Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 162 of 345
Found at i:45014876 original size:61 final size:61
Alignment explanation
Indices: 45014781--45014904 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
45014771 CATTCGAACT
45014781 CGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACCAGGCATCCGAACTCGTTGAGTTGAGTC
1 CGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACCAGGCATCCGAACTCGTTGAGTTGAGTC
45014842 CGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACCAGGCATCCGAACTCGTTGAGTTGAGTC
1 CGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACCAGGCATCCGAACTCGTTGAGTTGAGTC
45014903 CG
1 CG
45014905 AGTTCATTTA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.27
Consensus pattern (61 bp):
CGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACCAGGCATCCGAACTCGTTGAGTTGAGTC
Found at i:45017900 original size:15 final size:15
Alignment explanation
Indices: 45017861--45017940 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
45017851 GTATCTTGGG
*
45017861 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
45017876 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
45017891 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
45017906 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
45017921 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
45017935 TTTCTT
1 TTTCTT
45017941 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:45017930 original size:30 final size:30
Alignment explanation
Indices: 45017852--45017939 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
45017842 CATAGTATCG
* * *
45017852 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
45017882 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
45017912 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
45017940 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:45021043 original size:40 final size:40
Alignment explanation
Indices: 45020981--45021198 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
45020971 AAGCCACGTA
* * *
45020981 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
*
45021020 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
45021060 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
45021100 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * ** *
45021140 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
45021180 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45021199 TTATCATCCA
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 13 0.08
40 153 0.92
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:45029140 original size:40 final size:40
Alignment explanation
Indices: 45029078--45029295 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
45029068 AAGCCAAGTA
* * *
45029078 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
*
45029117 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
45029157 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
45029197 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * *
45029237 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
45029277 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45029296 TTATCATCCA
Statistics
Matches: 167, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 13 0.08
40 154 0.92
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:45037493 original size:29 final size:29
Alignment explanation
Indices: 45037403--45037562 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
45037393 ACTCGATTTC
* * **
45037403 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
45037432 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
45037460 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
45037490 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
45037519 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
45037548 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
45037563 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:45045552 original size:29 final size:29
Alignment explanation
Indices: 45045462--45045621 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
45045452 ACTCGATTTC
* * **
45045462 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
45045491 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
45045519 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
45045549 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
45045578 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
45045607 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
45045622 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:45050155 original size:20 final size:20
Alignment explanation
Indices: 45050117--45050155 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
45050107 CATATCAATC
*
45050117 ACATATAAGCATATATAGTT
1 ACATATAAGCACATATAGTT
* *
45050137 ACATATAATCACATTTAGT
1 ACATATAAGCACATATAGT
45050156 CATAGTGTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (20 bp):
ACATATAAGCACATATAGTT
Found at i:45057416 original size:9 final size:10
Alignment explanation
Indices: 45057390--45057430 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
45057380 CAATTAAGGT
45057390 TAGTTAATTA
1 TAGTTAATTA
45057400 TAGTTAATTA
1 TAGTTAATTA
*
45057410 -GGTTAATTA
1 TAGTTAATTA
*
45057419 TAATTAATTA
1 TAGTTAATTA
45057429 TA
1 TA
45057431 AATTAAACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (10 bp):
TAGTTAATTA
Found at i:45057416 original size:19 final size:19
Alignment explanation
Indices: 45057367--45057428 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
45057357 ATGCTCACTA
*
45057367 AATT-GGTTAATTACAATT
1 AATTAGGTTAATTATAATT
*
45057385 AAGGTTA-GTTAATTATAGTT
1 AA--TTAGGTTAATTATAATT
45057405 AATTAGGTTAATTATAATT
1 AATTAGGTTAATTATAATT
45057424 AATTA
1 AATTA
45057429 TAAATTAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.14
19 17 0.46
20 15 0.41
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (19 bp):
AATTAGGTTAATTATAATT
Found at i:45058212 original size:12 final size:11
Alignment explanation
Indices: 45058184--45058216 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
45058174 GGGACCTAAT
45058184 TGTAAAATG-G
1 TGTAAAATGTG
45058194 TGTAAAATGTG
1 TGTAAAATGTG
45058205 TGGTAAAATGTG
1 T-GTAAAATGTG
45058217 AATAAATGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 9 0.43
11 2 0.10
12 10 0.48
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.33
Consensus pattern (11 bp):
TGTAAAATGTG
Found at i:45061291 original size:48 final size:48
Alignment explanation
Indices: 45061220--45061494 Score: 306
Period size: 48 Copynumber: 5.7 Consensus size: 48
45061210 TAAAGTACTA
* * *
45061220 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCAACGCTG
* * * * *
45061268 ATGCCATTTCCCTGACATGGTCTTACACTGGCACACATATAAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCTG
45061316 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCTG
* ** * *
45061364 ATGCCAAGTCTTAAACATGGTCTTACACTGGCACACTTATCAACG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCT-G
* * * **
45061412 ATGCCAGGTCCCAGATC-GGGTCTTACACAGGCACACATATCAACGCCA
1 ATGCCATGTCCCAGA-CATGGTCTTACACTGGCACACATATCAACGCTG
* *
45061460 ATGCCATGTCCGAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
45061495 TTTAGCACGG
Statistics
Matches: 192, Mismatches: 29, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
47 2 0.01
48 186 0.97
49 2 0.01
50 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCTG
Found at i:45068953 original size:47 final size:48
Alignment explanation
Indices: 45068776--45069089 Score: 420
Period size: 48 Copynumber: 6.6 Consensus size: 48
45068766 GCCATATACA
* * *
45068776 ATGCCATGTCCCAGACATGGTCTTACA-T-GAATCCACATATCATCACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCAACACCG
* * *
45068824 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACAAATCAACGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACCG
45068872 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACCG
*
45068920 ATGCCATG-CCTAGACATGGTCTTACACTGGCACACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACCG
* * * *
45068967 ATGCCATG-CCTAGACATGGTCTTACACTGGTACACATATCAACGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACCG
* * * * * *
45069014 ATGCCATATCCCAAACAGGGTCTTACACAGGCACACATATCAACGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACCG
*
45069062 ATGCCATGTCCCATACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
45069090 CAGTACATTT
Statistics
Matches: 241, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
47 89 0.37
48 149 0.62
49 1 0.00
50 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.23
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACCG
Found at i:45072197 original size:42 final size:42
Alignment explanation
Indices: 45072093--45072204 Score: 109
Period size: 42 Copynumber: 2.7 Consensus size: 42
45072083 TACCGTGTCA
* * * *
45072093 ATGCCATATCCCGAATATGGTCTTACATGAAATATCATATCG
1 ATGCCATATCCCAAATATGGTCTTATACGAAATATCATACCG
* * * ****
45072135 ACGCCATGTCTCTTGCATGGTCTTATACGAAATCAT-ATACCG
1 ATGCCATATCCCAAATATGGTCTTATACGAAAT-ATCATACCG
45072177 ATGCCATATCCCAAATATGGTCTTATAC
1 ATGCCATATCCCAAATATGGTCTTATAC
45072205 AGAATCTCCG
Statistics
Matches: 52, Mismatches: 17, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
42 50 0.96
43 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTATACGAAATATCATACCG
Found at i:45072754 original size:26 final size:25
Alignment explanation
Indices: 45072706--45072757 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
45072696 TAACTCATAA
45072706 ATTTCACATTTCACAAATTAGTCCCT
1 ATTTCACATTTCACAAA-TAGTCCCT
45072732 ATTTCACATTTTCATCAAA-AGTCCCT
1 ATTTCACA-TTTCA-CAAATAGTCCCT
45072758 TAACAAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 15 0.62
27 5 0.21
28 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTTCACATTTCACAAATAGTCCCT
Found at i:45081647 original size:15 final size:15
Alignment explanation
Indices: 45081600--45081655 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
45081590 CAAGAAAACT
45081600 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
45081615 -AGATAGAA-AAACCCA
1 GA-ATA-AAGAAATCCA
45081630 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
45081645 GAATAAAGAAA
1 GAATAAAGAAA
45081656 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 3 0.09
15 29 0.83
16 3 0.09
ACGTcount: A:0.62, C:0.12, G:0.14, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:45084707 original size:49 final size:49
Alignment explanation
Indices: 45084651--45084842 Score: 201
Period size: 49 Copynumber: 3.9 Consensus size: 49
45084641 GCCGAAGCTA
* *
45084651 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* *
45084700 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
** ** ** *
45084750 T-TAATACATGTAGTAGCCTGCACTTAGTACTACACACATGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
45084797 TTTTCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 -TCT-GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
45084843 TCACAATAGA
Statistics
Matches: 117, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
46 2 0.02
47 1 0.01
48 1 0.01
49 75 0.64
50 34 0.29
51 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:45084730 original size:23 final size:23
Alignment explanation
Indices: 45084704--45084779 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 23
45084694 CAACAGTCTG
45084704 GTACACATAGTAGCCTGCACTTA
1 GTACACATAGTAGCCTGCACTTA
*
45084727 GTACTACACACGT-GACCT-CACCATTA
1 GTAC-ACATA-GTAG-CCTGCA-C-TTA
* **
45084753 ATACATGTAGTAGCCTGCACTTA
1 GTACACATAGTAGCCTGCACTTA
45084776 GTAC
1 GTAC
45084780 TACACACATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
23 10 0.25
24 13 0.32
25 11 0.28
26 6 0.15
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (23 bp):
GTACACATAGTAGCCTGCACTTA
Found at i:45084828 original size:99 final size:98
Alignment explanation
Indices: 45084662--45084846 Score: 273
Period size: 99 Copynumber: 1.9 Consensus size: 98
45084652 CTGGTACGCA
**
45084662 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
*
45084727 GTACTACACACGTGACCTCACCATTAATACATG
66 GTACTACACACGCGACCTCACCATTAATACATG
* * * *
45084760 TAGTAGCCTGCACTTAGTACTACACACATGATC-ACAGTTTTCGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAACAG-TCT-GGTACACATAGTAGCCTGCACT
*
45084824 TAGTACTACACATGCGACCTCAC
64 TAGTACTACACACGCGACCTCAC
45084847 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
97 4 0.05
98 31 0.40
99 42 0.55
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATTAATACATG
Found at i:45090663 original size:40 final size:40
Alignment explanation
Indices: 45090608--45090760 Score: 261
Period size: 40 Copynumber: 3.8 Consensus size: 40
45090598 GAAAAAAAAA
*
45090608 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
45090648 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
45090688 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
45090728 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGC
45090761 TAGTTGTTAC
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:45092844 original size:21 final size:21
Alignment explanation
Indices: 45092820--45092866 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
45092810 GAAACTGCCT
45092820 GTGTGGAAGGGCAACACGCCC
1 GTGTGGAAGGGCAACACGCCC
*
45092841 GTGTGGAAGGGCAGCACGCCC
1 GTGTGGAAGGGCAACACGCCC
45092862 GTGTG
1 GTGTG
45092867 ACCAACTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.19, C:0.26, G:0.43, T:0.13
Consensus pattern (21 bp):
GTGTGGAAGGGCAACACGCCC
Found at i:45094071 original size:47 final size:47
Alignment explanation
Indices: 45094002--45094228 Score: 193
Period size: 47 Copynumber: 4.9 Consensus size: 47
45093992 GGTAAGGTGC
*
45094002 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCAT-ATCTC-AAG
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCGAAG
* *
45094048 TCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAG
1 -CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCGAAG
* * * * * *
45094096 CTAATG-CATGTCCCAAACATGTCTTACACTGGCTTA-CGTCCCGAGG
1 C-GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAAG
* * * * *
45094142 CCAATG-CATGTCCTAGACATGTCTTACACTAGCTC-TCGTCT-TAATG
1 -CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAA-G
45094188 ACGATGCCATGTCCCAGACATCGTCTTACACTGGCTC-TCAT
1 -CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCAT
45094229 AATGTGGCTG
Statistics
Matches: 149, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 59 0.40
47 67 0.45
48 22 0.15
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAAG
Found at i:45094148 original size:46 final size:46
Alignment explanation
Indices: 45094055--45094171 Score: 139
Period size: 46 Copynumber: 2.5 Consensus size: 46
45094045 AAGTCGATGC
* *
45094055 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCTAATG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCCCGTAGCCAATG
* * *
45094102 CATGTCCCAAACATGTCTTACACTGGCT-TACGTCCCG-AGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCCCGTA-GCCAATG
*
45094148 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
45094172 AGCTCTCGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
45 2 0.03
46 46 0.75
47 13 0.21
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCCCGTAGCCAATG
Found at i:45094260 original size:140 final size:140
Alignment explanation
Indices: 45094008--45094265 Score: 360
Period size: 140 Copynumber: 1.8 Consensus size: 140
45093998 GTGCCGATGC
* * *
45094008 CATGTCCTAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAGACGATGCCATGTCCCAGACATCGTC
*
45094073 TTACACTGACTATCATCTCGTAGCTAATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCCC
66 TTACACTGACTATCATATCGTAGCTAATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCCC
45094138 GAGGCCAATG
131 GAGGCCAATG
* *
45094148 CATGTCCTAGACAT-GTCTTACACTAGCTC-TCGTCTTAATGACGATGCCATGTCCCAGACATCG
1 CATGTCCTAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GACGATGCCATGTCCCAGACATCG
* * * * * *
45094211 TCTTACACTGGCTCTCATAAT-GTGGCTGATGCATGTTCTAAACATGTCTTACACT
64 TCTTACACTGACTATCAT-ATCGTAGCTAATGCATGTCCCAAACATGTCTTACACT
45094266 AGCTCACAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 82 0.80
141 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (140 bp):
CATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAGACGATGCCATGTCCCAGACATCGTC
TTACACTGACTATCATATCGTAGCTAATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCCC
GAGGCCAATG
Found at i:45095809 original size:20 final size:20
Alignment explanation
Indices: 45095751--45095819 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
45095741 ATTTCTATTT
* *
45095751 GTATAAACTGTAATTCATTCA
1 GTATAAACAGTAGTTCA-TCA
* *
45095772 G-ATAACCAGTAGTTCATCC
1 GTATAAACAGTAGTTCATCA
45095791 GTATAAACAGTAGTTCATCTA
1 GTATAAACAGTAGTTCATC-A
45095812 -TATAAACA
1 GTATAAACA
45095820 CATATCTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
19 3 0.08
20 36 0.90
21 1 0.03
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (20 bp):
GTATAAACAGTAGTTCATCA
Found at i:45095990 original size:24 final size:23
Alignment explanation
Indices: 45095963--45096019 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
45095953 GAGCCATGAT
45095963 CGGTAAGCTCT-TCTTGAACTGAAA
1 CGGTAAGCTCTATC--GAACTGAAA
* *
45095987 CGGTAAACTCTATCGAGCTGAAA
1 CGGTAAGCTCTATCGAACTGAAA
45096010 CGGTAAGCTC
1 CGGTAAGCTC
45096020 CAATGAGCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.59
24 10 0.34
25 2 0.07
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (23 bp):
CGGTAAGCTCTATCGAACTGAAA
Found at i:45096027 original size:23 final size:24
Alignment explanation
Indices: 45095981--45096043 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 24
45095971 TCTTCTTGAA
* *
45095981 CTGAAACGGTAAACT-CTATCGAG
1 CTGAAACGGTAAGCTCCAATCGAG
45096004 CTGAAACGGTAAGCTCCAAT-GAG
1 CTGAAACGGTAAGCTCCAATCGAG
* *
45096027 CTAAAAACAGTAAGCTC
1 CT-GAAACGGTAAGCTC
45096044 TTACGAGCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 19 0.56
24 15 0.44
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (24 bp):
CTGAAACGGTAAGCTCCAATCGAG
Found at i:45099450 original size:16 final size:16
Alignment explanation
Indices: 45099418--45099451 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
45099408 TATTTTATTA
45099418 TTTACATTTTAACCAT
1 TTTACATTTTAACCAT
45099434 TTTACCATTTTAA-CAT
1 TTTA-CATTTTAACCAT
45099450 TT
1 TT
45099452 AATAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTACATTTTAACCAT
Found at i:45104984 original size:23 final size:23
Alignment explanation
Indices: 45104671--45104984 Score: 348
Period size: 23 Copynumber: 13.7 Consensus size: 23
45104661 GGAATCTATA
* *
45104671 GGCTACATTTCAGTGGTAACTTC
1 GGCTACATTACAGTGGTAGCTTC
* * * * *
45104694 GACAACAATATAGTGGTAGCTTT
1 GGCTACATTACAGTGGTAGCTTC
45104717 GGCTACATCT-CAGTGGTAGCTTC
1 GGCTACAT-TACAGTGGTAGCTTC
* *
45104740 AGCTACAATACAGTGGTAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
* * * *
45104763 TGCTACAATATAGTGGTAGCTTT
1 GGCTACATTACAGTGGTAGCTTC
45104786 GGCTACATCT-CAGTGGTAGCTTC
1 GGCTACAT-TACAGTGGTAGCTTC
* *
45104809 GGCTACAATACAGTGGTAGCTTT
1 GGCTACATTACAGTGGTAGCTTC
**
45104832 GGCTACATCCCAGTGGTAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
*
45104855 GGCTACAATACAGTGGTAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
45104878 GGCTACATCT-CAGTGGTAGCTTC
1 GGCTACAT-TACAGTGGTAGCTTC
45104901 GGCTACATCT-CAGTGGTAGCTTC
1 GGCTACAT-TACAGTGGTAGCTTC
* *
45104924 GGCTACAATACAGTGGTAGCTTT
1 GGCTACATTACAGTGGTAGCTTC
* * *
45104947 GGCTACGTTATAGTGATAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
*
45104970 GGCTATATTACAGTG
1 GGCTACATTACAGTG
45104985 TAGTACTTTG
Statistics
Matches: 244, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
22 3 0.01
23 238 0.98
24 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (23 bp):
GGCTACATTACAGTGGTAGCTTC
Found at i:45111108 original size:23 final size:23
Alignment explanation
Indices: 45111082--45111345 Score: 318
Period size: 23 Copynumber: 11.5 Consensus size: 23
45111072 GCTACATTTC
*
45111082 AGTGGTAGCTCCGGCTACAATAT
1 AGTGGTAGCTTCGGCTACAATAT
* *
45111105 AGTGGTAGCTTTGGCTAC-ATCT
1 AGTGGTAGCTTCGGCTACAATAT
* *
45111127 CAGTGGTAGCTTCGTCTACAATAC
1 -AGTGGTAGCTTCGGCTACAATAT
*
45111151 AGTGGTAGCTTCGGCTAGAATAT
1 AGTGGTAGCTTCGGCTACAATAT
*
45111174 AGTGGTAGCTTCGGCTACAATAC
1 AGTGGTAGCTTCGGCTACAATAT
* *
45111197 AGTGGTAGCTTTGGCTAC-ATCTT
1 AGTGGTAGCTTCGGCTACAAT-AT
*
45111220 AGTGGTAGCTTCGGCTACAATAC
1 AGTGGTAGCTTCGGCTACAATAT
*
45111243 AGTGGTAGCTTCGGCTAC-ATCT
1 AGTGGTAGCTTCGGCTACAATAT
*
45111265 CAGTGGTAGCTTCGGCTACAATAC
1 -AGTGGTAGCTTCGGCTACAATAT
* * *
45111289 AGTGGTAGCTTTGTCTACAATAC
1 AGTGGTAGCTTCGGCTACAATAT
**
45111312 AGTGGTAGCTTCGGCTACGTTAT
1 AGTGGTAGCTTCGGCTACAATAT
*
45111335 AGTGATAGCTT
1 AGTGGTAGCTT
45111346 TGACTATATT
Statistics
Matches: 205, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
22 7 0.03
23 192 0.94
24 6 0.03
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACAATAT
Found at i:45111361 original size:46 final size:46
Alignment explanation
Indices: 45111071--45111347 Score: 387
Period size: 46 Copynumber: 6.0 Consensus size: 46
45111061 GGAATCTATA
* * *
45111071 GGCTACATTTCAGTGGTAGCTCCGGCTACAATATAGTGGTAGCTTT
1 GGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
* *
45111117 GGCTACATCTCAGTGGTAGCTTCGTCTACAATACAGTGGTAGCTTC
1 GGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
* *
45111163 GGCTAGAATAT-AGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
1 GGCTA-CATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
* *
45111209 GGCTACATCTTAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTC
1 GGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
45111255 GGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
1 GGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
* * ** * *
45111301 GTCTACAAT-ACAGTGGTAGCTTCGGCTACGTTATAGTGATAGCTTT
1 GGCTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
45111347 G
1 G
45111348 ACTATATTAC
Statistics
Matches: 208, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
45 3 0.01
46 200 0.96
47 5 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
GGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
Found at i:45111361 original size:69 final size:69
Alignment explanation
Indices: 45111071--45111329 Score: 362
Period size: 69 Copynumber: 3.8 Consensus size: 69
45111061 GGAATCTATA
* * * * *
45111071 GGCTACATTTCAGTGGTAGCTCCGGCTACAATATAGTGGTAGCTTTGGCTACATCTCAGTGGTAG
1 GGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAG
45111136 CTTC
66 CTTC
* * * *
45111140 GTCTACAATACAGTGGTAGCTTCGGCTAGAATATAGTGGTAGCTTCGGCTACAAT-ACAGTGGTA
1 GGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTAC-ATCTCAGTGGTA
*
45111204 GCTTT
65 GCTTC
45111209 GGCTAC-AT-CTTAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGT
1 GGCTACAATAC--AGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGT
45111272 AGCTTC
64 AGCTTC
* *
45111278 GGCTACAATACAGTGGTAGCTTTGTCTACAATACAGTGGTAGCTTCGGCTAC
1 GGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTAC
45111330 GTTATAGTGA
Statistics
Matches: 169, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
67 1 0.01
68 4 0.02
69 159 0.94
70 4 0.02
71 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (69 bp):
GGCTACAATACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAG
CTTC
Found at i:45118544 original size:43 final size:43
Alignment explanation
Indices: 45118483--45118575 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
45118473 AGCTACAAGG
** * *
45118483 GACACACAGTCGTGTCACCTGGCCGTGTGTCACACACGGTTGA
1 GACACACAGTCGTGTCACCCAGCCGTGTATCACACACGGCTGA
*
45118526 GACACACAG-CTGTGTCACCCAGTCGTGTATCACACACGGCTGA
1 GACACACAGTC-GTGTCACCCAGCCGTGTATCACACACGGCTGA
45118569 GACACAC
1 GACACAC
45118576 GCTCATGTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.02
43 43 0.98
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (43 bp):
GACACACAGTCGTGTCACCCAGCCGTGTATCACACACGGCTGA
Found at i:45119259 original size:24 final size:24
Alignment explanation
Indices: 45119227--45119297 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
45119217 CTGTCAGGAG
45119227 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
45119251 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
45119275 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
45119298 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:45119309 original size:48 final size:48
Alignment explanation
Indices: 45119227--45119320 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
45119217 CTGTCAGGAG
** * *
45119227 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
45119275 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
45119321 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:45120709 original size:27 final size:27
Alignment explanation
Indices: 45120669--45120780 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
45120659 AGGAAGCATC
* *
45120669 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
45120696 CTGGTGGCTCTGCCATATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* * *
45120723 ATGGTGGCTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
45120751 CTAGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
45120777 CTGG
1 CTGG
45120781 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
26 7 0.11
27 43 0.65
28 16 0.24
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:45120775 original size:54 final size:54
Alignment explanation
Indices: 45120670--45120776 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
45120660 GGAAGCATCC
* * * *
45120670 TGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCATATATTTCTGTTA
1 TGGTGGCTATGCCACAATTATTTGATCTAGTGACTCTGCCACATATATCTGTTA
* * *
45120724 TGGTGGCTCTGCCACGATTATTTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 TGGTGGCTATGCCACAATTATTTG-ATCTAGTGACTCTGCCACATATATCTGTT
45120777 CTGGCAGCCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 29 0.64
55 16 0.36
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATTTGATCTAGTGACTCTGCCACATATATCTGTTA
Found at i:45130835 original size:24 final size:24
Alignment explanation
Indices: 45130759--45130838 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
45130749 TCCTATATAT
*
45130759 GTATGCTCACACGAGCTGTAAATCG
1 GTATGCTCTCACGAGCTGT-AATCG
* * * **
45130784 GTATGCTCTCATGGGCTATACCCG
1 GTATGCTCTCACGAGCTGTAATCG
*
45130808 GTATGCTCTCACGAGCTGTAATCA
1 GTATGCTCTCACGAGCTGTAATCG
45130832 GTATGCT
1 GTATGCT
45130839 TTCATGAGTT
Statistics
Matches: 43, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
24 28 0.65
25 15 0.35
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (24 bp):
GTATGCTCTCACGAGCTGTAATCG
Found at i:45144795 original size:16 final size:16
Alignment explanation
Indices: 45144774--45144837 Score: 83
Period size: 16 Copynumber: 4.0 Consensus size: 16
45144764 GTTTGGTTCA
*
45144774 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
45144790 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* * *
45144806 CTGTGATGAAACAGAG
1 CTGTAATGGAATAGAG
45144822 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
45144838 TTATAATCAG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.25
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:45145104 original size:58 final size:58
Alignment explanation
Indices: 45145025--45145148 Score: 187
Period size: 58 Copynumber: 2.1 Consensus size: 58
45145015 TTTTAATAAG
* *
45145025 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAACAATTTAATAATATTCTTAACATA
* * *
45145083 ATTATTATTAAATATAATTTAATAAAATAATATACAATTTAATAATATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
45145141 ATTATTAT
1 ATTATTAT
45145149 ATGAATTAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 23 0.38
58 37 0.62
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
Found at i:45148649 original size:39 final size:39
Alignment explanation
Indices: 45148537--45148730 Score: 271
Period size: 39 Copynumber: 4.9 Consensus size: 39
45148527 TCGTTCAAAC
* * * * * *
45148537 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
45148577 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
* * *
45148617 GCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
45148656 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
45148695 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
45148731 TTCATACACA
Statistics
Matches: 139, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 42 0.30
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:45152176 original size:17 final size:18
Alignment explanation
Indices: 45152154--45152187 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45152144 TAACTAGACC
45152154 AATGATG-GGTTTGTTCA
1 AATGATGTGGTTTGTTCA
*
45152171 AATGATGTGTTTTGTTC
1 AATGATGTGGTTTGTTC
45152188 CATATGTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.06, G:0.26, T:0.47
Consensus pattern (18 bp):
AATGATGTGGTTTGTTCA
Found at i:45154866 original size:21 final size:21
Alignment explanation
Indices: 45154840--45154880 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
45154830 ATCTGCTCAA
* *
45154840 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
45154861 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
45154881 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:45171081 original size:17 final size:17
Alignment explanation
Indices: 45171059--45171091 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45171049 TTAATTTGAG
45171059 ATATATCAATAAAAATC
1 ATATATCAATAAAAATC
*
45171076 ATATATCAATCAAAAT
1 ATATATCAATAAAAAT
45171092 TTATCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (17 bp):
ATATATCAATAAAAATC
Found at i:45181554 original size:12 final size:12
Alignment explanation
Indices: 45181538--45181585 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
45181528 TTTTCTTTTC
45181538 TTTTATGTTTAT
1 TTTTATGTTTAT
*
45181550 GTTTATGTTTAT
1 TTTTATGTTTAT
45181562 TTTTAGTTGTTTTAT
1 TTTTA--TG-TTTAT
45181577 TTTTATGTT
1 TTTTATGTT
45181586 CTTAGACTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 17 0.55
13 2 0.06
14 2 0.06
15 10 0.32
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (12 bp):
TTTTATGTTTAT
Found at i:45183477 original size:30 final size:30
Alignment explanation
Indices: 45183406--45183493 Score: 115
Period size: 30 Copynumber: 2.9 Consensus size: 30
45183396 CTGGGCATTT
*
45183406 CCACAC-GAGCTGGACACATGCACTTGTGTG
1 CCACACAG-GCTGGACACATGCCCTTGTGTG
*
45183436 CCACACGGGCTGGACACATGCCCTTGTGTG
1 CCACACAGGCTGGACACATGCCCTTGTGTG
* * *
45183466 CCACATAGGCTGCACACCTGCCCTTGTG
1 CCACACAGGCTGGACACATGCCCTTGTG
45183494 CCAACCCGTG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
30 51 0.98
31 1 0.02
ACGTcount: A:0.19, C:0.34, G:0.26, T:0.20
Consensus pattern (30 bp):
CCACACAGGCTGGACACATGCCCTTGTGTG
Found at i:45185812 original size:27 final size:27
Alignment explanation
Indices: 45185754--45185811 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
45185744 ATGAATTTTC
*
45185754 TCAAAATTTTA-CTAGGGTTAAAATCT
1 TCAAAATTTTATCTAGGGGTAAAATCT
45185780 TCAAAATTTTATC-AGGGGTAAAAT-T
1 TCAAAATTTTATCTAGGGGTAAAATCT
45185805 GTCAAAA
1 -TCAAAA
45185812 AATTTATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 1 0.03
26 27 0.93
27 1 0.03
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.34
Consensus pattern (27 bp):
TCAAAATTTTATCTAGGGGTAAAATCT
Found at i:45197480 original size:24 final size:24
Alignment explanation
Indices: 45197453--45197515 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
45197443 CTTATTATGT
*
45197453 TCGCAAACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
45197477 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
45197501 TCGCACACATAGTGC
1 TCGCACACATAGTGC
45197516 ATTTGAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:45201981 original size:39 final size:39
Alignment explanation
Indices: 45201927--45202173 Score: 318
Period size: 39 Copynumber: 6.3 Consensus size: 39
45201917 CTGGACTTTA
* * *
45201927 AGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TT
* * * *
45201966 AGCCCGGATATAATACCAGCA-TAAAGCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TT
* * *
45202005 AGACCGGATAAAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
45202044 AACCCAGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
45202083 AGCCCGGATATAACACCAGCACTAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* * *
45202122 AGCCCAGATATAACCCCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
45202161 AGCCCGGATATAA
1 AGCCCGGATATAA
45202174 TTCTCCATTA
Statistics
Matches: 186, Mismatches: 20, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
39 175 0.94
40 11 0.06
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.18
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:45202707 original size:110 final size:110
Alignment explanation
Indices: 45202514--45202733 Score: 395
Period size: 110 Copynumber: 2.0 Consensus size: 110
45202504 TGTGGATAGG
* *
45202514 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCACTTTACTCTTGAGCTTTAAATT
*
45202579 TAAACAAATGAATTTGTTTAGTTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
* *
45202624 CTACTCGATTGTTTTCTCCTTTTCCCTATCTGATTTAGTTCCACTTTACTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCACTTTACTCTTGAGCTTTAAATT
45202689 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
45202734 AATAGTCACA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
110 105 1.00
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.47
Consensus pattern (110 bp):
CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCACTTTACTCTTGAGCTTTAAATT
TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
Found at i:45220079 original size:77 final size:79
Alignment explanation
Indices: 45219888--45220143 Score: 301
Period size: 77 Copynumber: 3.3 Consensus size: 79
45219878 ACAAAGCATG
* * * *
45219888 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAATA
1 CGGGACTTT-AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACA
* *
45219952 CCAGCAC-AAAGCCTG
64 CCAGCACGAATGCCTT
* *
45219967 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGAGG-CTT-GACCCAGACATAACA
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCG-GGACTTAG-CCCGGATATAACA
*
45220030 CCAGCGCGAATGCCTT
64 CCAGCACGAATGCCTT
45220046 CGGGAC-TTAGCCCGGAT-TAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
* *
45220109 AGTACGAATACCTT
66 AGCACGAATGCCTT
** *
45220123 CAAGAC-TTATCCCGGATATAA
1 CGGGACTTTAGCCCGGATATAA
45220144 TTCTCCATTA
Statistics
Matches: 153, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
76 2 0.01
77 65 0.42
78 54 0.35
79 30 0.20
80 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (79 bp):
CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
AGCACGAATGCCTT
Found at i:45220117 original size:39 final size:39
Alignment explanation
Indices: 45219888--45220143 Score: 297
Period size: 39 Copynumber: 6.5 Consensus size: 39
45219878 ACAAAGCATG
* * *
45219888 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* * *
45219928 CGGGACTTTAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
45219967 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
45220007 CGAGG-CTT-GACCCAGACATAACACCAGCGCGAATGCCTT
1 CG-GGACTTAG-CCCGGATATAACACCAGCACGAATGCCTT
45220046 CGGGACTTAGCCCGGAT-TAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
45220084 CGGGACTTAGCCCGGATATAACACCAGTACGAATACCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
** *
45220123 CAAGACTTATCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
45220144 TTCTCCATTA
Statistics
Matches: 196, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
38 40 0.20
39 135 0.69
40 19 0.10
41 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:45220671 original size:110 final size:110
Alignment explanation
Indices: 45220478--45220697 Score: 395
Period size: 110 Copynumber: 2.0 Consensus size: 110
45220468 TGTGGATAGG
* *
45220478 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCACTTTACTCTTGAGCTTTAAATT
*
45220543 TAAACAAATGAATTTGTTTAGTTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
* *
45220588 CTACTCGATTGTTTTCTCCTTTTCCCTATCTGATTTAGTTCCACTTTACTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCACTTTACTCTTGAGCTTTAAATT
45220653 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
45220698 AATAGTCACA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
110 105 1.00
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.47
Consensus pattern (110 bp):
CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCACTTTACTCTTGAGCTTTAAATT
TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
Found at i:45234264 original size:24 final size:24
Alignment explanation
Indices: 45234232--45234286 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
45234222 AGTTAACTTT
*
45234232 TCTTGTTAATATGTTTCTTTCTAG
1 TCTTATTAATATGTTTCTTTCTAG
45234256 TCTTATTAATATGTTTCTTTCTAG
1 TCTTATTAATATGTTTCTTTCTAG
45234280 TCTTATT
1 TCTTATT
45234287 GGTCATTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.18, C:0.13, G:0.09, T:0.60
Consensus pattern (24 bp):
TCTTATTAATATGTTTCTTTCTAG
Found at i:45234358 original size:3 final size:3
Alignment explanation
Indices: 45234352--45234400 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
45234342 TCCTCATTCA
45234352 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
45234400 A
1 A
45234401 AGATTTTCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:45238776 original size:37 final size:36
Alignment explanation
Indices: 45238726--45238812 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
45238716 TACGAAGTCT
45238726 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
45238762 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
45238799 TCACCCGGAACATA
1 T-ACCCGG-ACATA
45238813 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:45238950 original size:49 final size:49
Alignment explanation
Indices: 45238881--45239094 Score: 338
Period size: 49 Copynumber: 4.4 Consensus size: 49
45238871 TTTACCACAT
* *
45238881 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
45238930 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
45238979 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
45239028 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
45239077 ATATATATACATTTTCAC
1 ATATACATACATTTTCAC
45239095 GAATCTTGAT
Statistics
Matches: 156, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 156 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:45242575 original size:24 final size:24
Alignment explanation
Indices: 45242543--45242725 Score: 285
Period size: 24 Copynumber: 7.6 Consensus size: 24
45242533 TATCTCAAAT
45242543 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
45242567 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
45242591 GCACTATGTGTGTGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
45242615 GCACTATGTGTGCAATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
45242639 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
45242663 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
45242687 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
45242711 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
45242726 ACATAATAAG
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 150 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:45242738 original size:48 final size:49
Alignment explanation
Indices: 45242543--45242747 Score: 222
Period size: 48 Copynumber: 4.3 Consensus size: 49
45242533 TATCTCAAAT
* * *
45242543 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-A-TTCACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACAT-AATATA
* * ** * *
45242591 GCACTATGTGTGTGATTCACTATGGCACTATGTGTGC-AATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATATA
** **
45242639 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTGCTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATATA
* * *
45242687 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATATA
45242735 GCACTATGTGTGC
1 GCACTATGTGTGC
45242748 CACATTCGGT
Statistics
Matches: 140, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
48 134 0.96
49 6 0.04
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (49 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATATA
Found at i:45242739 original size:72 final size:72
Alignment explanation
Indices: 45242543--45242747 Score: 245
Period size: 72 Copynumber: 2.8 Consensus size: 72
45242533 TATCTCAAAT
* *
45242543 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACT-AT-GGCACTATGTGTGTGA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATAGGCACTATGTGTGCGA
*
45242606 TTCACTATG
64 TTCACTATA
* ** *
45242615 GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCG-ATTTACTATGGCACTATGTGTGCGAT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-GGCACTATGTGTGCGAT
**
45242679 TTGCTATA
65 TCACTATA
* * * *
45242687 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATAAGCACTATGTGTGC
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAGGCACTATGTGTGC
45242748 CACATTCGGT
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
69 1 0.01
70 1 0.01
72 105 0.94
73 5 0.04
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (72 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAGGCACTATGTGTGCGATT
CACTATA
Found at i:45245106 original size:40 final size:40
Alignment explanation
Indices: 45244910--45245093 Score: 316
Period size: 40 Copynumber: 4.6 Consensus size: 40
45244900 CCAGCATGAT
* * * *
45244910 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
45244950 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
45244990 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
45245030 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
45245070 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
45245094 TAACCACAAG
Statistics
Matches: 138, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 7 0.05
40 131 0.95
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:45245106 original size:80 final size:80
Alignment explanation
Indices: 45244942--45245118 Score: 279
Period size: 80 Copynumber: 2.2 Consensus size: 80
45244932 ATGCATCACT
45244942 AGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAG
1 AGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAG
* * *
45245007 TCCGGATACATCACT
66 TCCGGATAAACCACA
*
45245022 AGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
1 AGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAG
45245087 -CCGGATATAACCACA
66 TCCGGATA-AACCACA
45245102 AGCAC-AATTGC-CTTCGG
1 AGCACGAA-TGCTCTTCGG
45245119 GTCTTAACCC
Statistics
Matches: 91, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
79 15 0.16
80 76 0.84
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (80 bp):
AGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAG
TCCGGATAAACCACA
Found at i:45245136 original size:40 final size:40
Alignment explanation
Indices: 45245022--45245210 Score: 150
Period size: 40 Copynumber: 4.7 Consensus size: 40
45245012 ATACATCACT
* ** * * * *
45245022 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* **
45245062 AGCACGAATGCTCTTCGGAACTTAG-CCGGATATAACCACA
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* * * * *
45245102 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCAC-A
** *
45245143 A-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
* *
45245182 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
45245211 GTATCATTCA
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 18 0.14
40 106 0.85
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
Found at i:45245152 original size:120 final size:119
Alignment explanation
Indices: 45244910--45245207 Score: 318
Period size: 120 Copynumber: 2.5 Consensus size: 119
45244900 CCAGCATGAT
* *
45244910 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATA
* * * ** * *
45244975 CATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
65 AACCACAAGCACGAATGCTCCTCGGAACTTAACCCGGATACAACACTAGCACAAA
* *
45245030 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATA-
* ** * *
45245095 AACCACAAGCAC-AATTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
65 AACCACAAGCACGAA-TGCTCCTCGGAACTTAACCCGGATACAAC-ACT-AGCACAAA
* * ** *
45245150 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAATGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGAACTTAGCC
45245208 CGGGTATCAT
Statistics
Matches: 150, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
119 59 0.39
120 90 0.60
121 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATAA
ACCACAAGCACGAATGCTCCTCGGAACTTAACCCGGATACAACACTAGCACAAA
Found at i:45247118 original size:37 final size:36
Alignment explanation
Indices: 45247068--45247154 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
45247058 TACGAAGTCT
45247068 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
45247104 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
45247141 TCACCCGGAACATA
1 T-ACCCGG-ACATA
45247155 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:45247292 original size:49 final size:49
Alignment explanation
Indices: 45247223--45247484 Score: 418
Period size: 49 Copynumber: 5.4 Consensus size: 49
45247213 TTTACCACAT
*
45247223 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
45247272 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
45247321 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
45247370 ATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTA-CAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
45247418 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
45247467 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
45247485 GAATCTTGAT
Statistics
Matches: 201, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
48 43 0.21
49 158 0.79
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:45255302 original size:25 final size:25
Alignment explanation
Indices: 45255268--45255320 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
45255258 GTGTATGCTA
*
45255268 CATTGAGATTGTTAAGTAAAGAAAC
1 CATTGAGATTGTCAAGTAAAGAAAC
45255293 CATTGAGATTGTCAAGTAAAGAAAC
1 CATTGAGATTGTCAAGTAAAGAAAC
45255318 CAT
1 CAT
45255321 GTGACAAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.26
Consensus pattern (25 bp):
CATTGAGATTGTCAAGTAAAGAAAC
Found at i:45270845 original size:24 final size:25
Alignment explanation
Indices: 45270818--45270869 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
45270808 GCCTAGCCTC
45270818 TTTTAATAA-CTAGGGCAAAGCCCT
1 TTTTAATAACCTAGGGCAAAGCCCT
** *
45270842 TTTTGGTAACCTGGGGCAAAGCCCT
1 TTTTAATAACCTAGGGCAAAGCCCT
45270867 TTT
1 TTT
45270870 CGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAACCTAGGGCAAAGCCCT
Found at i:45271129 original size:27 final size:27
Alignment explanation
Indices: 45271074--45271403 Score: 394
Period size: 27 Copynumber: 12.2 Consensus size: 27
45271064 AGGCAGAATG
* * * * * *
45271074 GTAATTTTACCCCACAAGGTTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
45271101 GTAATTCTACCCTACAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * ** *
45271128 GTATTTCTACCGTACAAAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45271155 GCAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45271182 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
45271209 GTAATTCTACCTTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45271236 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
45271263 GTAATTCTACCTTATAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
45271290 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
45271316 GATAATTCTACCTTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
45271344 GTAATTCTACCCTACATGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
45271371 GTAATTCTACCCTATAGGGGTATTTTC-
1 GTAATTCTACCCTACAGGGGTA-TTTCA
45271398 GTAATT
1 GTAATT
45271404 TTACAAACCA
Statistics
Matches: 261, Mismatches: 39, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.00
27 255 0.98
28 5 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:45271418 original size:27 final size:26
Alignment explanation
Indices: 45271388--45271455 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 26
45271378 TACCCTATAG
*
45271388 GGGTATTTTCGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAA
*
45271415 GGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAACAA
45271441 GAGGTATTTTGGTAA
1 G-GGTATTTTGGTAA
45271456 CTTTGGTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 3 0.08
27 35 0.92
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAA
Found at i:45271447 original size:81 final size:79
Alignment explanation
Indices: 45271157--45271449 Score: 295
Period size: 81 Copynumber: 3.6 Consensus size: 79
45271147 GTATTTCGGC
* * * * *
45271157 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCTT
1 AATTCTACCATACAGGGGTATTTCGGTAATTCTACAC--TAGAGGTATTTCAGTAATTCTACCCT
*
45271222 ATAGGGGTATTTTAGT
64 ATAGGGGTATTTTCGT
* *
45271238 AATTCTACCCTACAGGGGTATTTCGGTAATTCTAC-CTTATAGGAGTATTTCAGTAATTCTACCC
1 AATTCTACCATACAGGGGTATTTCGGTAATTCTACAC-TAGA-G-GTATTTCAGTAATTCTACCC
*
45271302 TACAGGGGTA-TTTCGAT
63 TATAGGGGTATTTTCG-T
* * * * *
45271319 AATTCTACCTTATAGGGGTATTTCAGTAATTCTACCCTACATGGGTATTTCAGTAATTCTACCCT
1 AATTCTACCATACAGGGGTATTTCGGTAATTCTACACTAGA--GGTATTTCAGTAATTCTACCCT
45271384 ATAGGGGTATTTTCGT
64 ATAGGGGTATTTTCGT
* * * * *
45271400 AATTTTA-CAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTT
1 AATTCTACCATA-CAGGGGTATTTCGGTAATTCTAC--ACTAGAGGTATTT
45271450 TGGTAACTTT
Statistics
Matches: 181, Mismatches: 22, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
79 2 0.01
80 8 0.04
81 159 0.88
82 8 0.04
83 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (79 bp):
AATTCTACCATACAGGGGTATTTCGGTAATTCTACACTAGAGGTATTTCAGTAATTCTACCCTAT
AGGGGTATTTTCGT
Found at i:45276708 original size:11 final size:11
Alignment explanation
Indices: 45276694--45276743 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
45276684 TAATTAGATA
*
45276694 ATTATTATTTT
1 ATTAATATTTT
45276705 ATTAATATTTT
1 ATTAATATTTT
*
45276716 AATAAGATATTTT
1 -ATTA-ATATTTT
*
45276729 ATTATTATTTT
1 ATTAATATTTT
45276740 ATTA
1 ATTA
45276744 GTATATAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 20 0.61
12 6 0.18
13 7 0.21
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
ATTAATATTTT
Found at i:45278514 original size:200 final size:200
Alignment explanation
Indices: 45278171--45278573 Score: 761
Period size: 200 Copynumber: 2.0 Consensus size: 200
45278161 GTTGAAATTT
*
45278171 CATGATTATTTGTTAAATTAGGAATGATATAATGTATTATTTCATATGTTTGCAATTGAATTATG
1 CATGATTATTTGTTAAATTAGGAATGATATAATGTATTACTTCATATGTTTGCAATTGAATTATG
45278236 AATATTTTTAAATTATGGAAATCGGATCAAAAGTTCAAATTGAGAAGAACGCTGAATTGAATATG
66 AATATTTTTAAATTATGGAAATCGGATCAAAAGTTCAAATTGAGAAGAACGCTGAATTGAATATG
45278301 ATCGTTTAGTGATCAGTGATGAATTGACAGATAAGACCATGGCTGGGTCATGGAAATATATGTGT
131 ATCGTTTAGTGATCAGTGATGAATTGACAGATAAGACCATGGCTGGGTCATGGAAATATATGTGT
45278366 AAGAC
196 AAGAC
45278371 CATGATTATTTGTTAAATTAGGAATGATATAATGTATTACTTCATATGTTTGCAATTGAATTATG
1 CATGATTATTTGTTAAATTAGGAATGATATAATGTATTACTTCATATGTTTGCAATTGAATTATG
* * *
45278436 AATATTTTTAAATTATGGAAATCGTATCAAAAGTTCAAATTGAGCAGAACGTTGAATTGAATATG
66 AATATTTTTAAATTATGGAAATCGGATCAAAAGTTCAAATTGAGAAGAACGCTGAATTGAATATG
*
45278501 ATCGTTTAGTGATCAGTGATGAATTGACAGATAAGACCATGGCTGGGTCATGGCAATATATGTGT
131 ATCGTTTAGTGATCAGTGATGAATTGACAGATAAGACCATGGCTGGGTCATGGAAATATATGTGT
45278566 AAGAC
196 AAGAC
45278571 CAT
1 CAT
45278574 AGCTAGTTAT
Statistics
Matches: 198, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
200 198 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (200 bp):
CATGATTATTTGTTAAATTAGGAATGATATAATGTATTACTTCATATGTTTGCAATTGAATTATG
AATATTTTTAAATTATGGAAATCGGATCAAAAGTTCAAATTGAGAAGAACGCTGAATTGAATATG
ATCGTTTAGTGATCAGTGATGAATTGACAGATAAGACCATGGCTGGGTCATGGAAATATATGTGT
AAGAC
Found at i:45278746 original size:45 final size:45
Alignment explanation
Indices: 45278697--45278820 Score: 162
Period size: 45 Copynumber: 2.8 Consensus size: 45
45278687 CATACCATAA
* *
45278697 ACGAGTAAGACCATAGTTAAAAGACACTATGGCATTGA-GATTCAG
1 ACGAGTAAGACCATAGTTGAAAGACACTATGGCA-TCACGATTCAG
**
45278742 ACGAGTAAGACCATAGTTGAAAGACGTTATGGCATCACGATTCAG
1 ACGAGTAAGACCATAGTTGAAAGACACTATGGCATCACGATTCAG
* *
45278787 A-TATGTAAGACCATAGTTGAAAGATACTATGGCA
1 ACGA-GTAAGACCATAGTTGAAAGACACTATGGCA
45278821 ATGTGACGAG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
44 3 0.04
45 66 0.96
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (45 bp):
ACGAGTAAGACCATAGTTGAAAGACACTATGGCATCACGATTCAG
Found at i:45278904 original size:45 final size:46
Alignment explanation
Indices: 45278792--45278949 Score: 248
Period size: 46 Copynumber: 3.5 Consensus size: 46
45278782 TTCAGATATG
* * **
45278792 TAAGACCATAGTTGAAAGATACTATGGCAATGTGAC-GAGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA-AAATGAA
45278838 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
*
45278884 TAAGACCATGGTTG-AAGATACCATGGCAACATGACAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
45278929 TAAGACCATGGTTGAAAGATA
1 TAAGACCATGGTTGAAAGATA
45278950 GAAATGAATA
Statistics
Matches: 105, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
45 44 0.42
46 59 0.56
47 2 0.02
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA
Found at i:45278953 original size:29 final size:29
Alignment explanation
Indices: 45278921--45278976 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
45278911 AACATGACAG
*
45278921 GAAATGAATAAGACCATGGTTGAAAGATA
1 GAAATGAATAAGACCATAGTTGAAAGATA
* *
45278950 GAAATGAATAATACCATAGTTGGAAGA
1 GAAATGAATAAGACCATAGTTGAAAGA
45278977 CACTATGGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.48, C:0.07, G:0.23, T:0.21
Consensus pattern (29 bp):
GAAATGAATAAGACCATAGTTGAAAGATA
Found at i:45285778 original size:12 final size:13
Alignment explanation
Indices: 45285750--45285782 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
45285740 TTATTTCTTT
45285750 TTCTCCATCTACC
1 TTCTCCATCTACC
*
45285763 TTCTCC-TCTTCC
1 TTCTCCATCTACC
45285775 TTCTCCAT
1 TTCTCCAT
45285783 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:45286879 original size:28 final size:28
Alignment explanation
Indices: 45286847--45286910 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
45286837 ATTTACTAGA
* *
45286847 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGAACATT
* *
45286875 ATA-CCCTATGTGTGCAAAATGAACTTT
1 ATACCCCTATGTATGCAAAATGAACATT
45286902 ATACCCCTA
1 ATACCCCTA
45286911 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 23 0.74
28 8 0.26
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGAACATT
Found at i:45287057 original size:28 final size:27
Alignment explanation
Indices: 45287016--45287116 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
45287006 AGGAAGCGTC
* *
45287016 CTGGTGGCTATGCCATAAATTATCTGTT
1 CTGGTGGCTCTGCCACAAA-TATCTGTT
**
45287044 CTGGTGGCTCTGCCACGTATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGTT
*
45287071 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-AAATATCTGT-T
* *
45287100 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
45287117 TTTTCTGTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
27 23 0.38
28 24 0.39
29 14 0.23
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGTT
Found at i:45287116 original size:29 final size:28
Alignment explanation
Indices: 45287016--45287116 Score: 114
Period size: 27 Copynumber: 3.6 Consensus size: 28
45287006 AGGAAGCGTC
* * *
45287016 CTGGTGGCTATGCCATAAATTATCTGTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
**
45287044 CTGGTGGCTCTGCCAC-GTATATCTGTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
*
45287071 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCACAAAATATCTGT-T
* *
45287100 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
45287117 TTTTCTGTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 23 0.38
28 22 0.37
29 15 0.25
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.34
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAAATATCTGTT
Found at i:45287124 original size:55 final size:56
Alignment explanation
Indices: 45287016--45287130 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
45287006 AGGAAGCGTC
* * * *
45287016 CTGGTGGCTATGCCATAAATTATCTGTTCTGGTGGCTCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACTCTGCCACATATATCTGTAT
* *
45287071 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACTCTGCCACATATATCTGTAT
45287127 CTGG
1 CTGG
45287131 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACTCTGCCACATATATCTGTAT
Found at i:45288201 original size:11 final size:10
Alignment explanation
Indices: 45288173--45288206 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
45288163 AGCCTGTAAG
45288173 TATTCTGAAT
1 TATTCTGAAT
*
45288183 TTTTCTGAAT
1 TATTCTGAAT
45288193 ATATTCTGAAT
1 -TATTCTGAAT
45288204 TAT
1 TAT
45288207 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:45293545 original size:12 final size:13
Alignment explanation
Indices: 45293517--45293549 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
45293507 TTATTTCTTT
45293517 TTCTCCATCTACC
1 TTCTCCATCTACC
*
45293530 TTCTCC-TCTTCC
1 TTCTCCATCTACC
45293542 TTCTCCAT
1 TTCTCCAT
45293550 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:45294351 original size:8 final size:8
Alignment explanation
Indices: 45294338--45294369 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
45294328 CTAGATCGGC
45294338 AAAAGCCG
1 AAAAGCCG
45294346 AAAAGCCG
1 AAAAGCCG
*
45294354 AAATGCCG
1 AAAAGCCG
45294362 AAAAGCCG
1 AAAAGCCG
45294370 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:45294648 original size:28 final size:28
Alignment explanation
Indices: 45294616--45294679 Score: 94
Period size: 27 Copynumber: 2.3 Consensus size: 28
45294606 ATTTACTAGA
*
45294616 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
45294644 ATA-CCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
45294671 ATACCCCTA
1 ATACCCCTA
45294680 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 24 0.75
28 8 0.25
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:45294843 original size:27 final size:27
Alignment explanation
Indices: 45294785--45294885 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 27
45294775 AGGAAGCGTC
*
45294785 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCTCTGCCACAAA-TATCTGTT
**
45294813 CTGGTGGCTCTGCCACGTATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGTT
*
45294840 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-AAATATCTGT-T
* *
45294869 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
45294886 TTTTCTGTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.37
28 25 0.40
29 14 0.23
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGTT
Found at i:45294885 original size:29 final size:28
Alignment explanation
Indices: 45294785--45294885 Score: 123
Period size: 27 Copynumber: 3.6 Consensus size: 28
45294775 AGGAAGCGTC
* *
45294785 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
**
45294813 CTGGTGGCTCTGCCAC-GTATATCTGTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
*
45294840 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCACAAAATATCTGT-T
* *
45294869 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
45294886 TTTTCTGTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 23 0.38
28 23 0.38
29 15 0.25
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAAATATCTGTT
Found at i:45294893 original size:55 final size:56
Alignment explanation
Indices: 45294785--45294899 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
45294775 AGGAAGCGTC
* * *
45294785 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCTCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACTCTGCCACATATATCTGTAT
* *
45294840 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACTCTGCCACATATATCTGTAT
45294896 CTGG
1 CTGG
45294900 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACTCTGCCACATATATCTGTAT
Found at i:45300735 original size:14 final size:15
Alignment explanation
Indices: 45300711--45300740 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45300701 TTTAGTGATA
45300711 TAAACAAAATTAAAT
1 TAAACAAAATTAAAT
45300726 TAAA-AAAATTAAAT
1 TAAACAAAATTAAAT
45300740 T
1 T
45300741 GCAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAACAAAATTAAAT
Found at i:45301051 original size:13 final size:13
Alignment explanation
Indices: 45301035--45301059 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45301025 TAACTAAACT
45301035 AAGGAAGAATCCC
1 AAGGAAGAATCCC
45301048 AAGGAAGAATCC
1 AAGGAAGAATCC
45301060 ACCTAGACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.24, T:0.08
Consensus pattern (13 bp):
AAGGAAGAATCCC
Found at i:45304727 original size:29 final size:29
Alignment explanation
Indices: 45304669--45304783 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
45304659 TACCTGTATC
* * *
45304669 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* *
45304697 TGGCCCATTAGACCCACATCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-TATA
45304726 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* *
45304755 TGGCCCATTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
45304783 T
1 T
45304784 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.61
30 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:45309175 original size:57 final size:58
Alignment explanation
Indices: 45309111--45309219 Score: 175
Period size: 58 Copynumber: 1.9 Consensus size: 58
45309101 AATTTCACAT
*
45309111 ACCTGTATCTGGCCCATTAAACCC-AATCATATTCATATGGCCCATTAGGCCTAAATC
1 ACCTGTATATGGCCCATTAAACCCAAATCATATTCATATGGCCCATTAGGCCTAAATC
** *
45309168 ACCTGTATATGGCCCATTAGGCCCAAATCATATTTATATGGCCCATTAGGCC
1 ACCTGTATATGGCCCATTAAACCCAAATCATATTCATATGGCCCATTAGGCC
45309220 CAGTCATATT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAACCCAAATCATATTCATATGGCCCATTAGGCCTAAATC
Found at i:45309177 original size:29 final size:29
Alignment explanation
Indices: 45309114--45309221 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
45309104 TTCACATACC
* ** *
45309114 TGTATCTGGCCCATTAAACCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
45309142 T-TCATATGGCCCATTAGGCCTAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
45309171 TGTATATGGCCCATTAGGCCCAAATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
45309200 TTTATATGGCCCATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
45309222 GTCATATTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 15 0.22
29 50 0.75
30 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:45316669 original size:15 final size:16
Alignment explanation
Indices: 45316651--45316680 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45316641 TAATTTAATA
45316651 TTATAT-CAATTAAAT
1 TTATATACAATTAAAT
45316666 TTATATACAATTAAA
1 TTATATACAATTAAA
45316681 GGAAAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TTATATACAATTAAAT
Found at i:45318233 original size:13 final size:13
Alignment explanation
Indices: 45318217--45318251 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
45318207 TTCCGTGGAA
45318217 AAGTGCTTTTAAG
1 AAGTGCTTTTAAG
* *
45318230 AAGTACTTTTGAG
1 AAGTGCTTTTAAG
45318243 AAGTGCTTT
1 AAGTGCTTT
45318252 GGAAAAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (13 bp):
AAGTGCTTTTAAG
Found at i:45323566 original size:30 final size:30
Alignment explanation
Indices: 45323532--45323605 Score: 121
Period size: 30 Copynumber: 2.5 Consensus size: 30
45323522 ACCTAAGGGT
45323532 AAAATGGTCATTTTACAAAAGTCTAGGAGC
1 AAAATGGTCATTTTACAAAAGTCTAGGAGC
** *
45323562 AAAATTTTCATTTTGCAAAAGTCTAGGAGC
1 AAAATGGTCATTTTACAAAAGTCTAGGAGC
45323592 AAAATGGTCATTTT
1 AAAATGGTCATTTT
45323606 TCCCAATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (30 bp):
AAAATGGTCATTTTACAAAAGTCTAGGAGC
Found at i:45324442 original size:45 final size:45
Alignment explanation
Indices: 45324400--45324542 Score: 127
Period size: 45 Copynumber: 3.2 Consensus size: 45
45324390 GAGTTTTGTG
45324400 TCATTTTTAATTGGCCAAATGTGTTGGCTTACTTTAGCTTTTGAT
1 TCATTTTTAATTGGCCAAATGTGTTGGCTTACTTTAGCTTTTGAT
* * * * * *
45324445 T-ATTTTGATTATAG-C--ATGTATAGGACCCTAACTTTTGAG-TTTTG-T
1 TCATTTTTAAT-TGGCCAAATGTGTTGG---CTTAC-TTT-AGCTTTTGAT
45324490 GTCATTTTTAATTGGCCAAATGTGTTGGCTTACTTTAGCTTTTGAT
1 -TCATTTTTAATTGGCCAAATGTGTTGGCTTACTTTAGCTTTTGAT
45324536 TCATTTT
1 TCATTTT
45324543 GTATAAGGCC
Statistics
Matches: 73, Mismatches: 12, Indels: 26
0.66 0.11 0.23
Matches are distributed among these distances:
42 7 0.10
44 10 0.14
45 23 0.32
46 16 0.22
47 10 0.14
49 7 0.10
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (45 bp):
TCATTTTTAATTGGCCAAATGTGTTGGCTTACTTTAGCTTTTGAT
Found at i:45324507 original size:91 final size:91
Alignment explanation
Indices: 45324352--45324543 Score: 375
Period size: 91 Copynumber: 2.1 Consensus size: 91
45324342 AGTTAAATCT
45324352 ATTATTTTGATTATAGCATGTATAGGACCCTAACTTTTGAGTTTTGTGTCATTTTTAATTGGCCA
1 ATTATTTTGATTATAGCATGTATAGGACCCTAACTTTTGAGTTTTGTGTCATTTTTAATTGGCCA
45324417 AATGTGTTGGCTTACTTTAGCTTTTG
66 AATGTGTTGGCTTACTTTAGCTTTTG
45324443 ATTATTTTGATTATAGCATGTATAGGACCCTAACTTTTGAGTTTTGTGTCATTTTTAATTGGCCA
1 ATTATTTTGATTATAGCATGTATAGGACCCTAACTTTTGAGTTTTGTGTCATTTTTAATTGGCCA
45324508 AATGTGTTGGCTTACTTTAGCTTTTG
66 AATGTGTTGGCTTACTTTAGCTTTTG
45324534 ATTCATTTTG
1 ATT-ATTTTG
45324544 TATAAGGCCA
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
91 94 0.94
92 6 0.06
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.48
Consensus pattern (91 bp):
ATTATTTTGATTATAGCATGTATAGGACCCTAACTTTTGAGTTTTGTGTCATTTTTAATTGGCCA
AATGTGTTGGCTTACTTTAGCTTTTG
Found at i:45324525 original size:46 final size:46
Alignment explanation
Indices: 45324384--45324525 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 46
45324374 TAGGACCCTA
45324384 ACTTTTGAGTTTTGTGTCATTTTTAATTGGCCAAATGTGTTGGCTT
1 ACTTTTGAGTTTTGTGTCATTTTTAATTGGCCAAATGTGTTGGCTT
* * * * * *
45324430 AC-TTT-AGCTTTTGAT-T-ATTTTGATTATAG-C--ATGTATAGGACCCTA
1 ACTTTTGAG-TTTTG-TGTCATTTTTAAT-TGGCCAAATGTGTTGG---CTT
45324475 ACTTTTGAGTTTTGTGTCATTTTTAATTGGCCAAATGTGTTGGCTT
1 ACTTTTGAGTTTTGTGTCATTTTTAATTGGCCAAATGTGTTGGCTT
45324521 ACTTT
1 ACTTT
45324526 AGCTTTTGAT
Statistics
Matches: 71, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 7 0.10
44 10 0.14
45 16 0.23
46 21 0.30
47 10 0.14
49 7 0.10
ACGTcount: A:0.20, C:0.12, G:0.19, T:0.49
Consensus pattern (46 bp):
ACTTTTGAGTTTTGTGTCATTTTTAATTGGCCAAATGTGTTGGCTT
Found at i:45331601 original size:31 final size:31
Alignment explanation
Indices: 45331563--45331621 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
45331553 AAGTAGCCGA
45331563 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
45331594 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
45331622 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:45331605 original size:46 final size:46
Alignment explanation
Indices: 45331517--45331608 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
45331507 CACTATTCAC
* * *
45331517 TGATCAGGTAGCCGGAGCTACCATTTTTCCCTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
45331563 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
45331609 AGCTACCACT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:45331700 original size:50 final size:50
Alignment explanation
Indices: 45331601--45331827 Score: 355
Period size: 50 Copynumber: 4.5 Consensus size: 50
45331591 CATTGATCAG
* * * * *
45331601 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCGTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAAATAAGT
* *
45331652 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAAATAAGT
45331702 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAAATAAGT
* * *
45331752 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAAATAAGT
45331802 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
45331828 GTTGCCATGG
Statistics
Matches: 164, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
50 142 0.87
51 22 0.13
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAAATAAGT
Found at i:45336423 original size:31 final size:31
Alignment explanation
Indices: 45336388--45336454 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
45336378 CTTGTCACTT
* * *
45336388 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * *
45336419 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
45336450 GTAGC
1 GTAGC
45336455 GGATGATCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:45336500 original size:31 final size:31
Alignment explanation
Indices: 45336458--45336516 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
45336448 AAGTAGCGGA
*
45336458 TGATCAAGTAGCCGAAGCTACTACTTTTCAT
1 TGATCAAGTAGCCGAAGCTACCACTTTTCAT
*
45336489 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAAGTAGCCGAAGCTACCACTTTT
45336517 TACTTGCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (31 bp):
TGATCAAGTAGCCGAAGCTACCACTTTTCAT
Found at i:45336595 original size:50 final size:50
Alignment explanation
Indices: 45336496--45336772 Score: 455
Period size: 50 Copynumber: 5.5 Consensus size: 50
45336486 CATTGATCAG
* * * * *
45336496 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
45336547 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCATATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
45336597 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCATATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
45336647 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
45336697 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
45336747 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
45336773 GTTGCCATAG
Statistics
Matches: 215, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
50 193 0.90
51 22 0.10
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:45337064 original size:21 final size:22
Alignment explanation
Indices: 45337024--45337064 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
45337014 TTCCAAATAA
* *
45337024 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
45337046 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
45337065 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:45339509 original size:47 final size:46
Alignment explanation
Indices: 45339441--45339752 Score: 180
Period size: 47 Copynumber: 6.7 Consensus size: 46
45339431 TTTGTGTGCT
45339441 AGTGTAAGA-CATGTTTGGGACAT-GCATCGACCACGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCG-CCAC-TTATGAGAGCC
* * * **
45339487 AGTGTAAGACCATGTCTGGGACATAGCATCGGCA-TTGATAAGAGAGGT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGCCACTT-AT--GAGAGCC
* * * *
45339535 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCTTGATCTA-AGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATC-GCCACTT-AT-GAGAGCC
* * ** * * *
45339581 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGTTAC--AAGATGTGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATC-GCCACTTATGA-GAGCC
* * * * *
45339625 AGTATAAGACCATGTTTGGGACATGGCATCGGCACGGATACGTGGGAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGCCAC--TTA--TGAGAGCC
* *
45339675 AGTGTAAGACCATGTTTGGGACATGGCAT--CAACTTAACGGGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGCCACTT-A--TGAGAGCC
45339722 AGTGTAAGACCATGTTTGGGACATGGCATCG
1 AGTGTAAGACCATGTTTGGGACATGGCATCG
45339753 GCATTAGACC
Statistics
Matches: 213, Mismatches: 33, Indels: 37
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 9 0.04
45 17 0.08
46 55 0.26
47 69 0.32
48 27 0.13
49 1 0.00
50 32 0.15
51 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGCCACTTATGAGAGCC
Found at i:45339584 original size:46 final size:45
Alignment explanation
Indices: 45339438--45339610 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 45
45339428 ATGTTTGTGT
* *
45339438 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCACGTT-ATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-TTGATGAGA
* *
45339484 GCCAGTGTAAGACCATGTCTGGGACATAGCATCGG-CATTGATAAGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCTTGAT--GAGA
* *
45339532 GGTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTTGATCTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CTTGAT-GAGA
*
45339578 GCTAGTGTAAGACATGTCTAGGACATGCATCGG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG
45339611 TTACAAGATG
Statistics
Matches: 109, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
45 2 0.02
46 52 0.48
47 30 0.28
48 25 0.23
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCTTGATGAGA
Found at i:45339684 original size:50 final size:49
Alignment explanation
Indices: 45339622--45339755 Score: 184
Period size: 47 Copynumber: 2.8 Consensus size: 49
45339612 TACAAGATGT
*
45339622 GTCAGTATAAGACCATGTTTGGGACATGGCATCGGCACGGATACGTGG-GA
1 GTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGGA-ACG-GGAGA
* **
45339672 GTCAGTGTAAGACCATGTTTGGGACATGGCATC--AACTTAACGGGAGA
1 GTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGGAACGGGAGA
*
45339719 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
1 GTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
45339756 TTAGACCCTG
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
46 2 0.03
47 37 0.49
48 3 0.04
49 1 0.01
50 32 0.43
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGGAACGGGAGA
Found at i:45341900 original size:154 final size:154
Alignment explanation
Indices: 45341667--45341977 Score: 559
Period size: 154 Copynumber: 2.0 Consensus size: 154
45341657 GTTCTTGATA
* *
45341667 GATGAATTGGTTTCCATCTTCTGATATCAATTTTCTACTGAATAATATGTCCTACCCATTACATG
1 GATGAATTGGTTTCCATCTTCTGATATCAATTTTCGACTGAATAATATGTCCCACCCATTACATG
*
45341732 CAGAGCACAGAAAGATAAGGTGATAAAGGGCATCCCTGACAAATACCTCTGACCGGTTTAAACTT
66 CAGAGCACAAAAAGATAAGGTGATAAAGGGCATCCCTGACAAATACCTCTGACCGGTTTAAACTT
45341797 CTGAGTGAGAACGACACTCCAGAT
131 CTGAGTGAGAACGACACTCCAGAT
45341821 GATGAATTGGTTTCCATCTTCTGATATCAATTTTCGACTGAATAATATGTCCCACCCATTACATG
1 GATGAATTGGTTTCCATCTTCTGATATCAATTTTCGACTGAATAATATGTCCCACCCATTACATG
* **
45341886 CAGAGCACAAAAAGATAAGGTGATAAAGGGTATCCCTGATGAATACCTCTGACCGGTTTAAACTT
66 CAGAGCACAAAAAGATAAGGTGATAAAGGGCATCCCTGACAAATACCTCTGACCGGTTTAAACTT
*
45341951 CTGAGTGGGAACGACACTCCAGAT
131 CTGAGTGAGAACGACACTCCAGAT
45341975 GAT
1 GAT
45341978 TTGCATAAAA
Statistics
Matches: 150, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
154 150 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (154 bp):
GATGAATTGGTTTCCATCTTCTGATATCAATTTTCGACTGAATAATATGTCCCACCCATTACATG
CAGAGCACAAAAAGATAAGGTGATAAAGGGCATCCCTGACAAATACCTCTGACCGGTTTAAACTT
CTGAGTGAGAACGACACTCCAGAT
Found at i:45342787 original size:17 final size:17
Alignment explanation
Indices: 45342753--45342786 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
45342743 GGCGCAACTT
45342753 ATTTTTTTAATATTAAA
1 ATTTTTTTAATATTAAA
*
45342770 ATTTTTTTCAT-TTAAA
1 ATTTTTTTAATATTAAA
45342786 A
1 A
45342787 AATTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTTTTAATATTAAA
Found at i:45342915 original size:27 final size:27
Alignment explanation
Indices: 45342862--45342919 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
45342852 ATACATACAT
* *
45342862 GTTGCGCCTATCTGACAAGCTCAACTA
1 GTTGAGCCTATCTGACAAGCGCAACTA
* * *
45342889 GTTGAGCCTATCTGATAGGCGCGACTA
1 GTTGAGCCTATCTGACAAGCGCAACTA
45342916 GTTG
1 GTTG
45342920 TACCTTCTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (27 bp):
GTTGAGCCTATCTGACAAGCGCAACTA
Found at i:45346589 original size:32 final size:32
Alignment explanation
Indices: 45346544--45346660 Score: 121
Period size: 33 Copynumber: 3.6 Consensus size: 32
45346534 ATGAACTTGA
* *
45346544 GCCGAGAGGAGTAGAATACGGTGGTGGATACG
1 GCCGAGAGGAGTAGAGTACGATGGTGGATACG
* *
45346576 GCCGGGAGGAGTAGAGTACGACGGTGGATACG
1 GCCGAGAGGAGTAGAGTACGATGGTGGATACG
* *
45346608 GCTCTAGAGGAGTTGAGTAC-ATGGGTGGATACGG
1 GC-CGAGAGGAGTAGAGTACGAT-GGTGGATAC-G
*
45346642 GCCG-GAAGGAGTGGAGTAC
1 GCCGAG-AGGAGTAGAGTAC
45346661 TGAGATAAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
32 32 0.45
33 36 0.51
34 3 0.04
ACGTcount: A:0.26, C:0.14, G:0.44, T:0.16
Consensus pattern (32 bp):
GCCGAGAGGAGTAGAGTACGATGGTGGATACG
Found at i:45348716 original size:15 final size:16
Alignment explanation
Indices: 45348696--45348727 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
45348686 ATAAATAATA
45348696 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
45348711 ATATAAAAATTACATT
1 ATATAAAAATTACATT
45348727 A
1 A
45348728 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:45349107 original size:115 final size:113
Alignment explanation
Indices: 45348776--45349230 Score: 699
Period size: 115 Copynumber: 4.0 Consensus size: 113
45348766 AACAATTTAG
* * * * *
45348776 AATCATAAATTACTAACACAAAATAACTATAAAATTATTTTTTAAAATACATTACTAAATAAA--
1 AATCTTAAATTACT-A-ATAAAATAGCTATAAAATTATTTTTTAAAATATATTACTAAAAAAATC
45348839 A-AAT-CA-TAATACACTAAACCACTAAACACTAACAATTTATATAACCT
64 ACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
45348886 AATCTTAAATTACTAATAAAATAGCTAT-AAATT-TTTTTTAAAATATATTACTAAAAAAATCAC
1 AATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTTAAAATATATTACTAAAAAAATCAC
45348949 AATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
66 AATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
*
45348997 AATCTTAAATTACTAATAAAATAGCTATAAAAATATATTTTTTAAATTATATTACTAAAAAAATC
1 AATCTTAAATTACTAATAAAATAGCTAT-AAAAT-TATTTTTTAAAATATATTACTAAAAAAATC
*
45349062 ACAATACACTAATACACAAAACCACTAAACACTAACAATTTATATAACCT
64 ACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
* *
45349112 AATCCTAAATTACAAATAAAATAGCTATAAAATTATTTTTTAGAAAATATATTACTAAAAAAATC
1 AATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTT--AAAATATATTACTAAAAAAATC
* **
45349177 ACAATATACTAATACACTAAATTACTAAACACTAACAATTTATATAACCT
64 ACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
45349227 AATC
1 AATC
45349231 AACTATAAAA
Statistics
Matches: 320, Mismatches: 14, Indels: 17
0.91 0.04 0.05
Matches are distributed among these distances:
106 24 0.08
107 5 0.02
108 12 0.04
109 4 0.01
110 15 0.05
111 69 0.22
113 12 0.04
114 6 0.02
115 173 0.54
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (113 bp):
AATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTTAAAATATATTACTAAAAAAATCAC
AATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
Found at i:45349196 original size:100 final size:102
Alignment explanation
Indices: 45349084--45349299 Score: 236
Period size: 100 Copynumber: 2.2 Consensus size: 102
45349074 TACACAAAAC
* *
45349084 CACTAA-ACACTAACAATTTA-TATAAC-CTAATCCTAAATTACA-AATAAAAT-AGCTATAAAA
1 CACTAATACACTAACAA-TTACTA-AACACTAA--C-AAATTACATAACAAAATCAACTATAAAA
*
45349144 TTA-TTTTTTAGAAA-ATA-TATTACTAAAAAAATCACAATA
61 TTATTTTTTTAAAAATATATTATTACTAAAAAAATCACAATA
* * * **
45349183 TACTAATACACT-A-AATTACTAAACACTAACAATTTATATAACCTAATCAACTATAAAATTATT
1 CACTAATACACTAACAATTACTAAACACTAACAAATTACATAACAAAATCAACTATAAAATTATT
45349246 TTTTTAAAAATATATTATTACTAAAAAAATCACAATA
66 TTTTTAAAAATATATTATTACTAAAAAAATCACAATA
45349283 CACTAATACACTGAACA
1 CACTAATACACT-AACA
45349300 CTAACAATTT
Statistics
Matches: 97, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
95 6 0.06
96 6 0.06
97 18 0.19
98 18 0.19
99 9 0.09
100 38 0.39
102 1 0.01
103 1 0.01
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.32
Consensus pattern (102 bp):
CACTAATACACTAACAATTACTAAACACTAACAAATTACATAACAAAATCAACTATAAAATTATT
TTTTTAAAAATATATTATTACTAAAAAAATCACAATA
Found at i:45349489 original size:3 final size:3
Alignment explanation
Indices: 45349483--45349521 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
45349473 ATTACCCTTT
45349483 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
45349522 CTCTCCTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:45350297 original size:15 final size:16
Alignment explanation
Indices: 45350279--45350331 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
45350269 TTTTTTAAAA
45350279 TAAAAATATTAAAT-T
1 TAAAAATATTAAATAT
45350294 TAAAAA-AGTTATAATAT
1 TAAAAATA-TTA-AATAT
*
45350311 TAAATAT-TTAAATAT
1 TAAAAATATTAAATAT
45350326 TAAAAA
1 TAAAAA
45350332 ATACTATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 1 0.03
15 19 0.59
16 6 0.19
17 6 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
TAAAAATATTAAATAT
Found at i:45355761 original size:49 final size:49
Alignment explanation
Indices: 45355689--45355882 Score: 212
Period size: 50 Copynumber: 3.9 Consensus size: 49
45355679 GCCGAAGCTA
* *
45355689 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
45355738 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
** * * *
45355788 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
45355836 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
45355883 TCACAATAGA
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 38 0.31
50 41 0.34
51 40 0.33
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:45355873 original size:101 final size:99
Alignment explanation
Indices: 45355700--45355886 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
45355690 CTGGTACGCA
* * *
45355700 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
45355765 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
45355799 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
45355863 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
45355887 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.39
101 43 0.56
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Done.