Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 157 of 345
Found at i:43438048 original size:17 final size:18
Alignment explanation
Indices: 43438009--43438050 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
43437999 ATGAAAAATT
43438009 GAAAGAAAATAAAGAAAA
1 GAAAGAAAATAAAGAAAA
* * *
43438027 AAAAGAAAA-GAAGAAGA
1 GAAAGAAAATAAAGAAAA
43438044 GAAAGAA
1 GAAAGAA
43438051 CGCACAACAC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.02
Consensus pattern (18 bp):
GAAAGAAAATAAAGAAAA
Found at i:43438049 original size:9 final size:9
Alignment explanation
Indices: 43438009--43438050 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
43437999 ATGAAAAATT
43438009 GAAAGAAAA
1 GAAAGAAAA
*
43438018 TAAAGAAAA
1 GAAAGAAAA
*
43438027 AAAAGAAAA
1 GAAAGAAAA
*
43438036 G-AAGAAGA
1 GAAAGAAAA
43438044 GAAAGAA
1 GAAAGAA
43438051 CGCACAACAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 7 0.25
9 21 0.75
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.02
Consensus pattern (9 bp):
GAAAGAAAA
Found at i:43442122 original size:27 final size:27
Alignment explanation
Indices: 43442077--43442136 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
43442067 CAGTTGATAG
* ** *
43442077 AGGTGGGACAGATGTAGTGCCATCTGA
1 AGGTGGGACAAATACAGTGCCATCCGA
*
43442104 AGGTGGGACAAATACAGTGCCATCCGT
1 AGGTGGGACAAATACAGTGCCATCCGA
43442131 AGGTGG
1 AGGTGG
43442137 TGCGAAAGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.17, G:0.37, T:0.20
Consensus pattern (27 bp):
AGGTGGGACAAATACAGTGCCATCCGA
Found at i:43447019 original size:27 final size:27
Alignment explanation
Indices: 43446989--43447117 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 27
43446979 ATTACCAAAG
* * *
43446989 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCATTT
*
43447016 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTATCATTT
*
43447043 TACCCTCGATTTATAGAATTA-CTATTT
1 TACCCTCGATTTACAGAATTATC-ATTT
* **
43447070 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTATCATTT
* *
43447097 TACCCTCAATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
43447118 CTAAAATACC
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 87 0.99
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTATCATTT
Found at i:43447036 original size:54 final size:54
Alignment explanation
Indices: 43446962--43447090 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
43446952 ATTATTGAAA
* * * * *
43446962 TACCCTCGACTTATAAAATTACCAAAGTACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACT-ATTT
*** * *
43447016 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACTATTT
*
43447070 TACCCTTGATTTACAGAATTA
1 TACCCTCGATTTACAGAATTA
43447091 TTGTTTTACC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 62 0.98
55 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACTATTT
Found at i:43447098 original size:54 final size:54
Alignment explanation
Indices: 43447013--43447147 Score: 162
Period size: 54 Copynumber: 2.5 Consensus size: 54
43447003 ATAATTATCG
* * * *
43447013 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTA
1 TTTTACCCTTGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACTA
***
43447067 TTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCAATTTACAAAATTACTA
1 TTTTACCCTTGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACTA
*** * *
43447121 AAATACCCTTGGTTTACAAAATTACCA
1 TTTTACCCTTGATTTACAGAATTACCA
43447148 AAATACCCTG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.40
Consensus pattern (54 bp):
TTTTACCCTTGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACTA
Found at i:43447155 original size:54 final size:54
Alignment explanation
Indices: 43447104--43447345 Score: 195
Period size: 54 Copynumber: 4.5 Consensus size: 54
43447094 TTTTACCCTC
**
43447104 AATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACC-CT
1 AATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCACT
** ** * *
43447157 GGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCAATATACCACT
1 AATTTACAAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCAAAATACCACT
** *** * * **
43447211 GGTTTGTGAAATTCCTGAAATACCCTTAATTTGTAAAATTACCAAAATACCACT
1 AATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCACT
* * * *
43447265 AATTTACAAAATTAC-ATAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATT
1 AATTTACAAAATTACTA-AAATACCCTTG-GTTTGT-AAAATTACCA-AAATACCACT
** *
43447321 GGTTTACAAAATTACTGAAATACCC
1 AATTTACAAAATTACTAAAATACCC
43447346 CTAATAGGTA
Statistics
Matches: 151, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
53 42 0.28
54 67 0.44
55 5 0.03
56 37 0.25
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
AATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCACT
Found at i:43447156 original size:81 final size:81
Alignment explanation
Indices: 43446959--43447156 Score: 207
Period size: 81 Copynumber: 2.4 Consensus size: 81
43446949 CCAATTATTG
* * * * * *
43446959 AAATACCCTCGACTTATAAAATTACCAAAGTACCCCCGATTTACATAATTATCGTTTTACCCTCG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTATCGTTTTACCCTCA
*
43447024 ATTTACAGAATTACCA
66 ATTTACAAAATTACCA
*** * * * *** * *
43447040 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCA
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTATCGTTTTACCCTCA
*
43447105 ATTTACAAAATTACTA
66 ATTTACAAAATTACCA
* *
43447121 AAATACCCTTGGTTTACAAAATTACCAAAATACCCT
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCT
43447157 GGTTTGTAAA
Statistics
Matches: 90, Mismatches: 27, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.36
Consensus pattern (81 bp):
AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTATCGTTTTACCCTCA
ATTTACAAAATTACCA
Found at i:43447288 original size:81 final size:80
Alignment explanation
Indices: 43447104--43447292 Score: 206
Period size: 81 Copynumber: 2.4 Consensus size: 80
43447094 TTTTACCCTC
**
43447104 AATTTACAAAATTAC-TAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTGGTTTGTAAAA
1 AATTTACAAAATTACAT-AAATACCCTTGGTTTACAAAATTACCAAAATACCCTAATTTGTAAAA
43447168 TTACCAAAATACCACT
65 TTACCAAAATACCACT
** ** * *** *
43447184 GGTTTGTAAAATTACCA-ATATACCAC-TGGTTTGTGAAATT-CCTGAAATACCCTTAATTTGTA
1 AATTTACAAAATTA-CATAAATACC-CTTGGTTTACAAAATTACC-AAAATACCC-TAATTTGTA
43447246 AAATTACCAAAATACCACT
62 AAATTACCAAAATACCACT
43447265 AATTTACAAAATTACATAAATACCCTTG
1 AATTTACAAAATTACATAAATACCCTTG
43447293 ACTTTCTAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
79 2 0.02
80 38 0.44
81 46 0.53
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (80 bp):
AATTTACAAAATTACATAAATACCCTTGGTTTACAAAATTACCAAAATACCCTAATTTGTAAAAT
TACCAAAATACCACT
Found at i:43447340 original size:27 final size:27
Alignment explanation
Indices: 43447106--43447344 Score: 150
Period size: 27 Copynumber: 8.8 Consensus size: 27
43447096 TTACCCTCAA
43447106 TTTACAAAATTACTAAAATACC-CTTGG
1 TTTACAAAATTACTAAAATACCAC-TGG
*
43447133 TTTACAAAATTACCAAAATACC-CTGG
1 TTTACAAAATTACTAAAATACCACTGG
** *
43447159 TTTGTAAAATTACCAAAATACCACTGG
1 TTTACAAAATTACTAAAATACCACTGG
** * *
43447186 TTTGTAAAATTACCAATATACCACTGG
1 TTTACAAAATTACTAAAATACCACTGG
*** * * **
43447213 TTTGTGAAATTCCTGAAATACC-CTTAA
1 TTTACAAAATTACTAAAATACCAC-TGG
** * **
43447240 TTTGTAAAATTACCAAAATACCACTAA
1 TTTACAAAATTACTAAAATACCACTGG
*
43447267 TTTACAAAATTAC-ATAAATACC-CTTGAC
1 TTTACAAAATTACTA-AAATACCAC-TG-G
*
43447295 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACTA-AAATACCACTGG
*
43447323 TTTACAAAATTACTGAAATACC
1 TTTACAAAATTACTAAAATACC
43447345 CCTAATAGGT
Statistics
Matches: 177, Mismatches: 23, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
26 26 0.15
27 125 0.71
28 8 0.05
29 18 0.10
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCACTGG
Found at i:43448725 original size:20 final size:20
Alignment explanation
Indices: 43448659--43448725 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
43448649 ATTTTGATAA
*
43448659 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
43448679 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
43448699 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
43448719 ACGTGAT
1 ACATGAT
43448726 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:43448806 original size:23 final size:23
Alignment explanation
Indices: 43448776--43448917 Score: 257
Period size: 23 Copynumber: 6.1 Consensus size: 23
43448766 AGGAAGTGAA
43448776 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
43448799 AAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
43448822 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
43448845 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
43448868 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
43448891 AAGAGGGCTTTTGCCCCAGTTATT
1 AA-AGGGCTTATGCCCCAGTTATT
43448915 AAA
1 AAA
43448918 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
23 93 0.81
24 22 0.19
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:43449186 original size:31 final size:31
Alignment explanation
Indices: 43449132--43449195 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
43449122 CGTTTACAGT
*
43449132 AAAGGCTTCGGCCCGATAATATGAAATATGA
1 AAAGGCTTCGGCCCGATAATATGAAAAATGA
**
43449163 AAAGGCTTCGGCCC-AGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCGA-TAATATGAAAAATGA
43449194 AA
1 AA
43449196 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCGATAATATGAAAAATGA
Found at i:43453678 original size:31 final size:31
Alignment explanation
Indices: 43453640--43453700 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
43453630 GTAGAACTCT
*
43453640 TAAATAAAAAGATTGACGGTTTATGTGGTTC
1 TAAATAAAAAGATTGACAGTTTATGTGGTTC
*
43453671 TAAATAAAAAGATTGACAGTTTGTGTGGTT
1 TAAATAAAAAGATTGACAGTTTATGTGGTT
43453701 TTACTCAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (31 bp):
TAAATAAAAAGATTGACAGTTTATGTGGTTC
Found at i:43458860 original size:28 final size:28
Alignment explanation
Indices: 43458791--43458891 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
43458781 GACAAGATTG
* * * *
43458791 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
43458821 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
43458849 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
43458878 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
43458892 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:43466811 original size:28 final size:28
Alignment explanation
Indices: 43466742--43466842 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
43466732 GACAAGATTG
* * * *
43466742 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
43466772 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
43466800 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
43466829 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
43466843 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:43468449 original size:40 final size:40
Alignment explanation
Indices: 43468352--43468494 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
43468342 GAATCACGTA
* * *
43468352 CCTTCGGGAT-TTAA-CCGGATATAGCGACTCGCTCGATTG
1 CCTTCGGG-TCTTAACCCGGATATAGTGATTCGCACGATTG
* * * * *
43468391 TCTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTG
1 CCTTCGGGTCTTAACCCGGATATAGTGATTCGCACGATTG
* * * * *
43468431 CCTTCGGGTCTTAACCCGGATTTGGTAACTT-GCACAAATG
1 CCTTCGGGTCTTAACCCGGATATAGTGA-TTCGCACGATTG
*
43468471 CCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGTCTTAACCCGGATATA
43468495 ATTACTAGCA
Statistics
Matches: 80, Mismatches: 21, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
39 9 0.11
40 69 0.86
41 2 0.03
ACGTcount: A:0.20, C:0.26, G:0.25, T:0.29
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAGTGATTCGCACGATTG
Found at i:43468513 original size:40 final size:40
Alignment explanation
Indices: 43468422--43468533 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 40
43468412 ATAGTGATTC
* * * ** *
43468422 GCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
* *
43468462 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATTACTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
* ***
43468502 GCATAATTGCCTTCGAAACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
43468534 CATTCCAATG
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
Found at i:43476407 original size:40 final size:40
Alignment explanation
Indices: 43476362--43476529 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
43476352 CGGAATATAA
43476362 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
43476402 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
43476442 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
43476482 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
43476522 CCGGATAT
1 CCGGATAT
43476530 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:43482350 original size:39 final size:39
Alignment explanation
Indices: 43482291--43482473 Score: 224
Period size: 39 Copynumber: 4.7 Consensus size: 39
43482281 GCACGTGGCT
* * **
43482291 TGCGGACTTCAAGTCCGGATATATTTTAAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* *
43482330 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* * * *
43482369 TGTGGACTTCATGTTCGGATATATTTCCAGTATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* *
43482408 TGCGGACCTCATGTCC-AACTATATTTCCAGCATATTGCC
1 TGCGGACCTCATGTCCGGA-TATATTTCCAGCATATAGCC
**
43482447 TGTAGACCTCATGTCCGGATATATTTC
1 TGCGGACCTCATGTCCGGATATATTTC
43482474 AAATACCATG
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
38 1 0.01
39 119 0.98
40 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (39 bp):
TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
Found at i:43482407 original size:78 final size:78
Alignment explanation
Indices: 43482294--43482475 Score: 249
Period size: 78 Copynumber: 2.3 Consensus size: 78
43482284 CGTGGCTTGC
* * **
43482294 GGACTTCAAGTCCGGATATATTTTAAGCATATAGCCTGCGGACCTCATGTCTGGA-TATATTCCC
1 GGACTTCATGTCCGGATATATTTCAAGCATATAGCCTGCGGACCTCATGTC-CAACTATATTCCC
43482358 AGCATATAGCCTGT
65 AGCATATAGCCTGT
* * * *
43482372 GGACTTCATGTTCGGATATATTTCCAGTATATAGCCTGCGGACCTCATGTCCAACTATATTTCCA
1 GGACTTCATGTCCGGATATATTTCAAGCATATAGCCTGCGGACCTCATGTCCAACTATATTCCCA
*
43482437 GCATATTGCCTGT
66 GCATATAGCCTGT
* *
43482450 AGACCTCATGTCCGGATATATTTCAA
1 GGACTTCATGTCCGGATATATTTCAA
43482476 ATACCATGCA
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
77 1 0.01
78 89 0.99
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
GGACTTCATGTCCGGATATATTTCAAGCATATAGCCTGCGGACCTCATGTCCAACTATATTCCCA
GCATATAGCCTGT
Found at i:43491694 original size:39 final size:39
Alignment explanation
Indices: 43491663--43491833 Score: 270
Period size: 39 Copynumber: 4.4 Consensus size: 39
43491653 CGGCCTTCTA
43491663 GTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCAT
1 GTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCAT
* * *
43491702 GTCTGGATATATTCCCAGCATATAGCCTGCGGACTTCAT
1 GTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCAT
*
43491741 GTTCGGATATATTTCCAGCATATAGCCTGCGGACCTCAT
1 GTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCAT
* * *
43491780 GTCCGAATATATTTCCAGCATATATCCTGCGAACCTCAT
1 GTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCAT
*
43491819 GGCCGGATATATTTC
1 GTCCGGATATATTTC
43491834 AAATACCATG
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (39 bp):
GTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCAT
Found at i:43507303 original size:30 final size:30
Alignment explanation
Indices: 43507267--43507367 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
43507257 GACAAGATTG
* * *
43507267 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
43507297 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
43507325 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
43507354 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
43507368 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:43507379 original size:29 final size:28
Alignment explanation
Indices: 43507296--43507371 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
43507286 AAAATTGTAC
* *
43507296 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
43507324 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
43507353 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
43507372 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:43514485 original size:28 final size:28
Alignment explanation
Indices: 43514416--43514514 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
43514406 GACAAGATTG
* * * *
43514416 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
*
43514446 GCACTAAGTGTGCGAGTTTGATTCTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* **
43514474 GCACTAAGTGTGCGAG-CTGAAAATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
43514501 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
43514515 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 21 0.34
28 22 0.36
30 18 0.30
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:43514508 original size:27 final size:28
Alignment explanation
Indices: 43514445--43514514 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
43514435 AAAATTGTAC
* ***
43514445 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAAAATAT
43514473 AGCACTAAGTGTGCGAG-CTGAAAATAT
1 AGCACTAAGTGTGCGAGTCTGAAAATAT
43514500 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
43514515 GATTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAAAATAT
Found at i:43518621 original size:44 final size:44
Alignment explanation
Indices: 43518556--43518802 Score: 227
Period size: 44 Copynumber: 5.7 Consensus size: 44
43518546 TATGTGTTAC
* *
43518556 CGTGTAAGACCATGTTTGGGACGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTA
** * * * * *
43518600 TATGTAAGACCACATCTGGGACGCTGGAATTGACTCATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTA
* * *
43518644 CGTGTAAGACCACATCTAGGACGTTGTCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTA
* * * *
43518688 CGTGTAAGACCACTTCTGGGACATTTGCTTCGTA-TT-TGATTT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATTTA
* * * * *
43518730 CGTGTAAGACCATGCCTGGGACAG-TAGCATTGA-TATTTGA-TTA
1 CGTGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTA
*
43518773 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
43518803 TGTACAAGAT
Statistics
Matches: 163, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.01
42 28 0.17
43 33 0.20
44 99 0.61
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTA
Found at i:43518749 original size:42 final size:43
Alignment explanation
Indices: 43518681--43518794 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
43518671 CATCGACTTA
* *
43518681 TGATTTACGTGTAAGACCACT-TCTGGGACATTTGC-TTCG-TATT
1 TGATTT-CGTGTAAGACCA-TGTCTGGGACAGTAGCATT-GATATT
*
43518724 TGATTTCGTGTAAGACCATGCCTGGGACAGTAGCATTGATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACAGTAGCATTGATATT
* * *
43518767 TGATTACATGTAAGACCACGTCTGGGAC
1 TGATTTCGTGTAAGACCATGTCTGGGAC
43518795 GTTGGCATTG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
41 1 0.02
42 24 0.39
43 36 0.59
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATGTCTGGGACAGTAGCATTGATATT
Found at i:43520178 original size:11 final size:11
Alignment explanation
Indices: 43520164--43520193 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
43520154 GTGAATGATG
43520164 TTTGTGAATTA
1 TTTGTGAATTA
43520175 TTTGTGAATTA
1 TTTGTGAATTA
43520186 TTTGTGAA
1 TTTGTGAA
43520194 ATGTTTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (11 bp):
TTTGTGAATTA
Found at i:43524267 original size:18 final size:18
Alignment explanation
Indices: 43524244--43524278 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
43524234 TGGCGGCCAC
43524244 ATAAACCACAAAC-ACACG
1 ATAAACCA-AAACTACACG
43524262 ATAAACCAAAACTACAC
1 ATAAACCAAAACTACAC
43524279 CAGAACAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.57, C:0.31, G:0.03, T:0.09
Consensus pattern (18 bp):
ATAAACCAAAACTACACG
Found at i:43524921 original size:55 final size:55
Alignment explanation
Indices: 43524790--43524921 Score: 129
Period size: 55 Copynumber: 2.4 Consensus size: 55
43524780 CATGGTTGTA
* * * * **
43524790 GGCGAACCTGCTAAAACAACACGGGCGTGCGACATGCCAGTGCCTTGAAACCATG
1 GGCGAACCTGCCAAAACAACACGAGCGTGCAACACGCCAGTGCCAAGAAACCATG
* ** ** * * * *
43524845 GCCGAACCTATCAAATTAACACGAGTGTGCAACACGCCCGTGCCAAGCAACCGTG
1 GGCGAACCTGCCAAAACAACACGAGCGTGCAACACGCCAGTGCCAAGAAACCATG
43524900 GGCGAACCTGCCAAAACAACAC
1 GGCGAACCTGCCAAAACAACAC
43524922 AGGCGTGGCC
Statistics
Matches: 57, Mismatches: 20, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (55 bp):
GGCGAACCTGCCAAAACAACACGAGCGTGCAACACGCCAGTGCCAAGAAACCATG
Found at i:43536005 original size:44 final size:42
Alignment explanation
Indices: 43535957--43536113 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
43535947 TGTGTTATCG
*
43535957 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TT-TGATTTACA
* * * *
43536001 TGTAAGACCACTTCTGGGACATTGACATTGTATTTGATTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGATTTACA
* *
43536043 TGTAAGACC-CTGCCTGGGACAG-TGGTATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCG--ATTTGATTTACA
*
43536086 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
43536114 TGTACGAGAT
Statistics
Matches: 92, Mismatches: 14, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 36 0.39
44 29 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATTTACA
Found at i:43539935 original size:45 final size:45
Alignment explanation
Indices: 43539885--43539972 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
43539875 AAACATGTGT
*
43539885 CACATACATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
* *
43539930 CACATATATCATGAACTCAGATCACAACTCAATGAGTTCAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
43539973 CACATAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:43539970 original size:21 final size:21
Alignment explanation
Indices: 43539901--43539976 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
43539891 CATCATGAAC
* *
43539901 TCAGACCATAACTCAATGAGT
1 TCAGATCACAACTCAATGAGT
* **
43539922 TCAGATGCCACATATATC-ATGAAC
1 TCAGAT--CACA-A-CTCAATGAGT
43539946 TCAGATCACAACTCAATGAGT
1 TCAGATCACAACTCAATGAGT
43539967 TCAGATCACA
1 TCAGATCACA
43539977 TAGTTCCTAG
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
20 2 0.05
21 20 0.48
22 4 0.10
23 3 0.07
24 11 0.26
25 2 0.05
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (21 bp):
TCAGATCACAACTCAATGAGT
Found at i:43549002 original size:29 final size:29
Alignment explanation
Indices: 43548960--43549019 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
43548950 CAATGAATCG
*
43548960 CTCACTGATGTATTTCTTTTGGAACTCCT
1 CTCACTGATGTATTTCTTTGGGAACTCCT
43548989 CTCACTGATGTATTTCTTTGGGAACTCCT
1 CTCACTGATGTATTTCTTTGGGAACTCCT
43549018 CT
1 CT
43549020 TGAAAGAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.25, G:0.15, T:0.43
Consensus pattern (29 bp):
CTCACTGATGTATTTCTTTGGGAACTCCT
Found at i:43553950 original size:40 final size:40
Alignment explanation
Indices: 43553901--43554068 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
43553891 TCTTCGGAAT
* * *
43553901 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** * *
43553940 TTAACCCGGATTTGGTAACTTGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
43553980 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
43554020 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCTGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
43554060 TTAGCCCGG
1 TTAGCCCGG
43554069 GTATCATTCA
Statistics
Matches: 104, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:43554049 original size:80 final size:80
Alignment explanation
Indices: 43553892--43554068 Score: 196
Period size: 80 Copynumber: 2.2 Consensus size: 80
43553882 AACCGAGCTT
* * * * **
43553892 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
43553956 AACTTGTACAAATGC
66 AACTAGCACAAATGC
* ** *
43553971 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
* *
43554035 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
*
43554051 CTTCTGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
43554069 GTATCATTCA
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 10 0.12
80 68 0.85
81 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:43557392 original size:15 final size:17
Alignment explanation
Indices: 43557362--43557393 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
43557352 TTGATACTTG
43557362 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
43557379 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
43557394 AGTTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:43557983 original size:20 final size:21
Alignment explanation
Indices: 43557958--43557997 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
43557948 TGTTCATAGC
*
43557958 AAAAATTTTCTAAGT-TTTGT
1 AAAAATTTCCTAAGTGTTTGT
43557978 AAAAATTTCCTAAGTGTTTG
1 AAAAATTTCCTAAGTGTTTG
43557998 GTTTAGTCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.45
Consensus pattern (21 bp):
AAAAATTTCCTAAGTGTTTGT
Found at i:43559508 original size:40 final size:40
Alignment explanation
Indices: 43559463--43559630 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
43559453 CGGAATATAA
43559463 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
43559503 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
43559543 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
43559583 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
43559623 CCGGATAT
1 CCGGATAT
43559631 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:43559613 original size:80 final size:80
Alignment explanation
Indices: 43559479--43559628 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
43559469 ATAATCACGT
*
43559479 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
43559543 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
43559559 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
43559622 CCCGGAT
64 CCCGGAT
43559629 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:43567485 original size:40 final size:40
Alignment explanation
Indices: 43567440--43567607 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
43567430 CGGAATATAA
43567440 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
43567480 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
43567520 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
43567560 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTC-TTAGC
43567600 CCGGATAT
1 CCGGATAT
43567608 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 2 0.02
40 101 0.98
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:43567590 original size:80 final size:80
Alignment explanation
Indices: 43567456--43567605 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
43567446 ATAATCACGT
*
43567456 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCT-TTAGC
43567520 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
43567536 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTTAG
43567599 CCCGGAT
64 CCCGGAT
43567606 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTTAGCC
CGGATGTAGCCACTA
Found at i:43575474 original size:80 final size:80
Alignment explanation
Indices: 43575390--43575538 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
43575380 TATGGTAACC
* * * *
43575390 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
43575454 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
43575470 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
43575535 CCGG
66 CCGG
43575539 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:43575480 original size:40 final size:38
Alignment explanation
Indices: 43575431--43575538 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
43575421 ATCACGATTT
*
43575431 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
43575471 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
43575511 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
43575539 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:43583570 original size:80 final size:80
Alignment explanation
Indices: 43583486--43583634 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
43583476 TATGGTAACC
* * * *
43583486 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
43583550 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
43583566 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
43583631 CCGG
66 CCGG
43583635 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:43583576 original size:40 final size:38
Alignment explanation
Indices: 43583527--43583634 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
43583517 ATCACGATTT
*
43583527 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
43583567 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
43583607 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
43583635 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:43593841 original size:52 final size:51
Alignment explanation
Indices: 43593784--43593915 Score: 178
Period size: 50 Copynumber: 2.6 Consensus size: 51
43593774 ATGAACAAAT
* * *
43593784 GAGTTACTTAATGCTTGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAAC-TTAACTAACATGA
*
43593836 GAGTTACATAATGCATG-TTATAATTT-ATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACT-TAATTTAATGATGCAAACTTAACTAACATGA
* *
43593886 GAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
43593916 CAGAACACAT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
50 33 0.47
51 16 0.23
52 21 0.30
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:43602671 original size:31 final size:31
Alignment explanation
Indices: 43602633--43602695 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
43602623 CTTTTCACAC
*
43602633 TTCATATTTCGTAACACTAGGCCGAAGCCTT
1 TTCATATTTCATAACACTAGGCCGAAGCCTT
** *
43602664 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTAGGCCGAAGCCTT
43602695 T
1 T
43602696 ACTGTAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTAGGCCGAAGCCTT
Found at i:43602969 original size:25 final size:25
Alignment explanation
Indices: 43602880--43603008 Score: 131
Period size: 25 Copynumber: 5.2 Consensus size: 25
43602870 AGCATAGCTG
*
43602880 CTTTATCATTTAACTGGAGGCCT-AGCC
1 CTTTATCA--TAACTGG-GGCATAAGCC
* * *
43602907 TCTTT-TAATAATTGGGGCA-ATGCC
1 -CTTTATCATAACTGGGGCATAAGCC
* *
43602931 CTTT-TAATAACTGGGGTATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
43602955 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
*
43602980 CTTTATCATAACTAGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
43603005 CTTT
1 CTTT
43603009 TACACTTCCT
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
23 16 0.18
24 14 0.16
25 52 0.59
27 2 0.02
28 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (25 bp):
CTTTATCATAACTGGGGCATAAGCC
Found at i:43603084 original size:20 final size:20
Alignment explanation
Indices: 43603059--43603125 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
43603049 TTATGAATAC
43603059 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
43603079 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
43603099 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
43603119 ACCATGT
1 ATCATGT
43603126 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:43603090 original size:11 final size:11
Alignment explanation
Indices: 43603059--43603114 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
43603049 TTATGAATAC
43603059 ATCATGTGCAT
1 ATCATGTGCAT
*
43603070 ATCA--TACAT
1 ATCATGTGCAT
43603079 ATCATGTGCAT
1 ATCATGTGCAT
*
43603090 ATCA--TACAT
1 ATCATGTGCAT
*
43603099 GTCATGTGCAT
1 ATCATGTGCAT
43603110 ATCAT
1 ATCAT
43603115 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:43603183 original size:26 final size:25
Alignment explanation
Indices: 43603154--43603208 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
43603144 TTAAATTTAT
*
43603154 ATTTAAACCCTAGGGGTATAAT-GGTC
1 ATTTAAA-CCTAGGGGCA-AATCGGTC
**
43603180 ATTTTTACCTAGGGGCAAATCGGTC
1 ATTTAAACCTAGGGGCAAATCGGTC
43603205 ATTT
1 ATTT
43603209 TCATATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 3 0.12
25 17 0.68
26 5 0.20
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (25 bp):
ATTTAAACCTAGGGGCAAATCGGTC
Found at i:43603194 original size:25 final size:25
Alignment explanation
Indices: 43603162--43603209 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
43603152 ATATTTAAAC
*
43603162 CCTAGGGGTATAAT-GGTCATTTTTA
1 CCTAGGGGCA-AATCGGTCATTTTTA
43603187 CCTAGGGGCAAATCGGTCATTTT
1 CCTAGGGGCAAATCGGTCATTTT
43603210 CATATTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAATCGGTCATTTTTA
Found at i:43604905 original size:45 final size:44
Alignment explanation
Indices: 43604748--43604921 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 44
43604738 ATTTGGGCAT
43604748 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
43604793 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
43604841 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
43604886 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
43604922 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 32 0.29
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:43607849 original size:15 final size:15
Alignment explanation
Indices: 43607829--43607883 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
43607819 GTATCTTGGG
43607829 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
43607844 TTTCTTTATTCT-GA
1 TTTCTTTATTCTGGA
*
43607858 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
43607873 TTTCTTTATTC
1 TTTCTTTATTC
43607884 GGTTTCCTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 2 0.06
14 10 0.29
15 21 0.60
16 2 0.06
ACGTcount: A:0.13, C:0.16, G:0.09, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:43614720 original size:48 final size:48
Alignment explanation
Indices: 43614665--43614899 Score: 215
Period size: 48 Copynumber: 4.9 Consensus size: 48
43614655 GTGAATTATT
* * *
43614665 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGA-GGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATC-ATTGCC
* * * * *
43614713 GATGCCATGTCCCAAACATGGTCTTACATTAGCTCTCGTCTCATTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCATTGCC
* * * * *
43614761 GATGCCATG-TCTCAGACATGGTCTTACACTAGCGCACGTATCAATGTC
1 GATGCCATGTTC-CAAACATGGTCTTACACTAGCTCACATATCATTGCC
* * * * * *
43614809 GATGCCATG-TCCTAGACATGGTCTTACACTTGCTCTCACAACATTGCT
1 GATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACATATCATTGCC
* * * *
43614857 AATGCCATGTTCCAAACTTGGTCTTACACTGGCACACATATCA
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCA
43614900 CCCAAATGCC
Statistics
Matches: 151, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
47 3 0.02
48 145 0.96
49 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCATTGCC
Found at i:43614829 original size:96 final size:96
Alignment explanation
Indices: 43614665--43614899 Score: 269
Period size: 96 Copynumber: 2.4 Consensus size: 96
43614655 GTGAATTATT
* * * *
43614665 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCAAAC
43614730 ATGGTCTTACA-TTAGCTCTCGTCTCATTGCC
66 ATGGTCTTACACTT-GCTCTCGTCTCATTGCC
* * * * * *
43614761 GATGCCATG-TCTCAGACATGGTCTTACACTAGCGCACGTATCAATGTCGATGCCATGTCCTAGA
1 GATGCCATGTTC-CAAACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCAAA
* * *
43614825 CATGGTCTTACACTTGCTCTC-ACAACATTGCT
65 CATGGTCTTACACTTGCTCTCGTC-TCATTGCC
* * * *
43614857 AATGCCATGTTCCAAACTTGGTCTTACACTGGCACACATATCA
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCA
43614900 CCCAAATGCC
Statistics
Matches: 116, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
95 3 0.03
96 109 0.94
97 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (96 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCAAAC
ATGGTCTTACACTTGCTCTCGTCTCATTGCC
Found at i:43619289 original size:27 final size:27
Alignment explanation
Indices: 43619247--43619386 Score: 194
Period size: 27 Copynumber: 5.2 Consensus size: 27
43619237 TCATCTCTTC
* * *
43619247 TTCTGCTGGCTATGCCACATATATTTG
1 TTCTGGTGGCTCTGCCACATATATCTG
*
43619274 ATCTGGTGGCTCTGCCACATATATCTG
1 TTCTGGTGGCTCTGCCACATATATCTG
43619301 TTCTGGTGGCTCTGCCACATATATCTG
1 TTCTGGTGGCTCTGCCACATATATCTG
43619328 TTCTGGTGGCTCTGCCACA-ATTATCTG
1 TTCTGGTGGCTCTGCCACATA-TATCTG
* * *
43619355 TTCTGGTGACCCTGTCACAT-TATCTG
1 TTCTGGTGGCTCTGCCACATATATCTG
43619381 TTCTGG
1 TTCTGG
43619387 CAGCCATGCT
Statistics
Matches: 103, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.13
27 90 0.87
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACATATATCTG
Found at i:43627218 original size:27 final size:27
Alignment explanation
Indices: 43627178--43627315 Score: 199
Period size: 27 Copynumber: 5.1 Consensus size: 27
43627168 AGGAAGCGTC
* *
43627178 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
43627205 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
*
43627232 CTGGTGGCTCAGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
43627259 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* * *
43627286 CTGGTGACCCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
43627312 CTGG
1 CTGG
43627316 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
26 16 0.16
27 84 0.82
28 2 0.02
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:43629083 original size:30 final size:30
Alignment explanation
Indices: 43629047--43629147 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
43629037 GACAAGATTG
* * *
43629047 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
43629077 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
43629105 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
43629134 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
43629148 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:43629159 original size:29 final size:28
Alignment explanation
Indices: 43629076--43629151 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
43629066 AAAATTGTAC
* *
43629076 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
43629104 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
43629133 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
43629152 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:43636966 original size:30 final size:30
Alignment explanation
Indices: 43636930--43637030 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
43636920 GACAAGATTG
* * *
43636930 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
43636960 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
43636988 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
43637017 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
43637031 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:43637042 original size:29 final size:28
Alignment explanation
Indices: 43636959--43637034 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
43636949 AAAATTGTAC
* *
43636959 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
43636987 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
43637016 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
43637035 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:43643444 original size:46 final size:46
Alignment explanation
Indices: 43643391--43643566 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
43643381 TATTTGGGCA
*
43643391 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
43643437 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
43643484 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
43643530 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
43643567 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 65 0.59
47 29 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:43643546 original size:93 final size:93
Alignment explanation
Indices: 43643387--43643558 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
43643377 GGGATATTTG
* *
43643387 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
43643452 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
43643480 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
43643545 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
43643559 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:43648147 original size:29 final size:29
Alignment explanation
Indices: 43648108--43648186 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
43648098 CTTAATAATC
*
43648108 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
43648138 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
43648167 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
43648187 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:43649656 original size:15 final size:15
Alignment explanation
Indices: 43649636--43649704 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
43649626 GTATCTTGGG
43649636 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* **
43649651 TCTCTTTATTTTGGA
1 TTTCTTTATCCTGGA
* *
43649666 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
43649681 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
43649696 TTTCTTTAT
1 TTTCTTTAT
43649705 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.12, C:0.16, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:43649705 original size:30 final size:30
Alignment explanation
Indices: 43649627--43649714 Score: 106
Period size: 30 Copynumber: 3.0 Consensus size: 30
43649617 GTCACAATCG
* * * *
43649627 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
43649657 TATTTTGGATTTCTTTATTCTGGGTTTCTC
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
43649687 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
43649715 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
29 7 0.14
30 43 0.86
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:43649715 original size:14 final size:14
Alignment explanation
Indices: 43649636--43649715 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
43649626 GTATCTTGGG
*
43649636 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
43649651 TCTCTTTATTTTGGA
1 TTTCTTTA-TTCGGA
*
43649666 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
* *
43649681 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
43649696 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
43649710 TTTCTT
1 TTTCTT
43649716 GTTATCTTTG
Statistics
Matches: 50, Mismatches: 12, Indels: 7
0.72 0.17 0.10
Matches are distributed among these distances:
14 11 0.22
15 37 0.74
16 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.60
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:43652216 original size:47 final size:47
Alignment explanation
Indices: 43652099--43652272 Score: 191
Period size: 45 Copynumber: 3.8 Consensus size: 47
43652089 GGGATATTTG
*
43652099 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAA
* * * *
43652147 TG--TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--A
*
43652192 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-ATGGATGCGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAA
* *
43652239 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
43652273 TATGGGCGGG
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
45 34 0.32
46 28 0.26
47 32 0.30
48 2 0.02
49 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAA
Found at i:43654582 original size:48 final size:47
Alignment explanation
Indices: 43654527--43654808 Score: 257
Period size: 48 Copynumber: 5.9 Consensus size: 47
43654517 AGGGTGAATT
*
43654527 GCTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAG
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTC-AG
* * * * * * *
43654575 GCTGATGCCATGTCCCAAACATAGTCTTACATTAACTCTCGTCTCATT
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTCA-G
* * *
43654623 G-TCGATGCCATGTCCCAGACATGGTCTTACACTAG-TACACATATCAAT
1 GCT-GATGCCATGTCCCAAACATGGTCTTACACTAGCT-CACATGTC-AG
** * **
43654671 GCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATGATGTG
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATG-TCAG
* * * *
43654719 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCACA--ACATC
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAG--CTCACATGTCA-G
* *
43654767 GCTGATGCCATGTTCCAAACATGGTCTTACACTAGCACACAT
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT
43654809 ATCACCCAAA
Statistics
Matches: 189, Mismatches: 34, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
46 5 0.03
47 3 0.02
48 173 0.92
49 3 0.02
50 5 0.03
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGTCAG
Found at i:43654698 original size:96 final size:94
Alignment explanation
Indices: 43654530--43654800 Score: 307
Period size: 96 Copynumber: 2.8 Consensus size: 94
43654520 GTGAATTGCT
* * * *
43654530 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCTGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-TCACATATC-ATGCTGATGCCATGTCCCAAAC
* * * *
43654595 ATAGTCTTACATTAACTCTCGTCTCAT-T-GTC
64 ATGGTCTTACACTAACTCTC--ATCATGTGGCC
**
43654626 GATGCCATGTCCCAGACATGGTCTTACACTAGTACACATATCAATGCCAATGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGT-CACATATC-ATGCTGATGCCATGTCCCAAAC
* *
43654691 ATGGTCTTACACTAGCTCTCATGATGTGGCC
64 ATGGTCTTACACTAACTCTCATCATGTGGCC
*
43654722 GATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCACA-A-CATCGCTGATGCCATGTTCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAG---TCACATATCAT-GCTGATGCCATGTCCCAA
43654785 ACATGGTCTTACACTA
62 ACATGGTCTTACACTA
43654801 GCACACATAT
Statistics
Matches: 152, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
94 3 0.02
95 4 0.03
96 139 0.91
97 1 0.01
98 4 0.03
99 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGTCACATATCATGCTGATGCCATGTCCCAAACAT
GGTCTTACACTAACTCTCATCATGTGGCC
Found at i:43654708 original size:144 final size:144
Alignment explanation
Indices: 43654531--43654812 Score: 381
Period size: 144 Copynumber: 2.0 Consensus size: 144
43654521 TGAATTGCTG
* *
43654531 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATG-TCGAGGCTGATGCCATGTCCCAAAC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGAT-GAGGCCGATGCCATGTCCCAAAC
* * * * * *
43654595 ATAGTCTTACATTAACTCTCGTC-TCATTG-TCGATGCCATGTCCCAGACATGGTCTTACACTAG
65 ATAGTCTTACACTAACCCTC-ACAACATCGCT-GATGCCATGTCCCAAACATGGTCTTACACTAG
*
43654658 TACACATATCAATGCCA
128 CACACATATCAATGCCA
* * *
43654675 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATGATGTGGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGATGAGGCCGATGCCATGTCCCAAACA
* * *
43654740 TGGTCTTACACTAGCCCTCACAACATCGCTGATGCCATGTTCCAAACATGGTCTTACACTAGCAC
66 TAGTCTTACACTAACCCTCACAACATCGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCAC
43654805 ACATATCA
131 ACATATCA
43654813 CCCAAATGTC
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
143 1 0.01
144 117 0.98
145 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATGATGAGGCCGATGCCATGTCCCAAACA
TAGTCTTACACTAACCCTCACAACATCGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCAC
ACATATCAATGCCA
Found at i:43658484 original size:24 final size:24
Alignment explanation
Indices: 43658457--43658518 Score: 124
Period size: 24 Copynumber: 2.6 Consensus size: 24
43658447 CTTATTATGT
43658457 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
43658481 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
43658505 TCGCACACATAGTG
1 TCGCACACATAGTG
43658519 TATTTGAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:43666362 original size:24 final size:24
Alignment explanation
Indices: 43666335--43666397 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
43666325 CTTATTATGT
43666335 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
43666359 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
43666383 TCGCACACATAGTGC
1 TCGCACACATAGTGC
43666398 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:43668595 original size:281 final size:283
Alignment explanation
Indices: 43668090--43668654 Score: 1107
Period size: 281 Copynumber: 2.0 Consensus size: 283
43668080 TATATATATA
43668090 TATATATTCTTAATTTTTCTTTTATAAATTATCTCAAACTCTAGCATATATTATTTGATTGTTAG
1 TATATATTCTTAATTTTTCTTTTATAAATTATCTCAAACTCTAGCATATATTATTTGATTGTTAG
43668155 TCCATCATTTTTAATTCATTATTTTTGTGTCGTGTTGATCCTATATCGTTTGGTATCTCATGTGT
66 TCCATCATTTTTAATTCATTATTTTTGTGTCGTGTTGATCCTATATCGTTTGGTATCTCATGTGT
43668220 TAATTATCTTCACGATATTTCTCGTATATTTGCTATGTCGTGCCTGCTCATTTTTATATGTTACC
131 TAATTATCTTCACGATATTTCTCGTATATTTGCTATGTCGTGCCTGCTCATTTTTATATGTTACC
*
43668285 ACATCAATTATTCTCCATGCATTATTGAAATCGGGTTACATTTTTAGGTTTGCTATGTTTAATTA
196 ACATCAATTATTCTCCATGCATTATTGAAATCGGGTTACATTTTTAGGTTAGCTATGTTTAATTA
43668350 TTAGTTTGTTAGTTGATCGTACT
261 TTAGTTTGTTAGTTGATCGTACT
43668373 TATATATTCTTAATTTTTCTTTTATAAATTATCTCAAACTCTAGCATATATTATTTGATTGTTAG
1 TATATATTCTTAATTTTTCTTTTATAAATTATCTCAAACTCTAGCATATATTATTTGATTGTTAG
43668438 TCCATCATTTTTAATTCATTA-TTTT-TGTCGTGTTGATCCTATATCGTTTGGTATCTCATGTGT
66 TCCATCATTTTTAATTCATTATTTTTGTGTCGTGTTGATCCTATATCGTTTGGTATCTCATGTGT
43668501 TAATTATCTTCACGATATTTCTCGTATATTTGCTATGTCGTGCCTGCTCATTTTTATATGTTACC
131 TAATTATCTTCACGATATTTCTCGTATATTTGCTATGTCGTGCCTGCTCATTTTTATATGTTACC
43668566 ACATCAATTATTCTCCATGCATTATTGAAATCGGGTTACATTTTTAGGTTAGCTATGTTTAATTA
196 ACATCAATTATTCTCCATGCATTATTGAAATCGGGTTACATTTTTAGGTTAGCTATGTTTAATTA
43668631 TTAGTTTGTTAGTTGATCGTACT
261 TTAGTTTGTTAGTTGATCGTACT
43668654 T
1 T
43668655 TTATGCATAC
Statistics
Matches: 281, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
281 191 0.68
282 4 0.01
283 86 0.31
ACGTcount: A:0.24, C:0.15, G:0.13, T:0.49
Consensus pattern (283 bp):
TATATATTCTTAATTTTTCTTTTATAAATTATCTCAAACTCTAGCATATATTATTTGATTGTTAG
TCCATCATTTTTAATTCATTATTTTTGTGTCGTGTTGATCCTATATCGTTTGGTATCTCATGTGT
TAATTATCTTCACGATATTTCTCGTATATTTGCTATGTCGTGCCTGCTCATTTTTATATGTTACC
ACATCAATTATTCTCCATGCATTATTGAAATCGGGTTACATTTTTAGGTTAGCTATGTTTAATTA
TTAGTTTGTTAGTTGATCGTACT
Found at i:43668958 original size:131 final size:130
Alignment explanation
Indices: 43668821--43669195 Score: 340
Period size: 130 Copynumber: 2.9 Consensus size: 130
43668811 AAAGGTGATA
* * * *
43668821 TTCGATATTTGGCAATGT-GTGGGATTGTGCCCTAACGTGTTGGGTTGCAATCTCTCATTTGCTC
1 TTCGATATTTGACAAT-TCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATCTCTCATTTGCTC
** **
43668885 AAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGTCTTTTAAAAATTCTTTAAAAGGAGACGA
65 AAAACAATCGAACATCCCTTTAGAATTTCACCCATG-CTTTTAAAAATTCTTTAAAAGGAGACGA
43668950 TG
129 TG
* * * *
43668952 TTCGATATTTGACAATTCGCGGAATCGTGCCCTATCGTGTTGGGTTGCAATTTCTCGTTTGTTCA
1 TTCGATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATCTCTCATTTGCTCA
* ** * ** * * *
43669017 AAACAATCGAACATTCCTTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAATGAAGGCAAT
66 AAACAATCGAACATCCCTTTAGAATTTCACCCATGCTTTTAAAAATTCTTTAAAA-GGAGACGAT
*
43669082 A
130 G
* * * ** * * * * ** * * *
43669083 CTCGGTGTTTGGTAATTC-AGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCA
1 TTCGATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATCTCTCATTTGCTCA
* * ** *
43669147 AAACAATCGAATATTCCTTTAGGTTTTCACTCATGCTTTTAAAAATTCT
66 AAACAATCGAACATCCCTTTAGAATTTCACCCATGCTTTTAAAAATTCT
43669196 CCAAAACGAA
Statistics
Matches: 209, Mismatches: 33, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
130 108 0.52
131 101 0.48
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (130 bp):
TTCGATATTTGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATCTCTCATTTGCTCA
AAACAATCGAACATCCCTTTAGAATTTCACCCATGCTTTTAAAAATTCTTTAAAAGGAGACGATG
Found at i:43669135 original size:130 final size:132
Alignment explanation
Indices: 43668972--43669247 Score: 457
Period size: 130 Copynumber: 2.1 Consensus size: 132
43668962 GACAATTCGC
* *
43668972 GGAATCGTGCCCTATCGTGTTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAACATTCCTTT
1 GGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAACATTCCTTT
* *
43669037 AGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAATGAAGGCAATACTCGGTGTTT-GGTAA-TT
66 AGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGGTGTTTAGGAAATTT
43669100 CA
131 CA
** *
43669102 GGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTT
1 GGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAACATTCCTTT
*
43669167 AGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATGCTCGGTGTTTAGGAAATTT
66 AGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGGTGTTTAGGAAATTT
*
43669232 GA
131 CA
43669234 GGAATCATGCCCTA
1 GGAATCATGCCCTA
43669248 CTGTGTTGGG
Statistics
Matches: 135, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
130 114 0.84
131 4 0.03
132 17 0.13
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (132 bp):
GGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAACATTCCTTT
AGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGCAATACTCGGTGTTTAGGAAATTT
CA
Found at i:43670499 original size:25 final size:25
Alignment explanation
Indices: 43670463--43670510 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
43670453 TTATGATTAT
*
43670463 TTTATGCGATTTAGTCATTTTTCCC
1 TTTATGCAATTTAGTCATTTTTCCC
*
43670488 TTTATGCAATTTAGTCCTTTTTC
1 TTTATGCAATTTAGTCATTTTTC
43670511 GGAATTGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.17, C:0.19, G:0.10, T:0.54
Consensus pattern (25 bp):
TTTATGCAATTTAGTCATTTTTCCC
Found at i:43674552 original size:25 final size:23
Alignment explanation
Indices: 43674500--43674554 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
43674490 TATAAATAGT
43674500 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
43674523 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
43674548 AATAGTG
1 AATAGTG
43674555 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:43674674 original size:22 final size:24
Alignment explanation
Indices: 43674616--43674683 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
43674606 ATAGATATAA
* *
43674616 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
43674640 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
43674664 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
43674684 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:43674729 original size:25 final size:25
Alignment explanation
Indices: 43674701--43674831 Score: 82
Period size: 23 Copynumber: 5.6 Consensus size: 25
43674691 AAAAAAAAAT
43674701 ATATATAAATAATATAGTATTAAAG
1 ATATATAAATAATATAGTATTAAAG
* * *
43674726 ATATATACATAAAATAGTA-T-AAT
1 ATATATAAATAATATAGTATTAAAG
** * *
43674749 ATATATATGTAATATAGAATT-TAG
1 ATATATAAATAATATAGTATTAAAG
** *
43674773 A-ATATACCTAATATA-T-TAAAAG
1 ATATATAAATAATATAGTATTAAAG
* *
43674795 A-ATATATATATATATAATATTAAA-
1 ATATATAAATA-ATATAGTATTAAAG
43674819 ATATAT-AATAATA
1 ATATATAAATAATA
43674832 ACAAAAAAAG
Statistics
Matches: 82, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 1 0.01
22 10 0.12
23 37 0.45
24 9 0.11
25 25 0.30
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.37
Consensus pattern (25 bp):
ATATATAAATAATATAGTATTAAAG
Found at i:43674756 original size:27 final size:25
Alignment explanation
Indices: 43674697--43674756 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
43674687 GTAGAAAAAA
*
43674697 AAATATATATAAATAATATAGTATT
1 AAATATATATAAATAAAATAGTATT
* *
43674722 AAAGATATATACATAAAATAGTA-T
1 AAATATATATAAATAAAATAGTATT
43674746 AATATATATAT
1 AA-ATATATAT
43674757 GTAATATAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 3 0.10
25 27 0.90
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (25 bp):
AAATATATATAAATAAAATAGTATT
Found at i:43674907 original size:29 final size:29
Alignment explanation
Indices: 43674865--43674933 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
43674855 GGGTGATTTT
43674865 CGGCCACCGTCCGGTCACC-AAACCGCCGC
1 CGGCCACCGTCCGGTCACCGAAA-CGCCGC
*
43674894 CGGCCACCGTCCGGTCACCGAAACGCTGC
1 CGGCCACCGTCCGGTCACCGAAACGCCGC
43674923 CGGCCACCGTC
1 CGGCCACCGTC
43674934 GGTGCCACCG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.16, C:0.49, G:0.26, T:0.09
Consensus pattern (29 bp):
CGGCCACCGTCCGGTCACCGAAACGCCGC
Found at i:43680222 original size:13 final size:13
Alignment explanation
Indices: 43680206--43680247 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
43680196 ATCATTAATA
43680206 TAATTTATTATTT
1 TAATTTATTATTT
*
43680219 TAA-TAATTATTT
1 TAATTTATTATTT
* *
43680231 TAATTTTTTATTC
1 TAATTTATTATTT
43680244 TAAT
1 TAAT
43680248 AATAAATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (13 bp):
TAATTTATTATTT
Found at i:43680227 original size:25 final size:25
Alignment explanation
Indices: 43680199--43680250 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
43680189 TATTAATATC
*
43680199 ATTAATATAATTTATTATTTTAATA
1 ATTAATATAATTTATTATTCTAATA
* * *
43680224 ATTATTTTAATTTTTTATTCTAATA
1 ATTAATATAATTTATTATTCTAATA
43680249 AT
1 AT
43680251 AAATTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (25 bp):
ATTAATATAATTTATTATTCTAATA
Found at i:43681822 original size:40 final size:40
Alignment explanation
Indices: 43681777--43681857 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
43681767 ATGATTGAAA
43681777 ATAAAAATATAAAATTAAATTATAGTTTCTACCTGTAATC
1 ATAAAAATATAAAATTAAATTATAGTTTCTACCTGTAATC
*
43681817 ATAAAAATATAAAATTAAATTATAGTTTCTACTTGTAATC
1 ATAAAAATATAAAATTAAATTATAGTTTCTACCTGTAATC
43681857 A
1 A
43681858 AGCTAATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (40 bp):
ATAAAAATATAAAATTAAATTATAGTTTCTACCTGTAATC
Found at i:43688712 original size:29 final size:29
Alignment explanation
Indices: 43688680--43688781 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
43688670 ATAGTGAATC
*
43688680 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGTT
*
43688709 CGCATACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTT
43688738 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTT
43688767 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43688782 GTACAATTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGTT
Found at i:43696509 original size:29 final size:29
Alignment explanation
Indices: 43696477--43696578 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
43696467 ATAGTGAATC
*
43696477 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGTT
*
43696506 CGCATACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTT
43696535 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTT
43696564 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43696579 GTACAATTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGTT
Found at i:43704295 original size:29 final size:29
Alignment explanation
Indices: 43704263--43704364 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
43704253 ATAGTGAATC
*
43704263 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGTT
*
43704292 CGCATACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTT
43704321 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTT
43704350 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43704365 GTACAATTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGTT
Found at i:43707050 original size:93 final size:91
Alignment explanation
Indices: 43706891--43707111 Score: 307
Period size: 93 Copynumber: 2.4 Consensus size: 91
43706881 TTCGACATGA
* * * * *
43706891 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCATTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTGTCACGTTGCCATGGTATCATTCAAC
** * *
43706956 CATGGTCTTATTCATTTCCCCGTCACGT
65 CATGGTCTTACACATTT-CACATCACGT
*
43706984 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TGTCACGTTGCCATGGTATCATTCAAC
* *
43707049 CATGGTCTTACACATTTCATATCAGGT
65 CATGGTCTTACACATTTCACATCACGT
43707076 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
43707112 TCTATCAGAG
Statistics
Matches: 115, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
92 46 0.40
93 69 0.60
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTGTCACGTTGCCATGGTATCATTCAACC
ATGGTCTTACACATTTCACATCACGT
Found at i:43707119 original size:46 final size:46
Alignment explanation
Indices: 43706891--43707114 Score: 299
Period size: 46 Copynumber: 4.8 Consensus size: 46
43706881 TTCGACATGA
* * * * *
43706891 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
* ** * *
43706937 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTGTCACGT
43706984 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
* *
43707030 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
43707076 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT
43707115 ATCAGAGAGC
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
45 1 0.01
46 118 0.74
47 41 0.26
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
Found at i:43709203 original size:11 final size:11
Alignment explanation
Indices: 43709187--43709238 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
43709177 TATACTAAAT
43709187 AAATAATAATA
1 AAATAATAATA
*
43709198 AAATAAT-ATT
1 AAATAATAATA
* *
43709208 AAATATCTCATA
1 AAATA-ATAATA
*
43709220 AAATATTAATA
1 AAATAATAATA
43709231 AAATAATA
1 AAATAATA
43709239 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:43710743 original size:22 final size:24
Alignment explanation
Indices: 43710696--43710759 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 24
43710686 TTATTATGCA
*
43710696 CTAATGAACAGAGAGCATTGAAGTG
1 CTAAT-AACAGAGAGCACTGAAGTG
**
43710721 CT-AT-ACAGAGAGCACTGGCGTG
1 CTAATAACAGAGAGCACTGAAGTG
43710743 CTAATAATCAGAGAGCA
1 CTAATAA-CAGAGAGCA
43710760 TGCTGAGGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 17 0.52
23 2 0.06
24 3 0.09
25 11 0.33
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.19
Consensus pattern (24 bp):
CTAATAACAGAGAGCACTGAAGTG
Found at i:43712185 original size:93 final size:91
Alignment explanation
Indices: 43712026--43712246 Score: 289
Period size: 93 Copynumber: 2.4 Consensus size: 91
43712016 TTCGACATGA
* * * * * * *
43712026 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCTTGTTATCATTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTGTCACGTTGCCATGGTATCATTCAAC
** * *
43712091 CATGGTCTTATTCATTTCCCCGTCACGT
65 CATGGTCTTACACATTT-CACATCACGT
*
43712119 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TGTCACGTTGCCATGGTATCATTCAAC
* *
43712184 CATGGTCTTACACATTTCATATCAGGT
65 CATGGTCTTACACATTTCACATCACGT
43712211 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
43712247 TCTATCAGAG
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
92 46 0.41
93 67 0.59
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.40
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTGTCACGTTGCCATGGTATCATTCAACC
ATGGTCTTACACATTTCACATCACGT
Found at i:43712254 original size:46 final size:46
Alignment explanation
Indices: 43712026--43712249 Score: 281
Period size: 46 Copynumber: 4.8 Consensus size: 46
43712016 TTCGACATGA
* * * * *
43712026 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
* * * ** * *
43712072 TGCCTTGTTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTGTCACGT
43712119 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
* *
43712165 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
43712211 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT
43712250 ATCAGAGAGC
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
45 1 0.01
46 116 0.74
47 39 0.25
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
Found at i:43714364 original size:11 final size:11
Alignment explanation
Indices: 43714348--43714432 Score: 75
Period size: 11 Copynumber: 7.7 Consensus size: 11
43714338 TATACTAAAT
43714348 AAATAATAATA
1 AAATAATAATA
*
43714359 AAATAAT-ATT
1 AAATAATAATA
* *
43714369 AAATATCTCATA
1 AAATA-ATAATA
43714381 AAATAATAATA
1 AAATAATAATA
*
43714392 AAATAAT-ATT
1 AAATAATAATA
* *
43714402 AAATATCTCATA
1 AAATA-ATAATA
*
43714414 AAATATTAATA
1 AAATAATAATA
43714425 AAATAATA
1 AAATAATA
43714433 TTTATCTAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
10 14 0.24
11 31 0.53
12 14 0.24
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:43714387 original size:33 final size:33
Alignment explanation
Indices: 43714348--43714434 Score: 165
Period size: 33 Copynumber: 2.6 Consensus size: 33
43714338 TATACTAAAT
43714348 AAATAATAATAAAATAATATTAAATATCTCATA
1 AAATAATAATAAAATAATATTAAATATCTCATA
43714381 AAATAATAATAAAATAATATTAAATATCTCATA
1 AAATAATAATAAAATAATATTAAATATCTCATA
*
43714414 AAATATTAATAAAATAATATT
1 AAATAATAATAAAATAATATT
43714435 TATCTAATTA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (33 bp):
AAATAATAATAAAATAATATTAAATATCTCATA
Found at i:43715562 original size:31 final size:31
Alignment explanation
Indices: 43715524--43715596 Score: 128
Period size: 31 Copynumber: 2.4 Consensus size: 31
43715514 AGTTACTGGA
43715524 CCGAAGCCTTTTCATAAATCATATCACTAGG
1 CCGAAGCCTTTTCATAAATCATATCACTAGG
*
43715555 CCGAAGCCTTTTCATAAATCATATCACTGGG
1 CCGAAGCCTTTTCATAAATCATATCACTAGG
*
43715586 TCGAAGCCTTT
1 CCGAAGCCTTT
43715597 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (31 bp):
CCGAAGCCTTTTCATAAATCATATCACTAGG
Found at i:43715667 original size:42 final size:42
Alignment explanation
Indices: 43715620--43715711 Score: 184
Period size: 42 Copynumber: 2.2 Consensus size: 42
43715610 TGGCCCTTAG
43715620 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
43715662 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
43715704 GCCCATTT
1 GCCCATTT
43715712 GGGGAGACTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:43716947 original size:27 final size:27
Alignment explanation
Indices: 43716810--43716993 Score: 117
Period size: 27 Copynumber: 6.7 Consensus size: 27
43716800 TTTCATCCTA
* * * *
43716810 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
43716837 CAAGGGTATTTCAGTAATTTT-CTAAAC
1 CAAGGGTATTTTGGTAATTTTAC-AAAT
* * * *
43716864 CAATGGTATTCCT-ATAATTTTTAAAAAAGT
1 CAAGGGTATT-TTGGTAA-TTTT-ACAAA-T
**
43716894 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
43716921 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
**
43716948 TGAGGGTATTTTGGTAATTTCT-CAAA-
1 CAAGGGTATTTTGGTAATTT-TACAAAT
*
43716974 CCAGTGGTATTTTGGTAATT
1 CAAG-GGTATTTTGGTAATT
43716994 CTATCCTACA
Statistics
Matches: 125, Mismatches: 22, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
26 4 0.03
27 93 0.74
28 8 0.06
29 7 0.06
30 13 0.10
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:43717045 original size:26 final size:26
Alignment explanation
Indices: 43717014--43717116 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 26
43717004 GAGATATTTC
* *
43717014 AGTAATTTCACAATCGAGGGTAAAAT
1 AGTAATTTTAAAATCGAGGGTAAAAT
*
43717040 AGTAATTTTGTAAA-CTGAGGGTAAAAT
1 AGTAATTTT-AAAATC-GAGGGTAAAAT
*
43717067 GGTAATTTTATAAATCGAGGGTAAAA-
1 AGTAATTTTA-AAATCGAGGGTAAAAT
* *
43717093 CGATAATTCTATAAATCGAGGGTA
1 AG-TAATTTTA-AAATCGAGGGTA
43717117 CTTTGGTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.15
27 54 0.83
28 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (26 bp):
AGTAATTTTAAAATCGAGGGTAAAAT
Found at i:43717063 original size:27 final size:27
Alignment explanation
Indices: 43717025--43717116 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
43717015 GTAATTTCAC
*
43717025 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTATA
*
43717052 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAATAGTAATTTTATA
* *
43717079 AATCGAGGGTAAAA-CGATAATTCTATA
1 AATCGAGGGTAAAATAG-TAATTTTATA
43717106 AATCGAGGGTA
1 AATCGAGGGTA
43717117 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
26 2 0.03
27 55 0.95
28 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTTTATA
Found at i:43717114 original size:54 final size:54
Alignment explanation
Indices: 43717025--43717130 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
43717015 GTAATTTCAC
* * *
43717025 AATCGAGGGTAAAATAGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAAGAGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTATA
***
43717079 AATCGAGGGTAAAACGA-TAATTCTATAAA-TCGAGGGTACTTTGGTAATTTTA
1 AATCGAGGGTAAAA-GAGTAATTCTATAAACT-GAGGGTAAAATGGTAATTTTA
43717131 CAAGTTGAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
53 1 0.02
54 42 0.95
55 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.33
Consensus pattern (54 bp):
AATCGAGGGTAAAAGAGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTATA
Found at i:43717379 original size:28 final size:28
Alignment explanation
Indices: 43717339--43717400 Score: 124
Period size: 28 Copynumber: 2.2 Consensus size: 28
43717329 GGGCCCGTAA
43717339 GCCCATTAGGCCCACATGACCCCTTTCG
1 GCCCATTAGGCCCACATGACCCCTTTCG
43717367 GCCCATTAGGCCCACATGACCCCTTTCG
1 GCCCATTAGGCCCACATGACCCCTTTCG
43717395 GCCCAT
1 GCCCAT
43717401 CGCGGCCCGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.18, C:0.44, G:0.18, T:0.21
Consensus pattern (28 bp):
GCCCATTAGGCCCACATGACCCCTTTCG
Found at i:43719730 original size:24 final size:25
Alignment explanation
Indices: 43719689--43719756 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
43719679 CTCTTTTAAT
43719689 AACTGGGGCAAAGCCCTTTCT-GATA
1 AACTGGGGCAAAG-CCTTTCTCGATA
* *
43719714 AACTGGGGCAAAGCCTTTTTCGGTA
1 AACTGGGGCAAAGCCTTTCTCGATA
* *
43719739 AACTAGGGCAAAGGCTTT
1 AACTGGGGCAAAGCCTTT
43719757 GAGGTAGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 6 0.16
25 32 0.84
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCTTTCTCGATA
Found at i:43721736 original size:20 final size:19
Alignment explanation
Indices: 43721691--43721728 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
43721681 GAGAGAAAGG
43721691 AACGAG-AAACGGGCCAAA
1 AACGAGAAAACGGGCCAAA
*
43721709 AACAGAGAAAATGGGCCAAA
1 AAC-GAGAAAACGGGCCAAA
43721729 GTACGAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 3 0.18
20 11 0.65
ACGTcount: A:0.53, C:0.18, G:0.26, T:0.03
Consensus pattern (19 bp):
AACGAGAAAACGGGCCAAA
Found at i:43727088 original size:27 final size:27
Alignment explanation
Indices: 43727058--43727134 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
43727048 AGACCCCATG
*
43727058 AAATGACTGTTATACCCCTATGAGGTA
1 AAATGACTGTTATACCCCTATGAAGTA
* *
43727085 AAATGACTGTTATACCACTATAAAGTA
1 AAATGACTGTTATACCCCTATGAAGTA
* * *
43727112 AAATAACTGATATACCCTTATGA
1 AAATGACTGTTATACCCCTATGA
43727135 TATGTATGAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (27 bp):
AAATGACTGTTATACCCCTATGAAGTA
Found at i:43734960 original size:27 final size:27
Alignment explanation
Indices: 43734899--43734972 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
43734889 CAGTTTGATG
* *
43734899 AAATGATTGTTATACCCCT-TGAGGTA
1 AAATGACTGTTATACCCCTATGAAGTA
43734925 AAATGACTGTTATACCCCTATGAAGTA
1 AAATGACTGTTATACCCCTATGAAGTA
*
43734952 AAATGACTGATATACCCCTAT
1 AAATGACTGTTATACCCCTAT
43734973 AATATGTATG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 18 0.41
27 26 0.59
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (27 bp):
AAATGACTGTTATACCCCTATGAAGTA
Found at i:43740920 original size:16 final size:16
Alignment explanation
Indices: 43740899--43740929 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43740889 TTGGGGCATA
*
43740899 AAAAAATTTACTTTTT
1 AAAAAATTTAATTTTT
43740915 AAAAAATTTAATTTT
1 AAAAAATTTAATTTT
43740930 CTCGCATTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
AAAAAATTTAATTTTT
Found at i:43741842 original size:17 final size:19
Alignment explanation
Indices: 43741800--43741843 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
43741790 ATGAAATTTT
*
43741800 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
43741819 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
43741837 AA-TATTA
1 AATTATTA
43741844 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:43743670 original size:28 final size:28
Alignment explanation
Indices: 43743638--43743706 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
43743628 GCGTAGATCA
43743638 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
43743666 CGAAATTACCCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
43743694 CGATA-TACCCCTA
1 CGAAATTACCCCTA
43743707 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.42, C:0.28, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:43745409 original size:53 final size:54
Alignment explanation
Indices: 43745324--43745553 Score: 185
Period size: 53 Copynumber: 4.3 Consensus size: 54
43745314 ATACTAAGGA
* * * * * *
43745324 TACACTGGTA-CCTTTCCTTTTTAAACTTACCATTTCCATGTCTTGACATGGTCT
1 TACA-TGGTATCCTTGCCTTATAAAACTCACCATTGCCATGCCTTGACATGGTCT
** *
43745378 TATGTGGTATCCTTGCCTTAT-AAACTCACCATTGCCATGCCTTGGCATGGTCT
1 TACATGGTATCCTTGCCTTATAAAACTCACCATTGCCATGCCTTGACATGGTCT
* * ** ** * * * *
43745431 TACATGGGATCTTTGCCTTATCGTAGTTTATCAATGCCATGTCTTGACATGGTCT
1 TACATGGTATCCTTGCCTTAT-AAAACTCACCATTGCCATGCCTTGACATGGTCT
* * * * * * *
43745486 TACATGATTTCCCTGCCTTGTAAAACTCACCAATGTCATGCCTTGGCATGGTCT
1 TACATGGTATCCTTGCCTTATAAAACTCACCATTGCCATGCCTTGACATGGTCT
*
43745540 TACTTGGTATCCTT
1 TACATGGTATCCTT
43745554 AAACCCTAAT
Statistics
Matches: 134, Mismatches: 39, Indels: 6
0.75 0.22 0.03
Matches are distributed among these distances:
53 50 0.37
54 45 0.34
55 39 0.29
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.39
Consensus pattern (54 bp):
TACATGGTATCCTTGCCTTATAAAACTCACCATTGCCATGCCTTGACATGGTCT
Found at i:43749500 original size:27 final size:27
Alignment explanation
Indices: 43749470--43749611 Score: 99
Period size: 27 Copynumber: 5.3 Consensus size: 27
43749460 TTAGTTTACC
* *
43749470 AAATTACCAGAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
*
43749497 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAATTTGTA
** * **
43749524 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-AATTTGTA
*** * *
43749551 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-AATTTGTA
* * *
43749578 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTAATTTGTA
*
43749605 GAATTAC
1 AAATTAC
43749612 TATTTTACCC
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
26 4 0.04
27 87 0.92
28 4 0.04
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAATTTGTA
Found at i:43749620 original size:27 final size:27
Alignment explanation
Indices: 43749593--43749719 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
43749583 ACCAAAGTAC
* *
43749593 CCCT-GATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
43749619 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
43749646 CCCTCGATTTACAAAATTACCGTCTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
43749673 CCCTCGATTTACAGAATTACCAATTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
43749700 CCCTCAATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
43749720 TGAAATACCC
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 4 0.04
27 85 0.96
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.37
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:43749648 original size:54 final size:55
Alignment explanation
Indices: 43749563--43749719 Score: 176
Period size: 54 Copynumber: 2.9 Consensus size: 55
43749553 ATTATTGAAA
* * * ** * * * *
43749563 TACCCTCGACTTGTAAAATTACCAAAGTACCCCT-GATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCAATTTACCCCTCGATTTACAAAATTACCATCT
* *
43749617 TACCCTCGATTTATAGAATTACCATTTTA-CCCTCGATTTACAAAATTACCGTCT
1 TACCCTCGATTTATAGAATTACCAATTTACCCCTCGATTTACAAAATTACCATCT
* *
43749671 TACCCTCGATTTACAGAATTACCAATTTA-CCCTCAATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTACCAATTTACCCCTCGATTTACAAAATTAC
43749720 TGAAATACCC
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 4 0.05
54 84 0.95
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (55 bp):
TACCCTCGATTTATAGAATTACCAATTTACCCCTCGATTTACAAAATTACCATCT
Found at i:43749728 original size:27 final size:27
Alignment explanation
Indices: 43749524--43749838 Score: 133
Period size: 27 Copynumber: 11.7 Consensus size: 27
43749514 CTAATTTGTG
* ** **
43749524 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCGAAATACCCTCGATTTACA
** * **
43749551 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTACA
*
43749578 AAATTACC-AAAGTACCC-CTGATTTATA
1 AAATTACCGAAA-TACCCTC-GATTTACA
* * ** *
43749605 GAATTA-CTATTTTACCCTCGATTTATA
1 AAATTACCGA-AATACCCTCGATTTACA
* **
43749632 GAATTACC-ATTTTACCCTCGATTTACA
1 AAATTACCGA-AATACCCTCGATTTACA
***
43749659 AAATTACCGTCTTACCCTCGATTTACA
1 AAATTACCGAAATACCCTCGATTTACA
* * *
43749686 GAATTACC-AATTTACCCTCAATTTACA
1 AAATTACCGAA-ATACCCTCGATTTACA
* *
43749713 AAATTACTGAAATACCCTTTG-TTTACA
1 AAATTACCGAAATACCC-TCGATTTACA
* * ** *
43749740 AAATTACCAAAATACCCTTGATCAATA
1 AAATTACCGAAATACCCTCGATTTACA
* * **
43749767 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCGAAATACCCTC-GATTTACA
* * ***
43749794 AAATTATCAAAATACCC-CTGATTTTTG
1 AAATTACCGAAATACCCTC-GATTTACA
43749821 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
43749839 TGTAGAGTAG
Statistics
Matches: 237, Mismatches: 38, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
26 8 0.03
27 224 0.95
28 5 0.02
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTACA
Found at i:43749729 original size:54 final size:54
Alignment explanation
Indices: 43749617--43749749 Score: 169
Period size: 54 Copynumber: 2.5 Consensus size: 54
43749607 ATTACTATTT
* * * ***
43749617 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTCT
1 TACCCTCGATTTACAGAATTACCAATTTACCCTCAATTTACAAAATTACCGAAA
*
43749671 TACCCTCGATTTACAGAATTACCAATTTACCCTCAATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAGAATTACCAATTTACCCTCAATTTACAAAATTACCGAAA
* *
43749725 TACCCTTTG-TTTACAAAATTACCAA
1 TACCC-TCGATTTACAGAATTACCAA
43749750 AATACCCTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 67 0.97
55 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCAATTTACCCTCAATTTACAAAATTACCGAAA
Found at i:43749729 original size:81 final size:81
Alignment explanation
Indices: 43749550--43749761 Score: 196
Period size: 81 Copynumber: 2.6 Consensus size: 81
43749540 CTCGACCTGT
* * ** * * *
43749550 AAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGATTTATAGAATTACTAT
1 AAAATTACTGAAATACCCTCGATTTACAAAATTACCAAAGTACCCCTGATTTACAGAATTACCAA
* *
43749615 TTTACCCTCGATTTAT
66 TTTACCCTCAATTTAC
* * ** ****
43749631 AGAATTAC-CATTTTACCCTCGATTTACAAAATTACCGTCTTA-CCCTCGATTTACAGAATTACC
1 AAAATTACTGA-AATACCCTCGATTTACAAAATTACCAAAGTACCCCT-GATTTACAGAATTACC
43749694 AATTTACCCTCAATTTAC
64 AATTTACCCTCAATTTAC
* * *
43749712 AAAATTACTGAAATACCCTTTG-TTTACAAAATTACCAAAATACCCTTGAT
1 AAAATTACTGAAATACCC-TCGATTTACAAAATTACCAAAGTACCCCTGAT
43749762 CAATAAAATT
Statistics
Matches: 99, Mismatches: 27, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
80 5 0.05
81 88 0.89
82 6 0.06
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (81 bp):
AAAATTACTGAAATACCCTCGATTTACAAAATTACCAAAGTACCCCTGATTTACAGAATTACCAA
TTTACCCTCAATTTAC
Done.