Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 146 of 345
Found at i:39859517 original size:8 final size:8
Alignment explanation
Indices: 39859504--39859533 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
39859494 TAACACCCAA
39859504 AAAATCCC
1 AAAATCCC
39859512 AAAATCCC
1 AAAATCCC
39859520 AAAATCCC
1 AAAATCCC
39859528 AAAATC
1 AAAATC
39859534 TTGAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.53, C:0.33, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAATCCC
Found at i:39861013 original size:29 final size:28
Alignment explanation
Indices: 39860980--39861086 Score: 90
Period size: 29 Copynumber: 3.8 Consensus size: 28
39860970 ATAATATGAT
*
39860980 TTGGGCCTAATGGGCCATATCAATGTGAA
1 TTGGGCCTAATGGGCCATATGAAT-TGAA
* * *
39861009 TTGGGCCTAGTGGGCTATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAAT-TGAA
* * * **
39861038 CTGGGCC-AGATGCGCCATTTGAATAAAA
1 TTGGGCCTA-ATGGGCCATATGAATTGAA
*
39861066 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
39861087 CATGTATGTA
Statistics
Matches: 59, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
28 18 0.31
29 41 0.69
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATTGAA
Found at i:39869750 original size:47 final size:47
Alignment explanation
Indices: 39869680--39870021 Score: 585
Period size: 47 Copynumber: 7.3 Consensus size: 47
39869670 CCCTTCGGGA
* * * *
39869680 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
39869727 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
39869774 CGTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
39869821 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
39869868 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
39869915 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
39869962 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
39870009 TTTACCACATATA
1 CTTATCACATATA
39870022 CATATCTTAT
Statistics
Matches: 281, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 281 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
Found at i:39873984 original size:25 final size:25
Alignment explanation
Indices: 39873938--39873985 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
39873928 GCACTCTCTG
* **
39873938 GAGCCATATAATAGGATGCTCATGT
1 GAGCCATATAACAGGAAACTCATGT
*
39873963 GAGCCATGTAACAGGAAACTCAT
1 GAGCCATATAACAGGAAACTCAT
39873986 AAGAGTTTAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (25 bp):
GAGCCATATAACAGGAAACTCATGT
Found at i:39882649 original size:49 final size:49
Alignment explanation
Indices: 39882586--39882802 Score: 316
Period size: 49 Copynumber: 4.5 Consensus size: 49
39882576 TGAAAGTGTA
* *
39882586 TGAAAATGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
* *
39882635 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
* * *
39882684 TGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
* *
39882733 TG-AAG-GTGTATATATGTGATAGGGCCGAATGGCCAATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
*
39882780 TGAAA--GTGTATAAATGTGATAAG
1 TGAAAGTGTGTATATATGTGATAAG
39882803 TCCCAAAGGG
Statistics
Matches: 153, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
47 55 0.36
48 5 0.03
49 93 0.61
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (49 bp):
TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
Found at i:39895364 original size:31 final size:31
Alignment explanation
Indices: 39895321--39895384 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
39895311 CCTTTTCATA
*
39895321 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
* **
39895352 TTTCATATTTCATATTACTGGGCCAAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
39895383 TT
1 TT
39895385 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCAAAGCCT
Found at i:39895653 original size:23 final size:24
Alignment explanation
Indices: 39895577--39895720 Score: 222
Period size: 24 Copynumber: 6.0 Consensus size: 24
39895567 GCTTTATCAT
*
39895577 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
39895602 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
39895627 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
39895650 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
39895674 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
39895698 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
39895721 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 1, Indels: 11
0.90 0.01 0.09
Matches are distributed among these distances:
23 24 0.21
24 58 0.51
25 25 0.22
26 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:39895794 original size:20 final size:20
Alignment explanation
Indices: 39895769--39895835 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
39895759 TTATGATTAC
39895769 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
39895789 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
39895809 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
39895829 ACCATGT
1 ATCATGT
39895836 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:39895800 original size:11 final size:11
Alignment explanation
Indices: 39895769--39895824 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
39895759 TTATGATTAC
39895769 ATCATGTGCAT
1 ATCATGTGCAT
*
39895780 ATCA--TACAT
1 ATCATGTGCAT
39895789 ATCATGTGCAT
1 ATCATGTGCAT
*
39895800 ATCA--TACAT
1 ATCATGTGCAT
*
39895809 GTCATGTGCAT
1 ATCATGTGCAT
39895820 ATCAT
1 ATCAT
39895825 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:39897680 original size:40 final size:39
Alignment explanation
Indices: 39897574--39897702 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
39897564 TGCTGGAAAT
* * * *
39897574 TATATCCGGGTTAAGACCCGAAGGCAAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
39897614 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
39897654 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
39897694 TATATCCGG
1 TATATCCGG
39897703 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 3 0.04
40 72 0.94
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:39899133 original size:25 final size:25
Alignment explanation
Indices: 39899091--39899138 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
39899081 ATACATAAAC
* * *
39899091 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
39899116 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
39899139 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:39902408 original size:46 final size:46
Alignment explanation
Indices: 39902358--39902534 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
39902348 TGGTTGAGCA
39902358 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
39902404 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
39902449 CATCCGAACTCGTTGAGTTGTAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTG-AGTCCGAGTTCACTTATGGATGCGAATG
* * *
39902498 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
39902535 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 47 0.42
47 34 0.31
48 11 0.10
49 3 0.03
51 4 0.04
52 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:39902515 original size:94 final size:93
Alignment explanation
Indices: 39902355--39902527 Score: 310
Period size: 94 Copynumber: 1.8 Consensus size: 93
39902345 GGATGGTTGA
* *
39902355 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
39902420 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
39902448 GCATCCGAACTCGTTGAGTTGTAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTG-AGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
39902513 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
39902528 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 21 0.28
94 55 0.72
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:39909993 original size:46 final size:46
Alignment explanation
Indices: 39909943--39910118 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
39909933 TGGTTGAGCA
39909943 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
39909989 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
39910034 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
39910082 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
39910119 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:39910099 original size:93 final size:93
Alignment explanation
Indices: 39909940--39910111 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
39909930 GGATGGTTGA
* *
39909940 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
39910005 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
39910033 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
39910098 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
39910112 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:39912690 original size:26 final size:26
Alignment explanation
Indices: 39912661--39912794 Score: 232
Period size: 26 Copynumber: 5.2 Consensus size: 26
39912651 TGGTACAAAT
*
39912661 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
39912687 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
39912713 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
39912739 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
39912765 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
39912791 TGAT
1 TGAT
39912795 GGACATTTCA
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:39913987 original size:8 final size:8
Alignment explanation
Indices: 39913974--39914003 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
39913964 AGATCGGCAC
39913974 AAGCCGAA
1 AAGCCGAA
39913982 AAGCCGAA
1 AAGCCGAA
*
39913990 ATGCCGAA
1 AAGCCGAA
39913998 AAGCCG
1 AAGCCG
39914004 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:39914433 original size:27 final size:27
Alignment explanation
Indices: 39914393--39914533 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
39914383 AGGAAGTGTC
* *
39914393 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
39914420 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
39914446 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
39914474 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
39914501 CTGGTGGCTCTGCCACAA-TATATGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
39914528 CTGGTG
1 CTGGTG
39914534 ACTTTGTCAC
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 10 0.10
27 86 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:39914474 original size:54 final size:54
Alignment explanation
Indices: 39914389--39914533 Score: 238
Period size: 54 Copynumber: 2.7 Consensus size: 54
39914379 ATGGAGGAAG
*
39914389 TGTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATATGATCTGGTGGCTCTGCCACATATATC
*
39914443 TGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATATGATCTGGTGGCTCTGCCACATATATC
* *
39914497 TGTTCTGGTGGCTCTGCCACAA-TATATGTATCTGGTG
1 TGTCCTGGTGGCTATGCCACAATTATATG-ATCTGGTG
39914534 ACTTTGTCAC
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATATGATCTGGTGGCTCTGCCACATATATC
Found at i:39914545 original size:81 final size:81
Alignment explanation
Indices: 39914393--39914546 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 81
39914383 AGGAAGTGTC
* * *
39914393 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATATGTCCTGGTGACTAT
39914458 GCCACAATTATCTGAT
66 GCCACAATTATCTGAT
* * *
39914474 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATATGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATATGT-CCTGGTGACT
* *
39914537 TTGTCACAAT
64 ATGCCACAAT
39914547 ATTTGCAGCC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 9 0.14
81 54 0.86
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATATGTCCTGGTGACTAT
GCCACAATTATCTGAT
Found at i:39928281 original size:39 final size:40
Alignment explanation
Indices: 39928203--39928281 Score: 92
Period size: 39 Copynumber: 2.0 Consensus size: 40
39928193 GATAATTAAA
* *
39928203 AATAAAATTCTAAAATCTAATAAAAATAAAAAGTAGTTTT
1 AATAAAATTCTAAAAACTAATAAAAATAAAAAATAGTTTT
*
39928243 AATAAAATT-TAAAAACATAA-AATAATAAATAAAT-GTTTT
1 AATAAAATTCTAAAAAC-TAATAAAAATAAA-AAATAGTTTT
39928282 TAAACATCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
39 19 0.56
40 15 0.44
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (40 bp):
AATAAAATTCTAAAAACTAATAAAAATAAAAAATAGTTTT
Found at i:39938066 original size:25 final size:25
Alignment explanation
Indices: 39937998--39938068 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
39937988 GAGGATGTGC
* * *
39937998 AAAAAGGCTTTTGCCCCAATTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACAG
39938024 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
39938050 -AAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
39938069 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
25 32 0.78
26 9 0.22
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:39938081 original size:24 final size:23
Alignment explanation
Indices: 39937997--39938095 Score: 81
Period size: 25 Copynumber: 4.0 Consensus size: 23
39937987 GGAGGATGTG
* * *
39937997 CAAAAAGGCTTTTGCCCCAATTTAC
1 CAAAAGGGC-TTTGCCCC-AGTTAT
39938022 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAG-TTAT
39938047 CAGAAAGGGCTTTGCCCCAGTTAT
1 CA-AAAGGGCTTTGCCCCAGTTAT
* **
39938071 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAG-GGCTTTGCC-CCAGTTAT
39938096 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
23 4 0.06
24 14 0.22
25 38 0.60
26 7 0.11
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (23 bp):
CAAAAGGGCTTTGCCCCAGTTAT
Found at i:39938322 original size:30 final size:31
Alignment explanation
Indices: 39938288--39938370 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
39938278 CATCTACAGT
39938288 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
39938318 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
39938349 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
39938371 TTGAGATTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 26 0.53
31 23 0.47
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:39938353 original size:31 final size:30
Alignment explanation
Indices: 39938288--39938365 Score: 129
Period size: 31 Copynumber: 2.6 Consensus size: 30
39938278 CATCTACAGT
*
39938288 AAAGGCTTCGGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
*
39938318 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
39938349 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
39938366 ATATGTTGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 22 0.49
31 23 0.51
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.21
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:39942127 original size:24 final size:24
Alignment explanation
Indices: 39942095--39942155 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
39942085 AATCTCAAAT
39942095 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
39942119 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
39942143 GCACTATGTGTGC
1 GCACTATGTGTGC
39942156 AAACATAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:39946872 original size:25 final size:25
Alignment explanation
Indices: 39946829--39946899 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
39946819 AAGGAAGTGC
*
39946829 AAAAGGGCTTTTGCCCCAGTTTATCG
1 AAAAGGGC-TTTGCCCCAGTTTATCA
39946855 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
39946880 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
39946900 AGTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 35 0.81
26 8 0.19
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:39946912 original size:24 final size:25
Alignment explanation
Indices: 39946828--39946912 Score: 90
Period size: 25 Copynumber: 3.4 Consensus size: 25
39946818 GAAGGAAGTG
39946828 CAAAAG-GGCTTTTGCCCCAGTTTAT
1 CAAAAGAGGC-TTTGCCCCAGTTTAT
39946853 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
*
39946878 CAAAA-AGGGCTTTGCCCTAG-TTAGT
1 CAAAAGA-GGCTTTGCCCCAGTTTA-T
39946903 -AAAAGAGGCT
1 CAAAAGAGGCT
39946913 AGGCCTCTAG
Statistics
Matches: 54, Mismatches: 1, Indels: 11
0.82 0.02 0.17
Matches are distributed among these distances:
24 15 0.28
25 31 0.57
26 8 0.15
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:39947157 original size:30 final size:31
Alignment explanation
Indices: 39947121--39947203 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
39947111 CGTTTACAGT
*
39947121 AAAGGCTTCGGCTCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
39947151 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
39947182 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
39947204 TTGAGATTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 25 0.52
31 23 0.48
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:39947186 original size:31 final size:30
Alignment explanation
Indices: 39947121--39947198 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
39947111 CGTTTACAGT
* *
39947121 AAAGGCTTCGGCTCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
*
39947151 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
39947182 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
39947199 ATATGTTGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 21 0.48
31 23 0.52
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:39957637 original size:54 final size:55
Alignment explanation
Indices: 39957579--39957686 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 55
39957569 ACACGCCCAT
*
39957579 GTCTCAGGCCATGTG-GACATTCAAAATAGGGACACACGGTCGTGTCCCA-CCCGA
1 GTCTCA-GCCATGTGAGACATTCAAAATAGGGACACACGGCCGTGTCCCAGCCCGA
** * *
39957633 GTCTCAGCTGTGTGAGTCATTCGAAATAGGGACACACGGCCGTGTCCCAGCCCG
1 GTCTCAGCCATGTGAGACATTCAAAATAGGGACACACGGCCGTGTCCCAGCCCG
39957687 TGTAACTCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
53 6 0.13
54 37 0.79
55 4 0.09
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (55 bp):
GTCTCAGCCATGTGAGACATTCAAAATAGGGACACACGGCCGTGTCCCAGCCCGA
Found at i:39958721 original size:21 final size:21
Alignment explanation
Indices: 39958695--39958735 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
39958685 CGAACATGCC
* *
39958695 AACAGAAGCTCGTGAGAGCTT
1 AACAGAAGCTCATAAGAGCTT
39958716 AACAGAAGCTCATAAGAGCT
1 AACAGAAGCTCATAAGAGCT
39958736 GATCCACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTT
Found at i:39961754 original size:40 final size:40
Alignment explanation
Indices: 39961704--39961892 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
39961694 GCTACTCGCT
* * *
39961704 CAAATGCCTTCGCGACTTAGCTCGGTTACAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* *
39961744 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
*
39961784 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* * * * *
39961824 CAAATGCCTTCGAGACATAGCCCGG-AATTAGTCATTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTAGCA
39961864 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
39961893 CATCCGAATA
Statistics
Matches: 132, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 130 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
Found at i:39969766 original size:40 final size:40
Alignment explanation
Indices: 39969718--39969906 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
39969708 GCTACTAGCT
39969718 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
39969758 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
39969798 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
39969838 CAAATTCCTTCGGGACTTAGCCCGG-AATTAGTCATTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
39969878 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
39969907 CATCCGAATA
Statistics
Matches: 138, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 136 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:39971844 original size:30 final size:30
Alignment explanation
Indices: 39971787--39971844 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
39971777 CACTGGCTGG
* * *
39971787 CACATGGGCATGTGGCCATCCCGTGTGGTT
1 CACACGGGCATGTGGCCAGCCCCTGTGGTT
39971817 CACACGGGCATGT-GCTCAGCCCCTGTGG
1 CACACGGGCATGTGGC-CAGCCCCTGTGG
39971845 GATTGGCTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.14, C:0.31, G:0.33, T:0.22
Consensus pattern (30 bp):
CACACGGGCATGTGGCCAGCCCCTGTGGTT
Found at i:39976061 original size:14 final size:15
Alignment explanation
Indices: 39976037--39976065 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
39976027 TTCCAAGCTA
39976037 AGAATAAAGAACAAT
1 AGAATAAAGAACAAT
39976052 AGAA-AAAGAACAAT
1 AGAATAAAGAACAAT
39976066 GGACACATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.07, G:0.14, T:0.10
Consensus pattern (15 bp):
AGAATAAAGAACAAT
Found at i:39976319 original size:32 final size:31
Alignment explanation
Indices: 39976284--39976358 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 31
39976274 TGTAAGCTGA
*
39976284 AAATAAAATAAGAAAT-AAGAAATAAAGATATA
1 AAATAAAATAAGAAATAAAG-AATAAAAAT-TA
*
39976316 AAAT--AA-AG-AAATAAAGAATAAAAATTA
1 AAATAAAATAAGAAATAAAGAATAAAAATTA
39976343 AAATAAAATAAAGAAA
1 AAATAAAAT-AAGAAA
39976359 AGGTTAGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
27 6 0.18
28 12 0.35
29 6 0.18
30 2 0.06
31 1 0.03
32 7 0.21
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (31 bp):
AAATAAAATAAGAAATAAAGAATAAAAATTA
Found at i:39976321 original size:13 final size:13
Alignment explanation
Indices: 39976303--39976349 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
39976293 AAGAAATAAG
39976303 AAATAAAGATATA
1 AAATAAAGATATA
*
39976316 AAATAAAGAAATAA
1 AAATAAAGATAT-A
*
39976330 AGAATAAAAAT-TA
1 A-AATAAAGATATA
39976343 AAATAAA
1 AAATAAA
39976350 ATAAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 6 0.21
13 13 0.45
14 3 0.10
15 7 0.24
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (13 bp):
AAATAAAGATATA
Found at i:39976329 original size:28 final size:28
Alignment explanation
Indices: 39976286--39976349 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
39976276 TAAGCTGAAA
*
39976286 ATAAAAT-AAGAAAT-AAGAAATAAAGAT
1 ATAAAATAAAGAAATAAAG-AATAAAAAT
39976313 ATAAAATAAAGAAATAAAGAATAAAAAT
1 ATAAAATAAAGAAATAAAGAATAAAAAT
39976341 -TAAAATAAA
1 ATAAAATAAA
39976350 ATAAAGAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 16 0.47
28 15 0.44
29 3 0.09
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (28 bp):
ATAAAATAAAGAAATAAAGAATAAAAAT
Found at i:39976339 original size:21 final size:20
Alignment explanation
Indices: 39976290--39976349 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
39976280 CTGAAAATAA
39976290 AATAAGAAATAAGAAATAAAG
1 AATAA-AAATAAGAAATAAAG
39976311 -ATATAAAATAAAGAAATAAAG
1 AATA-AAAAT-AAGAAATAAAG
*
39976332 AATAAAAATTA-AAATAAA
1 AATAAAAATAAGAAATAAA
39976350 ATAAAGAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
19 7 0.20
20 8 0.23
21 17 0.49
22 3 0.09
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.18
Consensus pattern (20 bp):
AATAAAAATAAGAAATAAAG
Found at i:39981842 original size:26 final size:25
Alignment explanation
Indices: 39981813--39981870 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
39981803 ATAAAACCTA
*
39981813 AAAATGAAATAGTA-TTAAATGAAAAT
1 AAAAT-AAAAAGTACTTAAA-GAAAAT
*
39981839 AAAATAAAAAGTACTTAAAGAAGAT
1 AAAATAAAAAGTACTTAAAGAAAAT
39981864 -AAATAAA
1 AAAATAAA
39981871 GATAAAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.24
25 12 0.41
26 10 0.34
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (25 bp):
AAAATAAAAAGTACTTAAAGAAAAT
Found at i:39981865 original size:25 final size:25
Alignment explanation
Indices: 39981813--39981896 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
39981803 ATAAAACCTA
*
39981813 AAAATGAAATAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
39981839 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
*
39981864 -AAAT--AAAG-ATAAAAGTGAAAAT
1 AAAATAAAAAGTATTAAA-TGAAAAT
39981886 AAAAATAAAAA
1 -AAAATAAAAA
39981897 TTAAAAATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
20 4 0.09
21 1 0.02
22 9 0.19
24 8 0.17
25 12 0.26
26 13 0.28
ACGTcount: A:0.68, C:0.01, G:0.11, T:0.20
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:39981902 original size:18 final size:18
Alignment explanation
Indices: 39981864--39981902 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
39981854 TAAAGAAGAT
* *
39981864 AAATAAAGATAAAAGTGA
1 AAATAAAAATAAAAATGA
*
39981882 AAATAAAAATAAAAATTA
1 AAATAAAAATAAAAATGA
39981900 AAA
1 AAA
39981903 ATTCTTTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (18 bp):
AAATAAAAATAAAAATGA
Found at i:39996713 original size:30 final size:30
Alignment explanation
Indices: 39996656--39996713 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
39996646 CACAGGCTGC
* *
39996656 CACATGGGTGTGTGGCCATCCCATGTGGTT
1 CACACGGGTGTGTGGCCAGCCCATGTGGTT
*
39996686 CACACGGGTGTGT-GCTCAGCCCGTGTGG
1 CACACGGGTGTGTGGC-CAGCCCATGTGG
39996714 GATTGGCTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.12, C:0.26, G:0.36, T:0.26
Consensus pattern (30 bp):
CACACGGGTGTGTGGCCAGCCCATGTGGTT
Found at i:40001730 original size:30 final size:30
Alignment explanation
Indices: 40001695--40001755 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
40001685 AAATTAAATA
40001695 ATAAATCCAACCATATAAAGTATGTTCCTT
1 ATAAATCCAACCATATAAAGTATGTTCCTT
40001725 ATAAATCCAACCATATAAAGTATGTTCCTT
1 ATAAATCCAACCATATAAAGTATGTTCCTT
40001755 A
1 A
40001756 ACTATCTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.33
Consensus pattern (30 bp):
ATAAATCCAACCATATAAAGTATGTTCCTT
Found at i:40002350 original size:38 final size:38
Alignment explanation
Indices: 40002297--40002664 Score: 306
Period size: 38 Copynumber: 9.0 Consensus size: 38
40002287 TTTCAAATTA
* *
40002297 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
* * *
40002335 ACATGTTTAAACGTGGTATATCCACTTAGTACCACGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
* * * *
40002376 GAATCAATATATGTAATCATGGCATATCCACTTAGGACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* *
40002420 ACATGTTTAACCATGGTATATCCACTTA-CACCACGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
*
40002460 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
*
40002504 TCATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
* * *
40002542 TCATGTTTAACCGTGGTATATCCACTTAGCACCACATTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCAC-GT--T
* *
40002583 GAATCAATATATGTAACCGTGGCATATCCACTTCGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* *
40002627 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
40002665 TTTTCATTCT
Statistics
Matches: 272, Mismatches: 30, Indels: 56
0.76 0.08 0.16
Matches are distributed among these distances:
37 6 0.02
38 145 0.53
39 4 0.01
40 10 0.04
41 5 0.02
42 3 0.01
43 2 0.01
44 8 0.03
45 7 0.03
46 24 0.09
47 58 0.21
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:40002500 original size:84 final size:85
Alignment explanation
Indices: 40002304--40002541 Score: 388
Period size: 84 Copynumber: 2.8 Consensus size: 85
40002294 TTAACATGTA
* * *
40002304 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAAACGTGGTATATCCACTTAGTACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
40002369 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * * *
40002389 TAATCATGGCATATCCACTTAGGACCACGTTACATGTTTAACCATGGTATATCCACTTA-CACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
40002453 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* *
40002473 TAACCGTGGCATATCCACTTAGCACCACGTTTCATGTTTAACCGTGGCATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
40002538 CGTT
66 CGTT
40002542 TCATGTTTAA
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
84 77 0.55
85 62 0.45
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:40002622 original size:123 final size:122
Alignment explanation
Indices: 40002395--40002665 Score: 461
Period size: 123 Copynumber: 2.2 Consensus size: 122
40002385 TATGTAATCA
* * *
40002395 TGGCATATCCACTTAGGACCACGTTACATGTTTAACCATGGTATATCCACTTACACCACGTTAAT
1 TGGCATATCCACTTAGCACCACGTTTCATGTTTAACCATGGTATATCCACTTACACCACATTAAT
* *
40002460 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTTCATGTTTAACCG
66 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATAACCG
*
40002517 TGGCATATCCACTTAGCACCACGTTTCATGTTTAACCGTGGTATATCCACTTAGCACCACATTAA
1 TGGCATATCCACTTAGCACCACGTTTCATGTTTAACCATGGTATATCCACTTA-CACCACATTAA
*
40002582 TGAATCAATATATGTAACCGTGGCATATCCACTTCGCACCACGTTACATGTATAACCG
65 TGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATAACCG
*
40002640 TGGTATATCCACTTAGCACCACGTTT
1 TGGCATATCCACTTAGCACCACGTTT
40002666 TTTCATTCTG
Statistics
Matches: 140, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
122 50 0.36
123 90 0.64
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (122 bp):
TGGCATATCCACTTAGCACCACGTTTCATGTTTAACCATGGTATATCCACTTACACCACATTAAT
GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATAACCG
Found at i:40003227 original size:28 final size:28
Alignment explanation
Indices: 40003187--40003244 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
40003177 CTAAAAATCA
40003187 TATTTTTACAAATTTTCATTTTGATCCC
1 TATTTTTACAAATTTTCATTTTGATCCC
40003215 TATTTTTACAAATTTTCATTTTGATCCC
1 TATTTTTACAAATTTTCATTTTGATCCC
40003243 TA
1 TA
40003245 AACTTTTGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.17, G:0.03, T:0.53
Consensus pattern (28 bp):
TATTTTTACAAATTTTCATTTTGATCCC
Found at i:40004256 original size:40 final size:40
Alignment explanation
Indices: 40004148--40004257 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
40004138 ATTGAATGAT
* * * * *
40004148 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
40004188 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
40004228 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
40004258 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:40007885 original size:15 final size:15
Alignment explanation
Indices: 40007862--40007903 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
40007852 AGAACCCAGA
40007862 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
40007877 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
40007892 ATAAGGAAATCC
1 ATAAGGAAATCC
40007904 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:40009330 original size:27 final size:27
Alignment explanation
Indices: 40009300--40009441 Score: 193
Period size: 27 Copynumber: 5.3 Consensus size: 27
40009290 GTGACGAATT
40009300 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
40009327 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
40009354 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
40009381 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
40009408 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
40009435 CACCAGA
1 CACCAGA
40009442 ACGCTTCCTC
Statistics
Matches: 103, Mismatches: 5, Indels: 14
0.84 0.04 0.11
Matches are distributed among these distances:
26 10 0.10
27 89 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:40009372 original size:54 final size:54
Alignment explanation
Indices: 40009300--40009443 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
40009290 GTGACGAATT
*
40009300 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
40009354 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
40009408 CACCAGATCAGATAATTGTGGCATAGCCACCAGAAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAAC
40009444 GCTTCCTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:40009846 original size:8 final size:8
Alignment explanation
Indices: 40009829--40009859 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
40009819 TCTCAAAATA
40009829 TCGGCTTT
1 TCGGCTTT
*
40009837 TCGGCATT
1 TCGGCTTT
40009845 TCGGCTTT
1 TCGGCTTT
40009853 TCGGCTT
1 TCGGCTT
40009860 GTGCCGATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.26, G:0.26, T:0.45
Consensus pattern (8 bp):
TCGGCTTT
Found at i:40014221 original size:38 final size:41
Alignment explanation
Indices: 40014178--40014679 Score: 323
Period size: 38 Copynumber: 11.7 Consensus size: 41
40014168 TTAACATGTA
*
40014178 TAACCGTGGCATATCCACTTAGCACCACGTTAC-AT-T-TT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
*
40014216 TAACCGTGGTATATCCACTTAGCACCACGTTAATAAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-CAATATATT
** * *
40014263 TAACCGTGACATATCCATTTAGCACCACGTTAC---ATGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
* * * *
40014301 TAACCATGGTATATCCACATAGCAACACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-CAATATATT
* *
40014348 TAACCGTGGCATATCCACTTAGCACCACGTTAC---ATGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
* *
40014386 TAGCCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-CAATATATT
*
40014433 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA---AT--ATAT-T
* *
40014480 CTAATCGTGGTATATCCACTTAGCACCACGTTAC-ATGTA--
1 -TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
* *
40014519 TAACCGTGGTAGATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACG-T--T--A-CAATATATT
** *
40014566 TAACCGTGACAAATCCACTTAGCACCACGTTACATGTATCAATATGT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA---AT--ATAT-T
* *
40014613 GTAATCGTGGTATATCCACTTAGCACCACGTTAC-ATGTA--
1 -TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
* *
40014652 TAACCGTGGTAAATCCACTTAGTACCAC
1 TAACCGTGGTATATCCACTTAGCACCAC
40014680 ATTTTTTCAT
Statistics
Matches: 368, Mismatches: 46, Indels: 100
0.72 0.09 0.19
Matches are distributed among these distances:
38 136 0.37
39 4 0.01
41 10 0.03
42 8 0.02
43 4 0.01
44 16 0.04
45 6 0.02
46 13 0.04
47 111 0.30
48 60 0.16
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (41 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACAATATATT
Found at i:40014270 original size:85 final size:85
Alignment explanation
Indices: 40014178--40014679 Score: 554
Period size: 85 Copynumber: 5.8 Consensus size: 85
40014168 TTAACATGTA
*
40014178 TAACCGTGGCATATCCACTTAGCACCACGTTACATTTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
40014243 CGTTAATAAATCAATATATG
66 CGTTAATGAATCAATATATG
* * * * *
40014263 TAACCGTGACATATCCATTTAGCACCACGTTACATGTTTAACCATGGTATATCCACATAGCAACA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
40014328 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
40014348 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAGCCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
40014413 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
40014433 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTCTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATG--------T-T-TAACCGTGGTATATCCA
*
40014498 CTTAGCACCACG-T--T--A-C-ATGTA--
56 CTTAGCACCACGTTAATGAATCAATATATG
* * * ** *
40014519 TAACCGTGGTAGATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGACAAATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-TAACCGTGGTATATCCAC
* *
40014584 TTAGCACCACGTTACATGTATCAATATGTG
57 TTAGCACCACGTTA-ATGAATCAATATATG
* * * * *
40014614 TAATCGTGGTATATCCACTTAGCACCACGTTACATGTATAACCGTGGTAAATCCACTTAGTACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
40014679 C
66 C
40014680 ATTTTTTCAT
Statistics
Matches: 356, Mismatches: 34, Indels: 53
0.80 0.08 0.12
Matches are distributed among these distances:
85 220 0.62
86 53 0.15
87 1 0.00
88 7 0.02
89 4 0.01
90 2 0.01
91 2 0.01
92 4 0.01
93 6 0.02
94 3 0.01
95 54 0.15
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:40014495 original size:48 final size:48
Alignment explanation
Indices: 40014389--40014652 Score: 336
Period size: 48 Copynumber: 5.8 Consensus size: 48
40014379 ACATGTTTAG
*
40014389 CCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
* * *
40014436 CCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTCTAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
*
40014484 TCGTGGTATATCCACTTAGCACCACGTTACATG--------TA--TAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
* *
40014522 CCGTGGTAGATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
** * *
40014569 CCGTGACAAATCCACTTAGCACCACGTTACATGTATCAATATGTGTAA
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
*
40014617 TCGTGGTATATCCACTTAGCACCACGTTACATGTAT
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTAT
40014653 AACCGTGGTA
Statistics
Matches: 187, Mismatches: 18, Indels: 23
0.82 0.08 0.10
Matches are distributed among these distances:
37 3 0.02
38 30 0.16
40 1 0.01
45 2 0.01
47 57 0.30
48 94 0.50
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (48 bp):
CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAA
Found at i:40014538 original size:133 final size:133
Alignment explanation
Indices: 40014301--40014679 Score: 607
Period size: 133 Copynumber: 2.9 Consensus size: 133
40014291 GTTACATGTT
* * * * * * * *
40014301 TAACCATGGTATATCCACATAGCAACACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
* * *
40014365 CTTAGCACCACGTTACATGTTTAGCCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATAT
66 CTTAGCACCACGTTACATGTATAACCGTGGTAAATCCACTTAGCACCACGTTAATGAATCAATAT
40014430 ATG
131 ATG
*
40014433 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTCTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
*
40014498 CTTAGCACCACGTTACATGTATAACCGTGGTAGATCCACTTAGCACCACGTTAATGAATCAATAT
66 CTTAGCACCACGTTACATGTATAACCGTGGTAAATCCACTTAGCACCACGTTAATGAATCAATAT
40014563 ATG
131 ATG
* *
40014566 TAACCGTGACAAATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
*
40014631 CTTAGCACCACGTTACATGTATAACCGTGGTAAATCCACTTAGTACCAC
66 CTTAGCACCACGTTACATGTATAACCGTGGTAAATCCACTTAGCACCAC
40014680 ATTTTTTCAT
Statistics
Matches: 229, Mismatches: 17, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
132 28 0.12
133 201 0.88
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (133 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
CTTAGCACCACGTTACATGTATAACCGTGGTAAATCCACTTAGCACCACGTTAATGAATCAATAT
ATG
Found at i:40017410 original size:15 final size:15
Alignment explanation
Indices: 40017387--40017428 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
40017377 GAAGCCCAGA
40017387 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
40017402 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
40017417 ATAAGGAAATCC
1 ATAAGGAAATCC
40017429 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:40020133 original size:38 final size:38
Alignment explanation
Indices: 40020084--40020278 Score: 219
Period size: 38 Copynumber: 4.9 Consensus size: 38
40020074 TTTCAAGTTA
* *
40020084 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
* *
40020122 ACATTTTTAACCGTGGTATATCCACTTAGTACCACGTTAAT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACG-T--T
* * *
40020163 AAATCAATATATGTAACCGTGGCATATCCACTTAGCACCATGTT
1 --A-C-ATGT-T-TAACCGTGGTATATCCACTTAGCACCACGTT
*
40020207 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
**
40020245 ACATGGATAACCGTGGTATATCCACTTAGCACCA
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCA
40020279 TGTTTTTTTA
Statistics
Matches: 133, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
38 91 0.68
39 2 0.02
40 3 0.02
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.02
46 2 0.02
47 26 0.20
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:40026671 original size:21 final size:21
Alignment explanation
Indices: 40026629--40026672 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
40026619 TTTTGATGTC
*
40026629 TAATGGTAGATTATACAATTT
1 TAATGGTAGATTAAACAATTT
*
40026650 TAATGTTAGA-TAAACAACTTT
1 TAATGGTAGATTAAACAA-TTT
40026671 TA
1 TA
40026673 CTAGGTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (21 bp):
TAATGGTAGATTAAACAATTT
Found at i:40036162 original size:21 final size:21
Alignment explanation
Indices: 40036138--40036181 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
40036128 TCTATTTTCT
40036138 TGAT-ATAATTGGCTATATG-CA
1 TGATAATAA-TGGCTA-ATGTCA
40036159 TGATAATAATGGCTAATGTCA
1 TGATAATAATGGCTAATGTCA
40036180 TG
1 TG
40036182 TTTTCATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.14
21 14 0.67
22 4 0.19
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (21 bp):
TGATAATAATGGCTAATGTCA
Found at i:40036876 original size:46 final size:45
Alignment explanation
Indices: 40036740--40036961 Score: 183
Period size: 46 Copynumber: 4.8 Consensus size: 45
40036730 GGTAAGTTAT
*
40036740 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTA-TCATCACCGAGGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTACTC-TCA---AGGC
*
40036789 CGATGCTATGTCCCAGACATGGTCTTACACTGACATA-TCTCATA-GC
1 CGATGC-ATGTCCCAGACATGGTCTTACACTGGC-TACTCTCA-AGGC
40036835 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGC-TAC-TCTCAAGGC
* * *
40036881 C-ACTGTATGTCCCAGACAT-GTCTTACACTAGC-ACTCGTCTTAATGC
1 CGA-TGCATGTCCCAGACATGGTCTTACACTGGCTACTC-TC--AAGGC
40036927 C-ATTGCCATGTCCC-GAACATGGTCTTACACTGGCT
1 CGA-TG-CATGTCCCAG-ACATGGTCTTACACTGGCT
40036962 CTCATAATGT
Statistics
Matches: 149, Mismatches: 11, Indels: 26
0.80 0.06 0.14
Matches are distributed among these distances:
43 2 0.01
44 18 0.12
45 15 0.10
46 52 0.35
47 12 0.08
48 13 0.09
49 33 0.22
50 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTACTCTCAAGGC
Found at i:40041680 original size:40 final size:39
Alignment explanation
Indices: 40041635--40041764 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
40041625 CGGAATATAA
40041635 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * * *
40041675 CCGGATAGAATGTC-TCGCACGAATGCCTTCGAGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
40041715 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
40041755 CCGGATATAA
1 CCGGATATAA
40041765 TTTCTAGCAT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:40041772 original size:40 final size:40
Alignment explanation
Indices: 40041651--40041802 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
40041641 ATAACCATGT
* * * *
40041651 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCTA
* * ** *
40041691 GCACGAA-TGCCTTCGAGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCTA
* *
40041731 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCTA
* *
40041771 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
40041803 CATTCAATTT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCTA
Found at i:40041785 original size:80 final size:80
Alignment explanation
Indices: 40041651--40041800 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
40041641 ATAACCATGT
* *
40041651 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGAG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTAGCACGAATGCCTTCGAGAT-TTAGC
40041715 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * * *
40041731 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCTAGCA-TAATTGTCTTCGGGATTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTAGCACGAA-TGCCTTCGAGATTTAGC
40041795 CCGGAT
65 CCGGAT
40041801 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.03
80 57 0.95
81 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTAGCACGAATGCCTTCGAGATTTAGCC
CGGATGTAGCCACTA
Found at i:40046383 original size:40 final size:40
Alignment explanation
Indices: 40046338--40046505 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
40046328 CGGAATATAA
40046338 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
40046378 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
40046418 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
40046458 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
40046498 CCGGATAT
1 CCGGATAT
40046506 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:40046488 original size:80 final size:80
Alignment explanation
Indices: 40046354--40046503 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
40046344 ATAACCACGT
* *
40046354 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
40046419 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
40046434 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
40046497 CCCGGAT
64 CCCGGAT
40046504 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:40050991 original size:46 final size:48
Alignment explanation
Indices: 40050809--40051077 Score: 175
Period size: 46 Copynumber: 5.7 Consensus size: 48
40050799 GGGTAAGTTA
* * * *
40050809 CCGATGCCATGTCCCCAACATGGTCTTACACTAGCTCTCGCATATCCG-TG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACTCG--TCT-CGAGG
* * *
40050859 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-G
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACTCGTCTCG-AGG
* * * *
40050905 CCGATG-CATCTCCCAGACAT-GTCTTACACTGGC-TTACGTCTCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACT-CGTCTCGAGG
* ** *
40050951 CTGATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCGTCTTAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACTCGTCTCGAGG
* * * * * * * *
40050997 TCGTTGCCATGTCCCGAACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACTCGT-CTCGAGG
* *
40051045 CCGATG-CATGTCCCAGACAT-GTTTTACACTAGC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGC
40051078 TCACGCAAGT
Statistics
Matches: 174, Mismatches: 35, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
44 10 0.06
45 17 0.10
46 66 0.38
47 26 0.15
48 23 0.13
49 2 0.01
50 30 0.17
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACTCGTCTCGAGG
Found at i:40051074 original size:140 final size:140
Alignment explanation
Indices: 40050811--40051074 Score: 324
Period size: 140 Copynumber: 1.9 Consensus size: 140
40050801 GTAAGTTACC
* *
40050811 GATGCCATGTCCCCAACATGGTCTTACACTAGCTCTCGCATATCCGTGCCGATGCCATGTCCCAG
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACTCGCATAT-CGT-CCGATGCCATGTCCCAG
40050876 ACATGGTCTTACACTGACACATCTCGTAGCCGATGCATCTCCCAGACATGTCTTACACTGGCTTA
64 ACATGGTCTTACACTGACACATCTCGTAGCCGATGCATCTCCCAGACATGTCTTACACTGGCTTA
40050941 CGTCTCGAGGCT
129 CGTCTCGAGGCT
* *
40050953 GATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCGTCTTAAT-GT-CGTTGCCATGTCCC-G
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACTCG-CAT-ATCGTCCGATGCCATGTCCCAG
* * * * * *
40051013 AACATGGTCTTACACTGGCTC-TCATAATGTGGCCGATGCATGTCCCAGACATGTTTTACACT
64 -ACATGGTCTTACACTGACACATC-T--CGTAGCCGATGCATCTCCCAGACATGTCTTACACT
40051075 AGCTCACGCA
Statistics
Matches: 106, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
137 3 0.03
138 32 0.30
140 50 0.47
141 15 0.14
142 6 0.06
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (140 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCACTCGCATATCGTCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACACATCTCGTAGCCGATGCATCTCCCAGACATGTCTTACACTGGCTTACG
TCTCGAGGCT
Found at i:40054053 original size:39 final size:38
Alignment explanation
Indices: 40054010--40054184 Score: 176
Period size: 39 Copynumber: 4.5 Consensus size: 38
40054000 TTTAAATTCA
* * *
40054010 GATATATGTCCAGCACATAGCCTGCGGACCTAAAGTCTG
1 GATATAT-TCCAGCATATAGCCTGCGGACCTGAAGTCCG
* * *
40054049 GATATTATTCTAGCATATAGCCTGCGGACATGAAGTCCA
1 GATA-TATTCCAGCATATAGCCTGCGGACCTGAAGTCCG
40054088 GATATAATTCTC-GCATATAGCCTGCGGACCTGAAGTCCG
1 GATAT-ATTC-CAGCATATAGCCTGCGGACCTGAAGTCCG
* * *
40054127 GATATAACTCTC-GCTTATAGCCTACGGACCTGAAGTCCG
1 GATAT-ATTC-CAGCATATAGCCTGCGGACCTGAAGTCCG
40054166 GATATAATTCTC-GCATATA
1 GATAT-ATTC-CAGCATATA
40054185 TATATTTACA
Statistics
Matches: 119, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 115 0.97
40 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (38 bp):
GATATATTCCAGCATATAGCCTGCGGACCTGAAGTCCG
Found at i:40054112 original size:78 final size:78
Alignment explanation
Indices: 40054026--40054184 Score: 237
Period size: 78 Copynumber: 2.0 Consensus size: 78
40054016 TGTCCAGCAC
* * * *
40054026 ATAGCCTGCGGACCTAAAGTCTGGATATTATTCTAGCATATAGCCTGCGGACATGAAGTCCAGAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAACTCTAGCATATAGCCTACGGACATGAAGTCCAGAT
40054091 ATAATTCTCGCAT
66 ATAATTCTCGCAT
* * * * *
40054104 ATAGCCTGCGGACCTGAAGTCCGGATATAACTCTCGCTTATAGCCTACGGACCTGAAGTCCGGAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAACTCTAGCATATAGCCTACGGACATGAAGTCCAGAT
40054169 ATAATTCTCGCAT
66 ATAATTCTCGCAT
40054182 ATA
1 ATA
40054185 TATATTTACA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (78 bp):
ATAGCCTGCGGACCTAAAGTCCGGATATAACTCTAGCATATAGCCTACGGACATGAAGTCCAGAT
ATAATTCTCGCAT
Found at i:40078818 original size:16 final size:16
Alignment explanation
Indices: 40078793--40078825 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
40078783 ACGGTATTCT
*
40078793 ATATTTTATAGTAGCA
1 ATATTCTATAGTAGCA
40078809 ATATTCTATAGTAGCA
1 ATATTCTATAGTAGCA
40078825 A
1 A
40078826 AGGAATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGTAGCA
Found at i:40081572 original size:28 final size:27
Alignment explanation
Indices: 40081519--40081602 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 27
40081509 CACTTTGTGC
40081519 TATTCTGGTGTGCTTTGGATGGATTATAT
1 TATTCTGGTGTG-TTTGGA-GGATTATAT
*
40081548 TATTCTTGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTT-GGAGGATTATAT
* *
40081576 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTG-TTTGGAGGATTATA
40081603 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.19, C:0.05, G:0.30, T:0.46
Consensus pattern (27 bp):
TATTCTGGTGTGTTTGGAGGATTATAT
Found at i:40095042 original size:30 final size:30
Alignment explanation
Indices: 40095001--40095060 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
40094991 CCAAAATGAG
40095001 ATCAATAGTGTGGTGACGATCCTCGACTAT
1 ATCAATAGTGTGGTGACGATCCTCGACTAT
*
40095031 ATCAATGGTGTGGTGACGATCCTCGACTAT
1 ATCAATAGTGTGGTGACGATCCTCGACTAT
40095061 CCCCGAGCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (30 bp):
ATCAATAGTGTGGTGACGATCCTCGACTAT
Found at i:40095521 original size:42 final size:43
Alignment explanation
Indices: 40095475--40095581 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
40095465 TTGATGCCTT
* *
40095475 TGTCCCAGACAGGGTCTTACACG-AAATC-AAATACGATGCCGA
1 TGTCCCAGACACGGTCTTACACGTAAATCTAAAT-CGAGGCCGA
* * * * *
40095517 TGTCCTAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTA
1 TGTCCCAGACACGGTCTTACACGTAAATCTAAATCGAGGCCGA
*
40095560 TGTCCCAGATACGGTCTTACAC
1 TGTCCCAGACACGGTCTTACAC
40095582 AATGTCTCAG
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 20 0.38
43 30 0.57
44 3 0.06
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACACGGTCTTACACGTAAATCTAAATCGAGGCCGA
Found at i:40102985 original size:43 final size:41
Alignment explanation
Indices: 40102841--40102991 Score: 124
Period size: 43 Copynumber: 3.6 Consensus size: 41
40102831 CAATGCCGAC
* * * * *
40102841 GTCCCGGACATGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACACGGTCTTACACG-AAATCAA-ATCGATGCCTAT
**
40102884 GTCCCAGACTGGGTCTTACACGAAATCAAATACGATGCC-AGT
1 GTCCCAGACACGGTCTTACACGAAATCAAAT-CGATGCCTA-T
* ** * * *
40102926 GTCTCAGACATAGTCTTATACGTAAATCTCAATCGAGGCCTAT
1 GTCCCAGACACGGTCTTACACG-AAATC-AAATCGATGCCTAT
40102969 GTCCCAGACACGGTCTTACACGA
1 GTCCCAGACACGGTCTTACACGA
40102992 TGTCTCAGAC
Statistics
Matches: 86, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 32 0.37
43 48 0.56
44 4 0.05
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (41 bp):
GTCCCAGACACGGTCTTACACGAAATCAAATCGATGCCTAT
Found at i:40106452 original size:12 final size:12
Alignment explanation
Indices: 40106435--40106466 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
40106425 ATTAAGAAAT
40106435 TATATATATGTA
1 TATATATATGTA
40106447 TATATATATGTA
1 TATATATATGTA
40106459 TATATATA
1 TATATATA
40106467 AAGCCTAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (12 bp):
TATATATATGTA
Found at i:40108117 original size:12 final size:12
Alignment explanation
Indices: 40108100--40108131 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
40108090 ATTTGTACCA
40108100 AAAATTAATTTT
1 AAAATTAATTTT
40108112 AAAATTAATTTT
1 AAAATTAATTTT
*
40108124 AAATTTAA
1 AAAATTAA
40108132 ATACATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AAAATTAATTTT
Found at i:40111891 original size:18 final size:18
Alignment explanation
Indices: 40111870--40111904 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
40111860 TAACTTAAAC
* *
40111870 ATGGTAAGTTTTTTAAGA
1 ATGGCAAGTTTTCTAAGA
40111888 ATGGCAAGTTTTCTAAG
1 ATGGCAAGTTTTCTAAG
40111905 CAAGCAATGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (18 bp):
ATGGCAAGTTTTCTAAGA
Found at i:40112431 original size:21 final size:21
Alignment explanation
Indices: 40112392--40112431 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
40112382 TGTCAAATTT
** *
40112392 AGGTATCGATATCATTTATCG
1 AGGTATCGATAAAAGTTATCG
40112413 AGGTATCGATAAAAGTTAT
1 AGGTATCGATAAAAGTTAT
40112432 AAATTTATTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (21 bp):
AGGTATCGATAAAAGTTATCG
Found at i:40118321 original size:43 final size:42
Alignment explanation
Indices: 40118274--40118427 Score: 170
Period size: 43 Copynumber: 3.6 Consensus size: 42
40118264 GTGTTCTAGA
*
40118274 GTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATT-CGT
** * * *
40118317 GTAAGACCTTGTCTGGTACATTGGCATC-ATATTTGATTCGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTCGT
**
40118358 GTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTGCAC
1 GTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATT-CGT
*
40118401 GTAAGACTACGTCTGGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
40118428 TGTACGATAT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 26 0.28
42 19 0.21
43 46 0.50
44 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTCGT
Found at i:40118415 original size:84 final size:84
Alignment explanation
Indices: 40118274--40118427 Score: 197
Period size: 84 Copynumber: 1.8 Consensus size: 84
40118264 GTGTTCTAGA
** * *
40118274 GTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACGTGTAAGACCTTGTCTGGTACATT
1 GTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACACGTAAGACCTCGTCTGGGACATT
40118339 GGCATCATATTTGATTCGT
66 GGCATCATATTTGATTCGT
* *
40118358 GTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTGCACGTAAGA-CTACGTCTGGGAC
1 GTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATGTGATTACACGTAAGACCT-CGTCTGGGAC
*
40118420 GTTGGCAT
63 ATTGGCAT
40118428 TGTACGATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
83 3 0.05
84 56 0.93
85 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (84 bp):
GTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACACGTAAGACCTCGTCTGGGACATT
GGCATCATATTTGATTCGT
Found at i:40120858 original size:10 final size:10
Alignment explanation
Indices: 40120845--40120913 Score: 53
Period size: 9 Copynumber: 7.4 Consensus size: 10
40120835 AAATTCTTTA
40120845 AAAAAATTAT
1 AAAAAATTAT
40120855 AAAAAA-TAT
1 AAAAAATTAT
40120864 AAAAAGTATT-T
1 AAAAA--ATTAT
*
40120875 AAAAAATTCT
1 AAAAAATTAT
40120885 -AAAAATT-T
1 AAAAAATTAT
*
40120893 TAAAAA-TA-
1 AAAAAATTAT
40120901 AAAAAA-TAT
1 AAAAAATTAT
40120910 AAAA
1 AAAA
40120914 TTACAAAAGC
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
8 9 0.18
9 27 0.53
10 7 0.14
11 7 0.14
12 1 0.02
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:40120960 original size:28 final size:29
Alignment explanation
Indices: 40120929--40120998 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 29
40120919 AAAGCAAAAC
*
40120929 AAAAATATTA-CAATTTTAATAAAATTTA
1 AAAAATATTAGAAATTTTAATAAAATTTA
**
40120957 AAAAA-ATTAGAAATTTTAATATTATTTA
1 AAAAATATTAGAAATTTTAATAAAATTTA
*
40120985 AAAAAT-TTATAAAT
1 AAAAATATTAGAAAT
40120999 CATATTTACT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 4 0.11
28 32 0.89
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (29 bp):
AAAAATATTAGAAATTTTAATAAAATTTA
Found at i:40121300 original size:8 final size:8
Alignment explanation
Indices: 40121258--40121308 Score: 50
Period size: 8 Copynumber: 6.1 Consensus size: 8
40121248 TTATTAAAAA
40121258 TTTAT-AT
1 TTTATAAT
*
40121265 TTTATATT
1 TTTATAAT
40121273 TTTAAATAAT
1 TTT--ATAAT
40121283 TTTAATAAT
1 TTT-ATAAT
40121292 TTTATAAT
1 TTTATAAT
*
40121300 TTTAAAAT
1 TTTATAAT
40121308 T
1 T
40121309 ATTTTATAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
7 5 0.13
8 17 0.45
9 9 0.24
10 7 0.18
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTTATAAT
Found at i:40121312 original size:28 final size:27
Alignment explanation
Indices: 40121258--40121330 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
40121248 TTATTAAAAA
*
40121258 TTTAT-ATTTTAT-ATTTTTAAATAAT
1 TTTATAATTTTATAATTTTAAAATAAT
*
40121283 TTTAATAATTTTATAATTTTAAAATTAT
1 TTT-ATAATTTTATAATTTTAAAATAAT
*
40121311 TTTATAAGTTTTCTAATTTT
1 TTTATAA-TTTTATAATTTT
40121331 TTTTTGTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 3 0.07
26 2 0.05
27 11 0.27
28 25 0.61
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (27 bp):
TTTATAATTTTATAATTTTAAAATAAT
Found at i:40121333 original size:20 final size:19
Alignment explanation
Indices: 40121278--40121322 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
40121268 ATATTTTTAA
*
40121278 ATAATTTT--AATAATTTT
1 ATAATTTTAAAATTATTTT
40121295 ATAATTTTAAAATTATTTT
1 ATAATTTTAAAATTATTTT
40121314 ATAAGTTTT
1 ATAA-TTTT
40121323 CTAATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 8 0.33
19 12 0.50
20 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
ATAATTTTAAAATTATTTT
Found at i:40123605 original size:29 final size:29
Alignment explanation
Indices: 40123572--40123631 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
40123562 TCCAATGGAC
40123572 ATTAAAGTCCTAAAGTAATCAAATTTTTT
1 ATTAAAGTCCTAAAGTAATCAAATTTTTT
40123601 ATTAAAGTCCTAAAGTAATCAAATTTTTT
1 ATTAAAGTCCTAAAGTAATCAAATTTTTT
40123630 AT
1 AT
40123632 CCTAATGGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.42
Consensus pattern (29 bp):
ATTAAAGTCCTAAAGTAATCAAATTTTTT
Found at i:40127046 original size:37 final size:36
Alignment explanation
Indices: 40126996--40127082 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
40126986 TACGAAGTCT
40126996 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
40127032 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
40127069 TCACCCGGAACATA
1 T-ACCCGG-ACATA
40127083 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:40127201 original size:51 final size:49
Alignment explanation
Indices: 40127131--40127228 Score: 133
Period size: 49 Copynumber: 2.0 Consensus size: 49
40127121 ATTCACATTA
* * * *
40127131 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTACCAC--ATATACATACACTTTCACATTCACCACATCG
*
40127182 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACAT
1 GCCATTAGGCCTTACCACATATACATACACTTTCACATTCACCACAT
40127229 ATCACATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 27 0.64
51 15 0.36
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.32
Consensus pattern (49 bp):
GCCATTAGGCCTTACCACATATACATACACTTTCACATTCACCACATCG
Found at i:40127219 original size:18 final size:18
Alignment explanation
Indices: 40127196--40127253 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
40127186 TTAGGCCTTA
40127196 TCACATATACATACACTT
1 TCACATATACATACACTT
* *
40127214 TCACAT-T-CA-CCACATA
1 TCACATATACATACAC-TT
*
40127230 TCACATATACATATACTT
1 TCACATATACATACACTT
40127248 TCACAT
1 TCACAT
40127254 TCACCACATC
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
15 3 0.10
16 9 0.29
17 2 0.06
18 15 0.48
19 2 0.06
ACGTcount: A:0.38, C:0.29, G:0.00, T:0.33
Consensus pattern (18 bp):
TCACATATACATACACTT
Found at i:40127220 original size:49 final size:49
Alignment explanation
Indices: 40127151--40127545 Score: 405
Period size: 49 Copynumber: 8.4 Consensus size: 49
40127141 TTTACCACAT
*
40127151 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
40127200 ATATACATACACTTTCACATTCACCACAT-----ATCA---CATAT-AC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * * *
40127240 ATATACTTTCACATTCACCA--CATCGGCCATTAGGCC--T------TATCAC
1 ATATACATACACTTTCA-CATTCATC--ACA-TCGGCCATTAGGCCTTATCAC
*
40127283 ATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
40127332 ATATACATACACTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
40127381 ATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
40127430 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
40127479 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGTCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
40127528 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
40127546 GAATCTTGAT
Statistics
Matches: 297, Mismatches: 29, Indels: 40
0.81 0.08 0.11
Matches are distributed among these distances:
39 3 0.01
40 16 0.05
41 13 0.04
42 8 0.03
43 16 0.05
44 7 0.02
49 234 0.79
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:40127237 original size:34 final size:34
Alignment explanation
Indices: 40127194--40127262 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
40127184 CATTAGGCCT
40127194 TATCACATATACATACACTTTCACATTCACCACA
1 TATCACATATACATACACTTTCACATTCACCACA
*
40127228 TATCACATATACATATACTTTCACATTCACCACA
1 TATCACATATACATACACTTTCACATTCACCACA
40127262 T
1 T
40127263 CGGCCATTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.32
Consensus pattern (34 bp):
TATCACATATACATACACTTTCACATTCACCACA
Found at i:40127252 original size:83 final size:84
Alignment explanation
Indices: 40127146--40127311 Score: 280
Period size: 83 Copynumber: 2.0 Consensus size: 84
40127136 TCGGCTTTAC
* *
40127146 CACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACA
1 CACATATACATATA-ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACA
40127211 CTTTCACATTCACCACATAT
65 CTTTCACATTCACCACATAT
*
40127231 CACATATACATAT-ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATAC
1 CACATATACATATAACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACAC
*
40127295 TTTCACATTCATCACAT
66 TTTCACATTCACCACAT
40127312 CGGCCATTAG
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
83 65 0.84
85 12 0.16
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.32
Consensus pattern (84 bp):
CACATATACATATAACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACAC
TTTCACATTCACCACATAT
Found at i:40127346 original size:98 final size:98
Alignment explanation
Indices: 40127229--40127545 Score: 499
Period size: 98 Copynumber: 3.2 Consensus size: 98
40127219 TTCACCACAT
* * *
40127229 ATCACATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATA
1 ATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACA
* *
40127294 CTTTCACATTCATCACATCGGCCATTAGGCCTT
66 TTTTCACATTCATCACATCGGCCATTAGGCCTC
* * * *
40127327 ATCACATATACATACACTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACA
1 ATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACA
*
40127392 TTTTCGCATTCATCACATCGGCCATTAGGCCTC
66 TTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
40127425 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACA
1 ATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACA
*
40127490 TTTTCACATTCATCACATCGGCCATTAGGTCTC
66 TTTTCACATTCATCACATCGGCCATTAGGCCTC
* *
40127523 ATCACATATATATACATTTTCAC
1 ATCACATATACATACACTTTCAC
40127546 GAATCTTGAT
Statistics
Matches: 201, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 201 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (98 bp):
ATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACA
TTTTCACATTCATCACATCGGCCATTAGGCCTC
Found at i:40127409 original size:147 final size:147
Alignment explanation
Indices: 40127229--40127545 Score: 517
Period size: 147 Copynumber: 2.2 Consensus size: 147
40127219 TTCACCACAT
* * * * *
40127229 ATCACATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATA
1 ATCACATATATATACATTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
* *
40127294 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCGCATTCATCGC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCAC
40127359 ATCGGCCATTAGGCCTC
131 ATCGGCCATTAGGCCTC
* * *
40127376 ATCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCACATATATATACA
1 ATCACATATATATACATTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
* *
40127441 TTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACATTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCAC
*
40127506 ATCGGCCATTAGGTCTC
131 ATCGGCCATTAGGCCTC
40127523 ATCACATATATATACATTTTCAC
1 ATCACATATATATACATTTTCAC
40127546 GAATCTTGAT
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
147 156 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (147 bp):
ATCACATATATATACATTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTC
Found at i:40130141 original size:28 final size:28
Alignment explanation
Indices: 40130108--40130202 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
40130098 GGGAAATTTC
* *
40130108 TCACTTTGCACAATGCCATGGATTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
40130136 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* *
40130164 TCACTTAG----ATGTCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
40130188 TCATTTAGCACAATG
1 TCACTTAGCACAATG
40130203 TCGTATCCTA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
24 20 0.36
28 36 0.64
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:40132948 original size:93 final size:93
Alignment explanation
Indices: 40132836--40133006 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
40132826 GCCCATAAGT
* *
40132836 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
40132901 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
40132929 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
40132994 CGAGTTCGGATGC
66 CGAGTTCGGATGC
40133007 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:40133022 original size:46 final size:46
Alignment explanation
Indices: 40132828--40133008 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
40132818 TGTAACCCGC
* * *
40132828 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
40132874 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
40132924 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
40132967 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
40133009 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:40147938 original size:21 final size:21
Alignment explanation
Indices: 40147871--40147954 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 21
40147861 CTTTTATTTA
* *
40147871 TTATTTCTA-TTT-TTTACTT
1 TTATTTTTATTTTATTTAATT
* **
40147890 TTATCTTTATTTT-TTTAAAC
1 TTATTTTTATTTTATTTAATT
*
40147910 TTACTTTTTATTTTATTTTATT
1 TTA-TTTTTATTTTATTTAATT
* *
40147932 TTATTTTTCTTTAATTTAATT
1 TTATTTTTATTTTATTTAATT
40147953 TT
1 TT
40147955 TTTACATCCT
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
19 7 0.14
20 10 0.20
21 26 0.52
22 7 0.14
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (21 bp):
TTATTTTTATTTTATTTAATT
Found at i:40147944 original size:15 final size:15
Alignment explanation
Indices: 40147915--40147957 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
40147905 TAAACTTACT
40147915 TTTTATTTTATTTT-A
1 TTTTATTTT-TTTTAA
40147930 TTTTATTTTTCTTTAA
1 TTTTATTTTT-TTTAA
*
40147946 TTTAATTTTTTT
1 TTTTATTTTTTT
40147958 ACATCCTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 1 0.04
15 14 0.56
16 10 0.40
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATTTTTTTTAA
Found at i:40152655 original size:28 final size:27
Alignment explanation
Indices: 40152615--40152697 Score: 112
Period size: 27 Copynumber: 3.0 Consensus size: 27
40152605 GGAGGAAGCG
*
40152615 TTCTGGTCGCTCTGCCACAAATATCTGT
1 TTCTGGTAGCTCTGCCAC-AATATCTGT
*
40152643 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTAGCTCTGCCACAATATCTGT
* * *
40152670 ATCTGGTAACTCTGTCACAATATCTGT
1 TTCTGGTAGCTCTGCCACAATATCTGT
40152697 T
1 T
40152698 CTAGCAATCA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
27 32 0.65
28 17 0.35
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (27 bp):
TTCTGGTAGCTCTGCCACAATATCTGT
Found at i:40157062 original size:46 final size:46
Alignment explanation
Indices: 40156995--40157087 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
40156985 CCCGTGTGAA
40156995 CAGGCCGTGTGCCTCACATGGTCTAGACACGCCCGTGTGTCAAAGC
1 CAGGCCGTGTGCCTCACATGGTCTAGACACGCCCGTGTGTCAAAGC
40157041 CAGGCCGTGTGCCTCACATGGTCTAGACACGCCCGTGTGTCAAAGC
1 CAGGCCGTGTGCCTCACATGGTCTAGACACGCCCGTGTGTCAAAGC
40157087 C
1 C
40157088 GTGGCAGAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.19
Consensus pattern (46 bp):
CAGGCCGTGTGCCTCACATGGTCTAGACACGCCCGTGTGTCAAAGC
Found at i:40158588 original size:9 final size:8
Alignment explanation
Indices: 40158557--40158590 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
40158547 AGTCCCTAAT
40158557 TCACAAAA
1 TCACAAAA
40158565 TCACAAAA
1 TCACAAAA
40158573 TCACAAAA
1 TCACAAAA
40158581 TACACAAAA
1 T-CACAAAA
40158590 T
1 T
40158591 TTGCTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.62, C:0.24, G:0.00, T:0.15
Consensus pattern (8 bp):
TCACAAAA
Found at i:40162298 original size:22 final size:22
Alignment explanation
Indices: 40162270--40162315 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
40162260 GAATCAATCA
40162270 AATATGCAAAAATAAGCTTCAC
1 AATATGCAAAAATAAGCTTCAC
40162292 AATATGCAAAAATAAGCTTCAC
1 AATATGCAAAAATAAGCTTCAC
40162314 AA
1 AA
40162316 CCCTTTCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.52, C:0.17, G:0.09, T:0.22
Consensus pattern (22 bp):
AATATGCAAAAATAAGCTTCAC
Found at i:40170596 original size:30 final size:30
Alignment explanation
Indices: 40170544--40170606 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
40170534 CTCGATCGGA
* * *
40170544 TGTGACATACGGCCAGGTAACACAGCCATG
1 TGTGACACACGGCAAGGTAACACAACCATG
*
40170574 TGTGACACACGGTCAAGG-AACACAACCGTG
1 TGTGACACACGG-CAAGGTAACACAACCATG
40170604 TGT
1 TGT
40170607 CCCCTGATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 24 0.86
31 4 0.14
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.17
Consensus pattern (30 bp):
TGTGACACACGGCAAGGTAACACAACCATG
Found at i:40173507 original size:20 final size:21
Alignment explanation
Indices: 40173473--40173526 Score: 85
Period size: 20 Copynumber: 2.6 Consensus size: 21
40173463 TCATACAATG
40173473 TGTTAGTAC-GATTTCATATTC
1 TGTT-GTACTGATTTCATATTC
40173494 TGTTGTA-TGATTTCATATTC
1 TGTTGTACTGATTTCATATTC
40173514 TGTTGTACTGATT
1 TGTTGTACTGATT
40173527 GGCGAAGTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 22 0.71
21 9 0.29
ACGTcount: A:0.20, C:0.11, G:0.17, T:0.52
Consensus pattern (21 bp):
TGTTGTACTGATTTCATATTC
Found at i:40177515 original size:40 final size:40
Alignment explanation
Indices: 40177430--40177580 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
40177420 AATTGAATGA
* * *
40177430 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
40177470 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
40177511 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
40177550 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
40177581 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:40177594 original size:40 final size:40
Alignment explanation
Indices: 40177466--40177596 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
40177456 TATGCTGGAA
* * *
40177466 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
40177506 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
40177546 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
40177586 ATTATATCCGG
1 ATTATATCCGG
40177597 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:40185549 original size:80 final size:79
Alignment explanation
Indices: 40185417--40185565 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
40185407 ATTGAATGAT
*
40185417 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
40185482 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
40185496 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
40185559 TTTGTGC
63 ATTGTGC
40185566 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:40185579 original size:40 final size:40
Alignment explanation
Indices: 40185415--40185581 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
40185405 AAATTGAATG
* * *
40185415 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGAGATT
* * * **
40185454 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
* *
40185494 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGAGATT
* * *
40185534 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GAGATT
40185574 ATATCCGG
1 ATATCCGG
40185582 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 17 0.17
40 83 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
Found at i:40185580 original size:80 final size:79
Alignment explanation
Indices: 40185415--40185581 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
40185405 AAATTGAATG
*
40185415 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
40185480 TTGTGCTAGTGGCT
66 TTGTGCTAGTGACT
* * * * *
40185494 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
40185557 CATTTGTGC-ACGTGATT
63 CAATTGTGCTA-GTGACT
40185574 ATATCCGG
1 ATATCCGG
40185582 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGACT
Found at i:40191818 original size:40 final size:40
Alignment explanation
Indices: 40191733--40191883 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
40191723 AATTGAATGA
* * *
40191733 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
40191773 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
40191814 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
40191853 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
40191884 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:40191897 original size:40 final size:40
Alignment explanation
Indices: 40191769--40191899 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
40191759 TATGCTGGAA
* * *
40191769 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
40191809 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
40191849 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
40191889 ATTATATCCGG
1 ATTATATCCGG
40191900 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:40195406 original size:8 final size:8
Alignment explanation
Indices: 40195363--40195409 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
40195353 TTTATTCTCA
40195363 TTTTTTCT
1 TTTTTTCT
40195371 TTTCTTTCT
1 TTT-TTTCT
*
40195380 TTCTTTC-
1 TTTTTTCT
*
40195387 TTTTTCCTT
1 TTTTTTC-T
40195396 TTTTTTCT
1 TTTTTTCT
40195404 TTTTTT
1 TTTTTT
40195410 TAAATGGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
7 5 0.16
8 14 0.44
9 13 0.41
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTCT
Found at i:40203033 original size:31 final size:31
Alignment explanation
Indices: 40202959--40203034 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
40202949 TCCTATGCCA
40202959 ATTTGAAATGAAAGGAGATCAAACCCTTCGC
1 ATTTGAAATGAAAGGAGATCAAACCCTTCGC
* **
40202990 ATGTGATTTGAAAGGAGATCAAACCCTTCGC
1 ATTTGAAATGAAAGGAGATCAAACCCTTCGC
40203021 ATTTGAAATGAAAG
1 ATTTGAAATGAAAG
40203035 ATGTATTTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (31 bp):
ATTTGAAATGAAAGGAGATCAAACCCTTCGC
Found at i:40204668 original size:46 final size:46
Alignment explanation
Indices: 40204562--40204785 Score: 186
Period size: 47 Copynumber: 4.8 Consensus size: 46
40204552 GGTCACTTGT
* * * *
40204562 GTAAGCCAGTGTAAGACCATGTCTGGGACACAGCATCGGTATTGAGAT
1 GTAAGCCAGTGTAAGACCATGTCTGGGACA-TGCATCGG-CTCGAGAC
* *
40204610 G-AGTGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGAC
1 GTA-AGCCAGTGTAAGACCATGTCTGGGACATGCATCGG-CTCGAGAC
* * * *
40204656 GTAAGCCAGTGTAAGA-CATGTCTGGAACTTGCGTCGGCTACGAAAC
1 GTAAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGAC
* * * * *
40204702 G-ATAGTCAGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGAT
1 GTA-AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGAGAC
* * *
40204749 ATGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 GTAAGCCAGTGTAAGACCATGTCTGGGACAT-GCATC
40204786 AGAACCTTAC
Statistics
Matches: 143, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
45 3 0.02
46 60 0.42
47 61 0.43
48 19 0.13
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GTAAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGAC
Found at i:40209625 original size:16 final size:14
Alignment explanation
Indices: 40209597--40209623 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
40209587 TTTATACTTG
40209597 TTTGATAGTATATC
1 TTTGATAGTATATC
40209611 TTTGATAGTATAT
1 TTTGATAGTATAT
40209624 ATTTCATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.52
Consensus pattern (14 bp):
TTTGATAGTATATC
Found at i:40214069 original size:24 final size:24
Alignment explanation
Indices: 40214042--40214087 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
40214032 AACTTAATCA
40214042 GAGTTTAAGTGGGA-AAGTAAAACT
1 GAGTTTAAGTGGGAGAAG-AAAACT
*
40214066 GAGTTTAATTGGGAGAAGAAAA
1 GAGTTTAAGTGGGAGAAGAAAA
40214088 GCCAAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.43, C:0.02, G:0.30, T:0.24
Consensus pattern (24 bp):
GAGTTTAAGTGGGAGAAGAAAACT
Done.