Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 138 of 345
Found at i:37718676 original size:17 final size:18
Alignment explanation
Indices: 37718654--37718693 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
37718644 TACTATAGAC
37718654 ATTAAAG-TAATAATAAA
1 ATTAAAGTTAATAATAAA
*
37718671 ATTAAAGTTAGTAATAAA
1 ATTAAAGTTAATAATAAA
37718689 ATTAA
1 ATTAA
37718694 CATTTATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (18 bp):
ATTAAAGTTAATAATAAA
Found at i:37734866 original size:28 final size:27
Alignment explanation
Indices: 37734825--37734974 Score: 165
Period size: 28 Copynumber: 5.3 Consensus size: 27
37734815 AAGTCTACAT
* * *
37734825 ACATGCATATGGCCCACTAGACCCAATC
1 ACATTCATATGGCCCA-TGGCCCCAATC
* * ** *
37734853 TCATTCATAGGGCCCATTAGGCCTAAATT
1 ACATTCATATGGCCCA-T-GGCCCCAATC
37734882 ACATTCATATGGCCCATCGGCCCCAATC
1 ACATTCATATGGCCCAT-GGCCCCAATC
37734910 ACATTCATATGGCCCATCGGCCCCAATC
1 ACATTCATATGGCCCAT-GGCCCCAATC
*
37734938 AAATTCATATGGCCCATTGGCCCCAATC
1 ACATTCATATGGCCCA-TGGCCCCAATC
37734966 ACATTCATA
1 ACATTCATA
37734975 GTCATGCAAT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 83 0.81
29 20 0.19
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (27 bp):
ACATTCATATGGCCCATGGCCCCAATC
Found at i:37734962 original size:56 final size:57
Alignment explanation
Indices: 37734830--37734975 Score: 186
Period size: 56 Copynumber: 2.6 Consensus size: 57
37734820 TACATACATG
* * * * * * *
37734830 CATATGGCCCACTAGACCCAATCTCATTCATAGGGCCCATTAGGCCTAAATTACATT
1 CATATGGCCCATTGGCCCCAATCACATTCATAGGGCCCATTAGGCCCAAATCAAATT
* * * *
37734887 CATATGGCCCATCGGCCCCAATCACATTCATATGGCCCA-TCGGCCCCAATCAAATT
1 CATATGGCCCATTGGCCCCAATCACATTCATAGGGCCCATTAGGCCCAAATCAAATT
37734943 CATATGGCCCATTGGCCCCAATCACATTCATAG
1 CATATGGCCCATTGGCCCCAATCACATTCATAG
37734976 TCATGCAATC
Statistics
Matches: 76, Mismatches: 13, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
56 43 0.57
57 33 0.43
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (57 bp):
CATATGGCCCATTGGCCCCAATCACATTCATAGGGCCCATTAGGCCCAAATCAAATT
Found at i:37735218 original size:16 final size:16
Alignment explanation
Indices: 37735194--37735228 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
37735184 ACTTCTGGCT
*
37735194 TTTTGGCTTTTCAGCA
1 TTTTAGCTTTTCAGCA
*
37735210 TTTTAGCTTTTCGGCA
1 TTTTAGCTTTTCAGCA
37735226 TTT
1 TTT
37735229 CGGGAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.54
Consensus pattern (16 bp):
TTTTAGCTTTTCAGCA
Found at i:37738304 original size:36 final size:36
Alignment explanation
Indices: 37738264--37738340 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
37738254 TGATGATTGT
* *
37738264 TGTGAAAG-AGAATATGTGGGTATGTTATTCGTGCCA
1 TGTGAAAGTA-AATATGTGGGTATGATATTCATGCCA
* *
37738300 TGTGACAGTAAATATGTGTGTATGATATTCATGCCA
1 TGTGAAAGTAAATATGTGGGTATGATATTCATGCCA
37738336 TGTGA
1 TGTGA
37738341 TAACAATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 35 0.97
37 1 0.03
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.35
Consensus pattern (36 bp):
TGTGAAAGTAAATATGTGGGTATGATATTCATGCCA
Found at i:37741111 original size:30 final size:30
Alignment explanation
Indices: 37741075--37741136 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
37741065 GACCATATTC
37741075 TAGCCATATCACATAGCATGATATACACAT
1 TAGCCATATCACATAGCATGATATACACAT
*
37741105 TAGCCATATTACATAGCATGATATACACAT
1 TAGCCATATCACATAGCATGATATACACAT
37741135 TA
1 TA
37741137 AAAAACATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (30 bp):
TAGCCATATCACATAGCATGATATACACAT
Found at i:37741134 original size:16 final size:15
Alignment explanation
Indices: 37741080--37741134 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 15
37741070 TATTCTAGCC
37741080 ATATCACATAGCATG
1 ATATCACATAGCATG
37741095 ATATACACATTAGCCAT-
1 ATAT-CACA-TAG-CATG
37741112 AT-T-ACATAGCATG
1 ATATCACATAGCATG
37741125 ATATACACAT
1 ATAT-CACAT
37741135 TAAAAAACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
12 3 0.09
13 5 0.15
14 4 0.12
15 4 0.12
16 9 0.27
17 5 0.15
18 3 0.09
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (15 bp):
ATATCACATAGCATG
Found at i:37742779 original size:2 final size:2
Alignment explanation
Indices: 37742772--37742799 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37742762 CGAATTCATT
37742772 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
37742800 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:37742804 original size:2 final size:2
Alignment explanation
Indices: 37742799--37742840 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
37742789 ACACACACAC
37742799 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37742841 CGTTCTTTGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37743090 original size:39 final size:39
Alignment explanation
Indices: 37743047--37743178 Score: 192
Period size: 39 Copynumber: 3.4 Consensus size: 39
37743037 GGTCTTTAAC
* ** * **
37743047 CCGGATATTTTTCCAGCACGTAGCCTACGGACCTCAAAT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
37743086 CCGGATATATTTCCAACATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
37743125 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
37743164 CCGAATATATTTCCA
1 CCGGATATATTTCCA
37743179 ATCTCATATA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:37744329 original size:2 final size:2
Alignment explanation
Indices: 37744322--37744378 Score: 62
Period size: 2 Copynumber: 29.0 Consensus size: 2
37744312 ACATCAAATC
** * *
37744322 TA TA TA TA TA TA TA TA TA TA TA GC GA -A TA TA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
37744363 TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA
37744379 GCTCATCAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:37751066 original size:39 final size:39
Alignment explanation
Indices: 37751023--37751154 Score: 228
Period size: 39 Copynumber: 3.4 Consensus size: 39
37751013 GGTCTTTAAC
* ** *
37751023 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
37751062 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
37751101 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
37751140 CCGGATATATTTCCA
1 CCGGATATATTTCCA
37751155 ATCTCATATA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:37752303 original size:2 final size:2
Alignment explanation
Indices: 37752296--37752348 Score: 72
Period size: 2 Copynumber: 27.0 Consensus size: 2
37752286 ACATCAAATC
* * *
37752296 TA TA TA TA TA TA TA TA TA TA TA TC GA -A TA TA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37752337 TA TA TA TA TA TA
1 TA TA TA TA TA TA
37752349 GCTCATCAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:37754192 original size:28 final size:27
Alignment explanation
Indices: 37754129--37754198 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
37754119 ATAGTGAGTC
37754129 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
37754156 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
37754184 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37754199 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:37762209 original size:28 final size:27
Alignment explanation
Indices: 37762146--37762215 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
37762136 ATAGTGAGTC
37762146 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
37762173 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
37762201 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37762216 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:37768910 original size:40 final size:40
Alignment explanation
Indices: 37768851--37769037 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
37768841 CATTGGAATG
* * * *
37768851 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
37768891 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
37768931 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
37768971 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
37769011 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
37769038 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:37768953 original size:80 final size:80
Alignment explanation
Indices: 37768851--37769004 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
37768841 CATTGGAATG
* * ** *
37768851 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
37768916 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
37768931 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
37768996 ATCGTGCGA
66 ATCGTGCGA
37769005 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:37769019 original size:80 final size:80
Alignment explanation
Indices: 37768855--37769037 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
37768845 GGAATGATAT
* ** * *
37768855 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
37768920 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
37768935 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
37769000 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
37769015 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
37769038 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:37769057 original size:80 final size:80
Alignment explanation
Indices: 37768855--37769072 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
37768845 GGAATGATAT
* * * * * * * *
37768855 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
37768919 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
37768935 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
37769000 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
37769015 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
37769073 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:37776486 original size:40 final size:40
Alignment explanation
Indices: 37776427--37776613 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
37776417 CATTGGAATG
* * * *
37776427 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
37776467 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
37776507 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
37776547 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
37776587 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
37776614 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:37776529 original size:80 final size:80
Alignment explanation
Indices: 37776427--37776580 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
37776417 CATTGGAATG
* * ** *
37776427 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
37776492 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
37776507 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
37776572 ATCGTGCGA
66 ATCGTGCGA
37776581 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:37776595 original size:80 final size:80
Alignment explanation
Indices: 37776431--37776613 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
37776421 GGAATGATAT
* ** * *
37776431 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
37776496 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
37776511 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
37776576 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
37776591 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
37776614 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:37776633 original size:80 final size:80
Alignment explanation
Indices: 37776431--37776648 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
37776421 GGAATGATAT
* * * * * * * *
37776431 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
37776495 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
37776511 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
37776576 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
37776591 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
37776649 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:37784062 original size:40 final size:40
Alignment explanation
Indices: 37784003--37784189 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
37783993 CATTGGAATG
* * * *
37784003 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
37784043 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
37784083 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
37784123 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
37784163 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
37784190 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:37784105 original size:80 final size:80
Alignment explanation
Indices: 37784003--37784156 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
37783993 CATTGGAATG
* * ** *
37784003 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
37784068 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
37784083 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
37784148 ATCGTGCGA
66 ATCGTGCGA
37784157 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:37784171 original size:80 final size:80
Alignment explanation
Indices: 37784007--37784189 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
37783997 GGAATGATAT
* ** * *
37784007 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
37784072 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
37784087 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
37784152 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
37784167 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
37784190 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:37784209 original size:80 final size:80
Alignment explanation
Indices: 37784007--37784224 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
37783997 GGAATGATAT
* * * * * * * *
37784007 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
37784071 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
37784087 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
37784152 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
37784167 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
37784225 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:37798405 original size:18 final size:18
Alignment explanation
Indices: 37798371--37798404 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37798361 ATCAATATCA
*
37798371 ATTTAACATGATTAAAAT
1 ATTTAACATGATAAAAAT
37798389 ATTTAACA-GATAAAAA
1 ATTTAACATGATAAAAA
37798405 AACTCAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (18 bp):
ATTTAACATGATAAAAAT
Found at i:37803097 original size:14 final size:13
Alignment explanation
Indices: 37803074--37803105 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
37803064 GGGATATCAA
37803074 AACAATAATTAAG
1 AACAATAATTAAG
37803087 AACACATAATTAAG
1 AACA-ATAATTAAG
37803101 AACAA
1 AACAA
37803106 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:37815923 original size:46 final size:45
Alignment explanation
Indices: 37815870--37816042 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 45
37815860 TGGTTGAGCA
37815870 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * * * *
37815916 TCTGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * *
37815961 CATCCGGACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
37816009 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37816043 CGGGCGGGTT
Statistics
Matches: 98, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.57
47 25 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.32
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:37816026 original size:93 final size:93
Alignment explanation
Indices: 37815867--37816037 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
37815857 GGATGGTTGA
* * * *
37815867 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37815932 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
37815960 GCATCCGGACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
37816025 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
37816038 ACTTACGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37820820 original size:37 final size:37
Alignment explanation
Indices: 37820770--37820896 Score: 245
Period size: 37 Copynumber: 3.4 Consensus size: 37
37820760 TTATTACGAA
*
37820770 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
37820807 GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
37820844 GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
37820881 GTCTTACCCGGACATA
1 GTCTTACCCGGACATA
37820897 TTTCCAAGTT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 89 1.00
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
Found at i:37820994 original size:48 final size:48
Alignment explanation
Indices: 37820936--37821039 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
37820926 TGTTACAACA
37820936 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
*
37820984 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
37821032 TTCACATT
1 TTCACATT
37821040 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
Found at i:37821139 original size:47 final size:47
Alignment explanation
Indices: 37821031--37821325 Score: 500
Period size: 47 Copynumber: 6.1 Consensus size: 47
37821021 CACACATATA
37821031 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
*
37821080 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
37821127 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
37821174 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
*
37821223 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
37821270 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
37821319 TTTCACA
1 TTTCACA
37821326 AATTTTGATA
Statistics
Matches: 234, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
47 135 0.58
49 99 0.42
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
Found at i:37821140 original size:25 final size:25
Alignment explanation
Indices: 37821112--37821190 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
37821102 ATTAGGCCTT
37821112 ATCACATATATACATTTTCACATTC
1 ATCACATATATACATTTTCACATTC
*** **
37821137 ATCACAT-TGGCCATTAGGC-C-TT-
1 ATCACATATATACATT-TTCACATTC
*
37821159 ATCACATATATACACTTTCACATTC
1 ATCACATATATACATTTTCACATTC
37821184 ATCACAT
1 ATCACAT
37821191 CGGCCATTAG
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.21
23 7 0.18
24 8 0.21
25 15 0.39
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (25 bp):
ATCACATATATACATTTTCACATTC
Found at i:37821181 original size:143 final size:144
Alignment explanation
Indices: 37821031--37821325 Score: 538
Period size: 143 Copynumber: 2.0 Consensus size: 144
37821021 CACACATATA
37821031 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
37821096 TCGGCCATTAGGCCTTATCACATATATACATTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
37821161 CAC-ATATATACAC
131 CACAATATATACAC
*
37821174 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
37821239 TTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
37821304 CACATATATATACAC
131 CACA-ATATATACAC
37821319 TTTCACA
1 TTTCACA
37821326 AATTTTGATA
Statistics
Matches: 146, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
143 129 0.88
145 17 0.12
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (144 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACAATATATACAC
Found at i:37821314 original size:96 final size:96
Alignment explanation
Indices: 37821031--37821325 Score: 540
Period size: 96 Copynumber: 3.1 Consensus size: 96
37821021 CACACATATA
*
37821031 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
37821096 TCGGCCATTAGGCCTTATCAC--ATATATACAT
64 TCGGCCATTAGGCCTTATCACATATATATACAT
37821127 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
37821192 GGCCATTAGGCCTTATCACATATATATACAT
66 GGCCATTAGGCCTTATCACATATATATACAT
37821223 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
37821288 GGCCATTAGGCCTTATCACATATATATACAC
66 GGCCATTAGGCCTTATCACATATATATACAT
37821319 TTTCACA
1 TTTCACA
37821326 AATTTTGATA
Statistics
Matches: 195, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
94 47 0.24
96 148 0.76
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACAT
Found at i:37824256 original size:40 final size:40
Alignment explanation
Indices: 37824186--37824310 Score: 101
Period size: 40 Copynumber: 3.1 Consensus size: 40
37824176 CGGAATTTAA
* * * * *
37824186 CCGGTTATAGCGACTCGCTCGATTGTCTTCGGGACATAGC
1 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGACATAGC
*
37824226 CCGGTTATAGTGATTCGCACAATTGCCTTCGAGA-ATTAGC
1 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGACA-TAGC
* * ** * *
37824266 CCGGATT-TAGTCACTTAGCACAAAAGCCTTCGGGACTTAGT
1 CCGG-TTATAGTGA-TTCGCACAATTGCCTTCGGGACATAGC
37824307 CCGG
1 CCGG
37824311 ATACCATTCG
Statistics
Matches: 68, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
39 1 0.01
40 41 0.60
41 26 0.38
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.27
Consensus pattern (40 bp):
CCGGTTATAGTGATTCGCACAATTGCCTTCGGGACATAGC
Found at i:37825099 original size:40 final size:40
Alignment explanation
Indices: 37825055--37825291 Score: 341
Period size: 40 Copynumber: 5.9 Consensus size: 40
37825045 CCAGCATGAT
* ** * * *
37825055 TGCTCTTCGGGACCTAGCCCGGCTACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
* * * *
37825095 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAC-AA
1 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
*
37825134 TTGCTCTTCGAAATTTAGCCCGGATATATCATTAGCACGAA
1 -TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
37825175 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
* *
37825215 TGCTCTTCGGAATTTAGCCAGAATATATCATTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
37825255 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCAC
1 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCAC
37825292 AATTACCTTC
Statistics
Matches: 181, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 177 0.98
41 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
Found at i:37825337 original size:80 final size:79
Alignment explanation
Indices: 37825053--37825383 Score: 348
Period size: 80 Copynumber: 4.2 Consensus size: 79
37825043 CACCAGCATG
** * * * * *
37825053 ATTGCTCTTCGGGACCTAGCCCGGCTACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGA
1 ATTGCTCTTC-GGATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAGCCCGGA
*
37825118 TACATCACTAGCACA
65 TATATCACTAGCACA
*
37825133 ATTGCTCTTCGAAATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAGCCCGGA
1 ATTGCTCTTCG-GATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAGCCCGGA
*
37825198 TATATCATTAGCACGA
65 TATATCACTAGCAC-A
* *
37825214 A-TGCTCTTCGGAATTTAGCCAGAATATATCATTAGCACGAATGCTCTTCGGAATTTAGCCCGGA
1 ATTGCTCTTCGG-ATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAGCCCGGA
*
37825278 TATATCATTAGCACA
65 TATATCACTAGCACA
* * * * * * * *
37825293 ATTAC-CTTCGGGTCTTAACCCGGGTATAATAATTCGCACAAATGC-CTTC-GAGTCTTAGCCCG
1 ATTGCTCTTCGGAT-TTAGCCCGGATAT-ATCATTAGCACGAATGCTCTTCGGAAT-TTAGCCCG
*
37825355 GATATATTCACTAGCATA
63 GATATA-TCACTAGCACA
*
37825373 AATGC-CTTCGG
1 ATTGCTCTTCGG
37825384 GACATAGCCC
Statistics
Matches: 216, Mismatches: 27, Indels: 16
0.83 0.10 0.06
Matches are distributed among these distances:
78 4 0.02
79 36 0.17
80 174 0.81
81 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (79 bp):
ATTGCTCTTCGGATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
ATATCACTAGCACA
Found at i:37825341 original size:40 final size:40
Alignment explanation
Indices: 37825246--37825398 Score: 121
Period size: 40 Copynumber: 3.8 Consensus size: 40
37825236 AATATATCAT
* * * * *
37825246 TAGCACGAATGCTCTTCGGAAT-TTAGCCCGGATAT-ATCAT
1 TAGCACAAATGC-CTTCGG-GTCTTAGCCCGGGTATAATAAC
* * * *
37825286 TAGCACAATTACCTTCGGGTCTTAACCCGGGTATAATAAT
1 TAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATAATAAC
* * * * *
37825326 TCGCACAAATGCCTTCGAGTCTTAGCCCGGATATATTCAC
1 TAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATAATAAC
* * *
37825366 TAGCATAAATGCCTTCGGGACATAGCCCGGGTA
1 TAGCACAAATGCCTTCGGGTCTTAGCCCGGGTA
37825399 CCATTCAAAT
Statistics
Matches: 89, Mismatches: 22, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
38 1 0.01
39 17 0.19
40 71 0.80
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
TAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATAATAAC
Found at i:37825370 original size:120 final size:120
Alignment explanation
Indices: 37825086--37825383 Score: 333
Period size: 120 Copynumber: 2.5 Consensus size: 120
37825076 GCTACATCAC
* * * *
37825086 TAGCACGAATGCTCTTCGGAA-CTTAGTCCGGATACATCACTAGCACAATTGCTCTTCGAAATTT
1 TAGCACAAATGCTCTTCGGAATCTTAGCCCGGATATATCACTAGCACAA-TGCTCTTCGGAATTT
* * *
37825150 AGCCCGGATATATCATTAGCACGAATGCTCTTCGGAATTTAGCCCGGATATATCAT
65 AGCCCGGATATATCATTAGCACGAATACTCTTCGGAATTTAACCCGGATATATAAT
* * * *
37825206 TAGCACGAATGCTCTTCGGAAT-TTAGCCAGAATATATCATTAGCACGAATGCTCTTCGGAATTT
1 TAGCACAAATGCTCTTCGGAATCTTAGCCCGGATATATCACTAGCAC-AATGCTCTTCGGAATTT
* *
37825270 AGCCCGGATATATCATTAGCAC-AATTAC-CTTCGG-GTCTTAACCCGGGTATAATAAT
65 AGCCCGGATATATCATTAGCACGAA-TACTCTTCGGAAT-TTAACCCGGATAT-ATAAT
* * *
37825326 TCGCACAAATGC-CTTC-GAGTCTTAGCCCGGATATATTCACTAGCATAAATGC-CTTCGG
1 TAGCACAAATGCTCTTCGGAATCTTAGCCCGGATATA-TCACTAGCA-CAATGCTCTTCGG
37825384 GACATAGCCC
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
118 4 0.03
119 41 0.27
120 105 0.69
121 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (120 bp):
TAGCACAAATGCTCTTCGGAATCTTAGCCCGGATATATCACTAGCACAATGCTCTTCGGAATTTA
GCCCGGATATATCATTAGCACGAATACTCTTCGGAATTTAACCCGGATATATAAT
Found at i:37827342 original size:37 final size:37
Alignment explanation
Indices: 37827292--37827418 Score: 200
Period size: 37 Copynumber: 3.4 Consensus size: 37
37827282 TTATTACGAA
*
37827292 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
* * *
37827329 GTCTTACCCGGACATAACCTCCACATGTAGTTATTGG
1 GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
* *
37827366 GTCTTACCCGGATATAACCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
37827403 GTCTTACCCGGACATA
1 GTCTTACCCGGACATA
37827419 TTTCCAAGTT
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAACCTCCACACGTAGTCATCGG
Found at i:37827516 original size:48 final size:48
Alignment explanation
Indices: 37827458--37827561 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
37827448 TGTTACAACA
*
37827458 TTCACATTAGCCATTCGGCTTTACCACATATGCATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37827506 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37827554 TTCACATT
1 TTCACATT
37827562 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:37827654 original size:96 final size:94
Alignment explanation
Indices: 37827553--37827930 Score: 677
Period size: 96 Copynumber: 4.0 Consensus size: 94
37827543 CACACATATA
*
37827553 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
37827618 TCGGCCATTAGGCCTTATCACATATATACAT
64 TCGGCCATTAGGCCTTATCACATATATACAT
37827649 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
37827714 GGCCATTAGGCCTTATCACATATATATACAT
66 GGCCATTAGGCCTTATCAC--ATATATACAT
37827745 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
37827810 GGCCATTAGGCCTTATCACATATATATGCA-
66 GGCCATTAGGCCTTATCACATATATA--CAT
37827840 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
37827905 GGCCATTAAGCCTTATCACATATATA
66 GGCCATTAGGCCTTATCACATATATA
37827931 TACACTTTCA
Statistics
Matches: 276, Mismatches: 2, Indels: 9
0.96 0.01 0.03
Matches are distributed among these distances:
94 54 0.20
95 90 0.33
96 132 0.48
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (94 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACAT
Found at i:37827661 original size:47 final size:47
Alignment explanation
Indices: 37827553--37827942 Score: 647
Period size: 47 Copynumber: 8.1 Consensus size: 47
37827543 CACACATATA
37827553 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
*
37827602 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
37827649 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
37827696 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
*
37827745 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
37827792 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATGCA-
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA--CAC
*
37827840 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
37827887 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
37827936 TTTCACA
1 TTTCACA
37827943 AATTTTGATA
Statistics
Matches: 323, Mismatches: 11, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
46 2 0.01
47 177 0.55
48 43 0.13
49 101 0.31
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
Found at i:37827662 original size:25 final size:25
Alignment explanation
Indices: 37827634--37827712 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
37827624 ATTAGGCCTT
37827634 ATCACATATATACATTTTCACATTC
1 ATCACATATATACATTTTCACATTC
*** **
37827659 ATCACAT-TGGCCATTAGGC-C-TT-
1 ATCACATATATACATT-TTCACATTC
*
37827681 ATCACATATATACACTTTCACATTC
1 ATCACATATATACATTTTCACATTC
37827706 ATCACAT
1 ATCACAT
37827713 CGGCCATTAG
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.21
23 7 0.18
24 8 0.21
25 15 0.39
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (25 bp):
ATCACATATATACATTTTCACATTC
Found at i:37827702 original size:143 final size:143
Alignment explanation
Indices: 37827552--37827942 Score: 671
Period size: 143 Copynumber: 2.7 Consensus size: 143
37827542 TCACACATAT
37827552 ATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
1 ATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
* *
37827617 ATCGGCCATTAGGCCTTATCACATATATACATTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
37827682 TCACATATATA-C
131 TCACATATATAGC
*
37827694 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
1 A-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
37827759 CATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
65 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
37827824 ATCACATATATATGC
130 ATCACATATATA-GC
*
37827839 ATTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
1 ATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
*
37827902 ATCGGCCATTAAGCCTTATCACATATATATACACTTTCACA
66 ATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACA
37827943 AATTTTGATA
Statistics
Matches: 236, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
142 45 0.19
143 136 0.58
144 53 0.22
145 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (143 bp):
ATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATAGC
Found at i:37843250 original size:46 final size:46
Alignment explanation
Indices: 37843200--37843372 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
37843190 TGGTTGAGCA
37843200 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
37843246 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
37843291 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
37843339 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37843373 GGGGCGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37843356 original size:93 final size:93
Alignment explanation
Indices: 37843197--37843367 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
37843187 GGATGGTTGA
* *
37843197 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37843262 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
37843290 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37843355 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37843368 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37850216 original size:93 final size:93
Alignment explanation
Indices: 37850109--37850279 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37850099 GCCCCTAAGT
* *
37850109 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37850174 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
37850202 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37850267 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37850280 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37850276 original size:46 final size:46
Alignment explanation
Indices: 37850104--37850276 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
37850094 AACCCGCCCC
* * * *
37850104 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
37850150 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
37850198 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
37850243 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37850277 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:37850734 original size:30 final size:30
Alignment explanation
Indices: 37850700--37850759 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37850690 ATTTAATACG
37850700 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37850730 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37850760 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37857061 original size:93 final size:93
Alignment explanation
Indices: 37856954--37857124 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37856944 GCCCCTAAGT
* *
37856954 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37857019 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
37857047 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37857112 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37857125 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37857121 original size:46 final size:46
Alignment explanation
Indices: 37856949--37857121 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
37856939 AACCCGCCCC
* * * *
37856949 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
37856995 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
37857043 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
37857088 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37857122 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:37857581 original size:30 final size:30
Alignment explanation
Indices: 37857547--37857606 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37857537 ATTTAATACG
37857547 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37857577 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37857607 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37859930 original size:46 final size:46
Alignment explanation
Indices: 37859880--37860052 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
37859870 TGGTTGAGCA
37859880 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
37859926 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
37859971 CATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
37860019 -CCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37860053 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 56 0.55
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37860036 original size:93 final size:93
Alignment explanation
Indices: 37859877--37860047 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
37859867 GGATGGTTGA
* *
37859877 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
37859942 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
37859970 GCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTTGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
37860034 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
37860048 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37861806 original size:49 final size:49
Alignment explanation
Indices: 37861747--37861879 Score: 194
Period size: 49 Copynumber: 2.7 Consensus size: 49
37861737 CCACATCAAA
* * * *
37861747 GTCGATGCCATGTCCCAGATAAGTCTTGCACTGACTTTCATATATCGAT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAT
* * * *
37861796 GTCGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGGT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAT
37861845 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC
37861880 ACACAACAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 74 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAT
Found at i:37861963 original size:48 final size:48
Alignment explanation
Indices: 37861905--37862111 Score: 210
Period size: 46 Copynumber: 4.4 Consensus size: 48
37861895 GCCATGTCTT
* *
37861905 AGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCC
1 AGACATGTCTTACACTAGCTTGTACATCTCGAGGCCAATGCATGTCCC
* * * * **
37861953 AGACATGTCTTACACTAGC-TCT-CGTCTCAATGCCGTTGCATGTCCC
1 AGACATGTCTTACACTAGCTTGTACATCTCGAGGCCAATGCATGTCCC
* * *
37861999 AGACATGTCTTACAGTGGCTTGTACATCTCGAGGCCAATGCATATCCC
1 AGACATGTCTTACACTAGCTTGTACATCTCGAGGCCAATGCATGTCCC
* * * *
37862047 AGACATGTCTTACACTGGCTCTCGTA-A--T-GTGGCCGATGCATGTCCT
1 AGACATGTCTTACACTAGCT-T-GTACATCTCGAGGCCAATGCATGTCCC
*
37862093 AGACATGTCTTATACTAGC
1 AGACATGTCTTACACTAGC
37862112 ACACATATCA
Statistics
Matches: 131, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
46 66 0.50
47 5 0.04
48 55 0.42
49 2 0.02
50 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
AGACATGTCTTACACTAGCTTGTACATCTCGAGGCCAATGCATGTCCC
Found at i:37862020 original size:94 final size:93
Alignment explanation
Indices: 37861905--37862111 Score: 283
Period size: 94 Copynumber: 2.2 Consensus size: 93
37861895 GCCATGTCTT
* * *
37861905 AGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTCTTACACTA
1 AGACATGTCTTACACTAGCTTGTACATCTCGAGGCCAATGCATATCCCAGACATGTCTTACACTA
*
37861970 GCTCTCGTCTCAA-T-GCCGTTGCATGTCCC
66 GCTCTCG--T-AAGTGGCCGATGCATGTCCC
* * *
37861999 AGACATGTCTTACAGTGGCTTGTACATCTCGAGGCCAATGCATATCCCAGACATGTCTTACACTG
1 AGACATGTCTTACACTAGCTTGTACATCTCGAGGCCAATGCATATCCCAGACATGTCTTACACTA
*
37862064 GCTCTCGTAATGTGGCCGATGCATGTCCT
66 GCTCTCGTAA-GTGGCCGATGCATGTCCC
*
37862093 AGACATGTCTTATACTAGC
1 AGACATGTCTTACACTAGC
37862112 ACACATATCA
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 1 0.01
94 95 0.96
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
AGACATGTCTTACACTAGCTTGTACATCTCGAGGCCAATGCATATCCCAGACATGTCTTACACTA
GCTCTCGTAAGTGGCCGATGCATGTCCC
Found at i:37862799 original size:20 final size:20
Alignment explanation
Indices: 37862774--37862812 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37862764 ACGATTTCAA
37862774 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
37862794 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
37862813 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:37864650 original size:24 final size:24
Alignment explanation
Indices: 37864623--37864678 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
37864613 ATATTATTTG
37864623 AATTAGATTAGATTAATCAAATTA
1 AATTAGATTAGATTAATCAAATTA
* *
37864647 AATTAAATTAGATTAATCAATTTA
1 AATTAGATTAGATTAATCAAATTA
37864671 AATT-GATT
1 AATTAGATT
37864679 GAATTGAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 3 0.10
24 26 0.90
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (24 bp):
AATTAGATTAGATTAATCAAATTA
Found at i:37865521 original size:17 final size:17
Alignment explanation
Indices: 37865501--37865534 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37865491 TGCAGGAGTC
37865501 TGTCAAAATTTGGAGAA
1 TGTCAAAATTTGGAGAA
37865518 TGTCAAAATTTGGAGAA
1 TGTCAAAATTTGGAGAA
37865535 AAAGGGAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (17 bp):
TGTCAAAATTTGGAGAA
Found at i:37869383 original size:19 final size:19
Alignment explanation
Indices: 37869361--37869415 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
37869351 AATAAAATTT
37869361 TAAAATATATTTAAAA-AAA
1 TAAAA-ATATTTAAAATAAA
*
37869380 TAAAAAT-TATGAAAATAAA
1 TAAAAATAT-TTAAAATAAA
37869399 TAAAAACTATTTAAAAT
1 TAAAAA-TATTTAAAAT
37869416 TTAAAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 1 0.03
18 7 0.23
19 14 0.47
20 7 0.23
21 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (19 bp):
TAAAAATATTTAAAATAAA
Found at i:37869402 original size:27 final size:25
Alignment explanation
Indices: 37869340--37869404 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 25
37869330 TTTCATATTT
*
37869340 TAAATATAAAAAATAAAATTTTAAAA
1 TAAATA-AAAAAATAAAATTTGAAAA
*
37869366 TATATTTAAAAAAATAAAAATTATGAAAA
1 TA-A-ATAAAAAAAT-AAAATT-TGAAAA
37869395 TAAATAAAAA
1 TAAATAAAAA
37869405 CTATTTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
26 2 0.06
27 14 0.44
28 9 0.28
29 7 0.22
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAAATAAAATTTGAAAA
Found at i:37869459 original size:20 final size:18
Alignment explanation
Indices: 37869411--37869461 Score: 50
Period size: 20 Copynumber: 2.7 Consensus size: 18
37869401 AAAACTATTT
37869411 AAAATTTAAAA-ATAAAA
1 AAAATTTAAAATATAAAA
*
37869428 AAGATTTTTAAAATATAAATA
1 AA-A-ATTTAAAATATAAA-A
37869449 AAAATTCTAAAAT
1 AAAATT-TAAAAT
37869462 TCAATTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.07
18 1 0.04
19 9 0.33
20 12 0.44
21 3 0.11
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
AAAATTTAAAATATAAAA
Found at i:37871294 original size:27 final size:28
Alignment explanation
Indices: 37871264--37871316 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
37871254 TATATATAAA
*
37871264 AAATAAAAAAATAAAAA-ATATTTTATT
1 AAATAAAAAAATAAAAATAAATTTTATT
*
37871291 AAATAAATAAATAAAAATAAATTTTA
1 AAATAAAAAAATAAAAATAAATTTTA
37871317 AGATTAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (28 bp):
AAATAAAAAAATAAAAATAAATTTTATT
Found at i:37872057 original size:11 final size:11
Alignment explanation
Indices: 37872041--37872079 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
37872031 AAACAGTAGG
37872041 AAACAACAACA
1 AAACAACAACA
*
37872052 AAACAATGAA-A
1 AAACAA-CAACA
37872063 AAACAACAACA
1 AAACAACAACA
37872074 AAACAA
1 AAACAA
37872080 TAGAATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 2 0.08
11 20 0.83
12 2 0.08
ACGTcount: A:0.74, C:0.21, G:0.03, T:0.03
Consensus pattern (11 bp):
AAACAACAACA
Found at i:37872749 original size:18 final size:18
Alignment explanation
Indices: 37872722--37872777 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
37872712 TTTAATTTTT
*
37872722 ATTTAATATTTTTATAAA
1 ATTTATTATTTTTATAAA
*
37872740 ATTTATTATTGATTTA-CAA
1 ATTTATTATT--TTTATAAA
* *
37872759 ATTTATAATTTTTTTAAA
1 ATTTATTATTTTTATAAA
37872777 A
1 A
37872778 ATATTTTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 3 0.10
18 12 0.40
19 11 0.37
20 4 0.13
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (18 bp):
ATTTATTATTTTTATAAA
Found at i:37872779 original size:19 final size:19
Alignment explanation
Indices: 37872725--37872779 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
37872715 AATTTTTATT
*
37872725 TAATATTTTTATAAAATTTA
1 TAATTTTTTTA-AAAATTTA
* ** *
37872745 TTATTGATTTACAAATTTA
1 TAATTTTTTTAAAAATTTA
37872764 TAATTTTTTTAAAAAT
1 TAATTTTTTTAAAAAT
37872780 ATTTTTTAAT
Statistics
Matches: 26, Mismatches: 9, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (19 bp):
TAATTTTTTTAAAAATTTA
Found at i:37872807 original size:21 final size:21
Alignment explanation
Indices: 37872768--37872807 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37872758 AATTTATAAT
* **
37872768 TTTTTTAAAAATATTTTTTAA
1 TTTTTAAAAAATAAGTTTTAA
37872789 TTTTTAAAAAATAAGTTTT
1 TTTTTAAAAAATAAGTTTT
37872808 GAAATAAATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTTTAAAAAATAAGTTTTAA
Found at i:37886753 original size:13 final size:13
Alignment explanation
Indices: 37886735--37886759 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37886725 CATACGCTCG
37886735 TGTGACCAATCCA
1 TGTGACCAATCCA
37886748 TGTGACCAATCC
1 TGTGACCAATCC
37886760 GTGTAGACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (13 bp):
TGTGACCAATCCA
Found at i:37888697 original size:24 final size:24
Alignment explanation
Indices: 37888665--37888747 Score: 148
Period size: 24 Copynumber: 3.5 Consensus size: 24
37888655 AATCTCAAAT
37888665 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
37888689 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
*
37888713 GCACTATGTGTGCAATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37888737 GCACTATGTGT
1 GCACTATGTGT
37888748 ACGAACATAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:37888717 original size:48 final size:48
Alignment explanation
Indices: 37888665--37888775 Score: 161
Period size: 48 Copynumber: 2.3 Consensus size: 48
37888655 AATCTCAAAT
* * ** *
37888665 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCAATTTACTATGGCACTATGTGTACGAACATAATA-A
37888713 GCACTATGTGTGCAATTTACTATGGCACTATGTGTACGAACATAATAA
1 GCACTATGTGTGCAATTTACTATGGCACTATGTGTACGAACATAATAA
37888761 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
37888776 CGTTTGGTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCAATTTACTATGGCACTATGTGTACGAACATAATAA
Found at i:37891419 original size:68 final size:70
Alignment explanation
Indices: 37891347--37891544 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
37891337 ACACCCTGTA
* * * *
37891347 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
37891409 ATAAAT
65 ATAAAT
*
37891415 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
37891480 ATAAAT
65 ATAAAT
*
37891486 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
37891545 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:37891458 original size:41 final size:41
Alignment explanation
Indices: 37891413--37891530 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37891403 TGAAAGATAA
37891413 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37891454 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37891484 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37891525 ATGTAG
1 ATGTAG
37891531 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37891470 original size:71 final size:71
Alignment explanation
Indices: 37891381--37891544 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37891371 GAGATGTATC
37891381 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37891446 AGGACA
66 AGGACA
37891452 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37891517 AGGACA
66 AGGACA
37891523 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37891545 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37898986 original size:68 final size:70
Alignment explanation
Indices: 37898914--37899111 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
37898904 ACACCCTGTA
* * * *
37898914 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
37898976 ATAAAT
65 ATAAAT
*
37898982 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
37899047 ATAAAT
65 ATAAAT
*
37899053 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
37899112 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:37899025 original size:41 final size:41
Alignment explanation
Indices: 37898980--37899097 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37898970 TGAAAGATAA
37898980 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37899021 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37899051 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37899092 ATGTAG
1 ATGTAG
37899098 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37899037 original size:71 final size:71
Alignment explanation
Indices: 37898948--37899111 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37898938 GAGATGTATC
37898948 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37899013 AGGACA
66 AGGACA
37899019 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37899084 AGGACA
66 AGGACA
37899090 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37899112 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37901726 original size:68 final size:70
Alignment explanation
Indices: 37901654--37901851 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
37901644 ACACCCTGTA
* * * *
37901654 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
37901716 ATAAAT
65 ATAAAT
*
37901722 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
37901787 ATAAAT
65 ATAAAT
*
37901793 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
37901852 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:37901765 original size:41 final size:41
Alignment explanation
Indices: 37901720--37901837 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37901710 TGAAAGATAA
37901720 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37901761 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37901791 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37901832 ATGTAG
1 ATGTAG
37901838 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37901777 original size:71 final size:71
Alignment explanation
Indices: 37901688--37901851 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37901678 GAGATGTATC
37901688 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37901753 AGGACA
66 AGGACA
37901759 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37901824 AGGACA
66 AGGACA
37901830 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37901852 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37909288 original size:68 final size:70
Alignment explanation
Indices: 37909216--37909413 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
37909206 ACACCCTGTA
* * * *
37909216 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
37909278 ATAAAT
65 ATAAAT
*
37909284 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
37909349 ATAAAT
65 ATAAAT
*
37909355 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
37909414 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:37909327 original size:41 final size:41
Alignment explanation
Indices: 37909282--37909399 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37909272 TGAAAGATAA
37909282 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37909323 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37909353 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37909394 ATGTAG
1 ATGTAG
37909400 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37909339 original size:71 final size:71
Alignment explanation
Indices: 37909250--37909413 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37909240 GAGATGTATC
37909250 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37909315 AGGACA
66 AGGACA
37909321 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37909386 AGGACA
66 AGGACA
37909392 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37909414 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37910723 original size:21 final size:21
Alignment explanation
Indices: 37910697--37910736 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
37910687 GCGACGGTAA
*
37910697 CGGGTAAGGGGTGTTACAACT
1 CGGGTAAGGGGCGTTACAACT
*
37910718 CGGGTACGGGGCGTTACAA
1 CGGGTAAGGGGCGTTACAA
37910737 TTTTATTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.40, T:0.20
Consensus pattern (21 bp):
CGGGTAAGGGGCGTTACAACT
Found at i:37914185 original size:29 final size:29
Alignment explanation
Indices: 37914095--37914254 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
37914085 ACTCGATTTC
* * **
37914095 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
37914124 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
37914152 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
37914182 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37914211 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
37914240 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
37914255 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:37920470 original size:24 final size:24
Alignment explanation
Indices: 37920438--37920524 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
37920428 AATCTCAAAT
37920438 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
37920462 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
37920486 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
37920510 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
37920525 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:37920490 original size:48 final size:48
Alignment explanation
Indices: 37920438--37920546 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
37920428 AATCTCAAAT
** *
37920438 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
37920486 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
37920534 GCACTATGTGTGC
1 GCACTATGTGTGC
37920547 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:37920537 original size:24 final size:24
Alignment explanation
Indices: 37920438--37920546 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
37920428 AATCTCAAAT
*
37920438 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
37920462 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
37920486 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
37920510 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
37920534 GCACTATGTGTGC
1 GCACTATGTGTGC
37920547 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:37923735 original size:93 final size:93
Alignment explanation
Indices: 37923623--37923794 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
37923613 GCCCATAAGT
* *
37923623 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37923688 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37923716 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37923781 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37923795 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37923790 original size:46 final size:46
Alignment explanation
Indices: 37923615--37923790 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
37923605 TGTAACCCGC
* * *
37923615 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
37923661 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
37923711 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
37923754 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37923791 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:37932359 original size:21 final size:20
Alignment explanation
Indices: 37932328--37932368 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
37932318 AAACCAAAAA
37932328 CCATGTATATATTTAATCATAG
1 CCATGTATATA--TAATCATAG
37932350 CCAT-TATATATAATCATAG
1 CCATGTATATATAATCATAG
37932369 TTCTCATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.47
21 6 0.32
22 4 0.21
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (20 bp):
CCATGTATATATAATCATAG
Found at i:37935853 original size:41 final size:41
Alignment explanation
Indices: 37935777--37935905 Score: 163
Period size: 41 Copynumber: 3.2 Consensus size: 41
37935767 TTTAGCGGCG
* *
37935777 TTTTTGGTAAAACGCTGCT-AAAAACAGAGCAATAGCTGCA
1 TTTTTGGCAAAGCGCTGCTAAAAAACAGAGCAATAGCTGCA
* * *
37935817 TTTTTGGCAAAGCGCTGCTAAAAAACAGAGCGATAGCGGCG
1 TTTTTGGCAAAGCGCTGCTAAAAAACAGAGCAATAGCTGCA
* * *
37935858 TTTTTGGGAAAGCGCCGCTAAGAAACAGAGCAATAG-TGACA
1 TTTTTGGCAAAGCGCTGCTAAAAAACAGAGCAATAGCTG-CA
37935899 TTTTTGG
1 TTTTTGG
37935906 TAAAACGCCA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
40 18 0.24
41 58 0.76
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (41 bp):
TTTTTGGCAAAGCGCTGCTAAAAAACAGAGCAATAGCTGCA
Found at i:37935920 original size:82 final size:81
Alignment explanation
Indices: 37935769--37935921 Score: 218
Period size: 82 Copynumber: 1.9 Consensus size: 81
37935759 AATAGGGATT
* * * **
37935769 TAGCGGCGTTTTTGGTAAAACGCTGCTAAAAACAGAGCAATAGCTGCATTTTTGGCAAAGCGCTG
1 TAGCGGCGTTTTTGGGAAAACGCCGCTAAAAACAGAGCAATAGCTGCATTTTTGGCAAAACGCCA
37935834 CTAAAAAACAGAGCGA
66 CTAAAAAACAGAGCGA
* *
37935850 TAGCGGCGTTTTTGGGAAAGCGCCGCTAAGAAACAGAGCAATAG-TGACATTTTTGGTAAAACGC
1 TAGCGGCGTTTTTGGGAAAACGCCGCTAA-AAACAGAGCAATAGCTG-CATTTTTGGCAAAACGC
37935914 CACTAAAA
64 CACTAAAA
37935922 GTCATATAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 28 0.44
82 35 0.56
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (81 bp):
TAGCGGCGTTTTTGGGAAAACGCCGCTAAAAACAGAGCAATAGCTGCATTTTTGGCAAAACGCCA
CTAAAAAACAGAGCGA
Found at i:37936008 original size:15 final size:16
Alignment explanation
Indices: 37935978--37936010 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37935968 TAGTCTATAT
37935978 AACCCCTAAAACCCTA
1 AACCCCTAAAACCCTA
*
37935994 AACCCTTAAAA-CCTA
1 AACCCCTAAAACCCTA
37936009 AA
1 AA
37936011 AAAACCCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.15
Consensus pattern (16 bp):
AACCCCTAAAACCCTA
Found at i:37936043 original size:55 final size:56
Alignment explanation
Indices: 37935932--37936053 Score: 156
Period size: 57 Copynumber: 2.2 Consensus size: 56
37935922 GTCATATAAC
** * * *
37935932 CCCTAAAAGCTTAAACCCCAAAAAAATCATAAACACTAGTCTATATAACCCCTAAAA
1 CCCTAAACCCTTAAAACCCAAAAAAACCATAAACACTAATC-ATATAACCCCTAAAA
* * *
37935989 CCCTAAACCCTTAAAACCTAAAAAAACCCTAAACACTAATC-TATAACCCTTAAAA
1 CCCTAAACCCTTAAAACCCAAAAAAACCATAAACACTAATCATATAACCCCTAAAA
37936044 CCCTAAACCC
1 CCCTAAACCC
37936054 CAAAAAACAT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 23 0.40
57 34 0.60
ACGTcount: A:0.48, C:0.32, G:0.02, T:0.19
Consensus pattern (56 bp):
CCCTAAACCCTTAAAACCCAAAAAAACCATAAACACTAATCATATAACCCCTAAAA
Found at i:37936220 original size:15 final size:15
Alignment explanation
Indices: 37936181--37936231 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
37936171 GGGATTAATA
*
37936181 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* * *
37936195 TCTATGATTTAGGGT
1 TTTATGGTTTAAGGT
37936210 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
37936225 TTAATGG
1 TTTATGG
37936232 CCATGGGTAG
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:37936685 original size:19 final size:20
Alignment explanation
Indices: 37936647--37936690 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
37936637 TTATATTTAA
*
37936647 AAAAACATTGATAAATAAAT
1 AAAAACATTGATAAACAAAT
37936667 AAAAACATTGAT-AACAAAT
1 AAAAACATTGATAAACAAAT
37936686 AAAAA
1 AAAAA
37936691 TGAAATACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (20 bp):
AAAAACATTGATAAACAAAT
Found at i:37936946 original size:6 final size:6
Alignment explanation
Indices: 37936930--37936960 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
37936920 ACCCATACGA
*
37936930 TCCCTT CCCCTT TCCCTT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
37936961 GGTTTTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
TCCCTT
Found at i:37938004 original size:47 final size:47
Alignment explanation
Indices: 37937948--37938043 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
37937938 GTTGAATTTA
37937948 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGACAAGTTACTTAGTT
* *
37937995 AAGCTTGTTAAATTTGCTCTTATTATTTTCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGACAAGTTACTTAGTT
37938042 AA
1 AA
37938044 ATAAAATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTTCGGACAAGTTACTTAGTT
Found at i:37938913 original size:45 final size:45
Alignment explanation
Indices: 37938849--37939110 Score: 352
Period size: 45 Copynumber: 5.9 Consensus size: 45
37938839 CGTATAGTAA
37938849 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
37938894 TATTCAGGCCTTTGAGCCTAGTAGGCTATAATGCTGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
37938939 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * * *
37938984 TATTCAGGCCTTCGAGCCTAGCAGGCTATAATACCAGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * * *
37939029 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGTCAGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * *
37939074 TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATACCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
37939111 ATGAATTCGG
Statistics
Matches: 198, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
42 8 0.04
43 18 0.09
44 5 0.03
45 166 0.84
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:37939671 original size:16 final size:18
Alignment explanation
Indices: 37939640--37939672 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
37939630 AACTCGTCAC
37939640 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
37939658 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
37939673 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:37943951 original size:46 final size:46
Alignment explanation
Indices: 37943788--37943958 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
37943778 AACCCGCCCC
* * * *
37943788 TAAGTGAACTC-GACTCAACTCAAC-AGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
37943832 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAATTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
37943880 TCA-CGAACTCGGACTCAACTGAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
37943925 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37943959 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 12 0.12
45 15 0.15
46 34 0.33
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:37943977 original size:46 final size:45
Alignment explanation
Indices: 37943836--37943977 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
37943826 CATCCATAAA
*
37943836 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAATTACATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-AA--CCATCT-AG
* * * * *
37943883 CGAACTCGGACTCAACTGAACGAGTTCGGACAT-TTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTAG
37943929 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
37943975 TGA
1 TGA
37943978 CATGTCACTT
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 32 0.42
47 30 0.39
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:37950600 original size:47 final size:47
Alignment explanation
Indices: 37950513--37950926 Score: 632
Period size: 47 Copynumber: 8.7 Consensus size: 47
37950503 GATTTTACGC
* *
37950513 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGT
* *
37950562 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
37950609 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
37950658 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
37950707 GATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATGGCCGATGT
37950755 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
37950802 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGT
* * * * *
37950849 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
37950896 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
37950927 TCCCGAAGGG
Statistics
Matches: 344, Mismatches: 16, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
46 2 0.01
47 182 0.53
48 48 0.14
49 112 0.33
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:37950873 original size:25 final size:25
Alignment explanation
Indices: 37950798--37950876 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
37950788 CTAATGGCCG
*
37950798 ATGTGATGAATGTGAAGGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* ***
37950823 ATGTGAT-AAGGCTG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
37950845 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
37950870 ATGTGAT
1 ATGTGAT
37950877 AGGGCCGAGT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 7 0.17
25 16 0.40
ACGTcount: A:0.33, C:0.04, G:0.30, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:37955054 original size:24 final size:24
Alignment explanation
Indices: 37955003--37955215 Score: 326
Period size: 24 Copynumber: 9.0 Consensus size: 24
37954993 GCTTTATCAT
*
37955003 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
37955028 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
37955052 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
37955075 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
37955099 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
37955123 ATAACTGGGGCATAATCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37955146 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37955170 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37955193 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37955216 TGCACTTCCT
Statistics
Matches: 176, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
23 67 0.38
24 97 0.55
25 12 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:37955082 original size:47 final size:47
Alignment explanation
Indices: 37955003--37955215 Score: 331
Period size: 47 Copynumber: 4.5 Consensus size: 47
37954993 GCTTTATCAT
* *
37955003 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT-A
*
37955052 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
* *
37955099 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAATCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
37955146 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
37955193 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37955216 TGCACTTCCT
Statistics
Matches: 154, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
47 112 0.73
48 30 0.19
49 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:37955103 original size:71 final size:70
Alignment explanation
Indices: 37955002--37955215 Score: 331
Period size: 71 Copynumber: 3.0 Consensus size: 70
37954992 TGCTTTATCA
* *
37955002 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT-AATAACTGGGGCATA
37955066 AGCCCTTT
63 AGCCCTTT
* * *
37955074 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAG
37955139 CCCTTT
65 CCCTTT
*
37955145 AATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGC
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGC
37955210 CCTTT
66 CCTTT
37955215 T
1 T
37955216 TGCACTTCCT
Statistics
Matches: 130, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
70 24 0.18
71 90 0.69
72 16 0.12
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (70 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGC
CCTTT
Found at i:37955288 original size:9 final size:9
Alignment explanation
Indices: 37955274--37955330 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
37955264 ATCTCATGTG
37955274 CATATCATA
1 CATATCATA
*
37955283 CATATCATGTG
1 CATATCA--TA
37955294 CATATCATA
1 CATATCATA
* *
37955303 CATGTCATGTG
1 CATATCA--TA
37955314 CATATCATA
1 CATATCATA
37955323 CATATCAT
1 CATATCAT
37955331 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:37955290 original size:20 final size:20
Alignment explanation
Indices: 37955262--37955332 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
37955252 GCATTTATGA
*
37955262 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37955282 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
37955302 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37955322 ACATATCATGT
1 ACATATCATGT
37955333 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:37955297 original size:11 final size:11
Alignment explanation
Indices: 37955267--37955321 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
37955257 TATGAACATC
37955267 TCATGTGCATA
1 TCATGTGCATA
*
37955278 TCA--TACATA
1 TCATGTGCATA
37955287 TCATGTGCATA
1 TCATGTGCATA
* *
37955298 TCA--TACATG
1 TCATGTGCATA
37955307 TCATGTGCATA
1 TCATGTGCATA
37955318 TCAT
1 TCAT
37955322 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:37955410 original size:24 final size:24
Alignment explanation
Indices: 37955369--37955415 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
37955359 ATATATAAAC
* * *
37955369 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
37955393 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
37955416 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:37956662 original size:27 final size:27
Alignment explanation
Indices: 37956642--37956899 Score: 319
Period size: 27 Copynumber: 9.6 Consensus size: 27
37956632 AGGGTATTTT
*
37956642 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
37956669 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
37956696 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
37956723 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
37956750 GGTAATTCTGTAAATC-AGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
37956776 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
37956802 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
37956829 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
37956856 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
37956883 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
37956900 GGAGTACTTT
Statistics
Matches: 203, Mismatches: 20, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
25 1 0.00
26 45 0.22
27 155 0.76
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:37956824 original size:133 final size:134
Alignment explanation
Indices: 37956644--37956898 Score: 415
Period size: 133 Copynumber: 1.9 Consensus size: 134
37956634 GGTATTTTAG
* *
37956644 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
*
37956709 ATCGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGTAAAACGGTAATTCTGTAAATCAGGGTAA
66 ATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCAGGGTAA
37956773 AACGA
130 AACGA
** * * *
37956778 TAATTATGTAAATCG-GGGTAAAATGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
37956842 ATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATC
66 ATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATC
37956899 GGGAGTACTT
Statistics
Matches: 112, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
133 97 0.87
134 15 0.13
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (134 bp):
TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCAGGGTAAA
ACGA
Found at i:37959957 original size:24 final size:24
Alignment explanation
Indices: 37959906--37960117 Score: 326
Period size: 24 Copynumber: 9.0 Consensus size: 24
37959896 GCTTTATCAT
*
37959906 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
37959931 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
37959955 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
37959977 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
37960001 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
37960025 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37960048 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37960072 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
37960095 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
37960118 TCACTTCCTC
Statistics
Matches: 176, Mismatches: 6, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
22 19 0.11
23 50 0.28
24 95 0.54
25 12 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:37960007 original size:70 final size:69
Alignment explanation
Indices: 37959905--37960116 Score: 336
Period size: 70 Copynumber: 3.0 Consensus size: 69
37959895 TGCTTTATCA
* *
37959905 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT-AATAACTGGGGCATA
37959969 AGCCCTT
63 AGCCCTT
* *
37959976 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAG
37960041 CCCTT
65 CCCTT
37960046 TAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAG
1 T-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAG
37960111 CCCTT
65 CCCTT
37960116 T
1 T
37960117 TTCACTTCCT
Statistics
Matches: 132, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
70 74 0.56
71 58 0.44
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (69 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGC
CCTT
Done.