Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 14 of 345
Found at i:4856647 original size:3 final size:3
Alignment explanation
Indices: 4856629--4856677 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
4856619 TTTAATGAGA
*
4856629 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
4856674 TAT T
1 TAT T
4856678 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:4856649 original size:11 final size:11
Alignment explanation
Indices: 4856633--4856671 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
4856623 ATGAGATATT
4856633 TTATTATTTTA
1 TTATTATTTTA
*
4856644 TTATTATTTCA
1 TTATTATTTTA
4856655 TTATTATTTTA
1 TTATTATTTTA
4856666 TTATTA
1 TTATTA
4856672 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:4856657 original size:19 final size:19
Alignment explanation
Indices: 4856629--4856670 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
4856619 TTTAATGAGA
*
4856629 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
4856648 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
4856667 TATT
1 TATT
4856671 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:4867985 original size:10 final size:9
Alignment explanation
Indices: 4867940--4867998 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
4867930 GAATTAAATT
4867940 TATTAAAAA
1 TATTAAAAA
*
4867949 T-TCAAATAA
1 TATTAAA-AA
4867958 TATTAAAAA
1 TATTAAAAA
*
4867967 TA-TATAAA
1 TATTAAAAA
4867975 TATTAAAAAA
1 TATT-AAAAA
4867985 TATTAAAAA
1 TATTAAAAA
4867994 T-TTAA
1 TATTAA
4867999 CTTAACAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
8 15 0.36
9 15 0.36
10 12 0.29
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (9 bp):
TATTAAAAA
Found at i:4867991 original size:17 final size:17
Alignment explanation
Indices: 4867956--4867987 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4867946 AAATTCAAAT
4867956 AATATTAAAAATATATA
1 AATATTAAAAATATATA
4867973 AATATTAAAAA-ATAT
1 AATATTAAAAATATAT
4867988 TAAAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AATATTAAAAATATATA
Found at i:4867998 original size:18 final size:18
Alignment explanation
Indices: 4867956--4867998 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
4867946 AAATTCAAAT
*
4867956 AATATT-AAAAATATATA
1 AATATTAAAAAATATAAA
4867973 AATATTAAAAAATATTAAA
1 AATATTAAAAAATA-TAAA
4867992 AAT-TTAA
1 AATATTAA
4867999 CTTAACAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 6 0.26
18 11 0.48
19 6 0.26
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AATATTAAAAAATATAAA
Found at i:4868449 original size:28 final size:28
Alignment explanation
Indices: 4868331--4868449 Score: 86
Period size: 28 Copynumber: 4.4 Consensus size: 28
4868321 TTTTTTGACA
* * *
4868331 TTTTAT-AACATTTTCTATTTTTTTA-T
1 TTTTATAAAAATTTTATATTTTTATATT
* *
4868357 TTTT-TAAAAA-TTAAAATTTTTAAATATT
1 TTTTATAAAAATTTTATATTTTT--ATATT
* * * **
4868385 TTTT-TGAACATTTTATATTTTTAAAAG
1 TTTTATAAAAATTTTATATTTTTATATT
*
4868412 TTTTAAAAAAATTTTATATTTTTATATT
1 TTTTATAAAAATTTTATATTTTTATATT
4868440 TTTTATAAAA
1 TTTTATAAAA
4868450 TGACACAGTA
Statistics
Matches: 68, Mismatches: 19, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
25 9 0.13
26 7 0.10
27 8 0.12
28 35 0.51
29 9 0.13
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.59
Consensus pattern (28 bp):
TTTTATAAAAATTTTATATTTTTATATT
Found at i:4869559 original size:39 final size:41
Alignment explanation
Indices: 4869485--4869574 Score: 130
Period size: 39 Copynumber: 2.2 Consensus size: 41
4869475 TAAAAAATAT
* * *
4869485 TTATATTAAAAAACACTATCATAAATATAATAAATGTTTTG
1 TTATATTAAAAAACACTATAATAAATATAACAAATGTTTTA
4869526 TTATATTAAAAAACAC-A-AATAAATATAACAAATGTTTTA
1 TTATATTAAAAAACACTATAATAAATATAACAAATGTTTTA
*
4869565 TTTTATTAAA
1 TTATATTAAA
4869575 TATAATTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 28 0.62
40 1 0.02
41 16 0.36
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.39
Consensus pattern (41 bp):
TTATATTAAAAAACACTATAATAAATATAACAAATGTTTTA
Found at i:4870174 original size:12 final size:12
Alignment explanation
Indices: 4870150--4870183 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
4870140 CAAAATCCTA
*
4870150 TTTTTCCTT-TC
1 TTTTTCTTTCTC
4870161 TTTTTCTTTCTC
1 TTTTTCTTTCTC
4870173 TTTTTCTTTCT
1 TTTTTCTTTCT
4870184 TTCCCTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTCTTTCTC
Found at i:4870221 original size:22 final size:21
Alignment explanation
Indices: 4870170--4870222 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
4870160 CTTTTTCTTT
*
4870170 CTCTTTTTCTTTCTTTCCCTG
1 CTCTTTTTCTCTCTTTCCCTG
*
4870191 CTCTGTTTCGTCTCTTTCTCCT-
1 CTCTTTTTC-TCTCTTTC-CCTG
*
4870213 TTCTTTTTCT
1 CTCTTTTTCT
4870223 TTATGTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 14 0.54
23 3 0.12
ACGTcount: A:0.00, C:0.32, G:0.06, T:0.62
Consensus pattern (21 bp):
CTCTTTTTCTCTCTTTCCCTG
Found at i:4870296 original size:16 final size:17
Alignment explanation
Indices: 4870275--4870306 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4870265 TAACATATAT
4870275 ATTATTAT-ATTATTAA
1 ATTATTATAATTATTAA
4870291 ATTATTATAATTATTA
1 ATTATTATAATTATTA
4870307 TTTCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTATTATAATTATTAA
Found at i:4871573 original size:17 final size:18
Alignment explanation
Indices: 4871543--4871577 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
4871533 TTGACCCTTT
*
4871543 TTAAAAATTAAAAATTAA
1 TTAAAAAATAAAAATTAA
4871561 TTAAAAAAT-AAAATTAA
1 TTAAAAAATAAAAATTAA
4871578 CAAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TTAAAAAATAAAAATTAA
Found at i:4871584 original size:14 final size:13
Alignment explanation
Indices: 4871546--4871587 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
4871536 ACCCTTTTTA
4871546 AAAATT-AAAAAT
1 AAAATTAAAAAAT
*
4871558 -TAATTAAAAAAT
1 AAAATTAAAAAAT
4871570 AAAATTAACAAAAT
1 AAAATTAA-AAAAT
4871584 AAAA
1 AAAA
4871588 ACAAATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 4 0.16
12 6 0.24
13 6 0.24
14 9 0.36
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAATTAAAAAAT
Found at i:4871662 original size:7 final size:7
Alignment explanation
Indices: 4871650--4871683 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
4871640 AATATTCACA
4871650 AAATTCC
1 AAATTCC
4871657 AAATTCC
1 AAATTCC
* *
4871664 AAAATCT
1 AAATTCC
4871671 AAATTCC
1 AAATTCC
4871678 AAATTC
1 AAATTC
4871684 AAAGAAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATTCC
Found at i:4871676 original size:14 final size:15
Alignment explanation
Indices: 4871643--4871680 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
4871633 GAAAGAAAAT
4871643 ATTCACAAAATTCCAA
1 ATTC-CAAAATTCCAA
*
4871659 ATTCCAAAA-TCTAA
1 ATTCCAAAATTCCAA
4871673 ATTCCAAA
1 ATTCCAAA
4871681 TTCAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 12 0.57
15 5 0.24
16 4 0.19
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (15 bp):
ATTCCAAAATTCCAA
Found at i:4872776 original size:30 final size:29
Alignment explanation
Indices: 4872728--4872792 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
4872718 TTAAACAATC
*
4872728 AATTAAACTTTAAAAATAATAAAAAAAT-
1 AATTAAACCTTAAAAATAATAAAAAAATA
*
4872756 AATTAAACGCTTATAAAATAATAGAAAAATA
1 AATTAAAC-CTTA-AAAATAATAAAAAAATA
4872787 AATTAA
1 AATTAA
4872793 TTTGTAACGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 8 0.25
29 3 0.09
30 15 0.47
31 6 0.19
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (29 bp):
AATTAAACCTTAAAAATAATAAAAAAATA
Found at i:4879219 original size:58 final size:58
Alignment explanation
Indices: 4879134--4879245 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
4879124 TAATTATAAT
* * * *
4879134 ATTTGGTATTTAAATTTGATATATTTTTT-AAATTTGGTACTTAAATTTTTTTGGCCCA
1 ATTTGGTATGTAAACTTAATATATTTTTTCAAATTTGGTACCT-AATTTTTTTGGCCCA
* *
4879192 ATTTGGTATGTAAACTTAATATTTTTTTTCTAATTTGGTACCTAATTTTTTTGG
1 ATTTGGTATGTAAACTTAATATATTTTTTCAAATTTGGTACCTAATTTTTTTGG
4879246 GCCTAAACTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 36 0.77
59 11 0.23
ACGTcount: A:0.26, C:0.07, G:0.12, T:0.54
Consensus pattern (58 bp):
ATTTGGTATGTAAACTTAATATATTTTTTCAAATTTGGTACCTAATTTTTTTGGCCCA
Found at i:4879769 original size:32 final size:33
Alignment explanation
Indices: 4879723--4879787 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
4879713 GTACCAACTT
* *
4879723 AAAAAAAAGTGTCAAGTTTAGGTATCAAATTAGG
1 AAAAAAAAG-GTCAAGTTTAGATACCAAATTAGG
4879757 AAAAAAAA-GTCAAGTTTAGATACCAAATTAG
1 AAAAAAAAGGTCAAGTTTAGATACCAAATTAG
4879788 ACCAAGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 21 0.72
34 8 0.28
ACGTcount: A:0.51, C:0.08, G:0.17, T:0.25
Consensus pattern (33 bp):
AAAAAAAAGGTCAAGTTTAGATACCAAATTAGG
Found at i:4879843 original size:91 final size:91
Alignment explanation
Indices: 4879677--4879843 Score: 209
Period size: 91 Copynumber: 1.8 Consensus size: 91
4879667 ACAAAAAAAA
* * *
4879677 AAGTTTACGTACCAAATTAGACCCTAAAAAGATTAAGTACCAACTTAAAAAAAAGTGTCAAGTTT
1 AAGTTTACGTACCAAATTAGACCCTAAAAAGATTAAGTACCAAATTAAAAAAAAATATCAAGTTT
*
4879742 AGGTATCAAATTAGGAAAAAAAAGTC
66 AGGTACCAAATTAGGAAAAAAAAGTC
4879768 AAGTTTA-GATACCAAATTAGA-CC-AAGAAA-ATTTAAGTACCAAATTAAGAAAAAAATATCAA
1 AAGTTTACG-TACCAAATTAGACCCTAA-AAAGA-TTAAGTACCAAATTAA-AAAAAAATATCAA
*
4879829 -TTTCAGGTGCCAAAT
62 GTTT-AGGTACCAAAT
4879844 GTTATTTAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
89 3 0.05
90 24 0.36
91 39 0.59
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.25
Consensus pattern (91 bp):
AAGTTTACGTACCAAATTAGACCCTAAAAAGATTAAGTACCAAATTAAAAAAAAATATCAAGTTT
AGGTACCAAATTAGGAAAAAAAAGTC
Found at i:4885987 original size:16 final size:16
Alignment explanation
Indices: 4885966--4885998 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
4885956 ATTGTCATAT
4885966 ACCTCTAAATTTAAGG
1 ACCTCTAAATTTAAGG
4885982 ACCTCTAAATTTAAGG
1 ACCTCTAAATTTAAGG
4885998 A
1 A
4885999 TGGGATGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (16 bp):
ACCTCTAAATTTAAGG
Found at i:4893470 original size:2 final size:2
Alignment explanation
Indices: 4893463--4893490 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4893453 GCATTCATTC
4893463 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4893491 TTACGTTCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4902051 original size:29 final size:29
Alignment explanation
Indices: 4902012--4902132 Score: 89
Period size: 29 Copynumber: 3.7 Consensus size: 29
4902002 CACGTTAACG
*
4902012 TAAGTGACTAAAGTGTAACATTTCAAACA
1 TAAGTAACTAAAGTGTAACATTTCAAACA
* *
4902041 TAAGTAACTAATCAGTGACTAAAATGTTACAACACGT
1 TAAGTAACTAA--AGTG--TAACAT-TT-CAA-AC-A
4902078 TAACGTAAGTGACTAAAGTGTAACATTTCAAACA
1 TAA-GT-A---ACTAAAGTGTAACATTTCAAACA
*
4902112 TAAGTAACTAAAATGTAACAT
1 TAAGTAACTAAAGTGTAACAT
4902133 GACGTAAACA
Statistics
Matches: 73, Mismatches: 6, Indels: 26
0.70 0.06 0.25
Matches are distributed among these distances:
29 24 0.33
31 4 0.05
32 1 0.01
33 7 0.10
34 5 0.07
35 5 0.07
36 5 0.07
37 5 0.07
38 7 0.10
39 1 0.01
40 4 0.05
42 5 0.07
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.27
Consensus pattern (29 bp):
TAAGTAACTAAAGTGTAACATTTCAAACA
Found at i:4902097 original size:71 final size:71
Alignment explanation
Indices: 4901981--4902122 Score: 284
Period size: 71 Copynumber: 2.0 Consensus size: 71
4901971 TATTAATGGC
4901981 TCAGTGACTAAAATGTTACAACACGTTAACGTAAGTGACTAAAGTGTAACATTTCAAACATAAGT
1 TCAGTGACTAAAATGTTACAACACGTTAACGTAAGTGACTAAAGTGTAACATTTCAAACATAAGT
4902046 AACTAA
66 AACTAA
4902052 TCAGTGACTAAAATGTTACAACACGTTAACGTAAGTGACTAAAGTGTAACATTTCAAACATAAGT
1 TCAGTGACTAAAATGTTACAACACGTTAACGTAAGTGACTAAAGTGTAACATTTCAAACATAAGT
4902117 AACTAA
66 AACTAA
4902123 AATGTAACAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (71 bp):
TCAGTGACTAAAATGTTACAACACGTTAACGTAAGTGACTAAAGTGTAACATTTCAAACATAAGT
AACTAA
Found at i:4905520 original size:1 final size:1
Alignment explanation
Indices: 4905514--4905538 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
4905504 ATTAGCTAGG
4905514 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
4905539 ATCTCATTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:4929126 original size:21 final size:23
Alignment explanation
Indices: 4929077--4929126 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
4929067 AAATTTTGTA
4929077 TATTTAA-TATTTTAAATATGTT
1 TATTTAATTATTTTAAATATGTT
*
4929099 TA-ATAATTATTTT-AATAT-TT
1 TATTTAATTATTTTAAATATGTT
4929119 TATTTAAT
1 TATTTAAT
4929127 ATATAGTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
20 4 0.17
21 12 0.50
22 8 0.33
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTTAATTATTTTAAATATGTT
Found at i:4945405 original size:9 final size:10
Alignment explanation
Indices: 4945382--4945425 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 10
4945372 TTCTTTATTA
4945382 AATATTAT-T
1 AATATTATCT
*
4945391 ATTATT-TCT
1 AATATTATCT
4945400 AATATTAT-T
1 AATATTATCT
4945409 AATATTATC-
1 AATATTATCT
4945418 AATATTAT
1 AATATTAT
4945426 TTTTTTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
8 1 0.03
9 28 0.93
10 1 0.03
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (10 bp):
AATATTATCT
Found at i:4945434 original size:18 final size:19
Alignment explanation
Indices: 4945382--4945426 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
4945372 TTCTTTATTA
4945382 AATATTATTATTATT-TCT
1 AATATTATTATTATTATCT
*
4945400 AATATTATTAATATTATC-
1 AATATTATTATTATTATCT
4945418 AATATTATT
1 AATATTATT
4945427 TTTTTTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (19 bp):
AATATTATTATTATTATCT
Found at i:4945632 original size:12 final size:12
Alignment explanation
Indices: 4945617--4945670 Score: 65
Period size: 12 Copynumber: 4.5 Consensus size: 12
4945607 TTATCGTTTC
4945617 TATTATTATATT
1 TATTATTATATT
4945629 TATTATTATATT
1 TATTATTATATT
* *
4945641 TATTATTTTCA-C
1 TATTATTAT-ATT
4945653 TATTATTATATT
1 TATTATTATATT
*
4945665 TTTTAT
1 TATTAT
4945671 CATTATTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
11 1 0.03
12 33 0.94
13 1 0.03
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTATTATATT
Found at i:4945841 original size:15 final size:14
Alignment explanation
Indices: 4945814--4945849 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
4945804 TATATTATGT
4945814 ATATTATTTTTTAA
1 ATATTATTTTTTAA
*
4945828 ATATTATATTTTTAT
1 ATATTAT-TTTTTAA
4945843 ATATTAT
1 ATATTAT
4945850 GTATATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
ATATTATTTTTTAA
Found at i:4945861 original size:22 final size:22
Alignment explanation
Indices: 4945804--4945924 Score: 98
Period size: 22 Copynumber: 5.7 Consensus size: 22
4945794 TAAATACTCT
4945804 TATATTATGTATATTATTTTTTA
1 TATATTATGTATA-TATTTTTTA
4945827 -A-A-TA--T-TATA-TTTTTA
1 TATATTATGTATATATTTTTTA
4945842 TATATTATGTATATATTTTTTTA
1 TATATTATGTATATA-TTTTTTA
* * *
4945865 TCCTATTAT-T-CATATGTTTTA
1 T-ATATTATGTATATATTTTTTA
* *
4945886 TTATATTATGTATATATCTTTAA
1 -TATATTATGTATATATTTTTTA
4945909 TATATTATGTATATAT
1 TATATTATGTATATAT
4945925 ATTATGTACA
Statistics
Matches: 79, Mismatches: 7, Indels: 25
0.71 0.06 0.23
Matches are distributed among these distances:
15 6 0.08
16 3 0.04
17 3 0.04
18 3 0.04
20 3 0.04
21 17 0.22
22 22 0.28
23 16 0.20
24 6 0.08
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.60
Consensus pattern (22 bp):
TATATTATGTATATATTTTTTA
Found at i:4945924 original size:13 final size:13
Alignment explanation
Indices: 4945887--4945999 Score: 63
Period size: 13 Copynumber: 9.5 Consensus size: 13
4945877 TATGTTTTAT
4945887 TATATTATGTATA
1 TATATTATGTATA
*
4945900 TAT-CT-T-TA-A
1 TATATTATGTATA
4945909 TATATTATGTATA
1 TATATTATGTATA
*
4945922 TATATTATGTACA
1 TATATTATGTATA
*
4945935 TA-CTT-T-TA-A
1 TATATTATGTATA
*
4945944 TATTATTATGTATT
1 TA-TATTATGTATA
* *
4945958 TATCTT-T-AATA
1 TATATTATGTATA
4945969 TATA-TATGTATA
1 TATATTATGTATA
4945981 TAT-TTATGTA-A
1 TATATTATGTATA
4945992 TATTATTA
1 TA-TATTA
4946000 ATAATTATTT
Statistics
Matches: 75, Mismatches: 11, Indels: 28
0.66 0.10 0.25
Matches are distributed among these distances:
9 7 0.09
10 6 0.08
11 14 0.19
12 20 0.27
13 26 0.35
14 2 0.03
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (13 bp):
TATATTATGTATA
Found at i:4945926 original size:35 final size:36
Alignment explanation
Indices: 4945887--4945956 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 36
4945877 TATGTTTTAT
*
4945887 TATATTATGTATATA-TCTTTAATA-TATTATGTATA
1 TATATTATGTACATACT-TTTAATATTATTATGTATA
4945922 TATATTATGTACATACTTTTAATATTATTATGTAT
1 TATATTATGTACATACTTTTAATATTATTATGTAT
4945957 TTATCTTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 21 0.66
36 11 0.34
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.54
Consensus pattern (36 bp):
TATATTATGTACATACTTTTAATATTATTATGTATA
Found at i:4945953 original size:23 final size:22
Alignment explanation
Indices: 4945919--4945999 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 22
4945909 TATATTATGT
*
4945919 ATATATATTATGTACATACTTTTA
1 ATAT-TATTATGTATATA-TTTTA
*
4945943 ATATTATTATGTATTTATCTTTA
1 ATATTATTATGTATATAT-TTTA
4945966 ATA-TATATATGTATATATTTATGTA
1 ATATTAT-TATGTATATA-TT-T-TA
4945991 ATATTATTA
1 ATATTATTA
4946000 ATAATTATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.08
23 28 0.58
24 6 0.12
25 7 0.15
26 3 0.06
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (22 bp):
ATATTATTATGTATATATTTTA
Found at i:4945954 original size:58 final size:56
Alignment explanation
Indices: 4945881--4946008 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 56
4945871 TATTCATATG
*
4945881 TTTTATTA-TATTATGTATATATCTTTAATATAT-TATGTATATATATTATGTACATA
1 TTTTAATATTATTATGTATATATCTTTAATATATATATGTATATAT-TTATGTA-ATA
*
4945937 CTTTTAATATTATTATGTATTTATCTTTAATATATATATGTATATATTTATGTAATA
1 -TTTTAATATTATTATGTATATATCTTTAATATATATATGTATATATTTATGTAATA
4945994 TTATTAATAATTATT
1 TT-TTAAT-ATTATT
4946009 TTTTAACATT
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
56 2 0.03
57 15 0.23
58 37 0.57
59 11 0.17
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (56 bp):
TTTTAATATTATTATGTATATATCTTTAATATATATATGTATATATTTATGTAATA
Found at i:4946081 original size:23 final size:23
Alignment explanation
Indices: 4946055--4946131 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
4946045 TTTTATATGC
4946055 TTTTATATATATCATGTATATTT
1 TTTTATATATATCATGTATATTT
*
4946078 TTTTA-ATATTATTA-GTTATATATT
1 TTTTATATA-TATCATG-TATAT-TT
* * *
4946102 TTTTATACTATTTCATATATATAT
1 TTTTATA-TATATCATGTATATTT
4946126 TTTTAT
1 TTTTAT
4946132 GTTATCCTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
22 4 0.09
23 14 0.33
24 14 0.33
25 9 0.21
26 2 0.05
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (23 bp):
TTTTATATATATCATGTATATTT
Found at i:4946186 original size:21 final size:20
Alignment explanation
Indices: 4946154--4946194 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
4946144 ATTATTATTG
* *
4946154 GTATATGTTTTATTATATAT
1 GTATATATTTTAATATATAT
4946174 GTATATATCTTTAATATATAT
1 GTATATAT-TTTAATATATAT
4946195 TTATGTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
GTATATATTTTAATATATAT
Found at i:4946333 original size:75 final size:79
Alignment explanation
Indices: 4946241--4946394 Score: 183
Period size: 83 Copynumber: 1.9 Consensus size: 79
4946231 TATTTCTAAT
*
4946241 ATGTATATATTATGAATAC-AT-TTTTTTATATATATTA-CGTATATATATATTTTAAT-ATTAT
1 ATGTATATATTATGAATACTATATTTTTTATACATATTATCGTATATATATATTTTAATAATTAT
*
4946302 ATTTTATATATATC
66 ATTATATATATATC
* *
4946316 ATGTATATATT-TCGAATACTATATTATATTTTTTTTACATATTATCTTATATATATATTTTAAT
1 ATGTATATATTAT-GAATAC-----TATATTTTTTATACATATTATCGTATATATATATTTTAAT
4946380 AATTATATTATATAT
60 AATTATATTATATAT
4946395 GTATTTTTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
74 1 0.02
75 17 0.26
81 2 0.03
82 14 0.22
83 18 0.28
84 13 0.20
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (79 bp):
ATGTATATATTATGAATACTATATTTTTTATACATATTATCGTATATATATATTTTAATAATTAT
ATTATATATATATC
Found at i:4946376 original size:25 final size:25
Alignment explanation
Indices: 4946295--4946401 Score: 77
Period size: 25 Copynumber: 4.5 Consensus size: 25
4946285 ATATATTTTA
*
4946295 ATAT-TATATTTT-AT-A-TATATC
1 ATATATATATTTTAATAATTATATT
* * *
4946316 ATGTATATATTTCGAAT-ACTATATT
1 ATATATATATTT-TAATAATTATATT
* *
4946341 ATAT-T-TTTTTTACAT-ATTATCTT
1 ATATATATATTTTA-ATAATTATATT
4946364 ATATATATATTTTAATAATTATATT
1 ATATATATATTTTAATAATTATATT
*
4946389 ATATATGTATTTT
1 ATATATATATTTT
4946402 TAACGCCATA
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
21 3 0.04
22 8 0.12
23 16 0.24
24 7 0.10
25 33 0.49
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.57
Consensus pattern (25 bp):
ATATATATATTTTAATAATTATATT
Found at i:4948449 original size:94 final size:90
Alignment explanation
Indices: 4948339--4948648 Score: 304
Period size: 94 Copynumber: 3.3 Consensus size: 90
4948329 AGAGCCAATA
* * *
4948339 TAAGACCATGTTTGGGACATGGCATCGGCATTAAGACAAGGGCTAGTGTAAGACATGT-TCGGGG
1 TAAGACCATGTCTGGGACATGGCATCGGC--TAAGAC-AGTGCTAGTGTAAGACATGTCT-GGGA
4948403 CATGCATCAGCCACATTAAGATAGCCAGTG
62 CATGCATC-GCCACATTAAGATAGCCAGTG
* * *
4948433 TAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACATGTCTAGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGC-TA-AGA-CAGTGCTAGTGTAAGACATGTCTGGGAC
* * *
4948498 ATGCATCGGCCTCGATGATGATAGCCAGTG
63 ATGCATC-GCCAC-ATTAAGATAGCCAGTG
* * * *
4948528 TAAGA-CGTATCTGGGACAT-ACATCGGCTAAGTTTCA-TGCTAGTGTAAGACATGTCTGGGACA
1 TAAGACCATGTCTGGGACATGGCATCGGCTAAG--ACAGTGCTAGTGTAAGACATGTCTGGGACA
* * * *
4948590 TGCATCGACACGTATACACGAAAGCTAGTG
64 TGCATCGCCACAT-TA-A-GATAGCCAGTG
4948620 TAAGACCATGTCTGGGACATGGCATCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
4948649 CTCGATGGAG
Statistics
Matches: 177, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
89 1 0.01
90 4 0.02
91 32 0.18
92 17 0.10
93 21 0.12
94 82 0.46
95 20 0.11
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (90 bp):
TAAGACCATGTCTGGGACATGGCATCGGCTAAGACAGTGCTAGTGTAAGACATGTCTGGGACATG
CATCGCCACATTAAGATAGCCAGTG
Found at i:4948672 original size:49 final size:47
Alignment explanation
Indices: 4948383--4948685 Score: 230
Period size: 47 Copynumber: 6.4 Consensus size: 47
4948373 GACAAGGGCT
* * * * *
4948383 AGTGTAAGACATGT-TCGGGGCATGCATCAGCCAC-ATTAAGATAGCC
1 AGTGTAAGACATGTCT-GGGACATGCATCGGCCTCGATGATGATAGCC
* *
4948429 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGA-GATGAGT-GCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA-TAGCC
*
4948477 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCC
* * * * * * *
4948524 AGTGTAAGACGTATCTGGGACATACATCGG-CT--AAGTTTCAT-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATG-ATGATAGCC
* * * * * *
4948568 AGTGTAAGACATGTCTGGGACATGCATC-GACACGTATACACGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-AT-GATGATAGCC
4948616 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA-GATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAT-GATGATAGCC
* *
4948665 AGCGTAAGACCATGTTTGGGA
1 AGTGTAAGA-CATGTCTGGGA
4948686 TATGGCAACA
Statistics
Matches: 204, Mismatches: 36, Indels: 31
0.75 0.13 0.11
Matches are distributed among these distances:
43 1 0.00
44 30 0.15
45 3 0.01
46 23 0.11
47 60 0.29
48 35 0.17
49 40 0.20
50 8 0.04
51 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCC
Found at i:4953107 original size:23 final size:21
Alignment explanation
Indices: 4953055--4953129 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
4953045 CCTGATCAGT
** *
4953055 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTA
*
4953076 AAACGACACACGAGGTGCCTA
1 ATACGACACACGAGGTGCCTA
4953097 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCT--A
4953120 ATACGACACA
1 ATACGACACA
4953130 TAAAGTGCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 36 0.77
23 11 0.23
ACGTcount: A:0.40, C:0.27, G:0.20, T:0.13
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTA
Found at i:4953141 original size:23 final size:22
Alignment explanation
Indices: 4953055--4953139 Score: 93
Period size: 21 Copynumber: 3.9 Consensus size: 22
4953045 CCTGATCAGT
*
4953055 ATACGACACATAAAGTGCCTAA
1 ATACGACACACAAAGTGCCTAA
* *
4953077 A-ACGACACACGAGGTGCCT-A
1 ATACGACACACAAAGTGCCTAA
* *
4953097 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCT-AA
*
4953120 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
4953140 GATCGATAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
20 2 0.04
21 33 0.61
22 1 0.02
23 18 0.33
ACGTcount: A:0.39, C:0.26, G:0.20, T:0.15
Consensus pattern (22 bp):
ATACGACACACAAAGTGCCTAA
Found at i:4953859 original size:5 final size:5
Alignment explanation
Indices: 4953846--4953882 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
4953836 TTTTTTAGTT
4953846 TATATA TATAA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA T
4953883 TAAAACATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:4953913 original size:3 final size:3
Alignment explanation
Indices: 4953907--4953947 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
4953897 TCTTTATTAT
4953907 ATA ATA AT- ATA ATA AT- ATA ATA AT- ATA ATA AT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4953948 TACTAAACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 8 0.24
3 26 0.76
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:4953918 original size:8 final size:8
Alignment explanation
Indices: 4953905--4953949 Score: 90
Period size: 8 Copynumber: 5.6 Consensus size: 8
4953895 TATCTTTATT
4953905 ATATAATA
1 ATATAATA
4953913 ATATAATA
1 ATATAATA
4953921 ATATAATA
1 ATATAATA
4953929 ATATAATA
1 ATATAATA
4953937 ATATAATA
1 ATATAATA
4953945 ATATA
1 ATATA
4953950 CTAAACATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 37 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:4956907 original size:28 final size:28
Alignment explanation
Indices: 4956867--4956924 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
4956857 GTAAGTTCAA
4956867 TTCTTGATTATTTCTTGAAATTTTTGTG
1 TTCTTGATTATTTCTTGAAATTTTTGTG
4956895 TTCTTGATTATTTCTTGAAATTTTTGTG
1 TTCTTGATTATTTCTTGAAATTTTTGTG
4956923 TT
1 TT
4956925 TTTGTGACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.17, C:0.07, G:0.14, T:0.62
Consensus pattern (28 bp):
TTCTTGATTATTTCTTGAAATTTTTGTG
Found at i:4962702 original size:41 final size:41
Alignment explanation
Indices: 4962631--4962719 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 41
4962621 TTCACATGAT
* * * *
4962631 TAATAATGTGGACATGAGCATGGGAGTTCCATCATTGGTGGC
1 TAAT-ATGTAGACATGACCATGGGAATTCCACCATTGGTGGC
*
4962673 TGATATGTAGACATGACCATGGGAATTCCACCATTGGTGGC
1 TAATATGTAGACATGACCATGGGAATTCCACCATTGGTGGC
4962714 TAATAT
1 TAATAT
4962720 CCAATATTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 38 0.93
42 3 0.07
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (41 bp):
TAATATGTAGACATGACCATGGGAATTCCACCATTGGTGGC
Found at i:4963640 original size:18 final size:19
Alignment explanation
Indices: 4963617--4963653 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
4963607 GAGCAATAAT
4963617 TTTAAT-TTTTTTATAACA
1 TTTAATATTTTTTATAACA
4963635 TTTAATAATTTTTTATAAC
1 TTTAAT-ATTTTTTATAAC
4963654 TTGTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTAATATTTTTTATAACA
Found at i:4963959 original size:29 final size:28
Alignment explanation
Indices: 4963926--4964005 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 28
4963916 TATAATTTCC
4963926 TTATATATTTTTAAAATTTTTACAACTTT
1 TTATA-ATTTTTAAAATTTTTACAACTTT
* ** *
4963955 TTATACTTTCAAAAAGTTTTTATAACTTT
1 TTATAATTTTTAAAA-TTTTTACAACTTT
*
4963984 TTATAAATTTTTATAGATTTTT
1 TTAT-AATTTTTA-AAATTTTT
4964006 TTATCATTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
28 7 0.17
29 21 0.52
30 10 0.25
31 2 0.05
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (28 bp):
TTATAATTTTTAAAATTTTTACAACTTT
Found at i:4964004 original size:9 final size:10
Alignment explanation
Indices: 4963926--4964005 Score: 58
Period size: 10 Copynumber: 8.2 Consensus size: 10
4963916 TATAATTTCC
*
4963926 TTATATATTT
1 TTATAAATTT
4963936 TTA-AAATTT
1 TTATAAATTT
* *
4963945 TTACAACTTT
1 TTATAAATTT
*
4963955 TTAT--ACTT
1 TTATAAATTT
* *
4963963 TCAAAAAGTTT
1 TTATAAA-TTT
*
4963974 TTATAACTTT
1 TTATAAATTT
4963984 TTATAAATTT
1 TTATAAATTT
*
4963994 TTATAGATTT
1 TTATAAATTT
4964004 TT
1 TT
4964006 TTATCATTTT
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
8 4 0.08
9 8 0.15
10 35 0.66
11 6 0.11
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (10 bp):
TTATAAATTT
Found at i:4964016 original size:30 final size:30
Alignment explanation
Indices: 4963989--4964057 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
4963979 ACTTTTTATA
* *
4963989 AATTTTTATAGATTTTTTTATCATTTTAAT
1 AATTTTTATAGAATTTTCTATCATTTTAAT
* *
4964019 TATTTTTATATAATTTTCTATCATTTCTAAT
1 AATTTTTATAGAATTTTCTATCATTT-TAAT
*
4964050 -TTTTTTAT
1 AATTTTTAT
4964058 CATTATTTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 29 0.88
31 4 0.12
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (30 bp):
AATTTTTATAGAATTTTCTATCATTTTAAT
Found at i:4964026 original size:18 final size:17
Alignment explanation
Indices: 4964000--4964061 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 17
4963990 ATTTTTATAG
4964000 ATTTTTTTATCATTTTA
1 ATTTTTTTATCATTTTA
4964017 ATTATTTTTAT-A---TA
1 ATT-TTTTTATCATTTTA
*
4964031 A-TTTTCTATCATTTCTA
1 ATTTTTTTATCATTT-TA
4964048 ATTTTTTTATCATT
1 ATTTTTTTATCATT
4964062 ATTTCATAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
12 6 0.17
13 2 0.06
14 3 0.08
17 7 0.19
18 18 0.50
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTTTTATCATTTTA
Found at i:4964122 original size:27 final size:28
Alignment explanation
Indices: 4964077--4964141 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 28
4964067 ATAACATATA
4964077 AATAATGTTTTATAAAATTTAAT-ATTTTT
1 AATAAT-TTTTATAAAATTT-ATGATTTTT
* *
4964106 TATATTTTTTA-AAAATTTATGATTTTT
1 AATAATTTTTATAAAATTTATGATTTTT
4964133 AATAATTTT
1 AATAATTTT
4964142 GATAGATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 2 0.06
27 20 0.65
28 5 0.16
29 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (28 bp):
AATAATTTTTATAAAATTTATGATTTTT
Found at i:4964131 original size:17 final size:16
Alignment explanation
Indices: 4964111--4964144 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
4964101 TTTTTTATAT
4964111 TTTTTAAAAATTTATGA
1 TTTTTAAAAATTT-TGA
*
4964128 TTTTTAATAATTTTGA
1 TTTTTAAAAATTTTGA
4964144 T
1 T
4964145 AGATTTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTTTAAAAATTTTGA
Found at i:4967051 original size:15 final size:15
Alignment explanation
Indices: 4967033--4967062 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4967023 GAAGCAGAAC
*
4967033 AAGAAGATGAAGGAG
1 AAGAAGAAGAAGGAG
4967048 AAGAAGAAGAAGGAG
1 AAGAAGAAGAAGGAG
4967063 CCATGGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.40, T:0.03
Consensus pattern (15 bp):
AAGAAGAAGAAGGAG
Found at i:4968621 original size:2 final size:2
Alignment explanation
Indices: 4968614--4968646 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4968604 AGCAACTAGG
4968614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4968647 ATTGATGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4973381 original size:39 final size:39
Alignment explanation
Indices: 4973335--4973409 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
4973325 ACACTTATCT
4973335 GATCAAGGACAAATGAAAGTGATAAGTAATAGCTTCGGC
1 GATCAAGGACAAATGAAAGTGATAAGTAATAGCTTCGGC
4973374 GATCAAGGACAAATGAAAGTGATAAGTAATAGCTTC
1 GATCAAGGACAAATGAAAGTGATAAGTAATAGCTTC
4973410 AGCTACACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.21
Consensus pattern (39 bp):
GATCAAGGACAAATGAAAGTGATAAGTAATAGCTTCGGC
Found at i:4973456 original size:50 final size:50
Alignment explanation
Indices: 4973374--4973508 Score: 200
Period size: 50 Copynumber: 2.7 Consensus size: 50
4973364 TAGCTTCGGC
* *
4973374 GATCAAGGACAAATGAAAGTGATAAGTAATAGCTTCAGCTACACTTATCT
1 GATCAAGGACAAATGAAAGTGAAAAGTGATAGCTTCAGCTACACTTATCT
*
4973424 GATCAAGGA-AAAGTGAAAGTGAAAAGTGATAGCTTCGGCTACACTTATCT
1 GATCAAGGACAAA-TGAAAGTGAAAAGTGATAGCTTCAGCTACACTTATCT
* *
4973474 GATCAATGACAAATGACAAGTGAAAAGTGGTAGCT
1 GATCAAGGACAAATGA-AAGTGAAAAGTGATAGCT
4973509 CCGGCTACCT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
49 3 0.04
50 54 0.70
51 20 0.26
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (50 bp):
GATCAAGGACAAATGAAAGTGAAAAGTGATAGCTTCAGCTACACTTATCT
Found at i:4973530 original size:31 final size:31
Alignment explanation
Indices: 4973492--4973609 Score: 200
Period size: 31 Copynumber: 3.8 Consensus size: 31
4973482 ACAAATGACA
4973492 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
4973523 AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
4973554 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
4973585 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
4973610 AAGTGACAAG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:4973796 original size:42 final size:43
Alignment explanation
Indices: 4973729--4973842 Score: 151
Period size: 42 Copynumber: 2.7 Consensus size: 43
4973719 ATGTGATTCA
* * *
4973729 TGTAAGACCATAGCTAGGCTCTGGCATCGA-TATATGAATATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
*
4973771 TGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
* **
4973813 TGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTAAGACCATAGCTGGGCTATGGCATCGA
4973843 GAAAACGAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 1 0.02
42 61 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
Found at i:4977573 original size:46 final size:44
Alignment explanation
Indices: 4977469--4977576 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
4977459 TGTCTTTGAC
** * * *
4977469 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
4977513 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
4977559 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
4977577 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:4985825 original size:13 final size:14
Alignment explanation
Indices: 4985807--4985840 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
4985797 TTGAAGTTTG
4985807 ATTATTATT-ATTT
1 ATTATTATTAATTT
4985820 ATTATTATTAATTT
1 ATTATTATTAATTT
*
4985834 CTTATTA
1 ATTATTA
4985841 AGTAGAAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
ATTATTATTAATTT
Found at i:4987504 original size:19 final size:19
Alignment explanation
Indices: 4987468--4987509 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
4987458 AAAAATTATA
* *
4987468 AAAATAACTTTATGTATTT
1 AAAATAAATTTATGTATTC
4987487 AAAATAAATTATAT-TATTC
1 AAAATAAATT-TATGTATTC
4987506 AAAA
1 AAAA
4987510 ATATTTTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAATAAATTTATGTATTC
Found at i:4993987 original size:14 final size:14
Alignment explanation
Indices: 4993968--4993997 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
4993958 AAAACAATAA
4993968 TAGTTAAATTCATT
1 TAGTTAAATTCATT
4993982 TAGTTAAATTCATT
1 TAGTTAAATTCATT
4993996 TA
1 TA
4993998 CTAGTCATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
TAGTTAAATTCATT
Found at i:4997353 original size:19 final size:19
Alignment explanation
Indices: 4997329--4997365 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4997319 TATCAATCTC
4997329 TTTAAAAAAAAGTAATGTT
1 TTTAAAAAAAAGTAATGTT
*
4997348 TTTAAAAAAAGGTAATGT
1 TTTAAAAAAAAGTAATGT
4997366 AACAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.35
Consensus pattern (19 bp):
TTTAAAAAAAAGTAATGTT
Found at i:4998171 original size:29 final size:29
Alignment explanation
Indices: 4998106--4998177 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 29
4998096 TTGTCTAAAA
* *
4998106 GTACTTAGTTGGTATATGAACTTTTTTTT
1 GTACTTAGTTGGTACATAAACTTTTTTTT
*
4998135 -TACTTAGTTGGTACCTAAACTTTTTTTT
1 GTACTTAGTTGGTACATAAACTTTTTTTT
*
4998163 GTACCTAGTTGGTAC
1 GTACTTAGTTGGTAC
4998178 TTGACTTGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 25 0.66
29 13 0.34
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.50
Consensus pattern (29 bp):
GTACTTAGTTGGTACATAAACTTTTTTTT
Found at i:5010892 original size:32 final size:32
Alignment explanation
Indices: 5010856--5010919 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
5010846 GATAGTCACA
*
5010856 AATGGCCTCAAATAAAGAAAACAATTTTTTTC
1 AATGGCATCAAATAAAGAAAACAATTTTTTTC
5010888 AATGGCATCAAATAAAGAAAACAATTTTTTTC
1 AATGGCATCAAATAAAGAAAACAATTTTTTTC
5010920 TTACTACAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.31
Consensus pattern (32 bp):
AATGGCATCAAATAAAGAAAACAATTTTTTTC
Found at i:5014435 original size:36 final size:36
Alignment explanation
Indices: 5014388--5014461 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
5014378 CTAGTAAAAT
* *
5014388 TAATAATAAAATAAG-AGTTATACAATA-TCCAAATAA
1 TAATAACAAAAT-AGTAGTAATACAATAGT-CAAATAA
*
5014424 TAATAACAAAATAGTAGTAATATAATAGTCAAATAA
1 TAATAACAAAATAGTAGTAATACAATAGTCAAATAA
5014460 TA
1 TA
5014462 GCAAAATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 2 0.06
36 30 0.91
37 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (36 bp):
TAATAACAAAATAGTAGTAATACAATAGTCAAATAA
Found at i:5017259 original size:77 final size:77
Alignment explanation
Indices: 5017157--5017300 Score: 218
Period size: 77 Copynumber: 1.9 Consensus size: 77
5017147 AAAAAAAAAA
* * * *
5017157 AAAAAACCTTGAAAAAAGAGACGAAAAGTTTGCTGTTGATCCAAGGCAACTAGAAAGATAACAAT
1 AAAAAACCTTGAAAAAAAAGACGAAAAGTTCGCCGTTGATCCAAGGCAACTACAAAGATAACAAT
5017222 GAGAAAACCTCT
66 GAGAAAACCTCT
* *
5017234 AAAAAA-CTTGAAAAAAAAAGACGAAAAGTTCGCCGTTGGTCCGAGGCAACTACAAAGATAACAA
1 AAAAAACCTTG-AAAAAAAAGACGAAAAGTTCGCCGTTGATCCAAGGCAACTACAAAGATAACAA
5017298 TGA
65 TGA
5017301 AAATAAGTCA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
76 4 0.07
77 56 0.93
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.17
Consensus pattern (77 bp):
AAAAAACCTTGAAAAAAAAGACGAAAAGTTCGCCGTTGATCCAAGGCAACTACAAAGATAACAAT
GAGAAAACCTCT
Found at i:5021616 original size:39 final size:39
Alignment explanation
Indices: 5021495--5021617 Score: 110
Period size: 39 Copynumber: 3.2 Consensus size: 39
5021485 ACTTAAATAG
*
5021495 AAAATAGAAAAACTGAAACAAACCACTAAAAATCTAGAA
1 AAAATAGAAAAACTGAAACAAACCATTAAAAATCTAGAA
* * * * **
5021534 AAATTA-AAAAAGCTGAAAAAAAATCATAAGCAAAAAAT-G--
1 AAAATAGAAAAA-CTG-AAACAAACCATTA--AAAATCTAGAA
*
5021573 AAAATAGAAAAACTGAAACCAACCATTAAAAATCTAGAA
1 AAAATAGAAAAACTGAAACAAACCATTAAAAATCTAGAA
5021612 AAAATA
1 AAAATA
5021618 TTAGGAAAAA
Statistics
Matches: 62, Mismatches: 14, Indels: 16
0.67 0.15 0.17
Matches are distributed among these distances:
36 5 0.08
37 1 0.02
38 14 0.23
39 22 0.35
40 14 0.23
41 1 0.02
42 5 0.08
ACGTcount: A:0.65, C:0.12, G:0.08, T:0.15
Consensus pattern (39 bp):
AAAATAGAAAAACTGAAACAAACCATTAAAAATCTAGAA
Found at i:5027918 original size:31 final size:30
Alignment explanation
Indices: 5027877--5027949 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
5027867 TTATTTTTTT
* * *
5027877 AAGTTAAATTTGACTC-TCAATATTTTGAAAA
1 AAGTTGAATTTGAC-CATCAAT-CTTTCAAAA
5027908 AAGTTGAATTTGACCATCAATCTTTCAAAA
1 AAGTTGAATTTGACCATCAATCTTTCAAAA
5027938 AGAGTTGAATTT
1 A-AGTTGAATTT
5027950 TTTTTAAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 9 0.24
31 28 0.76
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (30 bp):
AAGTTGAATTTGACCATCAATCTTTCAAAA
Found at i:5030415 original size:15 final size:16
Alignment explanation
Indices: 5030395--5030427 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
5030385 ATATATATAT
5030395 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
5030410 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
5030427 T
1 T
5030428 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:5030513 original size:22 final size:22
Alignment explanation
Indices: 5030474--5030532 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
5030464 GTTTTAAGAA
*
5030474 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
5030495 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
5030517 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
5030533 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:5030549 original size:26 final size:24
Alignment explanation
Indices: 5030503--5030562 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
5030493 ATTTGTTTTA
*
5030503 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
5030527 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
5030553 TTTTTTATTT
1 ATATTTATTT
5030563 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:5031054 original size:20 final size:21
Alignment explanation
Indices: 5031010--5031055 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
5031000 TTTTTACGCA
*
5031010 TTAT-TTATTTTAAGCTTATT
1 TTATATTATCTTAAGCTTATT
*
5031030 ATATATTATCTTAAG-TTATT
1 TTATATTATCTTAAGCTTATT
5031050 TTATAT
1 TTATAT
5031056 ATTATCTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (21 bp):
TTATATTATCTTAAGCTTATT
Found at i:5031076 original size:21 final size:21
Alignment explanation
Indices: 5031027--5031087 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
5031017 TTTTAAGCTT
** *
5031027 ATTATATATTATCTTAAGTTAT
1 ATTATATATTATC-TATTTTAA
*
5031049 TTTATATATTATCTATTTTAA
1 ATTATATATTATCTATTTTAA
5031070 ATTATATATATAT-TATTT
1 ATTATATAT-TATCTATTT
5031088 AGTCTAAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTATATATTATCTATTTTAA
Found at i:5031209 original size:28 final size:26
Alignment explanation
Indices: 5031164--5031233 Score: 72
Period size: 28 Copynumber: 2.7 Consensus size: 26
5031154 CCTTTTTCAC
* *
5031164 ATATTATTTA-TT-AATTTTTTATAT
1 ATATTATTTATTTAAATTTTGTACAT
5031188 ATATTATTTATTGTAAACTTTTGTACAT
1 ATATTATTTATT-TAAA-TTTTGTACAT
*
5031216 ATATTATCTATTTTAAAT
1 ATATTATTTA-TTTAAAT
5031234 CTATATATGT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
24 10 0.26
25 1 0.03
26 1 0.03
27 3 0.08
28 21 0.55
29 2 0.05
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (26 bp):
ATATTATTTATTTAAATTTTGTACAT
Found at i:5031388 original size:19 final size:19
Alignment explanation
Indices: 5031343--5031381 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
5031333 TTTTTTTGTA
*
5031343 TATATTACTTATTTTAAAT
1 TATATTATTTATTTTAAAT
5031362 TATATTATTTATTTTAAAT
1 TATATTATTTATTTTAAAT
5031381 T
1 T
5031382 GTTTTATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
TATATTATTTATTTTAAAT
Found at i:5034249 original size:39 final size:39
Alignment explanation
Indices: 5034182--5034282 Score: 130
Period size: 39 Copynumber: 2.5 Consensus size: 39
5034172 TAGTGACTAC
* * *
5034182 ATCCGGGCTAAAACCCGAAGGCATTTGTGCAAATTGTGAT
1 ATCCGGGCT-AAGCCCGAAGGCAATTGTGCAAATTGCGAT
* *
5034222 ATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGCGAT
1 ATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGCGAT
*
5034261 ATCCGGGTTAAGTCCCGAAGGC
1 ATCCGGGCTAAG-CCCGAAGGC
5034283 CTTGGTGCGG
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.67
40 18 0.33
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGCGAT
Found at i:5034291 original size:40 final size:39
Alignment explanation
Indices: 5034139--5034322 Score: 149
Period size: 40 Copynumber: 4.6 Consensus size: 39
5034129 ACAATTGAAT
* *
5034139 GATATCCGGGCTAAGTCCCG-AGGACATTTATGCTAG-TGAC
1 GATATCCGGGCTAAGTCCCGAAGG-CA-TTGTGCGAGTTG-C
* * ** * * *
5034179 TACATCCGGGCTAAAACCCGAAGGCATTTGTGCAAATTGT
1 GATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTGC
5034219 GATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGC
1 GATATCCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTGC
* * * *
5034258 GATATCCGGGTTAAGTCCCGAAGGCCTTGGTGCGGGTTAC
1 GATATCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTGC
* * *
5034298 CATAACCGGGCTATGTCCCGAAGGC
1 GATATCCGGGCTAAGTCCCGAAGGC
5034323 GTTTGAACGA
Statistics
Matches: 117, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
39 35 0.30
40 77 0.66
41 5 0.04
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (39 bp):
GATATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTGC
Found at i:5037024 original size:21 final size:21
Alignment explanation
Indices: 5037012--5037100 Score: 74
Period size: 22 Copynumber: 4.1 Consensus size: 21
5037002 TAAATAACAG
5037012 TATTAGAAATATATAATATAA
1 TATTAGAAATATATAATATAA
* * *
5037033 TATTAGAAGTATA-CATATAG
1 TATTAGAAATATATAATATAA
* * *
5037053 TAGTATAAAAATATAACTAGTAA
1 TATTAGAAATATATAA-TA-TAA
5037076 TATTA-AAATATATATATATATA
1 TATTAGAAATATATA-ATATA-A
5037098 TAT
1 TAT
5037101 ATAATATATA
Statistics
Matches: 52, Mismatches: 11, Indels: 9
0.72 0.15 0.12
Matches are distributed among these distances:
20 14 0.27
21 15 0.29
22 16 0.31
23 7 0.13
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (21 bp):
TATTAGAAATATATAATATAA
Found at i:5037083 original size:20 final size:20
Alignment explanation
Indices: 5037050--5037087 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5037040 AGTATACATA
*
5037050 TAGTAGTATAAAAATATAAC
1 TAGTAATATAAAAATATAAC
*
5037070 TAGTAATATTAAAATATA
1 TAGTAATATAAAAATATA
5037088 TATATATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (20 bp):
TAGTAATATAAAAATATAAC
Found at i:5037098 original size:20 final size:20
Alignment explanation
Indices: 5037012--5037111 Score: 71
Period size: 21 Copynumber: 4.8 Consensus size: 20
5037002 TAAATAACAG
5037012 TATTAGAAATATATA-ATATAA
1 TATTA-AAATATATATATAT-A
* *
5037033 TATTAGAAGTATACATATAGTA
1 TATTA-AAATATATATATA-TA
*
5037055 GTATAAAAATATA-ACTAGTA-A
1 -TATTAAAATATATA-TA-TATA
5037076 TATTAAAATATATATATATA
1 TATTAAAATATATATATATA
*
5037096 TATATATAATATATAT
1 TAT-TAAAATATATAT
5037112 TAAAAGACTT
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
19 2 0.03
20 17 0.26
21 27 0.42
22 12 0.18
23 7 0.11
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (20 bp):
TATTAAAATATATATATATA
Found at i:5037128 original size:2 final size:2
Alignment explanation
Indices: 5037083--5037111 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
5037073 TAATATTAAA
5037083 AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5037112 TAAAAGACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5037906 original size:14 final size:15
Alignment explanation
Indices: 5037878--5037907 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
5037868 ATTTTAAAAA
5037878 AAAAGAGAGAGAGGG
1 AAAAGAGAGAGAGGG
5037893 AAAAGAGA-AGAGGG
1 AAAAGAGAGAGAGGG
5037907 A
1 A
5037908 GAGAAGGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (15 bp):
AAAAGAGAGAGAGGG
Found at i:5038691 original size:23 final size:23
Alignment explanation
Indices: 5038659--5038703 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
5038649 TCTGGGTTTT
5038659 GGGGTTTGGGTCT-GGTTGTAAA
1 GGGGTTTGGGTCTAGGTTGTAAA
*
5038681 GGGGTATTGGGTCTAGTTTGTAA
1 GGGGT-TTGGGTCTAGGTTGTAA
5038704 TGGGTCAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 8 0.40
24 7 0.35
ACGTcount: A:0.16, C:0.04, G:0.42, T:0.38
Consensus pattern (23 bp):
GGGGTTTGGGTCTAGGTTGTAAA
Found at i:5039216 original size:13 final size:13
Alignment explanation
Indices: 5039198--5039222 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5039188 TTTGAAACAT
5039198 AGAAATTAAAAGC
1 AGAAATTAAAAGC
5039211 AGAAATTAAAAG
1 AGAAATTAAAAG
5039223 GCTCAACTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.16, T:0.16
Consensus pattern (13 bp):
AGAAATTAAAAGC
Found at i:5039585 original size:71 final size:71
Alignment explanation
Indices: 5039357--5039676 Score: 329
Period size: 71 Copynumber: 4.5 Consensus size: 71
5039347 TTAAAAAGAC
* * * * *
5039357 TCAACTCACCTCTCGCAATATGAA-TTGAATTTTGAAA-ATAGGATTTGAAAATACCTTAGCGTG
1 TCAACTCACCTCTCGCAATAT-AAGTTGATTTTTGAAACATA--AATTGAAATTACCTCAACGTG
* *** **
5039420 CCGCAAGAC
63 TCTTGAGGT
* * ** * *
5039429 TCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTAACAGGAATTGAAATTACCCCAGCGTG
1 TCAACTCACCTCTCGCAATATAAGTTGATTTTTGA---AACATAAATTGAAATTACCTCAACGTG
* **
5039494 CCCCGAGGT
63 TCTTGAGGT
*
5039503 TCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
5039568 TGAGGT
66 TGAGGT
* * *
5039574 TCAACTTACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAATGTGTCT
1 TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
*
5039639 TGAGGC
66 TGAGGT
* *
5039645 TCAACTCACCTCTCGCAATATGAGCTGATTTT
1 TCAACTCACCTCTCGCAATATAAGTTGATTTT
5039677 CTTGGAAAAC
Statistics
Matches: 213, Mismatches: 30, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
71 126 0.59
72 30 0.14
74 54 0.25
75 2 0.01
76 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
TGAGGT
Found at i:5039807 original size:160 final size:160
Alignment explanation
Indices: 5039543--5040458 Score: 1013
Period size: 160 Copynumber: 5.8 Consensus size: 160
5039533 TTTGAAACAT
* * * * * *
5039543 AAATTGAAATTACCTCAACGTGTCTTGAGGTTCAACTTACTTCTCGCAATATAAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
*
5039608 AAACATAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
66 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
5039673 TTTTCTTGGAAAACATGAATTAAAAAGCAG
131 TTTTCTTGGAAAACATGAATTAAAAAGCAG
* * *
5039703 AAATTGAAAATACCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
5039768 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
66 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
5039833 TTTTCTTGGAAAACATGAATTAAAAAGCAG
131 TTTTCTTGGAAAACATGAATTAAAAAGCAG
* * *
5039863 AAATTGAAAATACCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
* *
5039928 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGA
66 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
*
5039993 -TTT-TT-G-AAACATAAATT------C--
131 TTTTCTTGGAAAACATGAATTAAAAAGCAG
* * * * * *
5040011 AAA-T-----TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGA-TTT-T
* * ** ** * * *
5040070 TGGAAAACATGAATTAAAAAGCAGAAATTGAAAATATCTCGGCGTACCCTGAGGTTCAACTCACT
64 T-G-AAAC----A-T---------AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACC
* *
5040135 TCTCGCAATATAAGTTGA-TTT-TT-G-AAAC----A-T---------
113 TCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAG
* * * * * * *
5040165 AAATTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAAGATAAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
* *
5040230 AAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGCTGA
66 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
5040295 TTTTCTTGGAAAACATGAATTAAAAAGCAG
131 TTTTCTTGGAAAACATGAATTAAAAAGCAG
*
5040325 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
* *
5040390 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGA
66 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
5040455 TTTT
131 TTTT
5040459 TGAAACATAA
Statistics
Matches: 654, Mismatches: 60, Indels: 84
0.82 0.08 0.11
Matches are distributed among these distances:
142 86 0.13
143 6 0.01
144 4 0.01
145 2 0.00
146 8 0.01
147 1 0.00
148 3 0.00
150 3 0.00
151 3 0.00
152 1 0.00
154 3 0.00
155 2 0.00
156 15 0.02
157 2 0.00
158 4 0.01
159 6 0.01
160 505 0.77
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (160 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
TTTTCTTGGAAAACATGAATTAAAAAGCAG
Found at i:5039940 original size:231 final size:231
Alignment explanation
Indices: 5039728--5040694 Score: 1754
Period size: 231 Copynumber: 4.2 Consensus size: 231
5039718 CGGCGTACCC
* * * * *
5039728 TGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
5039793 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAA
66 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAA
* * *
5039858 AGCAGAAATTGAAAATACCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGAT
131 AGCAGAAATTGAAAATACCTCAGCATACCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGAT
5039923 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
196 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
5039959 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
5040024 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAA
66 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAA
* * * *
5040089 AGCAGAAATTGAAAATATCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGAT
131 AGCAGAAATTGAAAATACCTCAGCATACCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGAT
5040154 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
196 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
* *
5040190 TGAAGCTCAACTCACCTCTCGCAAGATAAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
*
5040255 GTGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAA
66 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAA
*
5040320 AGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGAT
131 AGCAGAAATTGAAAATACCTCAGCATACCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGAT
5040385 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
196 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
5040421 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
*
5040486 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTCTTGGAAAACATGAATTAAAA
66 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAA
* *
5040551 AGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
131 AGCAGAAATTGAAAATACCTCAGCATACCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGAT
5040616 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
196 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
*
5040652 TGAGGCTCGACTCACCTCTCGCAAGATGAGTTGATTTTTGAAA
1 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAA
5040695 AACAGGAATT
Statistics
Matches: 716, Mismatches: 20, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
231 716 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (231 bp):
TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAA
AGCAGAAATTGAAAATACCTCAGCATACCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGAT
TTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
Found at i:5039979 original size:71 final size:71
Alignment explanation
Indices: 5039888--5040067 Score: 306
Period size: 71 Copynumber: 2.5 Consensus size: 71
5039878 CGGCGTACCC
* * * *
5039888 TGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
5039953 GTGTCT
66 GTGTCT
*
5039959 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
5040024 GTGTCT
66 GTGTCT
*
5040030 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
5040068 CTTGGAAAAC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 102 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (71 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
GTGTCT
Found at i:5040200 original size:391 final size:391
Alignment explanation
Indices: 5039473--5040227 Score: 1357
Period size: 391 Copynumber: 1.9 Consensus size: 391
5039463 ATTTAACAGG
* *
5039473 AATTGAAATTACCCCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
1 AATTGAAAATACCCCAGCGTACCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
* * * *
5039538 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGTTCAACTTACTTCTCGCAATATAAGTTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATAAGTTGAT
* *
5039603 TTTTGAAACATAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
131 TTTTGAAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
5039668 GCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCGGCGTACCCTGAGG
196 GCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCGGCGTACCCTGAGG
5039733 TTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTC
261 TTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTC
* * *
5039798 TTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAG
326 TTGAAGCTCAACTCACCTCTCGCAAGATAAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAG
5039863 A
391 A
* * *
5039864 AATTGAAAATACCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
1 AATTGAAAATACCCCAGCGTACCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
*
5039929 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATAAGTTGAT
5039994 TTTTGAAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
131 TTTTGAAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
5040059 GCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATATCTCGGCGTACCCTGAGG
196 GCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCGGCGTACCCTGAGG
5040124 TTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTC
261 TTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTC
*
5040189 TTGAAGCTCAACTCACCTCTCGCAAGATAAGTTGATTTT
326 TTGAAGCTCAACTCACCTCTCGCAAGATAAGCTGATTTT
5040228 TGAAACATAA
Statistics
Matches: 347, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
391 347 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (391 bp):
AATTGAAAATACCCCAGCGTACCCCGAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATAAGTTGAT
TTTTGAAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCGGCGTACCCTGAGG
TTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTC
TTGAAGCTCAACTCACCTCTCGCAAGATAAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAG
A
Found at i:5040210 original size:71 final size:71
Alignment explanation
Indices: 5040125--5040298 Score: 285
Period size: 71 Copynumber: 2.5 Consensus size: 71
5040115 ACCCTGAGGT
* *
5040125 TCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACATAAATTCAAATTACCTCAACGTGTCT
5040190 TGAAGC
66 TGAAGC
*
5040196 TCAACTCACCTCTCGCAAGATAAGTTGATTTTTGAAACATAAATTCAAATTACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACATAAATTCAAATTACCTCAACGTGTCT
*
5040261 TGAGGC
66 TGAAGC
* * *
5040267 TCAACTCACCTCTCGTAATATGAGCTGATTTT
1 TCAACTCACCTCTCGCAATATAAGTTGATTTT
5040299 CTTGGAAAAC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 95 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAACATAAATTCAAATTACCTCAACGTGTCT
TGAAGC
Found at i:5040331 original size:391 final size:381
Alignment explanation
Indices: 5039498--5040458 Score: 1317
Period size: 391 Copynumber: 2.5 Consensus size: 381
5039488 AGCGTGCCCC
* * *
5039498 GAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACG
1 GAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTTGAAACATAAATTGAAATTACCTCAACG
* *
5039563 TGTCTTGAGGTTCAACTTACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACC
66 TGTCTTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACC
*
5039628 TCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAAT
131 TCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAAT
5039693 TAAAAAGCAGAAATTGAAAATACCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAG
196 TAAAAAGCAGAAATTGAAAATACCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAG
*
5039758 TTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
261 TTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAA
* * * **
5039823 TATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCGGCGTACCC
326 GATAAGCTGATTTTCTTGGAAAACATAAATT----A-CA-AAATT----ATACCTCAACGTACCC
5039888 T
381 T
* * *
5039889 GAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACG
1 GAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTTGAAACATAAATTGAAATTACCTCAACG
* * * *
5039954 TGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACC
66 TGTCTTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACC
5040019 TCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAAT
131 TCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAAT
*
5040084 TAAAAAGCAGAAATTGAAAATATCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAG
196 TAAAAAGCAGAAATTGAAAATACCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAG
5040149 TTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAA
261 TTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAA
* ** *
5040214 GATAAGTTGA-TTT-TT-G-AAACATAAATT-C-AAA-T-TACCTCAACGTGTCTT
326 GATAAGCTGATTTTCTTGGAAAACATAAATTACAAAATTATACCTCAACGTACCCT
* *
5040262 GAGGCTCAACTCACCTCTCGTAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAGAA
1 GAGGCTCAACTCACCTCTCGCAATATAAGCTGA-TTT-TT-G-AAAC----A-T---------AA
* * * * *
5040327 ATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAA
48 ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAA
* *
5040392 ACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATT
113 ACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
5040457 TT
178 TT
5040459 TGAAACATAA
Statistics
Matches: 518, Mismatches: 34, Indels: 36
0.88 0.06 0.06
Matches are distributed among these distances:
373 39 0.08
374 3 0.01
375 2 0.00
376 1 0.00
377 4 0.01
378 1 0.00
379 3 0.01
381 2 0.00
382 1 0.00
387 10 0.02
388 1 0.00
389 2 0.00
390 3 0.01
391 446 0.86
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (381 bp):
GAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTTGAAACATAAATTGAAATTACCTCAACG
TGTCTTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACC
TCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAAT
TAAAAAGCAGAAATTGAAAATACCTCGGCGTACCCTGAGGTTCAACTCACTTCTCGCAATATAAG
TTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAA
GATAAGCTGATTTTCTTGGAAAACATAAATTACAAAATTATACCTCAACGTACCCT
Found at i:5040441 original size:71 final size:71
Alignment explanation
Indices: 5040325--5040518 Score: 307
Period size: 71 Copynumber: 2.7 Consensus size: 71
5040315 TAAAAAGCAG
* * * * * *
5040325 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTG
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTG
5040390 AAACAT
66 AAACAT
* *
5040396 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTG
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTG
5040461 AAACAT
66 AAACAT
*
5040467 AAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
5040519 GAGCTAATTT
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 113 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (71 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTG
AAACAT
Found at i:5040529 original size:71 final size:71
Alignment explanation
Indices: 5040350--5040521 Score: 308
Period size: 71 Copynumber: 2.4 Consensus size: 71
5040340 CAGCATGCCC
* * *
5040350 TGAGGCTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATAAATTGAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
5040415 GTGTCT
66 GTGTCT
*
5040421 TGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
5040486 GTGTCT
66 GTGTCT
5040492 TGAGGCTCAACTCACCTCTCGCAATATGAG
1 TGAGGCTCAACTCACCTCTCGCAATATGAG
5040522 CTAATTTTCT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 96 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTCAAATTACCTCAAC
GTGTCT
Found at i:5040562 original size:160 final size:158
Alignment explanation
Indices: 5040396--5040708 Score: 482
Period size: 160 Copynumber: 2.0 Consensus size: 158
5040386 TTTGAAACAT
* * * *
5040396 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTG
*
5040461 AAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTAA
66 AAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGCTAA
* *
5040526 TTTTCTTGGAAAACATGAATTAAAAAGCAG
131 -TTT-TTGAAAAACAGGAATTAAAAAGCAG
* * *
5040556 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTG
* * * *
5040621 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCGACTCACCTCTCGCAAGATGAGTTGA
66 AAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGCTAA
5040686 TTTTTGAAAAACAGGAATTAAAA
131 TTTTTGAAAAACAGGAATTAAAA
5040709 GGTTCAACTC
Statistics
Matches: 139, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
158 18 0.13
159 3 0.02
160 118 0.85
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (158 bp):
AAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTG
AAACATAAATTCAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAGATGAGCTAA
TTTTTGAAAAACAGGAATTAAAAAGCAG
Found at i:5040672 original size:71 final size:71
Alignment explanation
Indices: 5040556--5040694 Score: 206
Period size: 71 Copynumber: 2.0 Consensus size: 71
5040546 TAAAAAGCAG
* * *
5040556 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTG
5040621 AAACAT
66 AAACAT
* * * * *
5040627 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCGACTCACCTCTCGCAAGATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTG
5040692 AAA
66 AAA
5040695 AACAGGAATT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAAGATGAGTTGATTTTTG
AAACAT
Found at i:5040811 original size:127 final size:126
Alignment explanation
Indices: 5040587--5040954 Score: 587
Period size: 127 Copynumber: 2.9 Consensus size: 126
5040577 GCCCTGAGGC
* * * *
5040587 TCAACTCACTTCTCGCAATATGAGTTGATTTTTG--AAACATAAATTGAAATTACCTCAACGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* * * *
5040650 CTTGAGGCTCGACTCACCTCTCGCAAGATGAGTTGATTTTTGAAAAACAGGAATTAAAAGGT
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAGAAATTAAAAGGT
5040712 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
**
5040777 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGATAAAGTAGAAATTAAAAGGT
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA-AAAACAGAAATTAAAAGGT
* *
5040839 TCAACCCACCTCTCGCAATATGAGTCGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
*
5040904 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAA
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAA
5040955 GTTGAAATTA
Statistics
Matches: 225, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
125 32 0.14
126 12 0.05
127 181 0.80
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (126 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTAAAAGGT
Found at i:5040966 original size:72 final size:72
Alignment explanation
Indices: 5040839--5041086 Score: 383
Period size: 72 Copynumber: 3.4 Consensus size: 72
5040829 ATTAAAAGGT
* *
5040839 TCAACCCACCTCTCGCAATATGAGTCGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGACAAACAGAAATTGAAATTACCTCAGCGTGT
5040904 CCTGAGGC
65 CCTGAGGC
*
5040912 TCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAGTTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC
5040977 CTGAGGC
66 CTGAGGC
* * * *
5040984 TCAACTCACTTCTCGCGATATGAGTTGATTTTTG--AAACATAAATTGAAATTACCTCAACGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
*
5041047 CTTGAGGC
65 CCTGAGGC
*
5041055 TCAACTCACCTCTCGCAATATGAGCTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
5041087 CTTGGAAAAC
Statistics
Matches: 162, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
70 4 0.02
71 58 0.36
72 67 0.41
73 33 0.20
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC
CTGAGGC
Found at i:5066000 original size:24 final size:24
Alignment explanation
Indices: 5065940--5066000 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
5065930 CTAGTAATAT
*
5065940 AATATATATATATAATATATATAA
1 AATATATATATATAACATATATAA
*
5065964 AATACT-TATATATAACATATGTGAA
1 AATA-TATATATATAACATATAT-AA
5065989 AATATATA-ATAT
1 AATATATATATAT
5066001 TAAAACATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 23 0.72
25 9 0.28
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.39
Consensus pattern (24 bp):
AATATATATATATAACATATATAA
Found at i:5066753 original size:14 final size:15
Alignment explanation
Indices: 5066725--5066754 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
5066715 GATTTTAAAA
5066725 AAAAGAGAGAGAGGG
1 AAAAGAGAGAGAGGG
5066740 AAAAGAGA-AGAGGG
1 AAAAGAGAGAGAGGG
5066754 A
1 A
5066755 GAGAAGGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (15 bp):
AAAAGAGAGAGAGGG
Found at i:5067541 original size:23 final size:23
Alignment explanation
Indices: 5067509--5067553 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
5067499 TCTGGGTTTT
5067509 GGGGTTTGGGTCT-GGTTGTAAA
1 GGGGTTTGGGTCTAGGTTGTAAA
*
5067531 GGGGTATTGGGTCTAGTTTGTAA
1 GGGGT-TTGGGTCTAGGTTGTAA
5067554 TGGGTTAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 8 0.40
24 7 0.35
ACGTcount: A:0.16, C:0.04, G:0.42, T:0.38
Consensus pattern (23 bp):
GGGGTTTGGGTCTAGGTTGTAAA
Found at i:5075287 original size:31 final size:31
Alignment explanation
Indices: 5075252--5075318 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
5075242 TAATTTCCAG
* *
5075252 TAATTATACGTATAAAA-ATTTTATTTTATTT
1 TAATTATACGTATAAAACA-TTAATTTTAATT
*
5075283 TAATTATATGTATAAAACATTAATTTTAATT
1 TAATTATACGTATAAAACATTAATTTTAATT
5075314 TAATT
1 TAATT
5075319 CTACATAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (31 bp):
TAATTATACGTATAAAACATTAATTTTAATT
Found at i:5079857 original size:127 final size:130
Alignment explanation
Indices: 5079724--5080040 Score: 360
Period size: 131 Copynumber: 2.4 Consensus size: 130
5079714 CCCAACACAG
* * * * *
5079724 TAGGGCACGATTCATCGAATTTCTAAACATTGGACATTACCTT-GTTTT-AGAA-TTTAAAAAAT
1 TAGGGCACGATTCACCGAATTGCTAAACATCGAACATTACCTTCGTTTTAAGAATTTTAAAAAAC
*
5079786 ATGAGTGAAA-TCCAAAATGG-ACGTTTGATTATTTTGAACAAACG-GAAAATTGCAACCCAGCA
66 ATGAGTGAAATTCC-AAA-GGAACATTTGATTATTTTGAACAAACGTG-AAATTGCAACCCAGCA
5079848 CGA
128 CGA
* * * * * *
5079851 TAGGGCACGATTCCCCGAATTGCTAAGCATCGAACGTTTCCTTCGTTTTAAAGAATTTTTAAAGA
1 TAGGGCACGATTCACCGAATTGCTAAACATCGAACATTACCTTCGTTTT-AAGAATTTTAAAAAA
* *
5079916 CATGAGTGAAATTCCAAAGGAATATTTGATTATTTTGAACAAACGTGAAATTGCAATCCAGCACG
65 CATGAGTGAAATTCCAAAGGAACATTTGATTATTTTGAACAAACGTGAAATTGCAACCCAGCACG
5079981 A
130 A
* * * * *
5079982 TAGAGCACGATTC-CCTGAATTGCCAAACATCGAACGTTGCCTTTGTTTTAAAGAATTTT
1 TAGGGCACGATTCACC-GAATTGCTAAACATCGAACATTACCTTCGTTTT-AAGAATTTT
5080041 TTAATGAATA
Statistics
Matches: 163, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
127 35 0.21
128 5 0.03
130 8 0.05
131 111 0.68
132 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (130 bp):
TAGGGCACGATTCACCGAATTGCTAAACATCGAACATTACCTTCGTTTTAAGAATTTTAAAAAAC
ATGAGTGAAATTCCAAAGGAACATTTGATTATTTTGAACAAACGTGAAATTGCAACCCAGCACGA
Found at i:5080703 original size:2 final size:2
Alignment explanation
Indices: 5080698--5080738 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
5080688 TATAGATTTA
5080698 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5080739 AAACGATACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:5081935 original size:22 final size:26
Alignment explanation
Indices: 5081887--5081937 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 26
5081877 ATACAATTTC
5081887 TTTTCTTTTTTCTTTTTGCTCTGCTTG
1 TTTTCTTTTTTCTTTTTGC-CTGCTTG
5081914 TTTT-TTTTTT-TTTTTG-CT-CTTG
1 TTTTCTTTTTTCTTTTTGCCTGCTTG
5081936 TT
1 TT
5081938 GTTGTGGTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.25
23 2 0.08
25 6 0.25
26 6 0.25
27 4 0.17
ACGTcount: A:0.00, C:0.14, G:0.10, T:0.76
Consensus pattern (26 bp):
TTTTCTTTTTTCTTTTTGCCTGCTTG
Found at i:5082683 original size:43 final size:43
Alignment explanation
Indices: 5082635--5082772 Score: 129
Period size: 43 Copynumber: 3.2 Consensus size: 43
5082625 ACTCTACCAC
5082635 TTAGGGAGTTAAGGCTTGCTTCTTCGACTTGCTCCACTACTGT
1 TTAGGGAGTTAAGGCTTGCTTCTTCGACTTGCTCCACTACTGT
** * * * * * ***
5082678 TTAGGGAGACAA-GATCTACAATCTTC-AGCCTGTTACC-CTACCAC
1 TTAGGGAGTTAAGGCT-TGC-TTCTTCGA-CTTGCT-CCACTACTGT
5082722 TTAGGGAGTTAAGGCTTGCTTCTTCGACTTGCTCCACTACTGT
1 TTAGGGAGTTAAGGCTTGCTTCTTCGACTTGCTCCACTACTGT
5082765 TTAGGGAG
1 TTAGGGAG
5082773 ACAAGATCTA
Statistics
Matches: 68, Mismatches: 20, Indels: 14
0.67 0.20 0.14
Matches are distributed among these distances:
42 4 0.06
43 34 0.50
44 26 0.38
45 4 0.06
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (43 bp):
TTAGGGAGTTAAGGCTTGCTTCTTCGACTTGCTCCACTACTGT
Found at i:5082686 original size:87 final size:87
Alignment explanation
Indices: 5082505--5082947 Score: 611
Period size: 87 Copynumber: 5.1 Consensus size: 87
5082495 TTGTAATTTC
* * * *
5082505 AGGGAGATAAGATCTGCAATCTTCAGCCCGTTACCCTACCACTTAGGGGGGTTAAGGCTTGCTTC
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTA-GGGAGTTAAGGCTTGCTTC
* *
5082570 TTCGATTTGCTCCACTACTATTT
65 TTCGACTTGCTCCACTACTGTTT
* * *
5082593 AAGGAGACAAGATCTACAATCTTCAGCCTATTACTCTACCACTTAGGGAGTTAAGGCTTGCTTCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAGGGAGTTAAGGCTTGCTTCT
5082658 TCGACTTGCTCCACTACTGTTT
66 TCGACTTGCTCCACTACTGTTT
5082680 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAGGGAGTTAAGGCTTGCTTCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAGGGAGTTAAGGCTTGCTTCT
5082745 TCGACTTGCTCCACTACTGTTT
66 TCGACTTGCTCCACTACTGTTT
* * * *
5082767 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACTCTACCACTTAGGGGGTTAAGACTTACTGTC
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAGGGAGTTAAGGCTTGCT-TC
* * * * ** *
5082832 TTTGATTTGTTCCACTGCAACTTC
65 TTCGACTTGCTCCACTAC-TGTTT
* * *
5082856 AGGGAGACAAGATCTGCAATCTTCAGCCTATTACCCTACTACTTAGGG-GTTTAAGGCTTGCTTC
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAGGGAG-TTAAGGCTTGCTTC
*
5082920 TTCGA-TCTGCTCTACTACTGTTT
65 TTCGACT-TGCTCCACTACTGTTT
5082943 AGGGA
1 AGGGA
5082948 TAAGATCTGT
Statistics
Matches: 315, Mismatches: 36, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
87 189 0.60
88 70 0.22
89 56 0.18
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (87 bp):
AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAGGGAGTTAAGGCTTGCTTCT
TCGACTTGCTCCACTACTGTTT
Found at i:5082726 original size:44 final size:44
Alignment explanation
Indices: 5082595--5082903 Score: 127
Period size: 44 Copynumber: 7.0 Consensus size: 44
5082585 TACTATTTAA
* *
5082595 GGAGACAAGATCTACAATCTTCAGCCTATTACTCTACCACTTAG
1 GGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAG
** * * * * * ***
5082639 GGAGTTAAG-GCTTGC-TTCTTC-GACTTGCT-CCACTACTGTTTAG
1 GGAGACAAGATC-TACAATCTTCAG-CCTGTTACC-CTACCACTTAG
5082682 GGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAG
1 GGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAG
** * * * * * ***
5082726 GGAGTTAAG-GCTTGC-TTCTTC-GACTTGCT-CCACTACTGTTTAG
1 GGAGACAAGATC-TACAATCTTCAG-CCTGTTACC-CTACCACTTAG
*
5082769 GGAGACAAGATCTACAATCTTCAGCCTGTTACTCTACCACTTAG
1 GGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAG
* ** ** * ** * *
5082813 GGGGTTAAGA-CTTACTGTCTT-TGATTTGTT-CCACTGCAACTTCAG
1 GGAGACAAGATC-TACAATCTTCAG-CCTGTTACC-CTACCACTT-AG
* * *
5082858 GGAGACAAGATCTGCAATCTTCAGCCTATTACCCTACTACTTAG
1 GGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAG
5082902 GG
1 GG
5082904 GTTTAAGGCT
Statistics
Matches: 178, Mismatches: 66, Indels: 42
0.62 0.23 0.15
Matches are distributed among these distances:
42 5 0.03
43 56 0.31
44 83 0.47
45 30 0.17
46 4 0.02
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (44 bp):
GGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACCACTTAG
Found at i:5083115 original size:64 final size:64
Alignment explanation
Indices: 5083037--5083264 Score: 359
Period size: 64 Copynumber: 3.6 Consensus size: 64
5083027 CTGGGATGCT
* *
5083037 ATGATCAAAATGAATTAAATGCTCCTAACTAGATGTGATGCTTATGTCAAATAATTAGGATGTC
1 ATGATCGAAATGAATTAAATACTCCTAACTAGATGTGATGCTTATGTCAAATAATTAGGATGTC
* *
5083101 ATGATCGAAATGAATTAAATACTCCTAACTAGATGTGATGCTTATGTCAAATAATTAGAATGTT
1 ATGATCGAAATGAATTAAATACTCCTAACTAGATGTGATGCTTATGTCAAATAATTAGGATGTC
* * * *
5083165 ATGATTGAAATGATTTAAATGCTCCTAACTAGATGTGAAGCTTATGTCAAATAATTAGGATG-C
1 ATGATCGAAATGAATTAAATACTCCTAACTAGATGTGATGCTTATGTCAAATAATTAGGATGTC
*
5083228 TATGATCGAAATGAATCAAATACTCCTAACTAGATGT
1 -ATGATCGAAATGAATTAAATACTCCTAACTAGATGT
5083265 ATTATGAATG
Statistics
Matches: 149, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
64 149 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (64 bp):
ATGATCGAAATGAATTAAATACTCCTAACTAGATGTGATGCTTATGTCAAATAATTAGGATGTC
Found at i:5091940 original size:131 final size:130
Alignment explanation
Indices: 5091703--5092033 Score: 386
Period size: 131 Copynumber: 2.5 Consensus size: 130
5091693 AAAAAAACAA
* * * * * *
5091703 AACCTAGCACAATAGGGCACGATTCCTCGAATTTCTAAACATTGGACATTGTCTTGTTTT--AGA
1 AACCCAGCACGATAGAGCACGATTCCTCGAATTGCTAAACATCGAACATTGTCTTGTTTTAAAGA
** * *
5091766 ATTTAAAAAAATATGAGTGAAATCCAAAAAGGACGTTCGATTATTTTGAACAAACGA-AAAATTA
66 ATTTTTAAAAACATGAGTGAAATCCAAAAAGGACATTCGATTATTTTGAACAAAC-ATAAAATTA
5091830 C
130 C
* * *
5091831 AACCCAGCACGATAGAGCACGATTCCTCGAATTGCTAAGCATCGAACGTTTTCTTCGTTTTAAAG
1 AACCCAGCACGATAGAGCACGATTCCTCGAATTGCTAAACATCGAACATTGTCTT-GTTTTAAAG
* * * * *
5091896 AATTTTTAAAGACATGAGTGAAATTC-TAAAGGAATATTCGATTATTTTGAACAAACATGAAATT
65 AATTTTTAAAAACATGAGTGAAATCCAAAAAGG-ACATTCGATTATTTTGAACAAACATAAAATT
*
5091960 GC
129 AC
*
5091962 AACCCAGCACGATAGAGCACGATT-CTCCGAATTG-TCAAACATCGAACATTGCCTTTGTTTTAA
1 AACCCAGCACGATAGAGCACGATTCCT-CGAATTGCT-AAACATCGAACATTGTC-TTGTTTTAA
5092025 AGAATTTTT
63 AGAATTTTT
5092034 TAATGAATAA
Statistics
Matches: 172, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
128 46 0.27
129 5 0.03
130 9 0.05
131 110 0.64
132 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (130 bp):
AACCCAGCACGATAGAGCACGATTCCTCGAATTGCTAAACATCGAACATTGTCTTGTTTTAAAGA
ATTTTTAAAAACATGAGTGAAATCCAAAAAGGACATTCGATTATTTTGAACAAACATAAAATTAC
Found at i:5092765 original size:2 final size:2
Alignment explanation
Indices: 5092714--5092748 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
5092704 TAGATTTAAA
5092714 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5092749 ACGATATAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:5097322 original size:5 final size:5
Alignment explanation
Indices: 5097312--5097337 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
5097302 AATATTTACA
5097312 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
5097338 TATATGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:5097633 original size:15 final size:15
Alignment explanation
Indices: 5097613--5097651 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
5097603 GGCCTATCAT
5097613 AAACCAAAAAAAAAA
1 AAACCAAAAAAAAAA
* * *
5097628 AAACCAACAACAAAT
1 AAACCAAAAAAAAAA
5097643 AAACCAAAA
1 AAACCAAAA
5097652 TAATAAAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.77, C:0.21, G:0.00, T:0.03
Consensus pattern (15 bp):
AAACCAAAAAAAAAA
Found at i:5098885 original size:5 final size:5
Alignment explanation
Indices: 5098864--5098916 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
5098854 TGTTAAAATA
* *
5098864 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
5098912 TATAT
1 TATAT
5098917 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:5098895 original size:10 final size:9
Alignment explanation
Indices: 5098861--5098917 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
5098851 ATGTGTTAAA
5098861 ATATATATT
1 ATATATATT
*
5098870 AAAT-TATT
1 ATATATATT
5098878 AT-TATATT
1 ATATATATT
5098886 ATAGTATATT
1 ATA-TATATT
5098896 ATAT-TA-T
1 ATATATATT
5098903 ATATTATATT
1 ATA-TATATT
5098913 ATATA
1 ATATA
5098918 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:5098907 original size:12 final size:12
Alignment explanation
Indices: 5098862--5098917 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
5098852 TGTGTTAAAA
*
5098862 TATATATTAAAT
1 TATATATTATAT
5098874 TAT-TATTATATT
1 TATATATTATA-T
5098886 ATAGTATATTATAT
1 -TA-TATATTATAT
5098900 TATATATTATAT
1 TATATATTATAT
5098912 TATATA
1 TATATA
5098918 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:5100266 original size:18 final size:19
Alignment explanation
Indices: 5100233--5100271 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
5100223 ATATATAGAT
5100233 ATATATATTGCATA-TTGA
1 ATATATATTGCATATTTGA
5100251 ATATATATTG-ATTATTTGA
1 ATATATATTGCA-TATTTGA
5100270 AT
1 AT
5100272 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.05
18 12 0.63
19 6 0.32
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGCATATTTGA
Found at i:5100620 original size:39 final size:39
Alignment explanation
Indices: 5100510--5100644 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
5100500 GACCTCGAGT
* * * *
5100510 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
5100551 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
5100589 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
5100628 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
5100645 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Done.