37135888 GAATCGCACACATAGTGCCATAGT
1 AAATCGCACACATAGTGCCATAGT
*
37135912 GAATCGCACACATAGTGCCATAGT
1 AAATCGCACACATAGTGCCATAGT
*
37135936 GAATCGCACACATAGTGCCATAGT
1 AAATCGCACACATAGTGCCATAGT
37135960 AAATCGCACACATAGTGC
1 AAATCGCACACATAGTGC
37135978 ATTTGAGATA
Statistics
Matches: 204, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
23 21 0.10
24 183 0.90
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
AAATCGCACACATAGTGCCATAGT
Found at i:37140456 original size:39 final size:38
Alignment explanation
Indices: 37140387--37140495 Score: 112
Period size: 39 Copynumber: 2.8 Consensus size: 38
37140377 GTTATAATAG
* *
37140387 CTCGCACAAATG-CTTCGGGACTTAACCCGGATTTGGGAA
1 CTCGCAC-AATGCCTTC-GGACTTAGCCCGGATATGGGAA
* **
37140426 CTCGCACAATGCCTTCGGATCTTAGTCCGGATATGGTCA
1 CTCGCACAATGCCTTCGGA-CTTAGCCCGGATATGGGAA
* *
37140465 CTTAGCACAAAGCCTTCGGACTTAGCCCGGA
1 C-TCGCACAATGCCTTCGGACTTAGCCCGGA
37140496 CATCATTCGA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
38 7 0.12
39 36 0.61
40 16 0.27
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (38 bp):
CTCGCACAATGCCTTCGGACTTAGCCCGGATATGGGAA
Found at i:37153851 original size:23 final size:22
Alignment explanation
Indices: 37153815--37153859 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
37153805 TAATTCATCC
*
37153815 AAAAATATGCTAAGTATG-GGTT
1 AAAAATATGATAAG-ATGCGGTT
37153837 AAAAATATGTATAAGATGCGGTT
1 AAAAATATG-ATAAGATGCGGTT
37153860 TATCATTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.31
Consensus pattern (22 bp):
AAAAATATGATAAGATGCGGTT
Found at i:37163154 original size:43 final size:42
Alignment explanation
Indices: 37163100--37163244 Score: 123
Period size: 43 Copynumber: 3.4 Consensus size: 42
37163090 ACCGAGATGA
**
37163100 GATTACATGTAAGACCATGTCTAGGACATTGGCAT-TGTATTGT
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATAT-TA-TAC
** * * * *
37163143 GATTATGTGTAATATCATGTATGGGACATTGGCATCATTATAC
1 GATTACATGTAAGACCATGTCTAGGACATTGGCAT-ATTATAC
* * *
37163186 GATTACATGTAAGACCATATCTAAGACATTGGCATCGTTA-ATC
1 GATTACATGTAAGACCATGTCTAGGACATTGGCAT-ATTATA-C
*
37163229 GATTTCATGTAAGACC
1 GATTACATGTAAGACC
37163245 CTCTCCGGGA
Statistics
Matches: 81, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 1 0.01
43 77 0.95
44 2 0.02
45 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTAGGACATTGGCATATTATAC
Found at i:37181596 original size:25 final size:25
Alignment explanation
Indices: 37181562--37181610 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
37181552 CCCGTGTGCC
37181562 AGGCAGTGTCCCTCACACGGCTGAT
1 AGGCAGTGTCCCTCACACGGCTGAT
37181587 AGGCAGTGTCCCTCACACGGCTGA
1 AGGCAGTGTCCCTCACACGGCTGA
37181611 GACACACGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (25 bp):
AGGCAGTGTCCCTCACACGGCTGAT
Found at i:37182609 original size:46 final size:43
Alignment explanation
Indices: 37182515--37182729 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 43
37182505 ATATCTATGT
* * *
37182515 CGATGCCATGTCCCAGACAGGGTCTTACACTGACACATCTCGTA-GC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTGGCA-TTCTCG-AGGC
37182561 CGATGCATGTCCCAGACATGTCTTACACTGGCTTATTTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC--A-TTCTCGAGGC
* * * *
37182607 CGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAACGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCA-T--TCTCGAGGC
* * * *
37182653 TGATGCCATGTCCAAGACATGGTCTTACACTGGC-TCTCATAAGGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCAT-TC-T--CGAGGC
37182701 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
37182730 AGCTCACAAT
Statistics
Matches: 140, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
44 14 0.10
45 16 0.11
46 66 0.47
47 26 0.19
48 18 0.13
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (43 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCATTCTCGAGGC
Found at i:37182678 original size:94 final size:92
Alignment explanation
Indices: 37182515--37182732 Score: 239
Period size: 94 Copynumber: 2.3 Consensus size: 92
37182505 ATATCTATGT
* * * * * *
37182515 CGATGCCATGTCCCAGACAGGGTCTTACACT-G-ACACATCTCGTA-GCCGATGCATGTCCCAGA
1 CGATG-CATGTCCCAGACA-TGTCTTACACTAGCACTCGTCTC-AACGCTGATGCATGTCCAAGA
**
37182577 CATGTCTTACACTGGCT-T-ATTTCTCGAGGC
63 CATGTCTTACACTGGCTCTCA--TAACGAGGC
*
37182607 CGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAACGCTGATGCCATGTCCAAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAACGCTGATG-CATGTCCAAGACA
* *
37182672 TGGTCTTACACTGGCTCTCATAAGGTGGC
65 T-GTCTTACACTGGCTCTCATAACGAGGC
37182701 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
37182733 TCACAATGGC
Statistics
Matches: 107, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
90 10 0.09
91 14 0.13
92 18 0.17
93 13 0.12
94 50 0.47
95 1 0.01
96 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAACGCTGATGCATGTCCAAGACAT
GTCTTACACTGGCTCTCATAACGAGGC
Found at i:37184608 original size:68 final size:67
Alignment explanation
Indices: 37184536--37184685 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
37184526 CATCATGTGT
** * * *
37184536 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGA-TACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCATGATTACAAGTGAAGGACACC
37184598 ATGTAG
62 ATGTAG
** *
37184604 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCATGATTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCATGATTACAAGTGAAGGACACCATGT
37184669 AG
66 AG
37184671 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
37184686 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 21 0.30
65 6 0.09
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCATGATTACAAGTGAAGGACACCATGT
AG
Found at i:37184641 original size:64 final size:64
Alignment explanation
Indices: 37184560--37184743 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
37184550 AGACATTATG
* *
37184560 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * *
37184624 ATGTAGCTAGGTCGCATGCATGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGA-TACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37184689 AA
63 AA
* * * * *
37184691 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCATCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
37184744 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 22 0.23
65 6 0.06
66 16 0.17
67 31 0.32
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37193825 original size:46 final size:45
Alignment explanation
Indices: 37193756--37193912 Score: 129
Period size: 46 Copynumber: 3.4 Consensus size: 45
37193746 ATGTCCCAAG
* * *
37193756 CATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGA
1 CATGTCTTACACTAGCCT-CGTCTCGAGGTCGATGCATGTCCTAGA
* * * *
37193802 CATGTCTTACACTAGCACTCGTCTCAATGTTGATGCCATGTCCAAGA
1 CATGTCTTACACTAGC-CTCGTCTCGAGGTCGATG-CATGTCCTAGA
* * * *
37193849 CATGGCCTTAAACT-GCCTC-TCATAAGGTGGTCGATGCATGTCCTAGA
1 CAT-GTCTTACACTAGCCTCGTC-T--CGAGGTCGATGCATGTCCTAGA
*
37193896 CATGTCTTACAGTAGCC
1 CATGTCTTACACTAGCC
37193913 CACAATAGCC
Statistics
Matches: 86, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.02
46 38 0.44
47 32 0.37
48 14 0.16
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (45 bp):
CATGTCTTACACTAGCCTCGTCTCGAGGTCGATGCATGTCCTAGA
Found at i:37202129 original size:31 final size:29
Alignment explanation
Indices: 37202043--37202174 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
37202033 GTGACGAGAT
37202043 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
37202072 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** * *
37202101 TGGCACTAAAAGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
37202130 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
37202159 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
37202175 GGCTTAAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:37205472 original size:40 final size:42
Alignment explanation
Indices: 37205428--37205509 Score: 114
Period size: 40 Copynumber: 2.0 Consensus size: 42
37205418 CTGAGCTTTT
* * *
37205428 GGACACAGGCGATG-ACACGGGCGTGT-CTAGGCCTTGTGAA
1 GGACACAGGCCAGGAACACGGGCGTGTGCTAGGCCGTGTGAA
*
37205468 GGACACAGGCCAGGAACACGGGCGTGTGCTTGGCCGTGTGAA
1 GGACACAGGCCAGGAACACGGGCGTGTGCTAGGCCGTGTGAA
37205510 AACCCCTGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
40 12 0.33
41 12 0.33
42 12 0.33
ACGTcount: A:0.22, C:0.23, G:0.39, T:0.16
Consensus pattern (42 bp):
GGACACAGGCCAGGAACACGGGCGTGTGCTAGGCCGTGTGAA
Found at i:37206092 original size:21 final size:21
Alignment explanation
Indices: 37206068--37206108 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
37206058 ACATGAAGTA
37206068 ATTCACCATTCTGACATTTCT
1 ATTCACCATTCTGACATTTCT
*
37206089 ATTCACCATTCTGATATTTC
1 ATTCACCATTCTGACATTTC
37206109 AACAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.27, G:0.05, T:0.44
Consensus pattern (21 bp):
ATTCACCATTCTGACATTTCT
Found at i:37210224 original size:80 final size:80
Alignment explanation
Indices: 37210140--37210288 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
37210130 TATGGTAACC
* * * *
37210140 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
37210204 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
37210220 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
37210285 CCGG
66 CCGG
37210289 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:37210230 original size:40 final size:38
Alignment explanation
Indices: 37210181--37210288 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
37210171 ATCACGATTT
*
37210181 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
37210221 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
37210261 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
37210289 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:37216030 original size:80 final size:80
Alignment explanation
Indices: 37215946--37216094 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
37215936 TATGGTAACC
* * * *
37215946 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
37216010 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
37216026 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
37216091 CCGG
66 CCGG
37216095 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:37216036 original size:40 final size:38
Alignment explanation
Indices: 37215987--37216094 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
37215977 ATCACGATTT
*
37215987 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
37216027 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
37216067 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
37216095 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:37224150 original size:80 final size:80
Alignment explanation
Indices: 37224066--37224214 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
37224056 TATGGTAACC
* * * *
37224066 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
37224130 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
37224146 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
37224211 CCGG
66 CCGG
37224215 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:37224156 original size:40 final size:38
Alignment explanation
Indices: 37224107--37224214 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
37224097 ATCACGATTT
*
37224107 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
37224147 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
37224187 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
37224215 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:37228376 original size:14 final size:14
Alignment explanation
Indices: 37228357--37228386 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37228347 AAGAGAGAAT
*
37228357 GATGATGGATGAGG
1 GATGATGAATGAGG
37228371 GATGATGAATGAGG
1 GATGATGAATGAGG
37228385 GA
1 GA
37228387 ATGAAGGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (14 bp):
GATGATGAATGAGG
Found at i:37232771 original size:47 final size:47
Alignment explanation
Indices: 37232717--37232910 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
37232707 TTAGGATTTT
** * *
37232717 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
37232764 ATGTGATGAATGTGAACATGCATATATGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
37232811 ATGTGATGAATGTTAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
37232858 ATGTGGTGAATATGAATATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
37232905 ATGTGA
1 ATGTGA
37232911 AATATGTATG
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:37233037 original size:98 final size:96
Alignment explanation
Indices: 37232868--37233064 Score: 299
Period size: 98 Copynumber: 2.0 Consensus size: 96
37232858 ATGTGGTGAA
*
37232868 TATGAATATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 TATGAATATGCA-ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
*
37232933 GTGGTAAAATCGAATGGCTAATGTGAAATATG
65 GTGGTAAAACCGAATGGCTAATGTGAAATATG
37232965 TATGAGATATGC-ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTA
1 TATGA-ATATGCAATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTA
* *
37233028 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
62 TATGTGGTAAAACCGAATGGCTAATGTGAAATATG
37233063 TA
1 TA
37233065 GGCGATGTGC
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
95 1 0.01
96 27 0.29
97 7 0.08
98 57 0.62
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (96 bp):
TATGAATATGCAATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
TGGTAAAACCGAATGGCTAATGTGAAATATG
Found at i:37233080 original size:50 final size:48
Alignment explanation
Indices: 37232880--37233064 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
37232870 TGAATATGCA
37232880 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
**
37232928 TATATGTGGTAAAATCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
37232976 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
37233026 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
37233065 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 77 0.62
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:37233318 original size:37 final size:37
Alignment explanation
Indices: 37233210--37233318 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
37233200 GGAAATATAT
*
37233210 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
37233247 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
37233284 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
37233319 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:37234707 original size:23 final size:23
Alignment explanation
Indices: 37234641--37234707 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
37234631 ATGTATCCGG
37234641 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * *
37234664 GCT-AGT---G-ATA-TATTCGG
1 GCTAAGTCCCGAAGAGCATTCGT
37234681 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
37234704 GCTA
1 GCTA
37234708 GTGATGTATC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 8 0.25
18 5 0.16
19 1 0.03
21 1 0.03
22 5 0.16
23 12 0.38
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:37234888 original size:40 final size:40
Alignment explanation
Indices: 37234587--37234887 Score: 503
Period size: 40 Copynumber: 7.5 Consensus size: 40
37234577 GAGAATTGAG
* *
37234587 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
37234627 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
37234667 AGTGATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
37234707 AGTGATGTATCCGGGATAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
37234747 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
37234787 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
37234827 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
37234867 GGTGTTATATCCGGGCTAAGT
1 AGTGATGTATCCGGGCTAAGT
37234888 TGAAAACCCT
Statistics
Matches: 247, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 247 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:37238918 original size:55 final size:53
Alignment explanation
Indices: 37238831--37239085 Score: 213
Period size: 55 Copynumber: 4.8 Consensus size: 53
37238821 ATTAGGGTTT
* *
37238831 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * *
37238886 AAGGATATCATGTAAGGCCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTT--TCTAAGG-C
* * *
37238942 AAGG-T-CACATGTAAGACCATG-CTAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 AAGGATAC-CATGTAAGACCATGTC-AAGACATGGAATTGGTAAGTTTC-TAAGGC
*
37238994 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * * * *
37239043 AAGGATACCACGTAAGAACATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAG
37239086 GTATCCGTGT
Statistics
Matches: 164, Mismatches: 24, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
48 2 0.01
49 35 0.21
52 7 0.04
53 36 0.22
54 15 0.09
55 65 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:37239026 original size:53 final size:53
Alignment explanation
Indices: 37238831--37239038 Score: 217
Period size: 55 Copynumber: 3.8 Consensus size: 53
37238821 ATTAGGGTTT
* * *
37238831 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * *
37238886 AAGGATATCATGTAAGGCCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGG-C
* *
37238942 AAGG-T-CACATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATAC-CATGTAAGACCATGTC-AAGACATGGCATTGGTAAGTTCATAAGGC
* *
37238994 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
37239039 TCAAAAGGAT
Statistics
Matches: 127, Mismatches: 17, Indels: 20
0.77 0.10 0.12
Matches are distributed among these distances:
52 6 0.05
53 40 0.31
54 11 0.09
55 66 0.52
56 4 0.03
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:37239037 original size:108 final size:110
Alignment explanation
Indices: 37238839--37239038 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
37238829 TTAAGGATAC
* *
37238839 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGGC
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
*
37238904 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGTCA
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTCA
* * *
37238949 CATGTAAGACCATGCTAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGA
* *
37239011 CCATGTCGAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
37239039 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.23
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTCA
Found at i:37239299 original size:16 final size:16
Alignment explanation
Indices: 37239278--37239308 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37239268 ATAAATTTGA
37239278 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
37239294 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
37239309 AGTGAATAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:37240009 original size:2 final size:2
Alignment explanation
Indices: 37240002--37240030 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37239992 AGTTATACTT
37240002 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37240031 TCCTTATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37246268 original size:23 final size:23
Alignment explanation
Indices: 37246216--37246294 Score: 122
Period size: 23 Copynumber: 3.4 Consensus size: 23
37246206 AGTCTTATAA
* *
37246216 TGGGAAGCTCACACAGAGCCATTT
1 TGGGAAGCTCATAAAGAGCC-TTT
*
37246240 TAGGAAGCTCATAAAGAGCCTTT
1 TGGGAAGCTCATAAAGAGCCTTT
37246263 TGGGAAGCTCATAAAGAGCCTTT
1 TGGGAAGCTCATAAAGAGCCTTT
37246286 TGGGAAGCT
1 TGGGAAGCT
37246295 TATCCAGGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
23 34 0.67
24 17 0.33
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (23 bp):
TGGGAAGCTCATAAAGAGCCTTT
Found at i:37249428 original size:48 final size:48
Alignment explanation
Indices: 37249357--37249692 Score: 327
Period size: 48 Copynumber: 7.0 Consensus size: 48
37249347 TACTAGGGTT
* * *
37249357 ATATGTGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATTGGCTTTG
1 ATATGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGGCATTG
*
37249405 ATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT-
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * * *
37249452 ATTATATGAGCCAGTGTAAGACCATGTTTGGAACATAGTATCGACATTG
1 A-TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * * * *
37249501 TTGTATGAGCCAGTGTAAGACCATGTTTGGAACATGGCCTCGGAATT-
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * * * * **
37249548 TTCATGAGAGCTAGTGTAAGACCATGTTTGGAATATGGCCTTAGCATTG
1 AT-ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * * * * *
37249597 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATTGCATCGGCATTG
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * * * *
37249645 ATATATGAGAGCCAGTGTAAAATCATGTCTGGGACATGGCATCGGCAT
1 --ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
37249693 CTTAACCTTT
Statistics
Matches: 245, Mismatches: 36, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
47 6 0.02
48 196 0.80
49 2 0.01
50 41 0.17
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (48 bp):
ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
Found at i:37249622 original size:144 final size:142
Alignment explanation
Indices: 37249357--37249689 Score: 373
Period size: 144 Copynumber: 2.3 Consensus size: 142
37249347 TACTAGGGTT
* * * * *
37249357 ATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCTTTGATATGTGAGCTAGTGTA
1 ATATATGAGCCAGTGTAAGACCATGT-TTGGACATGGCATCGGATTT-ATATGAGAGCTAGTGTA
* *
37249422 AGACCATGTTTGGAACATGGCATCGGCATTATTATATGAGCCAGTGTAAGACCATGTTTGGAACA
64 AGACCATGTTTGGAACATGGCATCAGCATTATTATATGAGCCAGTGTAAGACCATGTCTGGAACA
*
37249487 TAGTATCGACATTG
129 TAGCATCGACATTG
* * *
37249501 TTGTATGAGCCAGTGTAAGACCATGTTTGGAACATGGCCTCGGAATTT-TCATGAGAGCTAGTGT
1 ATATATGAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCGG-ATTTAT-ATGAGAGCTAGTGT
* * * * * *
37249565 AAGACCATGTTTGGAATATGGCCTTAGCATTGTTATGA-GAGCTAGTGTAAGACCATGTCTGGGA
63 AAGACCATGTTTGGAACATGGCATCAGCATTATTAT-ATGAGCCAGTGTAAGACCATGTCTGGAA
* *
37249629 CATTGCATCGGCATTG
127 CATAGCATCGACATTG
* * *
37249645 ATATATGAGAGCCAGTGTAAAATCATGTCTGGGACATGGCATCGG
1 ATATAT--GAGCCAGTGTAAGACCATGT-TTGGACATGGCATCGG
37249690 CATCTTAACC
Statistics
Matches: 157, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
143 4 0.03
144 117 0.75
145 4 0.03
146 29 0.18
147 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (142 bp):
ATATATGAGCCAGTGTAAGACCATGTTTGGACATGGCATCGGATTTATATGAGAGCTAGTGTAAG
ACCATGTTTGGAACATGGCATCAGCATTATTATATGAGCCAGTGTAAGACCATGTCTGGAACATA
GCATCGACATTG
Found at i:37257826 original size:11 final size:11
Alignment explanation
Indices: 37257779--37257827 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
37257769 GACTTTGATA
37257779 TACATGAT-TG
1 TACATGATATG
*
37257789 GACATGATATG
1 TACATGATATG
**
37257800 CGCATGATATG
1 TACATGATATG
37257811 T--ATGATATG
1 TACATGATATG
37257820 TACATGAT
1 TACATGAT
37257828 GTATTCATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
9 9 0.28
10 7 0.22
11 16 0.50
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (11 bp):
TACATGATATG
Found at i:37257915 original size:25 final size:25
Alignment explanation
Indices: 37257875--37257945 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
37257865 GAGGAAGTGC
* *
37257875 AAAAGGGTTTTTGCCCCAGTTTACCG
1 AAAAGGG-CTTTGCCCCAGTTTACCA
*
37257901 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
37257926 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
37257946 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 35 0.83
26 7 0.17
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:37257958 original size:24 final size:24
Alignment explanation
Indices: 37257884--37257972 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 24
37257874 CAAAAGGGTT
*
37257884 TTTGCCCCAGTTTACCGAAAAG-GGC
1 TTTGCCCCAG-TTATC-AAAAGAGGC
37257909 TTTGCCCCAGTTTATCAAAA-AGGGC
1 TTTGCCCCAG-TTATCAAAAGA-GGC
*
37257934 TTTGCCCCAGTTATTAAAAGAGGC
1 TTTGCCCCAGTTATCAAAAGAGGC
**
37257958 TAGGCCTCCAGTTAT
1 TTTGCC-CCAGTTAT
37257973 ATGATAAAGC
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
24 19 0.34
25 37 0.66
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
TTTGCCCCAGTTATCAAAAGAGGC
Found at i:37258200 original size:30 final size:31
Alignment explanation
Indices: 37258166--37258248 Score: 116
Period size: 30 Copynumber: 2.7 Consensus size: 31
37258156 CTTTTACAGT
37258166 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
37258196 AAAGGCTTCGGCCCAATGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
37258227 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
37258249 TTGAGATTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 25 0.54
31 21 0.46
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:37262905 original size:71 final size:71
Alignment explanation
Indices: 37262821--37262984 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37262811 CGATTTGTCT
37262821 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37262886 CTTTCA
66 CTTTCA
37262892 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37262957 CTTTCA
66 CTTTCA
37262963 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37262985 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37263022 original size:71 final size:70
Alignment explanation
Indices: 37262821--37263018 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37262811 CGATTTGTCT
* * * *
37262821 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37262886 CTTTCA
65 CTTTCA
* * * *
37262892 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37262957 CTTTCA
65 CTTTCA
* *
37262963 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37263019 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37270451 original size:62 final size:65
Alignment explanation
Indices: 37270385--37270562 Score: 177
Period size: 66 Copynumber: 2.7 Consensus size: 65
37270375 TAGTACCACT
*
37270385 CATGCGACCAAGCCGATTTGTCTT-A-G-CTCTCTT-TCTACAT-GTGTCCTTCACTTGGAATCA
1 CATGCGACCAAGAC-ATTT-TCTTCACGACTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCA
37270445 CG
64 CG
*** * *
37270447 CATGCGACCTCTACATTTTTTTCACGTAGTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCAC
1 CATGCGACCAAGACATTTTCTTCACG-ACTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCAC
37270512 G
65 G
*
37270513 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCAAG--ACATTT-TC-TTCACG-A-CTCTCTTGTCTACATGG
37270563 GATACATCTC
Statistics
Matches: 95, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
60 3 0.03
61 5 0.05
62 11 0.12
64 6 0.06
65 7 0.07
66 32 0.34
68 6 0.06
69 1 0.01
70 8 0.08
71 16 0.17
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (65 bp):
CATGCGACCAAGACATTTTCTTCACGACTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACG
Found at i:37270499 original size:66 final size:70
Alignment explanation
Indices: 37270408--37270562 Score: 259
Period size: 66 Copynumber: 2.3 Consensus size: 70
37270398 CGATTTGTCT
37270408 TAGCTCTCTT-TCTACAT-GTGTCCTTCACTTGGAATCACGCATGCGACCT-CTACATTT-T-TT
1 TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTACTACATTTATCTT
37270468 TCACG
66 TCACG
37270473 TAG-TCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCT
1 TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTA-CTACATTTATCT
37270537 TTCACG
65 TTCACG
37270543 TAGCTCTCTTGTCTACATGG
1 TAGCTCTCTTGTCTACATGG
37270563 GATACATCTC
Statistics
Matches: 83, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
64 6 0.07
65 10 0.12
66 32 0.39
68 8 0.10
69 1 0.01
70 10 0.12
71 16 0.19
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (70 bp):
TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTACTACATTTATCTT
TCACG
Found at i:37270590 original size:68 final size:67
Alignment explanation
Indices: 37270412--37270596 Score: 186
Period size: 66 Copynumber: 2.8 Consensus size: 67
37270402 TTGTCTTAGC
* * *
37270412 TCTCTT-TCTACAT-GTGTCCTTCACTTGGAATCACGCATGCGACCT--CTACATTTTTTTCACG
1 TCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTTTTTCACG
37270473 TAG
65 TAG
* * *
37270476 TCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCA
1 TCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTT-T-TTTCA
37270541 CGTAG
63 CGTAG
* * *
37270546 CTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 -TCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
37270597 TACAGGGTGT
Statistics
Matches: 107, Mismatches: 6, Indels: 12
0.86 0.05 0.10
Matches are distributed among these distances:
64 6 0.06
65 7 0.07
66 32 0.30
68 30 0.28
69 2 0.02
70 11 0.10
71 19 0.18
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.36
Consensus pattern (67 bp):
TCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTTTTTCACGT
AG
Found at i:37274919 original size:40 final size:40
Alignment explanation
Indices: 37274854--37275094 Score: 297
Period size: 40 Copynumber: 6.0 Consensus size: 40
37274844 CGGAATACAA
* ** * * *
37274854 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
37274894 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
37274934 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
37274974 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
37275014 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
37275054 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
37275094 C
1 C
37275095 TGGGTATCAT
Statistics
Matches: 179, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 178 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:37276980 original size:29 final size:29
Alignment explanation
Indices: 37276946--37277108 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
37276936 TACTCGATTT
* * *
37276946 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
37276975 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
37277004 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
37277033 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
37277062 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
37277091 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
37277109 TATTTCCAGC
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 120 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:37277038 original size:58 final size:59
Alignment explanation
Indices: 37276945--37277133 Score: 224
Period size: 58 Copynumber: 3.3 Consensus size: 59
37276935 ATACTCGATT
** * ** * * *
37276945 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
37277003 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
37277062 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
*
37277120 T-GCACAATTAGTGC
1 TCGCACACTTAGTGC
37277134 TAATCTCGTC
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
57 4 0.03
58 113 0.96
59 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:37277109 original size:29 final size:29
Alignment explanation
Indices: 37277005--37277133 Score: 249
Period size: 29 Copynumber: 4.4 Consensus size: 29
37276995 CTTCGAGCTC
37277005 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37277034 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37277063 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37277092 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
37277121 GCACAATTAGTGC
1 GCACACTTAGTGC
37277134 TAATCTCGTC
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:37284466 original size:29 final size:29
Alignment explanation
Indices: 37284432--37284565 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 29
37284422 TACTCGATTT
* * *
37284432 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
37284461 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
37284490 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
37284519 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
37284548 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
37284566 TATTTCCAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:37284524 original size:58 final size:59
Alignment explanation
Indices: 37284431--37284590 Score: 200
Period size: 58 Copynumber: 2.7 Consensus size: 59
37284421 ATACTCGATT
** * ** * * *
37284431 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
37284489 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
37284548 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
37284591 TAATCTCGTC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 85 0.94
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:37284566 original size:29 final size:29
Alignment explanation
Indices: 37284491--37284590 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
37284481 CTTCGAGCTC
37284491 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37284520 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37284549 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37284578 GCACACTTAGTGC
1 GCACACTTAGTGC
37284591 TAATCTCGTC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:37298187 original size:40 final size:40
Alignment explanation
Indices: 37298102--37298252 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
37298092 AATTGAATGA
* * *
37298102 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
37298142 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
37298183 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
37298222 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
37298253 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:37298266 original size:40 final size:40
Alignment explanation
Indices: 37298138--37298268 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
37298128 TATGCTGGAA
* * *
37298138 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
37298178 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
37298218 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
37298258 ATTATATCCGG
1 ATTATATCCGG
37298269 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:37316660 original size:28 final size:28
Alignment explanation
Indices: 37316595--37316695 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37316585 ATAGTGGATC
*
37316595 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
37316624 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37316652 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
37316682 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37316696 CATTCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37320911 original size:29 final size:29
Alignment explanation
Indices: 37320869--37320927 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
37320859 TAGAGTGATG
37320869 AAAGAATTGTGAACAAAGGAAAAGAAGTA
1 AAAGAATTGTGAACAAAGGAAAAGAAGTA
37320898 AAAGAATTGTGAACAAAGGAAAAGAAGTA
1 AAAGAATTGTGAACAAAGGAAAAGAAGTA
37320927 A
1 A
37320928 CAAAAGTGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.59, C:0.03, G:0.24, T:0.14
Consensus pattern (29 bp):
AAAGAATTGTGAACAAAGGAAAAGAAGTA
Found at i:37320948 original size:29 final size:29
Alignment explanation
Indices: 37320869--37320950 Score: 96
Period size: 29 Copynumber: 2.8 Consensus size: 29
37320859 TAGAGTGATG
* *
37320869 AAAGAATTGTGAACAAAGGAAAAGAAGTA
1 AAAGAAGTGAGAACAAAGGAAAAGAAGTA
* *
37320898 AAAGAATTGTGAACAAAGGAAAAGAAGTA
1 AAAGAAGTGAGAACAAAGGAAAAGAAGTA
37320927 ACAA-AAGTGAGAA-AAAGAGAAAAG
1 A-AAGAAGTGAGAACAAAG-GAAAAG
37320951 TGAAACAAAG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
28 4 0.08
29 43 0.88
30 2 0.04
ACGTcount: A:0.61, C:0.04, G:0.24, T:0.11
Consensus pattern (29 bp):
AAAGAAGTGAGAACAAAGGAAAAGAAGTA
Found at i:37322216 original size:13 final size:13
Alignment explanation
Indices: 37322198--37322227 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37322188 TTTTTTTTTT
37322198 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
*
37322211 AAAAAAGAAAAAG
1 AAAAAAAAAAAAG
37322224 AAAA
1 AAAA
37322228 TTGAAGAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:37325054 original size:12 final size:13
Alignment explanation
Indices: 37325033--37325061 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37325023 TTATAACATC
37325033 AAAAATTAAAAAT
1 AAAAATTAAAAAT
37325046 AAAAA-TAAAAAT
1 AAAAATTAAAAAT
37325058 AAAA
1 AAAA
37325062 GAATCGATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAATTAAAAAT
Found at i:37327467 original size:14 final size:14
Alignment explanation
Indices: 37327448--37327474 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37327438 ATATTTGCAC
37327448 TATTTTAATATTAT
1 TATTTTAATATTAT
37327462 TATTTTAATATTA
1 TATTTTAATATTA
37327475 AAAAATTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TATTTTAATATTAT
Done.