Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 137 of 345
Found at i:37329481 original size:34 final size:34
Alignment explanation
Indices: 37329396--37329510 Score: 117
Period size: 33 Copynumber: 3.4 Consensus size: 34
37329386 TTGCTACTGA
* * * *
37329396 ATTGATTTATGATAAGCATATTAATTACAATTGT
1 ATTGATCTATTATAAGCATATTAATTACTATCGT
* ** *
37329430 A-TGACCGGTTATAAGCATATTAAGTACTATCGT
1 ATTGATCTATTATAAGCATATTAATTACTATCGT
* **
37329463 ATTGATCTATTATAAGCATATTAATTGCTA-CCA
1 ATTGATCTATTATAAGCATATTAATTACTATCGT
37329496 ATTGATCTATTATAA
1 ATTGATCTATTATAA
37329511 TCCCATTAAA
Statistics
Matches: 65, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
33 41 0.63
34 24 0.37
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (34 bp):
ATTGATCTATTATAAGCATATTAATTACTATCGT
Found at i:37329505 original size:33 final size:34
Alignment explanation
Indices: 37329438--37329510 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
37329428 GTATGACCGG
**
37329438 TTATAAGCATATTAAGTACTATCGTATTGATCTA
1 TTATAAGCATATTAAGTACTATCCAATTGATCTA
* *
37329472 TTATAAGCATATTAATTGCTA-CCAATTGATCTA
1 TTATAAGCATATTAAGTACTATCCAATTGATCTA
37329505 TTATAA
1 TTATAA
37329511 TCCCATTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
33 16 0.46
34 19 0.54
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (34 bp):
TTATAAGCATATTAAGTACTATCCAATTGATCTA
Found at i:37329519 original size:33 final size:34
Alignment explanation
Indices: 37329463--37329538 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 34
37329453 GTACTATCGT
* *
37329463 ATTGATCTATTATAAGCATATTAATTGCTACCA-
1 ATTGATCTATTATAAGCACATTAAATGCTACCAC
* * * *
37329496 ATTGATCTATTATAATCCCATTAAATGTTATCAC
1 ATTGATCTATTATAAGCACATTAAATGCTACCAC
37329530 ATTGATCTA
1 ATTGATCTA
37329539 AGCATGCCAC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 27 0.75
34 9 0.25
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.41
Consensus pattern (34 bp):
ATTGATCTATTATAAGCACATTAAATGCTACCAC
Found at i:37329803 original size:89 final size:89
Alignment explanation
Indices: 37329630--37329804 Score: 197
Period size: 89 Copynumber: 2.0 Consensus size: 89
37329620 CCATAGCCAG
** * * *
37329630 AGGCAGATTCTATCTGTGAGATATTTCTTGTCCATCCACAGTTAGAGGCAAATTCTAACTGTAGG
1 AGGCAGATTCTATCTACGAGATATTTCTTGTCCATCCACAGCTAGAGGCAAATTCCAACTGCAGG
* * * *
37329695 ATTTTGTTGTGTTTTCACATCTTA
66 ATTTTGCTATGTGTCCACATCTTA
* * * ** * * *
37329719 AGGCAGATTGTATCTACGAGATTTTTGTTGTGTATCCACAGCTAGAGGTAGATTCCATCTGCAGG
1 AGGCAGATTCTATCTACGAGATATTTCTTGTCCATCCACAGCTAGAGGCAAATTCCAACTGCAGG
37329784 ATTTTGCTATGTGTCCACATC
66 ATTTTGCTATGTGTCCACATC
37329805 CATTGGTAGT
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
89 69 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (89 bp):
AGGCAGATTCTATCTACGAGATATTTCTTGTCCATCCACAGCTAGAGGCAAATTCCAACTGCAGG
ATTTTGCTATGTGTCCACATCTTA
Found at i:37331625 original size:37 final size:36
Alignment explanation
Indices: 37331570--37331661 Score: 130
Period size: 37 Copynumber: 2.4 Consensus size: 36
37331560 CTTATTACGA
37331570 AGTCTTACCCGGACATAATCTCCACACGTAGTCATCG
1 AGTC-TACCCGGACATAATCTCCACACGTAGTCATCG
*
37331607 AGTCGTACCCGGACATAATCTCCACATGTAGTCATCG
1 AGTC-TACCCGGACATAATCTCCACACGTAGTCATCG
*
37331644 GGTCTCACCCGGAACATA
1 AGTCT-ACCCGG-ACATA
37331662 TTTCCAAGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
36 1 0.02
37 44 0.88
38 5 0.10
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (36 bp):
AGTCTACCCGGACATAATCTCCACACGTAGTCATCG
Found at i:37331774 original size:49 final size:49
Alignment explanation
Indices: 37331710--37332275 Score: 925
Period size: 49 Copynumber: 11.6 Consensus size: 49
37331700 ATTCACATTA
* * * * *
37331710 GCCATTCGGCTTTATCACATATATATACATTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
* * *
37331759 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
* *
37331808 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
37331857 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
* * *
37331906 GCTATTAGGCCTTATCACATATATAGACACTTTCACATTCGTCACATCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
* * * *
37331955 GCCATTAGGCCTTATCACATATATATACAGTTTCACATTCCTCACGTCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
* * * *
37332004 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCGTCACGTCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
*
37332053 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
37332102 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
*
37332151 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCA
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
37332200 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
37332249 GCCATTAGGCCTTATCACATATATACA
1 GCCATTAGGCCTTATCACATATATACA
37332276 TCTCATACAT
Statistics
Matches: 496, Mismatches: 21, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 496 1.00
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
Found at i:37335814 original size:10 final size:10
Alignment explanation
Indices: 37335801--37335858 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
37335791 ATAATTTTTT
37335801 TAAAAAATTA
1 TAAAAAATTA
37335811 TAAAAACA-T-
1 TAAAAA-ATTA
*
37335820 TAAAAACTTA
1 TAAAAAATTA
37335830 TAAAAACA--A
1 TAAAAA-ATTA
37335839 TAAAAAATTA
1 TAAAAAATTA
37335849 TAGAAAAATT
1 TA-AAAAATT
37335859 TTGTTACTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
8 1 0.03
9 14 0.36
10 16 0.41
11 8 0.21
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:37335822 original size:19 final size:19
Alignment explanation
Indices: 37335800--37335855 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
37335790 TATAATTTTT
37335800 TTAAAAAATTATAAAAACA
1 TTAAAAAATTATAAAAACA
*
37335819 TTAAAAACTTATAAAAACA
1 TTAAAAAATTATAAAAACA
*
37335838 ATAAAAAATTATAGAAAA
1 TTAAAAAATTATA-AAAA
37335856 ATTTTGTTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 29 0.88
20 4 0.12
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (19 bp):
TTAAAAAATTATAAAAACA
Found at i:37336449 original size:152 final size:152
Alignment explanation
Indices: 37336168--37336474 Score: 578
Period size: 152 Copynumber: 2.0 Consensus size: 152
37336158 CAACACATAA
* *
37336168 ATTTGAAACCATATATCTTTAAAAACTTTTTCCAAGCTAAATAATAAAAGATAAGATATTTTAGT
1 ATTTAAAACCATATATCTTTAAAAACTTTTTCCAAGCTAAATAATAAAAAATAAGATATTTTAGT
37336233 ATGATAAACTTGAATCATTAATTAACTTATTTAGGTCCTAAAAATTAGTATTTTAGAAGATTTTT
66 ATGATAAACTTGAATCATTAATTAACTTATTTAGGTCCTAAAAATTAGTATTTTAGAAGATTTTT
37336298 AAAATTTTAACATTCTTTATAT
131 AAAATTTTAACATTCTTTATAT
* *
37336320 ATTTAAAACCATATATCTTTAAAAACTTTTTCCAAGTTGAATAATAAAAAATAAGATATTTTAGT
1 ATTTAAAACCATATATCTTTAAAAACTTTTTCCAAGCTAAATAATAAAAAATAAGATATTTTAGT
37336385 ATGATAAACTTGAATCATTAATTAACTTATTTAGGTCCTAAAAATTAGTATTTTAGAAGATTTTT
66 ATGATAAACTTGAATCATTAATTAACTTATTTAGGTCCTAAAAATTAGTATTTTAGAAGATTTTT
37336450 AAAATTTTAACATTCTTTATAT
131 AAAATTTTAACATTCTTTATAT
37336472 ATT
1 ATT
37336475 CTTTAGATTT
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
152 151 1.00
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (152 bp):
ATTTAAAACCATATATCTTTAAAAACTTTTTCCAAGCTAAATAATAAAAAATAAGATATTTTAGT
ATGATAAACTTGAATCATTAATTAACTTATTTAGGTCCTAAAAATTAGTATTTTAGAAGATTTTT
AAAATTTTAACATTCTTTATAT
Found at i:37336506 original size:19 final size:19
Alignment explanation
Indices: 37336481--37336523 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
37336471 TATTCTTTAG
*
37336481 ATTTTTTTAAAAAATAT-A
1 ATTTTTTTTAAAAATATAA
37336499 ATTTTTTTTAAAAATATAA
1 ATTTTTTTTAAAAATATAA
37336518 ATTTTT
1 ATTTTT
37336524 GAATTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTTTTTAAAAATATAA
Found at i:37336534 original size:18 final size:19
Alignment explanation
Indices: 37336513--37336549 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
37336503 TTTTTAAAAA
37336513 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAATTTT
*
37336531 TATAAATATTTTTAATTTT
1 TATAAATATTTTGAATTTT
37336550 AATTTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:37341822 original size:20 final size:20
Alignment explanation
Indices: 37341794--37341845 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
37341784 CGGGCCAGGG
*
37341794 ACACAGGCGTGTCCCAAAGT
1 ACACGGGCGTGTCCCAAAGT
37341814 ACACGGGCGTGTCCCAAAGT
1 ACACGGGCGTGTCCCAAAGT
37341834 ACACGGGCGTGT
1 ACACGGGCGTGT
37341846 GCATTGCTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.31, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAAGT
Found at i:37342826 original size:37 final size:37
Alignment explanation
Indices: 37342776--37342853 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
37342766 TATAAAAGAA
37342776 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
37342813 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
37342850 GTCT
1 GTCT
37342854 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:37343016 original size:49 final size:49
Alignment explanation
Indices: 37342956--37343078 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
37342946 CATATATTTT
*
37342956 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
37343005 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
37343054 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
37343079 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:37365640 original size:24 final size:24
Alignment explanation
Indices: 37365608--37365765 Score: 255
Period size: 24 Copynumber: 6.6 Consensus size: 24
37365598 TATCTCAAAT
*
37365608 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
37365632 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
37365656 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
37365680 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
37365704 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
37365728 GCACTATGTGTGCGATTT-CTATA
1 GCACTATGTGTGCGATTTACTATG
*
37365751 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
37365766 ACATAATAAG
Statistics
Matches: 128, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
23 19 0.15
24 109 0.85
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:37373328 original size:24 final size:24
Alignment explanation
Indices: 37373296--37373502 Score: 351
Period size: 24 Copynumber: 8.6 Consensus size: 24
37373286 TATCTCAAAT
*
37373296 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
37373320 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37373344 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
37373368 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
37373392 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37373416 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
37373440 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
37373464 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
37373488 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
37373503 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:37384868 original size:12 final size:12
Alignment explanation
Indices: 37384851--37384875 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37384841 TTATTAAATG
37384851 AATTAAAAGCCA
1 AATTAAAAGCCA
37384863 AATTAAAAGCCA
1 AATTAAAAGCCA
37384875 A
1 A
37384876 TTTTTGCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AATTAAAAGCCA
Found at i:37392801 original size:12 final size:12
Alignment explanation
Indices: 37392761--37392804 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
37392751 AATCCTCCTA
37392761 TCTT-TTTTTAT
1 TCTTATTTTTAT
* *
37392772 TCCTATTCTTAT
1 TCTTATTTTTAT
37392784 TCTTATTTTTAT
1 TCTTATTTTTAT
*
37392796 TTTTATTTT
1 TCTTATTTT
37392805 CATTTCAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 3 0.11
12 24 0.89
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (12 bp):
TCTTATTTTTAT
Found at i:37395905 original size:40 final size:40
Alignment explanation
Indices: 37395846--37396053 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
37395836 CAATTGAATG
* * *
37395846 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
37395886 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37395926 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37395966 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37396006 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
37396046 ATATCCGG
1 ATATCCGG
37396054 TTGTAATTCC
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:37395984 original size:80 final size:80
Alignment explanation
Indices: 37395848--37396053 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
37395838 ATTGAATGAT
* * * * * *
37395848 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
37395913 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
37395928 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
37395993 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
37396008 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
37396054 TTGTAATTCC
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:37404031 original size:40 final size:40
Alignment explanation
Indices: 37403972--37404179 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
37403962 CAATTGAATG
* * *
37403972 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
37404012 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37404052 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37404092 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37404132 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
37404172 ATATCCGG
1 ATATCCGG
37404180 TTGTATCCGA
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:37404110 original size:80 final size:80
Alignment explanation
Indices: 37403974--37404179 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
37403964 ATTGAATGAT
* * * * * *
37403974 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
37404039 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
37404054 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
37404119 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
37404134 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
37404180 TTGTATCCGA
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:37410666 original size:13 final size:13
Alignment explanation
Indices: 37410648--37410673 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37410638 AAAGAATATA
37410648 ATAACATGTTGTG
1 ATAACATGTTGTG
37410661 ATAACATGTTGTG
1 ATAACATGTTGTG
37410674 GGAGGAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
ATAACATGTTGTG
Found at i:37412106 original size:40 final size:40
Alignment explanation
Indices: 37412047--37412254 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 40
37412037 CAATTGAATG
* * * *
37412047 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
37412087 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37412127 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37412167 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
37412207 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
37412247 ATATCCGG
1 ATATCCGG
37412255 TTGTATTCCG
Statistics
Matches: 144, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:37412185 original size:80 final size:80
Alignment explanation
Indices: 37412049--37412254 Score: 252
Period size: 80 Copynumber: 2.6 Consensus size: 80
37412039 ATTGAATGAT
* * ** * * *
37412049 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
37412114 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
37412129 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
37412194 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
37412209 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
37412255 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 107 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:37420155 original size:29 final size:29
Alignment explanation
Indices: 37420121--37420250 Score: 172
Period size: 29 Copynumber: 4.5 Consensus size: 29
37420111 AACGATCTCA
*
37420121 CACACTTAGTGCCATGCAATTTAAGCTCG
1 CACACTTAGTGCCATACAATTTAAGCTCG
* *
37420150 CACACTTAGTGCCATATAATTTAAGTTCG
1 CACACTTAGTGCCATACAATTTAAGCTCG
* *
37420179 CACACTTAGTGCCATATAATTTAAGTTCG
1 CACACTTAGTGCCATACAATTTAAGCTCG
* * *
37420208 CACACTTAGTGCCATAC-CTTCCAAGCCCG
1 CACACTTAGTGCCATACAATT-TAAGCTCG
37420237 CACACTTAGTGCCA
1 CACACTTAGTGCCA
37420251 ATCTTGTCAC
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 2 0.02
29 90 0.98
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CACACTTAGTGCCATACAATTTAAGCTCG
Found at i:37421989 original size:38 final size:39
Alignment explanation
Indices: 37421821--37422011 Score: 312
Period size: 39 Copynumber: 4.9 Consensus size: 39
37421811 TATGGTAACC
** *
37421821 TGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 TGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
37421861 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
37421900 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
37421939 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-T
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
37421977 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
37422012 TCGAACATTC
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 36 0.25
39 90 0.63
40 16 0.11
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (39 bp):
TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:37429949 original size:79 final size:81
Alignment explanation
Indices: 37429848--37430032 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
37429838 ACGACTCGCT
** * *
37429848 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
37429911 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
37429928 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
37429992 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
37430008 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37430033 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:37430032 original size:40 final size:39
Alignment explanation
Indices: 37429841--37430032 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
37429831 GGATATAACG
* ** * *
37429841 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
37429881 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
37429921 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
37429960 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
37430000 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
37430033 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:37434636 original size:42 final size:42
Alignment explanation
Indices: 37434590--37434745 Score: 181
Period size: 42 Copynumber: 3.7 Consensus size: 42
37434580 CAAGACTATG
* *
37434590 TGTAAGACCATATCTGGGATATGGCATTAATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCA
*
37434632 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCA
* * * * *
37434674 TGTAAGACCGTAGCTGGGCTATTGGAATTGATACT-AGA-TCCTA
1 TGTAAGACCATATCTGGGATA-TGGCATTGATA-TGAGATTTC-A
* *
37434717 TGTAAGATCATATCTGGGTTATGGCATTG
1 TGTAAGACCATATCTGGGATATGGCATTG
37434746 GTGTAGTACT
Statistics
Matches: 97, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 66 0.68
43 30 0.31
44 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTCA
Found at i:37437163 original size:2 final size:2
Alignment explanation
Indices: 37437156--37437184 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37437146 ACATCCATGG
37437156 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37437185 GCTTACATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37439942 original size:3 final size:3
Alignment explanation
Indices: 37439934--37439958 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
37439924 TAAATAATGC
37439934 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
37439959 GTCATAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:37444932 original size:53 final size:54
Alignment explanation
Indices: 37444862--37445166 Score: 359
Period size: 55 Copynumber: 5.6 Consensus size: 54
37444852 AATTTACTAT
* * *
37444862 TGCCATGTCTTGACATGGTCTTACATGCTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
37444915 TGCCATGCCTTGGCATGGTCTTATATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* * * *
37444970 TGCCATGTCTTGACATGGTCTTACATGGTATCCTCGTCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
37445023 TGCCAT-TCTTTAGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGA-CATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* * * *
37445078 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* *
37445132 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
37445167 ATCTTACCAA
Statistics
Matches: 216, Mismatches: 26, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
52 9 0.04
53 72 0.33
54 44 0.20
55 82 0.38
56 9 0.04
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
Found at i:37445051 original size:108 final size:108
Alignment explanation
Indices: 37444862--37445158 Score: 486
Period size: 108 Copynumber: 2.7 Consensus size: 108
37444852 AATTTACTAT
*
37444862 TGCCATGTCTTGACATGGTCTTACATGCTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
*
37444927 GCATGGTCTTATATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* * * * * *
37444970 TGCCATGTCTTGACATGGTCTTACATGGTATCCTCGTCTTATGAACTCACCAATGCCATTCTTTA
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
37445035 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* * *
37445078 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTT
37445143 GGCATGGTCTTACATG
65 GGCATGGTCTTACATG
37445159 ATATCCTTAT
Statistics
Matches: 172, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
108 139 0.81
109 33 0.19
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:37445407 original size:44 final size:44
Alignment explanation
Indices: 37445359--37445442 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
37445349 TCCTTAACAG
* *
37445359 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCCA
* * *
37445403 TCAATTCTTTCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
37445443 GAGATATCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 32 0.94
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:37454308 original size:44 final size:45
Alignment explanation
Indices: 37454149--37454313 Score: 143
Period size: 49 Copynumber: 3.5 Consensus size: 45
37454139 AGATGCCGAC
* * ** *
37454149 GCCATGTCCTAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCT--CATATCTGAGTCGAT
** * *
37454197 GCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGACCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGC--TCATATCT-GAG-TCGAT
* * * *
37454246 GCCGTGTCCTAGAAAGGTCTTACACTGGCTC-TATCTGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCATATCTGAGTCGAT
37454290 GCCATGTCCCAGACAGGTCTTACA
1 GCCATGTCCCAGACAGGTCTTACA
37454314 TTGACACACA
Statistics
Matches: 93, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
44 25 0.27
45 2 0.02
46 4 0.04
47 18 0.19
48 16 0.17
49 28 0.30
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCATATCTGAGTCGAT
Found at i:37454407 original size:48 final size:48
Alignment explanation
Indices: 37454336--37454499 Score: 167
Period size: 48 Copynumber: 3.5 Consensus size: 48
37454326 AAGCTGACGC
* * * *
37454336 CATGTCCCAAACAGGTCTTACACTAGCTTTTATATCTCGAAGCAGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCGAAGCCGATG
* * **
37454384 CATGTCCCAGATATGCCTTACACTAGC-TCT-CGTCTC-AATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCGAA-GCCGATG
* * *
37454430 CATGTCCTAGACATGTCTTACACT-GACTTGC-ATCTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAG-CTT-CTATATCTCGAAGCCGATG
37454478 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
37454500 TTGACTCTCG
Statistics
Matches: 95, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.03
46 32 0.34
47 3 0.03
48 56 0.59
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCGAAGCCGATG
Found at i:37458680 original size:40 final size:40
Alignment explanation
Indices: 37458612--37458709 Score: 180
Period size: 40 Copynumber: 2.5 Consensus size: 40
37458602 AACCCAAGTA
*
37458612 CCTTCGGGATTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37458651 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37458691 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37458710 TTATCATCCG
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
39 13 0.23
40 44 0.77
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37462016 original size:28 final size:28
Alignment explanation
Indices: 37461947--37462047 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37461937 GACAAGATTG
* * * *
37461947 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
37461977 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37462005 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
37462034 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37462048 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37469973 original size:28 final size:28
Alignment explanation
Indices: 37469904--37470004 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
37469894 GACAAGATTG
* * * *
37469904 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
37469934 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
37469962 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
37469991 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37470005 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:37472696 original size:27 final size:28
Alignment explanation
Indices: 37472666--37472735 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
37472656 ATAATAAGTC
*
37472666 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
37472693 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
37472721 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37472736 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37480764 original size:27 final size:28
Alignment explanation
Indices: 37480734--37480803 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
37480724 ATAATAAGTC
*
37480734 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
37480761 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
37480789 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37480804 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37484633 original size:40 final size:40
Alignment explanation
Indices: 37484586--37484730 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
37484576 CTCGCACAAG
* *
37484586 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAT
*
37484626 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATTAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAT
* * * * * *
37484666 GCCTTC-GGATCTTAGTCCGGATGTAGCCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCATAAAT
37484707 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
37484731 CACTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.66
41 25 0.28
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAAT
Found at i:37496322 original size:28 final size:27
Alignment explanation
Indices: 37496259--37496328 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
37496249 ATAGTGAGTC
*
37496259 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
37496286 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
37496314 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37496329 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37503689 original size:40 final size:39
Alignment explanation
Indices: 37503607--37503783 Score: 175
Period size: 40 Copynumber: 4.6 Consensus size: 39
37503597 AATCAGGCAT
* ** * * *
37503607 CTTCGGG-TTTAG-CCGGATATAACCACTCGCACAAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAAATGC
* *
37503644 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AAATGC
37503684 CTTCGGGACTTAGCCCGGATATAGTCACTAGC-AAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAAATGC
* * * *
37503722 CTTC-GGATCTTAGTCCGGATGTAG-CGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCA-AAATGC
37503762 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
37503784 CACTCGAGTA
Statistics
Matches: 117, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
37 12 0.10
38 32 0.27
39 15 0.13
40 55 0.47
41 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAAATGC
Found at i:37503754 original size:78 final size:79
Alignment explanation
Indices: 37503607--37503783 Score: 209
Period size: 78 Copynumber: 2.3 Consensus size: 79
37503597 AATCAGGCAT
* * * *
37503607 CTTCGGG-TTTAG-CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
* *
37503670 ACTAGCATAAATGC
66 ACTAGCACAAAAGC
** * * *
37503684 CTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AATGCCTTCGGATCTTAGTCCGGATGTAG-C
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
*
37503747 GCTTAGCACAAAAGC
66 AC-TAGCACAAAAGC
37503762 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
37503784 CACTCGAGTA
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
77 9 0.11
78 60 0.71
79 16 0.19
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
ACTAGCACAAAAGC
Found at i:37509726 original size:51 final size:49
Alignment explanation
Indices: 37509648--37509843 Score: 214
Period size: 50 Copynumber: 3.9 Consensus size: 49
37509638 TCTATTGTGA
* *
37509648 GGTCACGTGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT
* * * * **
37509698 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* * * *
37509748 AGGTCATGTGTGTAGCACTAAGTGCAGGCTACTACT-TGTACCAAATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-TGCGTACCAGATAATT
* * *
37509798 GGTCTCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
37509844 GCCTTGTCTA
Statistics
Matches: 119, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
48 1 0.01
49 37 0.31
50 42 0.35
51 39 0.33
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
Found at i:37514477 original size:48 final size:48
Alignment explanation
Indices: 37514245--37514478 Score: 254
Period size: 48 Copynumber: 4.9 Consensus size: 48
37514235 ATGAGATCTC
* * * * * * *
37514245 GTGTAAGAGCATGTCTAGGACATGGCATTGGCATCAGAGATGGGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA-CTGATATGTGTGCCA
* * * *
37514294 GTGTAAGACCATGTTTGGGACATGGCATCCGTATTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATGTGTGCCA
* * **
37514342 ATGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATGTGTGCCA
* *
37514390 GTGTAAGACCATGTCTGGGACATGGCATCGACGA-TGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC-ACTGATATGTGTGCCA
* ** *
37514438 GTGTAACACCATGTCCAGGACATGGCATCGGCACCGATATG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATG
37514479 AGACTTCGTA
Statistics
Matches: 158, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
47 1 0.01
48 130 0.82
49 27 0.17
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATGTGTGCCA
Found at i:37514477 original size:96 final size:96
Alignment explanation
Indices: 37514245--37514478 Score: 283
Period size: 96 Copynumber: 2.4 Consensus size: 96
37514235 ATGAGATCTC
* * * *
37514245 GTGTAAGAGCATGTCTAGGACATGGCATTGGCATCAGAGATGGGAGCCAGTGTAAGACCATGTTT
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCA-CAGATATGGGAGCCAGTGTAAGACCATGTCT
37514310 GGGACATGGCATCCGTATTGATATGTGTGCCA
65 GGGACATGGCATCCGTATTGATATGTGTGCCA
* * * *** * *
37514342 ATGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGTGCCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATATGGGAGCCAGTGTAAGACCATGTCTG
*
37514407 GGACATGGCATCGACG-A-TGATATGTGTGCTA
66 GGACATGGCATC--CGTATTGATATGTGTGCCA
* * *
37514438 GTGTAACACCATGTCCAGGACATGGCATCGGCACCGATATG
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATATG
37514479 AGACTTCGTA
Statistics
Matches: 114, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
96 84 0.74
97 28 0.25
98 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATATGGGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCCGTATTGATATGTGTGCCA
Found at i:37523288 original size:27 final size:28
Alignment explanation
Indices: 37523254--37523320 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 28
37523244 TACTCGATCA
* * *
37523254 CGCACACTTAGTGCCGTATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
37523281 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
37523309 CGCACACTTAGT
1 CGCACACTTAGT
37523321 ACTGTACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
27 20 0.57
28 15 0.43
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:37524691 original size:18 final size:18
Alignment explanation
Indices: 37524659--37524696 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
37524649 TCCACACCCA
37524659 TTTTTTTTCATCATTATCTT
1 TTTTTTTTCA-CATT-TCTT
37524679 TTTTTTTTC-CATTTCTT
1 TTTTTTTTCACATTTCTT
37524696 T
1 T
37524697 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
20 9 0.50
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTCACATTTCTT
Found at i:37531138 original size:27 final size:28
Alignment explanation
Indices: 37531104--37531170 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 28
37531094 TACTCGATCA
* *
37531104 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
37531131 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
*
37531159 CACACACTTAGT
1 CGCACACTTAGT
37531171 ACTGTACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
27 21 0.60
28 14 0.40
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:37532540 original size:18 final size:18
Alignment explanation
Indices: 37532508--37532545 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
37532498 TCCACACCCA
37532508 TTTTTTTTCATCATTATCTT
1 TTTTTTTTCA-CATT-TCTT
37532528 TTTTTTTTC-CATTTCTT
1 TTTTTTTTCACATTTCTT
37532545 T
1 T
37532546 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
20 9 0.50
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTCACATTTCTT
Found at i:37539820 original size:31 final size:30
Alignment explanation
Indices: 37539725--37539820 Score: 88
Period size: 29 Copynumber: 3.1 Consensus size: 30
37539715 ACTATTATAA
* *
37539725 ATATGTATATATGTATACTTTATGTATATTA-T
1 ATATGTATATA--TATA-TTTTTATATATTATT
* * * *
37539757 ATATATATTTTTATATTTTTATA-AATATT
1 ATATGTATATATATATTTTTATATATTATT
37539786 ATATGTATATATATATTTTTATATATTATGT
1 ATATGTATATATATATTTTTATATATTAT-T
37539817 ATAT
1 ATAT
37539821 TGTGTACATA
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
28 3 0.06
29 27 0.53
30 8 0.16
31 5 0.10
32 8 0.16
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.57
Consensus pattern (30 bp):
ATATGTATATATATATTTTTATATATTATT
Found at i:37540372 original size:21 final size:21
Alignment explanation
Indices: 37540348--37540389 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
37540338 ATCGTTTTCG
*
37540348 TTATCATTGTCAT-TTTTATTT
1 TTAT-ATTGCCATGTTTTATTT
*
37540369 TTATTTTGCCATGTTTTATTT
1 TTATATTGCCATGTTTTATTT
37540390 ATTTTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.67
Consensus pattern (21 bp):
TTATATTGCCATGTTTTATTT
Found at i:37547782 original size:38 final size:39
Alignment explanation
Indices: 37547740--37547902 Score: 170
Period size: 39 Copynumber: 4.2 Consensus size: 39
37547730 GATTTTAACA
* *
37547740 GGGCTAAGACCCGCAGGCCTT-GTG-TGAG-ATTTATATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCTG-GTA-TTATATCC
* *
37547778 GGGCTAAGGCCCGAAGGCATTCGTGCTGGTATTATATTC
1 GGGCTAAGACCCGAAGGCATTCGTGCTGGTATTATATCC
* * * * *
37547817 GGGCTAAGTCCCGAAGGCAATCGTGCTGATGTTATATCT
1 GGGCTAAGACCCGAAGGCATTCGTGCTGGTATTATATCC
* * * *
37547856 GGGCTAAGTCCCGAAGGCATTCGAGCTGATGTTATATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCTGGTATTATATCC
37547895 GGGCTAAG
1 GGGCTAAG
37547903 TTCCGAATGC
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
38 18 0.17
39 88 0.81
40 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.26
Consensus pattern (39 bp):
GGGCTAAGACCCGAAGGCATTCGTGCTGGTATTATATCC
Found at i:37547820 original size:39 final size:39
Alignment explanation
Indices: 37547770--37547915 Score: 211
Period size: 39 Copynumber: 3.7 Consensus size: 39
37547760 TGTGTGAGAT
* * *
37547770 TTATATCCGGGCTAAGGCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
* *
37547809 TTATATTCGGGCTAAGTCCCGAAGGCAATCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
* *
37547848 TTATATCTGGGCTAAGTCCCGAAGGCATTCGAGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
* *
37547887 TTATATCCGGGCTAAGTTCCGAATGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
37547916 TGGGTTGGTA
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 95 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
Found at i:37555875 original size:39 final size:39
Alignment explanation
Indices: 37555773--37555947 Score: 232
Period size: 39 Copynumber: 4.6 Consensus size: 39
37555763 AGGATTTTAA
* * * *
37555773 CGGGCTAAGACCCGTAGGCCTT-GTG-TGAGATTTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATATC
*
37555811 CGGGCTAAGT--CGAAGGCATTCGTGCTGGTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATC
37555848 CGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATC
* * *
37555887 TGGGCTAAGTCCCAAAGGCATTCGTGCTGATGTTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATC
*
37555926 CGGGCTAAGTTCCGAAGGCATT
1 CGGGCTAAGTCCCGAAGGCATT
37555948 TGGGTTGGAA
Statistics
Matches: 121, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
36 8 0.07
37 20 0.17
38 12 0.10
39 81 0.67
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATC
Found at i:37557059 original size:55 final size:54
Alignment explanation
Indices: 37556975--37557163 Score: 199
Period size: 53 Copynumber: 3.5 Consensus size: 54
37556965 TAGGGGTGTT
*
37556975 ACATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATATCATGTAAGACCATGTCAAG
1 ACATGG-AATTGATAA-GTTTCATAAGGCAAGGATATCATGTAAGACCATGTCAAG
*
37557030 ACATGGAATTGATAAGTTTCTATAAGGCAAAGG-T-TCTATGTAAGACCATGCCAAG
1 ACATGGAATTGATAAGTTTC-ATAAGGC-AAGGATATC-ATGTAAGACCATGTCAAG
* * * * *
37557085 GCATGGCATT-AGTGAG-TTCATAAGGCAAGGATACCATGTAAGACCATGTCGAG
1 ACATGGAATTGA-TAAGTTTCATAAGGCAAGGATATCATGTAAGACCATGTCAAG
* * *
37557138 ACATGGCATTGGTAAGTTTCAAAAGG
1 ACATGGAATTGATAAGTTTCATAAGG
37557164 ATACCACATA
Statistics
Matches: 113, Mismatches: 12, Indels: 19
0.78 0.08 0.13
Matches are distributed among these distances:
52 4 0.04
53 41 0.36
54 23 0.20
55 41 0.36
56 4 0.04
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (54 bp):
ACATGGAATTGATAAGTTTCATAAGGCAAGGATATCATGTAAGACCATGTCAAG
Found at i:37559724 original size:27 final size:27
Alignment explanation
Indices: 37559708--37559836 Score: 145
Period size: 27 Copynumber: 4.8 Consensus size: 27
37559698 TGCCCTCCAG
37559708 GGGTATTTCGGTAATTTTACACTACAA
1 GGGTATTTCGGTAATTTTACACTACAA
* *
37559735 GGGTATATT-AGTAATTTTACACTAAAA
1 GGGTAT-TTCGGTAATTTTACACTACAA
*
37559762 GGGTATTTCGGTAATTTTACCCTACAA
1 GGGTATTTCGGTAATTTTACACTACAA
* * ***
37559789 GGTTATTTCGATAATTTTACAACTGGGA
1 GGGTATTTCGGTAATTTTAC-ACTACAA
*
37559817 -GGTATTTCGATAATTTTACA
1 GGGTATTTCGGTAATTTTACA
37559837 AATCAGGTAC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
26 3 0.03
27 79 0.91
28 5 0.06
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACACTACAA
Found at i:37559804 original size:54 final size:55
Alignment explanation
Indices: 37559708--37559836 Score: 165
Period size: 54 Copynumber: 2.4 Consensus size: 55
37559698 TGCCCTCCAG
37559708 GGGTATTTCGGTAATTTTACACTACAAGGGTATATTAGTAATTTTAC-ACTAAAA
1 GGGTATTTCGGTAATTTTACACTACAAGGGTATATTAGTAATTTTACAACTAAAA
* * * ***
37559762 GGGTATTTCGGTAATTTTACCCTACAAGGTTAT-TTCGATAATTTTACAACTGGGA
1 GGGTATTTCGGTAATTTTACACTACAAGGGTATATTAG-TAATTTTACAACTAAAA
*
37559817 -GGTATTTCGATAATTTTACA
1 GGGTATTTCGGTAATTTTACA
37559837 AATCAGGTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
53 3 0.05
54 58 0.89
55 4 0.06
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (55 bp):
GGGTATTTCGGTAATTTTACACTACAAGGGTATATTAGTAATTTTACAACTAAAA
Found at i:37559874 original size:27 final size:27
Alignment explanation
Indices: 37559844--37559931 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
37559834 ACAAATCAGG
37559844 TACAAACTGGGGGTATTTCGATAATTT
1 TACAAACTGGGGGTATTTCGATAATTT
** *
37559871 TACAAA-TCAAGGGTATTTAGATAATTT
1 TACAAACT-GGGGGTATTTCGATAATTT
*
37559898 TACAAACCGGGGGTATTTC-AGTAATTT
1 TACAAACTGGGGGTATTTCGA-TAATTT
37559925 TACAAAC
1 TACAAAC
37559932 ATAGGTCTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 2 0.04
27 49 0.96
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.34
Consensus pattern (27 bp):
TACAAACTGGGGGTATTTCGATAATTT
Found at i:37559923 original size:92 final size:92
Alignment explanation
Indices: 37559762--37559930 Score: 236
Period size: 92 Copynumber: 1.8 Consensus size: 92
37559752 TACACTAAAA
* ** * * *
37559762 GGGTATTTCGGTAATTTTACCCTACAAGGTTATTTCGATAATTTTACAACTGGGAGGTATTTCGA
1 GGGTATTTCGATAATTTTACAATACAAGGGTATTTAGATAATTTTACAACCGGGAGGTATTTCGA
37559827 TAATTTTACAAATCAGGTACAAACTGG
66 TAATTTTACAAATCAGGTACAAACTGG
37559854 GGGTATTTCGATAATTTTACAA-ATCAAGGGTATTTAGATAATTTTACAAACCGGG-GGTATTTC
1 GGGTATTTCGATAATTTTACAATA-CAAGGGTATTTAGATAATTTTAC-AACCGGGAGGTATTTC
37559917 -AGTAATTTTACAAA
64 GA-TAATTTTACAAA
37559931 CATAGGTCTT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
91 2 0.03
92 60 0.88
93 6 0.09
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (92 bp):
GGGTATTTCGATAATTTTACAATACAAGGGTATTTAGATAATTTTACAACCGGGAGGTATTTCGA
TAATTTTACAAATCAGGTACAAACTGG
Found at i:37581638 original size:23 final size:24
Alignment explanation
Indices: 37581604--37581648 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
37581594 TAGATAAATT
*
37581604 TATTGTTGTATTT-ATTGATGATA
1 TATTGTTGTATTTGAATGATGATA
37581627 TATTGATT-TATTTGAATGATGA
1 TATTG-TTGTATTTGAATGATGA
37581649 ATCCGAGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (24 bp):
TATTGTTGTATTTGAATGATGATA
Found at i:37588547 original size:27 final size:27
Alignment explanation
Indices: 37588486--37588596 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
37588476 AGCATGGCTG
* * * *
37588486 CCAGAACAGATAA-TCTGACAGGGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
37588512 CCACAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
37588539 CCAGAACAGAT-ATATGTGCCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
37588566 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
37588593 CCAG
1 CCAG
37588597 GCGCTTCCTC
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.19
27 56 0.78
28 2 0.03
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:37588578 original size:54 final size:53
Alignment explanation
Indices: 37588486--37588596 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
37588476 AGCATGGCTG
* *
37588486 CCAGAACAGATAATCTGACAGGGTCACCACAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATCTGACAGAGCCACCACAACAGATAATTGTGGCAGAGCCA
* * * * *
37588539 CCAGAACAGATATATGTGCCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATCTGACAGAGCCACCACAACAGATAATTGTGGCAGAGCCA
37588593 CCAG
1 CCAG
37588597 GCGCTTCCTC
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (53 bp):
CCAGAACAGATAATCTGACAGAGCCACCACAACAGATAATTGTGGCAGAGCCA
Found at i:37588744 original size:26 final size:26
Alignment explanation
Indices: 37588714--37588773 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
37588704 GGGTATAATG
*
37588714 GTAATTTTGC-ACCTAGGGGTATATCAA
1 GTAATTTT-CAACATAGGGGTAT-TCAA
37588741 -TAATTTTCATACATAGGGGTATTCAA
1 GTAATTTTCA-ACATAGGGGTATTCAA
37588767 GTAATTT
1 GTAATTT
37588774 CACTATTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
25 1 0.03
26 11 0.38
27 17 0.59
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (26 bp):
GTAATTTTCAACATAGGGGTATTCAA
Found at i:37592612 original size:79 final size:79
Alignment explanation
Indices: 37592410--37592618 Score: 278
Period size: 80 Copynumber: 2.6 Consensus size: 79
37592400 TAATGATTAT
37592410 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCAGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC-GGCTAAGACCCGAAGGCATT
* *** *
37592475 CGTGCGAGTTGTTAT
65 CGTGCAAGTTACCAA
37592490 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCG-AGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC-GGCTAAGACCCGAAGGCATT
*
37592554 TGTGCAAGTTACCAA
65 CGTGCAAGTTACCAA
* ** * *
37592569 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTGTATCCGGCTAA
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGCTAA
37592619 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
78 6 0.05
79 51 0.44
80 59 0.51
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGCTAAGACCCGAAGGCATTC
GTGCAAGTTACCAA
Found at i:37592614 original size:40 final size:40
Alignment explanation
Indices: 37592366--37592591 Score: 303
Period size: 40 Copynumber: 5.7 Consensus size: 40
37592356 AGCATTTGAA
* * ** * *
37592366 TTATACCCGGGCTAAGTCCCGAAGGCATTTATGCTA-ATG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37592405 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 -TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
37592446 TTATATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37592486 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * *
37592526 TTATATCCGGGCTAAGACCCG-AGGCATTTGTGCAAGTTA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
** * *
37592565 CCAAATCCGGGTTAAGACCCGAAGGCA
1 TTATATCCGGGCTAAGACCCGAAGGCA
37592592 ATTGTGCTTG
Statistics
Matches: 169, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 32 0.19
40 135 0.80
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:37599952 original size:40 final size:39
Alignment explanation
Indices: 37599890--37600071 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 39
37599880 GACTCGCTCA
* ** *
37599890 AATGCCTTTGGGACGAAGCCCGGTTATAGTGACTTGCACG
1 AATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTTGCACG
* *
37599930 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCACA
1 AATGCCTTCGGGACTTAGCCC-GGTTTAGTAACTTGCACG
* * * *
37599970 AATGCCTTCGGG-CTTAGCTCGAATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCG-GTTTAGTAACTTGCACG
* * * *
37600009 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAACTT-GCACG
*
37600049 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
37600072 ACATCATTCG
Statistics
Matches: 112, Mismatches: 23, Indels: 14
0.75 0.15 0.09
Matches are distributed among these distances:
38 3 0.03
39 28 0.25
40 70 0.62
41 11 0.10
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGTTTAGTAACTTGCACG
Found at i:37600013 original size:39 final size:40
Alignment explanation
Indices: 37599916--37600019 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 40
37599906 AGCCCGGTTA
* * **
37599916 TAGTGACTTGCACGAATGCCTTCGGGACTTAACCCGGGTT
1 TAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGAATT
* * * *
37599956 TAGTAACTTGCACAAATGCCTTCGGG-CTTAGCTCGAATT
1 TAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGAATT
*
37599995 TATTAACTCGCACGAATGCCTTCGG
1 TAGTAACTCGCACGAATGCCTTCGG
37600020 ATCCTAGTCC
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
39 31 0.56
40 24 0.44
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (40 bp):
TAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGAATT
Found at i:37603951 original size:40 final size:40
Alignment explanation
Indices: 37603897--37604080 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
37603887 AGCATTTGAA
* * ** * *
37603897 TTATACCCGGGCTAAGTCCCGAAGGCATTTATGCTA-ATG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37603936 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 -TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* *
37603977 TTATATCCGAGCTAAGACCCGAAGGCATTCGTGGGAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * *
37604017 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
** * *
37604057 CCAAATCCGGGTTAAGACCCGAAG
1 TTATATCCGGGCTAAGACCCGAAG
37604081 ACAATTGTGC
Statistics
Matches: 126, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
40 124 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:37604104 original size:80 final size:80
Alignment explanation
Indices: 37603937--37604110 Score: 199
Period size: 80 Copynumber: 2.2 Consensus size: 80
37603927 ATGCTAATGA
* *** * *
37603937 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGAGCTAAGACCCGAAGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTACCAAATCCGAGCTAAGACCCGAAGA
* *
37604002 CATTCGTGGGAGTTG
66 CATTCGTGCGAGTGG
* * *
37604017 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTACCAAATCCGAGCTAAGACCCGAAGA
**
37604082 CAATT-GTGCTTGTGG
66 C-ATTCGTGCGAGTGG
*
37604097 TTGTATCC-GGCTAA
1 TTATATCCGGGCTAA
37604111 ATTCCAAAGA
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.89
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTACCAAATCCGAGCTAAGACCCGAAGA
CATTCGTGCGAGTGG
Found at i:37610742 original size:40 final size:40
Alignment explanation
Indices: 37610646--37610798 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
37610636 CGAATGGTAT
* * * * *
37610646 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAA
* * *
37610687 CCGGGTTAATTCCCGAAGGCATTTGTGCGATTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAA
** *
37610727 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TGACCAAAA
* * * *
37610767 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
37610799 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 67 0.71
41 26 0.28
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAA
Found at i:37614182 original size:29 final size:29
Alignment explanation
Indices: 37614150--37614226 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
37614140 GCTGGAAATA
* *
37614150 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
* * * *
37614179 TATGGCACTATGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
37614208 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
37614227 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:37621571 original size:22 final size:23
Alignment explanation
Indices: 37621543--37621588 Score: 85
Period size: 22 Copynumber: 2.0 Consensus size: 23
37621533 CTAAGTGTGC
37621543 ATGCTGGAAATA-TATGGCACTA
1 ATGCTGGAAATATTATGGCACTA
37621565 ATGCTGGAAATATTATGGCACTA
1 ATGCTGGAAATATTATGGCACTA
37621588 A
1 A
37621589 GTGTGCATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (23 bp):
ATGCTGGAAATATTATGGCACTA
Found at i:37621619 original size:29 final size:30
Alignment explanation
Indices: 37621565--37621623 Score: 111
Period size: 29 Copynumber: 2.0 Consensus size: 30
37621555 TATGGCACTA
37621565 ATGCTGGAAATATTATGGCACTAAGTGTGC
1 ATGCTGGAAATATTATGGCACTAAGTGTGC
37621595 ATGCTGGAAATA-TATGGCACTAAGTGTGC
1 ATGCTGGAAATATTATGGCACTAAGTGTGC
37621624 GAGCTCGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
ATGCTGGAAATATTATGGCACTAAGTGTGC
Found at i:37621639 original size:29 final size:29
Alignment explanation
Indices: 37621578--37621683 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 29
37621568 CTGGAAATAT
* **
37621578 TATGGCACTAAGTGTGC-ATGCTGGAAATA
1 TATGGCACTAAGTGTGCGA-GCTCGAAACG
**
37621607 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCGAAACG
* * *
37621636 TATGGCACTATGTGTGCGGGCT-TAAATCG
1 TATGGCACTAAGTGTGCGAGCTCGAAA-CG
*
37621665 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
37621684 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.95
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCGAAACG
Found at i:37625510 original size:39 final size:40
Alignment explanation
Indices: 37625323--37625541 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
37625313 TATTCGAATG
37625323 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37625363 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37625403 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37625442 ATATCCGGGC-AAGTCCCGAAGGCATTTGTGCTA-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
37625480 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
37625520 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37625542 TACTTGGGTT
Statistics
Matches: 172, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
38 38 0.22
39 50 0.29
40 82 0.48
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37627383 original size:46 final size:45
Alignment explanation
Indices: 37627229--37627388 Score: 148
Period size: 46 Copynumber: 3.5 Consensus size: 45
37627219 CTTACCTATT
* * * * *
37627229 ACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGGACATTCACATCCAT-AGTGAACTCGG
* *
37627275 ACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTCAG
1 ACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCAT-AGTGAACTCGG
*
37627322 ACTCAACTCACCGAGTTCGGACATTCACATCCATAGGTGAACTCGG
1 ACTCAACTCAACGAGTTCGGACATTCACATCCATA-GTGAACTCGG
37627368 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGTTCGGA
37627389 TGCTCAACCA
Statistics
Matches: 92, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 1 0.01
46 45 0.49
47 27 0.29
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
ACTCAACTCAACGAGTTCGGACATTCACATCCATAGTGAACTCGG
Found at i:37627845 original size:30 final size:30
Alignment explanation
Indices: 37627811--37627870 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37627801 ATTTAATACG
37627811 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37627841 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37627871 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37630396 original size:39 final size:40
Alignment explanation
Indices: 37630326--37630545 Score: 367
Period size: 39 Copynumber: 5.6 Consensus size: 40
37630316 TATTCGAATG
37630326 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37630366 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37630405 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
37630445 ATATCCGGGC-AAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
37630484 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
37630524 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37630546 TACTTGGGTT
Statistics
Matches: 171, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
39 91 0.53
40 78 0.46
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37630464 original size:79 final size:80
Alignment explanation
Indices: 37630326--37630545 Score: 367
Period size: 79 Copynumber: 2.8 Consensus size: 80
37630316 TATTCGAATG
37630326 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGT-CCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
37630390 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
37630405 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC-AAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
37630469 TTTGTGCTATTGACT
66 TTTGTGCTAGTGACT
* * *
37630484 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
37630546 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
78 7 0.05
79 125 0.93
80 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:37638427 original size:40 final size:40
Alignment explanation
Indices: 37638372--37638593 Score: 351
Period size: 40 Copynumber: 5.6 Consensus size: 40
37638362 TATTCGAATG
37638372 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
37638412 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
37638452 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
37638492 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
37638532 ATATCCGGGCTAA-TACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGT-CCCGAAGGCATTTGTGCTAG-TGACT
*
37638572 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37638594 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 15 0.09
40 153 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37641697 original size:37 final size:37
Alignment explanation
Indices: 37641645--37641794 Score: 239
Period size: 37 Copynumber: 4.1 Consensus size: 37
37641635 CTTTAGCTCA
* *
37641645 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
37641682 GACAAAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
37641719 GACATAATC-CTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTC-CACACGTAGTCATCGGGTCTTACCCG
*
37641756 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
37641793 GA
1 GA
37641795 ATATATTTCC
Statistics
Matches: 106, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
37 105 0.99
38 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:37642060 original size:47 final size:47
Alignment explanation
Indices: 37641999--37642154 Score: 267
Period size: 47 Copynumber: 3.3 Consensus size: 47
37641989 TATATATATT
* ** * *
37641999 TCACATTAGCCATTCGGTTTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
37642046 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
37642093 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
37642140 TCACATTGGCCATTC
1 TCACATTGGCCATTC
37642155 ATCACATTGG
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 104 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:37642153 original size:16 final size:16
Alignment explanation
Indices: 37642134--37642170 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
37642124 TGCATGCTCA
37642134 CATTCATCACATTGGC
1 CATTCATCACATTGGC
37642150 CATTCATCACATTGGC
1 CATTCATCACATTGGC
37642166 CATTC
1 CATTC
37642171 GGCCTTATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.32, G:0.11, T:0.32
Consensus pattern (16 bp):
CATTCATCACATTGGC
Found at i:37642167 original size:63 final size:63
Alignment explanation
Indices: 37642087--37642217 Score: 253
Period size: 63 Copynumber: 2.1 Consensus size: 63
37642077 TGCATGCTCA
37642087 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
1 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
*
37642150 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
1 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
37642213 CATTC
1 CATTC
37642218 GGCCTTATCA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (63 bp):
CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGC
Found at i:37642182 original size:47 final size:47
Alignment explanation
Indices: 37642150--37642255 Score: 153
Period size: 47 Copynumber: 2.3 Consensus size: 47
37642140 TCACATTGGC
* *
37642150 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCA
1 CATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTGCA
*
37642197 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCGCAT-T-CA
1 CATTCATCACATTGGCCATTCGGCCTTATCACATATAT--ACATGTGCA
37642244 CATTCATCACAT
1 CATTCATCACAT
37642256 AAAATCCTAA
Statistics
Matches: 57, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
47 52 0.91
48 1 0.02
49 4 0.07
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTGCA
Found at i:37642214 original size:110 final size:109
Alignment explanation
Indices: 37642041--37642255 Score: 387
Period size: 110 Copynumber: 2.0 Consensus size: 109
37642031 GCATGTTCAT
37642041 ATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCAT
1 ATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCAT
37642106 TCGGCCTTATCACATATATGCATGC-TCACATTCATCACATTGGCC
66 TCGGCCTTATCACATATATGC--GCATCACATTCATCACATTGGCC
*
37642151 ATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCAT
1 ATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCAT
37642216 TCGGCCTTATCACATATATGCGCATTCACATTCATCACAT
66 TCGGCCTTATCACATATATGCGCA-TCACATTCATCACAT
37642256 AAAATCCTAA
Statistics
Matches: 102, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
108 2 0.02
110 100 0.98
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (109 bp):
ATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCAT
TCGGCCTTATCACATATATGCGCATCACATTCATCACATTGGCC
Found at i:37642252 original size:25 final size:24
Alignment explanation
Indices: 37642177--37642256 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 24
37642167 ATTCGGCCTT
37642177 ATCACATATATG-CATGTTCACATTC
1 ATCACATATATGCCA--TTCACATTC
* * *
37642202 ATCACAT-T-GGCCATTCGGCCTT-
1 ATCACATATATGCCATTC-ACATTC
37642224 ATCACATATATGCGCATTCACATTC
1 ATCACATATATGC-CATTCACATTC
37642249 ATCACATA
1 ATCACATA
37642257 AAATCCTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
22 10 0.23
23 5 0.12
24 8 0.19
25 20 0.47
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.33
Consensus pattern (24 bp):
ATCACATATATGCCATTCACATTC
Found at i:37652382 original size:13 final size:13
Alignment explanation
Indices: 37652364--37652388 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37652354 GAATTAGTAT
37652364 GTGTGAAAATTTC
1 GTGTGAAAATTTC
37652377 GTGTGAAAATTT
1 GTGTGAAAATTT
37652389 AATCGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:37653530 original size:42 final size:42
Alignment explanation
Indices: 37653456--37653582 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 42
37653446 ACATAGGATC
* *
37653456 CGATATGTGTTTTCGTGTAAGACCAC-GTCTGGGACGTTGGCAT
1 CGATATTTG-TTTCATGTAAGACC-CTGTCTGGGACGTTGGCAT
** *
37653499 CG-TATTTGATTTCATGTAAGACCCTGTCTGGGACAATGGAAT
1 CGATATTTG-TTTCATGTAAGACCCTGTCTGGGACGTTGGCAT
* * *
37653541 TGATATTTGTTTACATGTAAGACCATGTCTAGGACGTTGGCA
1 CGATATTTGTTT-CATGTAAGACCCTGTCTGGGACGTTGGCA
37653583 CTGTATGAGC
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 36 0.52
43 32 0.46
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (42 bp):
CGATATTTGTTTCATGTAAGACCCTGTCTGGGACGTTGGCAT
Found at i:37656170 original size:40 final size:39
Alignment explanation
Indices: 37656125--37656254 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
37656115 CGGAATATAA
37656125 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
37656165 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37656205 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
37656245 CCGGATATAA
1 CCGGATATAA
37656255 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37656269 original size:40 final size:40
Alignment explanation
Indices: 37656141--37656292 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
37656131 ATAACCATGT
* * *
37656141 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
37656181 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37656221 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37656261 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
37656293 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:37656275 original size:80 final size:80
Alignment explanation
Indices: 37656141--37656290 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
37656131 ATAACCATGT
*
37656141 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
37656205 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
37656221 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
37656284 CCCGGAT
64 CCCGGAT
37656291 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:37664110 original size:40 final size:39
Alignment explanation
Indices: 37664065--37664194 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
37664055 CGGAATATAA
37664065 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
37664105 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37664145 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
37664185 CCGGATATAA
1 CCGGATATAA
37664195 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37664209 original size:40 final size:40
Alignment explanation
Indices: 37664081--37664232 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
37664071 ATAACCATGT
* * *
37664081 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
37664121 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37664161 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37664201 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
37664233 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:37664215 original size:80 final size:80
Alignment explanation
Indices: 37664081--37664230 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
37664071 ATAACCATGT
*
37664081 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
37664145 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
37664161 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
37664224 CCCGGAT
64 CCCGGAT
37664231 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:37667136 original size:40 final size:39
Alignment explanation
Indices: 37667091--37667220 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
37667081 CGGAATATAA
37667091 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
37667131 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37667171 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
37667211 CCGGATATAA
1 CCGGATATAA
37667221 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37667235 original size:40 final size:40
Alignment explanation
Indices: 37667107--37667258 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
37667097 ATAACCATGT
* * *
37667107 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
37667147 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37667187 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37667227 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
37667259 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:37667241 original size:80 final size:80
Alignment explanation
Indices: 37667107--37667256 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
37667097 ATAACCATGT
*
37667107 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
37667171 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
37667187 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
37667250 CCCGGAT
64 CCCGGAT
37667257 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:37675073 original size:40 final size:39
Alignment explanation
Indices: 37675028--37675157 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
37675018 CGGAATATAA
37675028 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
37675068 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37675108 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
37675148 CCGGATATAA
1 CCGGATATAA
37675158 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37675172 original size:40 final size:40
Alignment explanation
Indices: 37675044--37675195 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
37675034 ATAACCATGT
* * *
37675044 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
37675084 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37675124 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
37675164 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
37675196 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:37675178 original size:80 final size:80
Alignment explanation
Indices: 37675044--37675193 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
37675034 ATAACCATGT
*
37675044 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
37675108 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
37675124 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
37675187 CCCGGAT
64 CCCGGAT
37675194 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:37680556 original size:42 final size:43
Alignment explanation
Indices: 37680445--37680612 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 43
37680435 CATAAGCTCT
* * *
37680445 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACCTA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCA-CTA
* * * * *
37680488 T-CGATGCTACTATCCCAAACAGGGTCTTACACG-AATCGA-TA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATC-ACTA
* *
37680529 TACAATGCCAATATCCCAGACATGGTCTTACACATAATCACAA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACTA
* * * * * * *
37680572 TTCAATGCTAGTGTCCTAGACATAGTCTTACATGTAATCAC
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCAC
37680613 AATTCGATAA
Statistics
Matches: 97, Mismatches: 23, Indels: 10
0.75 0.18 0.08
Matches are distributed among these distances:
41 3 0.03
42 35 0.36
43 59 0.61
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (43 bp):
TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCACTA
Found at i:37685947 original size:40 final size:40
Alignment explanation
Indices: 37685885--37686100 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
37685875 AAACCAAGTA
* * * *
37685885 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
37685924 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37685964 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37686004 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37686044 CCTTCGGGACTTAGCCCGAAT-TAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37686082 CCTTC-GGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
37686101 ATTAGTCACT
Statistics
Matches: 165, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
37 13 0.08
38 9 0.05
39 26 0.16
40 117 0.71
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37693953 original size:40 final size:40
Alignment explanation
Indices: 37693870--37694124 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
37693860 AAACCAAGTA
* * *
37693870 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
37693908 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37693948 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37693988 CCTTCGGGACTTAGCCCGGATATAGTAACTCG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37694027 CCTTC-GGACTTAGCCCGGA-ATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* *
37694066 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
37694106 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37694125 TTATCATCCG
Statistics
Matches: 199, Mismatches: 10, Indels: 14
0.89 0.04 0.06
Matches are distributed among these distances:
37 1 0.01
38 38 0.19
39 37 0.19
40 122 0.61
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37694078 original size:118 final size:119
Alignment explanation
Indices: 37693870--37694124 Score: 344
Period size: 118 Copynumber: 2.2 Consensus size: 119
37693860 AAACCAAGTA
* * *
37693870 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCTAAATGCCTTCGGGACTTAGCCCGGATATAGT
** * *
37693934 AGTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGTACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATG
37693988 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGAC-AAATGCCTTC-GGACTTAGCCCGGA-ATT
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCG-CTAAATGCCTTCGGGACTTAGCCCGGATA-T
*
37694049 AGTAACTCGCA-ACAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
63 AGTAACTCGCACA-AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATG
37694106 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37694125 TTATCATCCG
Statistics
Matches: 123, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
117 2 0.02
118 94 0.76
119 26 0.21
120 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCTAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATG
Found at i:37698019 original size:56 final size:56
Alignment explanation
Indices: 37697933--37698066 Score: 223
Period size: 56 Copynumber: 2.4 Consensus size: 56
37697923 CATGGCATCA
* *
37697933 ATATATGTGTGCGAGTAAGGCCACATTTTATACATTGGCATCGATATGTGACTCCG
1 ATATATGTGTGCGAGTAAGACCACATTTTATACATTGGCATCGATATGCGACTCCG
* * *
37697989 ATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGCGACTCTG
1 ATATATGTGTGCGAGTAAGACCACATTTTATACATTGGCATCGATATGCGACTCCG
37698045 ATATATGTGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
37698067 CTATCTAGGA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACATTTTATACATTGGCATCGATATGCGACTCCG
Found at i:37705377 original size:27 final size:27
Alignment explanation
Indices: 37705320--37705377 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
37705310 ACCCTTTAAT
** **
37705320 TGATAAAATGACTGTTATGTCTTTATA
1 TGATAAAATGACTGTTATACCCCTATA
* *
37705347 TGATAAAATGACTGTTTTACCCCTATG
1 TGATAAAATGACTGTTATACCCCTATA
37705374 TGAT
1 TGAT
37705378 GTATGATTGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (27 bp):
TGATAAAATGACTGTTATACCCCTATA
Found at i:37709560 original size:29 final size:29
Alignment explanation
Indices: 37709527--37709657 Score: 226
Period size: 29 Copynumber: 4.5 Consensus size: 29
37709517 GTGACGAGAT
*
37709527 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
37709556 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
37709585 TGGCACTGAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
37709614 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
37709643 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37709658 GGGCTCGAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:37709673 original size:29 final size:29
Alignment explanation
Indices: 37709641--37709716 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
37709631 GCTGGAAATA
* *
37709641 TATGGCACTAAGTGTGCGGGCTCGAAGGG
1 TATGGCACTAAGTGTGCGGGCTCAAAGCG
** * *
37709670 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGGGCTCAAAGCG
*
37709699 CATGGCACTAAGTGTGCG
1 TATGGCACTAAGTGTGCG
37709717 AAATCGAGTA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.20, C:0.18, G:0.37, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGGGCTCAAAGCG
Found at i:37709674 original size:87 final size:87
Alignment explanation
Indices: 37709527--37709686 Score: 248
Period size: 87 Copynumber: 1.8 Consensus size: 87
37709517 GTGACGAGAT
* *
37709527 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
37709592 GAGTGTGCATGCTGGAAAAATA
66 GAGTGTGCATGCTGGAAAAATA
* * ***
37709614 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGGGCTCGAAGGGTATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
*
37709679 GTGTGTGC
66 GAGTGTGC
37709687 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 65 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
GAGTGTGCATGCTGGAAAAATA
Found at i:37709704 original size:87 final size:87
Alignment explanation
Indices: 37709527--37709715 Score: 236
Period size: 87 Copynumber: 2.2 Consensus size: 87
37709517 GTGACGAGAT
* *
37709527 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
* *
37709592 GAGTGTGCATGCTGGAAAAATA
66 GAGTGTGCAGGCTGGAAAAACA
* * ***
37709614 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGGGCTCGAAGGGTATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
* * * **
37709679 GTGTGTGCGGGCT-TAAATCGCA
66 GAGTGTGCAGGCTGGAAA-AACA
37709701 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37709716 GAAATCGAGT
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
86 3 0.03
87 83 0.97
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.25
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
GAGTGTGCAGGCTGGAAAAACA
Found at i:37709757 original size:2 final size:2
Alignment explanation
Indices: 37709750--37709782 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
37709740 GTGCATACTC
37709750 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37709783 CTCCGATCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37717419 original size:29 final size:29
Alignment explanation
Indices: 37717386--37717516 Score: 217
Period size: 29 Copynumber: 4.5 Consensus size: 29
37717376 GTGACGAGAT
*
37717386 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
37717415 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
37717444 TGGCACTGAGTGTGCATGCTGAAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
37717473 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
37717502 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37717517 GGGCTCGAAG
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:37717532 original size:29 final size:29
Alignment explanation
Indices: 37717500--37717574 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
37717490 GCTGGAAATA
* *
37717500 TATGGCACTAAGTGTGCGGGCTCGAAGGG
1 TATGGCACTAAGTGTGCGGGCTCAAAGCG
** * *
37717529 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGGGCTCAAAGCG
*
37717558 CATGGCACTAAGTGTGC
1 TATGGCACTAAGTGTGC
37717575 AAAATCGAGT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.20, C:0.19, G:0.36, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGGGCTCAAAGCG
Found at i:37717533 original size:87 final size:87
Alignment explanation
Indices: 37717386--37717545 Score: 248
Period size: 87 Copynumber: 1.8 Consensus size: 87
37717376 GTGACGAGAT
* *
37717386 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
37717451 GAGTGTGCATGCTGAAAAAATA
66 GAGTGTGCATGCTGAAAAAATA
* * ***
37717473 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGGGCTCGAAGGGTATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
*
37717538 GTGTGTGC
66 GAGTGTGC
37717546 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 65 1.00
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
GAGTGTGCATGCTGAAAAAATA
Found at i:37717563 original size:87 final size:87
Alignment explanation
Indices: 37717386--37717575 Score: 245
Period size: 87 Copynumber: 2.2 Consensus size: 87
37717376 GTGACGAGAT
* *
37717386 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
* *
37717451 GAGTGTGCATGCTGAAAAAATA
66 GAGTGTGCAGGCTGAAAAAACA
* * ***
37717473 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGGGCTCGAAGGGTATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
* * * ***
37717538 GTGTGTGCGGGCTTAAATCGCA
66 GAGTGTGCAGGCTGAAAAAACA
37717560 TGGCACTAAGTGTGCA
1 TGGCACTAAGTGTGCA
37717576 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCAGGCTCGAAAAATATGGCACT
GAGTGTGCAGGCTGAAAAAACA
Done.