Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 163 of 345
Found at i:45358068 original size:15 final size:15
Alignment explanation
Indices: 45358012--45358076 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
45358002 TAAAGATAAC
*
45358012 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
45358026 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
45358041 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
45358056 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
45358071 AAGAAA
1 AAGAAA
45358077 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:45358078 original size:30 final size:31
Alignment explanation
Indices: 45358012--45358080 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
45358002 TAAAGATAAC
*
45358012 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
45358042 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
45358071 AAGAAACCCA
1 AAGAAACCCA
45358081 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:45361247 original size:99 final size:97
Alignment explanation
Indices: 45361075--45361261 Score: 268
Period size: 99 Copynumber: 1.9 Consensus size: 97
45361065 ATCTGGTACG
* * *
45361075 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACT
*
45361140 TAGTACTACACACGTGACCTCACCATCTAATA
66 TAGTACTACACACGCGACCTCACCATCTAATA
* * *
45361172 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGC
*
45361236 ACTTAGTACTACACATGCGACCTCAC
63 ACTTAGTACTACACACGCGACCTCAC
45361262 AATAGATCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
96 4 0.05
97 32 0.41
99 43 0.54
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (97 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCTCACCATCTAATA
Found at i:45361248 original size:51 final size:48
Alignment explanation
Indices: 45361066--45361250 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 48
45361056 GCCGAAGCTA
* *
45361066 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC-ACAG
* *
45361115 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CA-CAG
** *
45361165 TCTAATA--CATAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACAG
*
45361211 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ---TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
45361251 TGCGACCTCA
Statistics
Matches: 116, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
45 2 0.02
46 2 0.02
48 32 0.28
49 42 0.36
50 7 0.06
51 31 0.27
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACAG
Found at i:45368347 original size:29 final size:29
Alignment explanation
Indices: 45368302--45368419 Score: 125
Period size: 29 Copynumber: 4.1 Consensus size: 29
45368292 TGTGACATGT
*
45368302 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
45368330 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* **
45368359 ATAAGAATATGAACAGGGCC-AGATGGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * *
45368388 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
45368416 ATAT
1 ATAT
45368420 CATGTATGTA
Statistics
Matches: 72, Mismatches: 15, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
28 20 0.28
29 52 0.72
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:45375683 original size:47 final size:50
Alignment explanation
Indices: 45375599--45375919 Score: 170
Period size: 47 Copynumber: 6.8 Consensus size: 50
45375589 CAAACATAGG
** ** * *
45375599 GTATAA-TGCCGATGCCATGCCCCTTACATGGTTTTACACTGGCTCTCAC
1 GTATAAGTGCCGATGCCATATCCCAAACATGGTCTTACACTGACTCTCAC
*
45375648 GT-TAAGT-CC-ATGCCATATCCCAGACATGGTCTTACACTGACTCTCAC
1 GTATAAGTGCCGATGCCATATCCCAAACATGGTCTTACACTGACTCTCAC
** * *
45375695 GTATCTGTGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCA-
1 GTATAAGTGCCGATGCCATATCCCAAACATGGTCTTACACTGACTC-TCAC
* * * *
45375745 -TGT--G-GCCAATG-CATGTCCCAAACAT-GTCTTACACTGGCT-T-AC
1 GTATAAGTGCCGATGCCATATCCCAAACATGGTCTTACACTGACTCTCAC
* * * * *
45375787 ATCTCGAG-GCCGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCT--C
1 GTAT-AAGTGCCGATGCCATATCCCAAACATGGTCTTACACTGA-CTCTCAC
* * * * *
45375833 GTCTCAA-TGCTGATGCCATGTCCCAAACATGCTCTTACACTGGCTCTCA-
1 GTAT-AAGTGCCGATGCCATATCCCAAACATGGTCTTACACTGACTCTCAC
* * *
45375882 -TA-ATGTGGCCGATG-CATGTCCCAAACAT-ATCTTACACT
1 GTATAAGT-GCCGATGCCATATCCCAAACATGGTCTTACACT
45375920 AGCACAAAAA
Statistics
Matches: 223, Mismatches: 29, Indels: 43
0.76 0.10 0.15
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 2 0.01
44 12 0.05
45 14 0.06
46 60 0.27
47 64 0.29
48 28 0.13
49 7 0.03
50 31 0.14
51 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (50 bp):
GTATAAGTGCCGATGCCATATCCCAAACATGGTCTTACACTGACTCTCAC
Found at i:45375806 original size:46 final size:45
Alignment explanation
Indices: 45375703--45375919 Score: 215
Period size: 46 Copynumber: 4.7 Consensus size: 45
45375693 ACGTATCTGT
* * *
45375703 GCCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATCATGTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATC-TGAG
*
45375749 GCCAATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATCT-GAG
* * * * *
45375795 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCT-GAG
* * *
45375841 GCTGATGCCATGTCCCAAACATGCTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAAACATG-TCTTACACTGGCTCTCAT-CTGAG
*
45375889 GCCGATGCATGTCCCAAACATATCTTACACT
1 GCCGATGCATGTCCCAAACATGTCTTACACT
45375920 AGCACAAAAA
Statistics
Matches: 143, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 65 0.45
47 29 0.20
48 22 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCTGAG
Found at i:45375899 original size:140 final size:140
Alignment explanation
Indices: 45375665--45375919 Score: 363
Period size: 140 Copynumber: 1.8 Consensus size: 140
45375655 CCATGCCATA
** *
45375665 TCCCAGACATGGTCTTACACTGACTCTCACGTATCTGTGCCGATGCCATGTCCCAAACATGGTCT
1 TCCCAGACATGGTCTTACACTGACTCT-ACGTATCAATGCCGATGCCATGTCCCAAACATGCTCT
* *
45375730 TACACTGACACATCATGTGGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGAG
65 TACACTGACACATAATGTGGCCAATGCATGTCCCAAACATATCTTACACTGGCTTACATCTCGAG
45375795 GCCGATGCATG
130 GCCGATGCATG
* *
45375806 TCCCAGACAT-GTCTTACACT-AGCTCT-CGTCTCAATGCTGATGCCATGTCCCAAACATGCTCT
1 TCCCAGACATGGTCTTACACTGA-CTCTACGTATCAATGCCGATGCCATGTCCCAAACATGCTCT
* * *
45375868 TACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACATATCTTACACT
65 TACACT-G-ACACATAATGTGGCCAATGCATGTCCCAAACATATCTTACACT
45375920 AGCACAAAAA
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
138 37 0.37
139 2 0.02
140 52 0.51
141 10 0.10
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.27
Consensus pattern (140 bp):
TCCCAGACATGGTCTTACACTGACTCTACGTATCAATGCCGATGCCATGTCCCAAACATGCTCTT
ACACTGACACATAATGTGGCCAATGCATGTCCCAAACATATCTTACACTGGCTTACATCTCGAGG
CCGATGCATG
Found at i:45378048 original size:39 final size:39
Alignment explanation
Indices: 45377994--45378085 Score: 159
Period size: 39 Copynumber: 2.4 Consensus size: 39
45377984 GCATGATATT
*
45377994 TGGAAACACATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
45378033 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
45378072 TGG-AATATATCCGG
1 TGGAAACATATCCGG
45378086 GCCTAAAGTC
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 10 0.20
39 41 0.80
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:45378100 original size:39 final size:39
Alignment explanation
Indices: 45377994--45378104 Score: 125
Period size: 39 Copynumber: 2.8 Consensus size: 39
45377984 GCATGATATT
* * * *
45377994 TGGAAACACATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACCTAAAGTCCGCAGGCTACGTGC
* * *
45378033 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACCTAAAGTCCGCAGGCTACGTGC
* *
45378072 TGG-AATATATCCGGGCCTAAAGTCCCGCAGGCT
1 TGGAAACATATCCGGACCTAAAGT-CCGCAGGCT
45378105 TTGTGCTAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 15 0.23
39 50 0.77
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.20
Consensus pattern (39 bp):
TGGAAACATATCCGGACCTAAAGTCCGCAGGCTACGTGC
Found at i:45380181 original size:14 final size:14
Alignment explanation
Indices: 45380162--45380192 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
45380152 ATATATTTAC
*
45380162 ATAATAAATATATA
1 ATAATAAATAAATA
45380176 ATAATAAATAAATA
1 ATAATAAATAAATA
45380190 ATA
1 ATA
45380193 TGATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:45380641 original size:18 final size:18
Alignment explanation
Indices: 45380618--45380690 Score: 78
Period size: 18 Copynumber: 4.0 Consensus size: 18
45380608 ATAACAAGTA
45380618 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
45380636 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
* * *
45380654 ACGGT-TTAGTAGGGT-GTGG
1 -GGGTGAT-GGA-GGTAGTGG
45380673 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
45380691 ATGGTTTAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.07
18 28 0.64
19 10 0.23
20 3 0.07
ACGTcount: A:0.16, C:0.01, G:0.58, T:0.25
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:45380669 original size:29 final size:29
Alignment explanation
Indices: 45380636--45380735 Score: 92
Period size: 29 Copynumber: 3.2 Consensus size: 29
45380626 GAGGTAGTGG
45380636 GGGTGATGGAGGTAGTGGACGGTTTAGTA
1 GGGTGATGGAGGTAGTGGACGGTTTAGTA
*
45380665 GGGTGTGGGGGTGATGGAGGTAGTGGATGGTTTAGTA
1 --------GGGTGATGGAGGTAGTGGACGGTTTAGTA
* * *
45380702 GGGTGATGGAGTTAGTGGTCGGTTTAGTG
1 GGGTGATGGAGGTAGTGGACGGTTTAGTA
45380731 GGGTG
1 GGGTG
45380736 TTTAATTTGG
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
29 30 0.52
37 28 0.48
ACGTcount: A:0.16, C:0.02, G:0.52, T:0.30
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGACGGTTTAGTA
Found at i:45380682 original size:37 final size:37
Alignment explanation
Indices: 45380632--45380706 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
45380622 GATGGAGGTA
45380632 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
*
45380669 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
45380706 G
1 G
45380707 ATGGAGTTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.16, C:0.01, G:0.55, T:0.28
Consensus pattern (37 bp):
GTGGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
Found at i:45381146 original size:43 final size:43
Alignment explanation
Indices: 45381086--45381295 Score: 149
Period size: 43 Copynumber: 4.8 Consensus size: 43
45381076 TCACCAAAAT
*
45381086 TTTA-TCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTA
1 TTTAGTCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGTA
* * * *
45381128 TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAG-GCTTGTGGC
1 TTTAGTCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGT--A
** * * ** * * * **
45381172 TGAAATCTGCTCCATTGTTGATACA-TGGAGATAAGATTAACCAAAA
1 TTTAGTCTGCTCCACTCCTGCT-CAGTGAAGATAAGA-T--CTAGTA
* * *
45381218 TTT-GATCTGCTCCGCTCCTACTCAGCGAAGATAAGATCTAGTA
1 TTTAG-TCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGTA
*
45381261 TTTAGACTGCTCCACTCCTGCTCAGTGAAGATAAG
1 TTTAGTCTGCTCCACTCCTGCTCAGTGAAGATAAG
45381296 GCTGGTGGCT
Statistics
Matches: 119, Mismatches: 38, Indels: 21
0.67 0.21 0.12
Matches are distributed among these distances:
42 8 0.07
43 60 0.50
44 24 0.20
45 5 0.04
46 21 0.18
48 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
TTTAGTCTGCTCCACTCCTGCTCAGTGAAGATAAGATCTAGTA
Found at i:45381171 original size:133 final size:133
Alignment explanation
Indices: 45380948--45381389 Score: 686
Period size: 133 Copynumber: 3.3 Consensus size: 133
45380938 GATCTACTGT
*** * * *
45380948 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATTTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTA--TTTAGCCTGCTCCACTCC
*
45381013 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGTTCCATTGCCGATACATGGAGATAAGATTC
64 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
45381078 ACCAA
129 ACCAA
*
45381083 AATTTTATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
* ** *
45381148 CTCAGTGAAGATAAGGCTTGTGGCTGAAATCTGCTCCATTGTTGATACATGGAGATAAGATTAAC
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
45381213 CAA
131 CAA
* * *
45381216 AATTTGATCTGCTCCGCTCCTACTCAGCGAAGATAAGATCTAGTATTTAGACTGCTCCACTCCTG
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
* * *
45381281 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGGCGATACATAGAGATAAGATTCGC
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
45381346 CAA
131 CAA
* *
45381349 AATTTGATCTGCTCCGCTTCTGTTCAGTGAAGATAAGATCT
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCT
45381390 GTCAAAATTT
Statistics
Matches: 281, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
133 243 0.86
135 38 0.14
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (133 bp):
AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
CAA
Found at i:45382359 original size:24 final size:24
Alignment explanation
Indices: 45382332--45382379 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
45382322 TAGCCTTGGC
45382332 CTCTCCTTTGCTTTTT-TTTTCTTT
1 CTCTCCTTTG-TTTTTCTTTTCTTT
**
45382356 CTCTTTTTTGTTTTTCTTTTCTTT
1 CTCTCCTTTGTTTTTCTTTTCTTT
45382380 TTACTTTTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.00, C:0.21, G:0.04, T:0.75
Consensus pattern (24 bp):
CTCTCCTTTGTTTTTCTTTTCTTT
Found at i:45382364 original size:13 final size:12
Alignment explanation
Indices: 45382346--45382413 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 12
45382336 CCTTTGCTTT
45382346 TTTTTTCTTTCTC
1 TTTTTT-TTTCTC
*
45382359 TTTTTTGTTTTTC
1 TTTTTT-TTTCTC
45382372 TTTTCTTTTTACT-
1 TTTT-TTTTT-CTC
45382385 TTTCCTTTTTTCTC
1 TTT--TTTTTTCTC
45382399 TTTCTTTTTTCTC
1 TTT-TTTTTTCTC
45382412 TT
1 TT
45382414 CTGTTTTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
13 35 0.74
14 11 0.23
15 1 0.02
ACGTcount: A:0.01, C:0.19, G:0.01, T:0.78
Consensus pattern (12 bp):
TTTTTTTTTCTC
Found at i:45382371 original size:19 final size:17
Alignment explanation
Indices: 45382343--45382425 Score: 69
Period size: 18 Copynumber: 4.5 Consensus size: 17
45382333 TCTCCTTTGC
45382343 TTTTTTTTTCTTTCTCTT
1 TTTTTTTTTCTTT-TCTT
45382361 TTTTGTTTTTCTTTTCTT
1 TTTT-TTTTTCTTTTCTT
45382379 TTTACTTTTCCTT-TTTTCTCT
1 TTT--TTTT--TTCTTTTCT-T
* *
45382400 TTCTTTTTTCTCTTCTGT
1 TTTTTTTTTCTTTTCT-T
45382418 TTTTTTTT
1 TTTTTTTT
45382426 GAAAGTGAAG
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.04
18 24 0.44
19 16 0.30
20 7 0.13
21 5 0.09
ACGTcount: A:0.01, C:0.17, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTTTTTTCTTTTCTT
Found at i:45382386 original size:7 final size:6
Alignment explanation
Indices: 45382343--45382407 Score: 53
Period size: 6 Copynumber: 10.7 Consensus size: 6
45382333 TCTCCTTTGC
* * *
45382343 TTTT-T TTTTCT TTCTCTT TTTTGT TTTTC- TTTTCT TTTTACT TTTCCTT
1 TTTTCT TTTTCT TTTTC-T TTTTCT TTTTCT TTTTCT TTTT-CT TTTTC-T
*
45382392 TTTTCT CTTTCT TTTT
1 TTTTCT TTTTCT TTTT
45382408 TCTCTTCTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
5 9 0.19
6 24 0.51
7 14 0.30
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTCT
Found at i:45382420 original size:13 final size:12
Alignment explanation
Indices: 45382366--45382421 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
45382356 CTCTTTTTTG
*
45382366 TTTTTCTTTTCT
1 TTTTTCTCTTCT
* *
45382378 TTTTACTTTTCCT
1 TTTTTCTCTT-CT
45382391 TTTTTCTCTTTCT
1 TTTTTCTC-TTCT
45382404 TTTTTCTCTTCT
1 TTTTTCTCTTCT
45382416 GTTTTT
1 -TTTTT
45382422 TTTTGAAAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
12 13 0.34
13 23 0.61
14 2 0.05
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTCTCTTCT
Found at i:45382420 original size:26 final size:26
Alignment explanation
Indices: 45382364--45382425 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
45382354 TTCTCTTTTT
*
45382364 TGTTTTTCTTTTCTTTTTACTTTTCC
1 TGTTTTTCTTTTCTTTTTACTCTTCC
*
45382390 T-TTTTTCTCTTTCTTTTTTCTCTT-C
1 TGTTTTTCT-TTTCTTTTTACTCTTCC
45382415 TGTTTTT-TTTT
1 TGTTTTTCTTTT
45382426 GAAAGTGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 3 0.09
25 10 0.31
26 19 0.59
ACGTcount: A:0.02, C:0.18, G:0.03, T:0.77
Consensus pattern (26 bp):
TGTTTTTCTTTTCTTTTTACTCTTCC
Found at i:45382423 original size:15 final size:13
Alignment explanation
Indices: 45382366--45382413 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
45382356 CTCTTTTTTG
45382366 TTTTTCT-TTTCT
1 TTTTTCTCTTTCT
*
45382378 TTTTACT-TTTCCT
1 TTTTTCTCTTT-CT
45382391 TTTTTCTCTTTCT
1 TTTTTCTCTTTCT
45382404 TTTTTCTCTT
1 TTTTTCTCTT
45382414 CTGTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
12 9 0.28
13 20 0.62
14 3 0.09
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTCTCTTTCT
Found at i:45383645 original size:15 final size:14
Alignment explanation
Indices: 45383620--45383685 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 14
45383610 ATTTCTTTTC
*
45383620 TTTTCTTTCT-CTT
1 TTTTCTTTTTCCTT
*
45383633 TTTTATTTTTCTCCTCT
1 TTTT-CTTTT-TCCT-T
*
45383650 TTTTCCTTTTCCTT
1 TTTTCTTTTTCCTT
*
45383664 TTTTCTCTTTCCTT
1 TTTTCTTTTTCCTT
45383678 TTTCTCTT
1 TTT-TCTT
45383686 CTTTTTTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
13 4 0.10
14 19 0.46
15 8 0.20
16 5 0.12
17 5 0.12
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTCTTTTTCCTT
Found at i:45383692 original size:13 final size:13
Alignment explanation
Indices: 45383611--45383693 Score: 53
Period size: 13 Copynumber: 6.2 Consensus size: 13
45383601 TGGCCTCTCA
*
45383611 TTTCTTTTCTTTT
1 TTTCTCTTCTTTT
45383624 CTTTCTCTT-TTTT
1 -TTTCTCTTCTTTT
* *
45383637 ATTTTTCTCCTCTTT
1 -TTTCTCTTCT-TTT
* * *
45383652 TTCCTTTTCCTTT
1 TTTCTCTTCTTTT
*
45383665 TTTCTCTT-TCCTT
1 TTTCTCTTCT-TTT
45383678 TTTCTCTTCTTTT
1 TTTCTCTTCTTTT
45383691 TTT
1 TTT
45383694 TTTGAAAGTG
Statistics
Matches: 51, Mismatches: 14, Indels: 9
0.69 0.19 0.12
Matches are distributed among these distances:
13 34 0.67
14 14 0.27
15 3 0.06
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTCTCTTCTTTT
Found at i:45383693 original size:40 final size:41
Alignment explanation
Indices: 45383614--45383693 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 41
45383604 CCTCTCATTT
* * *
45383614 CTTTTCTTTTCTTTCTCTTTTTTATTTTTCTCCTCTTTTTC
1 CTTTTCCTTTCTTTCTCTTTCTTATTTCTCTCCTCTTTTTC
* *
45383655 CTTTTCCTTT-TTTCTCTTTCCTT-TTTCTCTTCTTTTTTT
1 CTTTTCCTTTCTTTCTCTTT-CTTATTTCTCTCCTCTTTTT
45383694 TTTGAAAGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
40 22 0.67
41 11 0.33
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.74
Consensus pattern (41 bp):
CTTTTCCTTTCTTTCTCTTTCTTATTTCTCTCCTCTTTTTC
Found at i:45386231 original size:13 final size:14
Alignment explanation
Indices: 45386215--45386243 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45386205 AAAAAAAAAG
45386215 AAGAG-AAAAAGGA
1 AAGAGAAAAAAGGA
45386228 AAGAGAAAAAAGGA
1 AAGAGAAAAAAGGA
45386242 AA
1 AA
45386244 AGGGAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (14 bp):
AAGAGAAAAAAGGA
Found at i:45386245 original size:15 final size:15
Alignment explanation
Indices: 45386215--45386275 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
45386205 AAAAAAAAAG
45386215 AAGAG-AAAAAGG-A
1 AAGAGAAAAAAGGAA
45386228 AAGAGAAAAAAGGAA
1 AAGAGAAAAAAGGAA
* *
45386243 AAGGGAAAAGAGGAGA
1 AAGAGAAAAAAGGA-A
* *
45386259 AAAACAAAAAAGAGAA
1 AAGAGAAAAAAG-GAA
45386275 A
1 A
45386276 GAAAAGAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
13 5 0.13
14 7 0.18
15 13 0.34
16 11 0.29
17 2 0.05
ACGTcount: A:0.70, C:0.02, G:0.28, T:0.00
Consensus pattern (15 bp):
AAGAGAAAAAAGGAA
Found at i:45387922 original size:133 final size:133
Alignment explanation
Indices: 45387526--45387953 Score: 775
Period size: 133 Copynumber: 3.2 Consensus size: 133
45387516 ATTAAAATTA
*
45387526 CAGATTTCAGCCACAAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACTAGATCTTA
1 CAGATTTCAGCCACCAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACTAGATCTTA
*
45387591 TCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGCCAATG
66 TCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAATG
45387656 GAG
131 GAG
* * *
45387659 CAGATTTCAGCCACCAGCCTTATCTTCACTAAGCAGGAGTGGAGCAGGCAAAACATACTAGATCT
1 CAGATTTCAGCCACCAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGC-TAA-ATACTAGATCT
*
45387724 TATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCAGCAA
64 TATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAA
45387789 TGGAG
129 TGGAG
45387794 CAGATTTCAGCCACCAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACTAGATCTTA
1 CAGATTTCAGCCACCAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACTAGATCTTA
45387859 TCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAATG
66 TCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAATG
45387924 GAG
131 GAG
*
45387927 CATATTTCAGCCACCAGCCTTATCTTC
1 CAGATTTCAGCCACCAGCCTTATCTTC
45387954 TGTGACAACC
Statistics
Matches: 282, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
133 152 0.54
134 4 0.01
135 126 0.45
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (133 bp):
CAGATTTCAGCCACCAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACTAGATCTTA
TCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAATG
GAG
Found at i:45389282 original size:68 final size:70
Alignment explanation
Indices: 45389210--45389386 Score: 243
Period size: 71 Copynumber: 2.5 Consensus size: 70
45389200 ACACCCTGTA
* * * *
45389210 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
45389272 ATAAAT
65 ATAAAT
* *
45389278 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACTATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
45389343 ATAAAT
65 ATAAAT
*
45389349 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACAC
45389387 AAGAGAGCTA
Statistics
Matches: 99, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
68 24 0.24
69 3 0.03
70 1 0.01
71 71 0.72
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:45389333 original size:71 final size:71
Alignment explanation
Indices: 45389246--45389386 Score: 282
Period size: 71 Copynumber: 2.0 Consensus size: 71
45389236 GATGTATCCC
45389246 ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
1 ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
45389311 GACACT
66 GACACT
45389317 ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
1 ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
45389382 GACAC
66 GACAC
45389387 AAGAGAGCTA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (71 bp):
ATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
GACACT
Found at i:45396085 original size:28 final size:28
Alignment explanation
Indices: 45396016--45396116 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
45396006 GACAAGATTG
* * * *
45396016 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
45396046 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
45396074 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
45396103 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45396117 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:45404010 original size:28 final size:28
Alignment explanation
Indices: 45403941--45404041 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
45403931 GACAAGATTG
* * * *
45403941 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
45403971 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
45403999 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
45404028 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45404042 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:45405674 original size:70 final size:69
Alignment explanation
Indices: 45405532--45406558 Score: 496
Period size: 70 Copynumber: 14.6 Consensus size: 69
45405522 AGATAGCTGG
* * * *
45405532 GAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTGCGG-CCTTAAACCTGTGAGCCTTAATAATG
1 GAGCTTTGAACTCTCGCTAACTATTT-AGGGGCTGCGGTACTT-TACCTGTGAGCCTTAAT-ATG
* *
45405596 ATACTGA
63 ACATTGA
* * * * * *
45405603 GAGCTTTTAGCTCTCGTTAACTATTTGGGGGCT-CTGGTACTTCACTTGTGAGCCTTAATATGAC
1 GAGCTTTGAACTCTCGCTAACTATTTAGGGGCTGC-GGTACTTTACCTGTGAGCCTTAATATGAC
45405667 AGTTGA
65 A-TTGA
* * * *
45405673 GAGCTTTGAACTCTTGCTAACTATTTAGGGGTTGCGGTACTTTACCTGTAAGCCTTAATATTACA
1 GAGCTTTGAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTGAGCCTTAATATGACA
*
45405738 TCTGG
66 T-TGA
* * * *
45405743 GAGCTTTGAACTTTTGCTAACTATTTAGGGGTTGCGATACTTTACCTGTGAGCCTTAATA-GTAC
1 GAGCTTTGAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTGAGCCTTAATATG-AC
*
45405807 AACT-A
65 -ATTGA
* * * ** * *
45405812 GAAGCTTTGAACTCTCGCTAACTATTTAGGGGTTGGGGTACTTTACCTGCGAGTGTTAATATTAT
1 G-AGCTTTGAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTGAGCCTTAATATGAC
*
45405877 GTATGA
65 AT-TGA
* * * * * * *
45405883 GAGCTTTGAAATCTTGCTAACTGTTTAGGGGCTACGGTA-TTGAACTTGTGAG-CTTGAGGTTAT
1 GAGCTTTGAACTCTCGCTAACTATTTAGGGGCTGCGGTACTT-TACCTGTGAGCCTT-A--ATAT
*
45405946 -AGC-TAG-
62 GA-CATTGA
* * * * * ** * *
45405952 GAGC-TTCAGGC-CTCGCTAACTATTCT-GGAGGTTGCGGTATTTTACTTACGAGCCTTAACATT
1 GAGCTTTGA-ACTCTCGCTAACTATT-TAGG-GGCTGCGGTACTTTACCTGTGAGCCTTAATATG
* *
45406014 ACAACTGG
63 AC-ATTGA
* * * * **
45406022 GGGCTTTGAACTCTCGCTAACTATTTGGGAGGCTGTGGTA-TTGAACCTACGAGCCTTAATAATG
1 GAGCTTTGAACTCTCGCTAACTATTTAGG-GGCTGCGGTACTT-TACCTGTGAGCCTTAAT-ATG
45406086 ACAGTTGA
63 ACA-TTGA
* * * * * * * * * *
45406094 GAGCTTTTAACTCTCACTAATTGTTTGGGGGGCTGTGGTA-TTGAACCTATGAGCCTTAACATTA
1 GAGCTTTGAACTCTCGCTAACTATTT-AGGGGCTGCGGTACTT-TACCTGTGAGCCTTAATATGA
*
45406158 CATTTGG
64 CA-TTGA
* * * * * ** *
45406165 GAGCCTT-AGCTCTCGCTAACTGTTTCGGAGGCTGCGGTATTTTACCTACGAGCCTT-ATATTAC
1 GAGCTTTGAACTCTCGCTAACTATTTAGG-GGCTGCGGTACTTTACCTGTGAGCCTTAATATGAC
*
45406228 AACTGA
65 -ATTGA
* * * ** * * * *
45406234 GAGCTTTAAACTCTTGCTAACTATTTTGGGGCTATGATA-TTAAACT-TACAAGCCTTAATAATG
1 GAGCTTTGAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGT--GAGCCTTAAT-ATG
*
45406297 ACAGCTGA
63 ACA-TTGA
* * * * * *
45406305 GAGCTTTTAACTCTCGCTAACTGTTTGGTGGGCTGCGGTA-TTAAACCTGCGAGTCTTAATAATG
1 GAGCTTTGAACTCTCGCTAACTATTTAG-GGGCTGCGGTACTT-TACCTGTGAGCCTTAAT-ATG
* *
45406369 A-GTTGG
63 ACATTGA
* * * * * * * * *
45406375 GAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTACAGTACTTTACCTATTAGCCTTAATCTAAT
1 GAGCTTTGAACTCTCGCTAACTATTT-AGGGGCTGCGGTACTTTACCTGTGAGCCTTAATATGAC
*
45406440 AGATGA
65 A-TTGA
* * * * * * *
45406446 GAGCTTTGAACTCTCGCTAACCATTT-GAAGGCTACGGTTCTTTACTTGTAAGCCTTAATATTAC
1 GAGCTTTGAACTCTCGCTAACTATTTAG-GGGCTGCGGTACTTTACCTGTGAGCCTTAATATGAC
* *
45406510 AGCTAA
65 A-TTGA
* * ** *
45406516 GAGTTTTAAACTCTTACTAACTATTTAGGGGCTGCAGTA-TTTA
1 GAGCTTTGAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTA
45406559 ACCTACTAGC
Statistics
Matches: 750, Mismatches: 156, Indels: 102
0.74 0.15 0.10
Matches are distributed among these distances:
67 3 0.00
68 22 0.03
69 70 0.09
70 413 0.55
71 154 0.21
72 81 0.11
73 7 0.01
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (69 bp):
GAGCTTTGAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTGAGCCTTAATATGACA
TTGA
Found at i:45405768 original size:140 final size:139
Alignment explanation
Indices: 45405526--45406558 Score: 578
Period size: 140 Copynumber: 7.4 Consensus size: 139
45405516 TTAGAAAGAT
* * * * *
45405526 AGCTGGGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTGCGG-CCTTAAACCTGTGAGCCTTA
1 AGCTGAGAGCTTTTAACTCTCGCTAACTATTT-AGGGGCTGCGGTACTT-TACCTGTAAGCCTTA
* * * * * * *
45405590 ATAAT-GATACTGAGAGCTTTTAGCTCTCGTTAACTATTTGGGGGCT-CTGGTACTTCACTTGTG
64 ATATTACAT-CTGAGAGCTTTGAACTCTCGCTAACTATTTGGGGGCTAC-GGTA-TTAACCTGTG
45405653 AGCCTTAATATGAC
126 AGCCTTAATATGAC
* * * *
45405667 AGTTGAGAGCTTTGAACTCTTGCTAACTATTTAGGGGTTGCGGTACTTTACCTGTAAGCCTTAAT
1 AGCTGAGAGCTTTTAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTAAGCCTTAAT
* * * * * * * *
45405732 ATTACATCTGGGAGCTTTGAACTTTTGCTAACTATTTAGGGGTTGCGATACTTTACCTGTGAGCC
66 ATTACATCTGAGAGCTTTGAACTCTCGCTAACTATTTGGGGGCTACGGTA-TTAACCTGTGAGCC
45405797 TTAATA-GTAC
130 TTAATATG-AC
* * * * ** **
45405807 AACT-AGAAGCTTTGAACTCTCGCTAACTATTTAGGGGTTGGGGTACTTTACCTGCGAGTGTTAA
1 AGCTGAG-AGCTTTTAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTAAGCCTTAA
** * * * * * *
45405871 TATTATGTATGAGAGCTTTGAAATCTTGCTAACTGTTTAGGGGCTACGGTATTGAACTTGTGAG-
65 TATTACATCTGAGAGCTTTGAACTCTCGCTAACTATTTGGGGGCTACGGTATT-AACCTGTGAGC
* ** * *
45405935 CTTGAGGTTAT
129 CTTAATATGAC
* * * *
45405946 AGCT-AGGAGC-TTCAGGC-CTCGCTAACTATTCT-GGAGGTTGCGGTATTTTA-CT-TACGAGC
1 AGCTGA-GAGCTTTTA-ACTCTCGCTAACTATT-TAGG-GGCTGCGGTACTTTACCTGTA--AGC
* * * * **
45406005 CTTAACATTACAACTGGGGGCTTTGAACTCTCGCTAACTATTTGGGAGGCTGTGGTATTGAACCT
60 CTTAATATTACATCTGAGAGCTTTGAACTCTCGCTAACTATTTGGG-GGCTACGGTATT-AACCT
**
45406070 ACGAGCCTTAATAATGAC
123 GTGAGCCTTAAT-ATGAC
* * * * * * * * *
45406088 AGTTGAGAGCTTTTAACTCTCACTAATTGTTTGGGGGGCTGTGGTA-TTGAACCTATGAGCCTTA
1 AGCTGAGAGCTTTTAACTCTCGCTAACTATTT-AGGGGCTGCGGTACTT-TACCTGTAAGCCTTA
* * * * * * * * * **
45406152 ACATTACATTTGGGAGCCTT-AGCTCTCGCTAACTGTTTCGGAGGCTGCGGTATTTTACCTACGA
64 ATATTACATCTGAGAGCTTTGAACTCTCGCTAACTATTT-GGGGGCTACGGTA-TTAACCTGTGA
*
45406216 GCCTT-ATATTAC
127 GCCTTAATATGAC
* * * * ** * * *
45406228 AACTGAGAGCTTTAAACTCTTGCTAACTATTTTGGGGCTATGATA-TTAAACT-TACAAGCCTTA
1 AGCTGAGAGCTTTTAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGT--AAGCCTTA
* * * * * *
45406291 ATAATGACAGCTGAGAGCTTTTAACTCTCGCTAACTGTTTGGTGGGCTGCGGTATTAAACCTGCG
64 AT-ATTACATCTGAGAGCTTTGAACTCTCGCTAACTATTTGG-GGGCTACGGTATT-AACCTGTG
*
45406356 AGTCTTAATAATG--
126 AGCCTTAAT-ATGAC
* * * * * * *
45406369 AGTTGGGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTACAGTACTTTACCTATTAGCCTTAA
1 AGCTGAGAGCTTTTAACTCTCGCTAACTATTT-AGGGGCTGCGGTACTTTACCTGTAAGCCTTAA
* * * ** * ** * * * *
45406434 TCTAATAGATGAGAGCTTTGAACTCTCGCTAACCATTTGAAGGCTACGGTTCTTTACTTGTAAGC
65 TATTACATCTGAGAGCTTTGAACTCTCGCTAACTATTTGGGGGCTACGG-TATTAACCTGTGAGC
*
45406499 CTTAATATTAC
129 CTTAATATGAC
* ** *
45406510 AGCTAAGAG-TTTTAAACTCTTACTAACTATTTAGGGGCTGCAGTA-TTTA
1 AGCTGAGAGCTTTT-AACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTA
45406559 ACCTACTAGC
Statistics
Matches: 694, Mismatches: 157, Indels: 84
0.74 0.17 0.09
Matches are distributed among these distances:
137 1 0.00
138 24 0.03
139 94 0.14
140 280 0.40
141 161 0.23
142 71 0.10
143 57 0.08
144 5 0.01
145 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (139 bp):
AGCTGAGAGCTTTTAACTCTCGCTAACTATTTAGGGGCTGCGGTACTTTACCTGTAAGCCTTAAT
ATTACATCTGAGAGCTTTGAACTCTCGCTAACTATTTGGGGGCTACGGTATTAACCTGTGAGCCT
TAATATGAC
Found at i:45406308 original size:211 final size:213
Alignment explanation
Indices: 45405963--45406472 Score: 575
Period size: 211 Copynumber: 2.4 Consensus size: 213
45405953 AGCTTCAGGC
* * * *
45405963 CTCGCTAACTATTCTGGAGGTTGCGGTATTTTACTTACGAGCCTTAACATTACAACTGGGGGCTT
1 CTCGCTAACTATTCTGGAGGCTGCGGTATTTTACCTACGAGCCTTAACATTACAACTGAGAGCTT
* * * * * *
45406028 TGAACTCTCGCTAACTATTTGGGAGGCTGTGGTATTGAACCTACGAGCCTTAATAATGACAGTTG
66 TAAACTCTCGCTAACTATTTGGGAGGCTATGATATTAAACCTACAAGCCTTAATAATGACAGCTG
* * *
45406093 AGAGCTTTTAACTCTCACTAATTGTTTGGGGGGCTGTGGTATTGAACCTATGAGCCTTAACATTA
131 AGAGCTTTTAACTCTCACTAACTGTTTGGGGGGCTGCGGTATTAAACCTATGAGCCTTAACATTA
45406158 CATTTGGGAGCCTTAGCT
196 CATTTGGGAGCCTTAGCT
* *
45406176 CTCGCTAACTGTT-TCGGAGGCTGCGGTATTTTACCTACGAGCCTT-ATATTACAACTGAGAGCT
1 CTCGCTAACTATTCT-GGAGGCTGCGGTATTTTACCTACGAGCCTTAACATTACAACTGAGAGCT
* * *
45406239 TTAAACTCTTGCTAACTATTTTGG-GGCTATGATATTAAACTTACAAGCCTTAATAATGACAGCT
65 TTAAACTCTCGCTAACTATTTGGGAGGCTATGATATTAAACCTACAAGCCTTAATAATGACAGCT
* * ** * * *
45406303 GAGAGCTTTTAACTCTCGCTAACTGTTTGGTGGGCTGCGGTATTAAACCTGCGAGTCTTAATAAT
130 GAGAGCTTTTAACTCTCACTAACTGTTTGGGGGGCTGCGGTATTAAACCTATGAGCCTTAACATT
* * * *
45406368 -GAGTTGGGAGCTTTTAACT
195 ACATTTGGGAGC-CTTAGCT
* * * * ** * *
45406387 CTCGCTAACTATT-TGGGGGGCTACAGTACTTTACCTATTAGCCTTAATCTAATA-GA-TGAGAG
1 CTCGCTAACTATTCT-GGAGGCTGCGGTATTTTACCTACGAGCCTTAA-C-ATTACAACTGAGAG
* *
45406449 CTTTGAACTCTCGCTAACCATTTG
63 CTTTAAACTCTCGCTAACTATTTG
45406473 AAGGCTACGG
Statistics
Matches: 248, Mismatches: 44, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
210 9 0.04
211 131 0.53
212 64 0.26
213 41 0.17
214 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (213 bp):
CTCGCTAACTATTCTGGAGGCTGCGGTATTTTACCTACGAGCCTTAACATTACAACTGAGAGCTT
TAAACTCTCGCTAACTATTTGGGAGGCTATGATATTAAACCTACAAGCCTTAATAATGACAGCTG
AGAGCTTTTAACTCTCACTAACTGTTTGGGGGGCTGCGGTATTAAACCTATGAGCCTTAACATTA
CATTTGGGAGCCTTAGCT
Found at i:45406447 original size:141 final size:139
Alignment explanation
Indices: 45406024--45406466 Score: 385
Period size: 141 Copynumber: 3.1 Consensus size: 139
45406014 ACAACTGGGG
* * *
45406024 GCTTTGAACTCTCGCTAACTATTTGGGAGGCTGTGGTATTGAACCTACGAGCCTTAATAATGACA
1 GCTTTGAACTCTCGCTAACTGTTTGGG-GGCTGCGGTATTAAACCTACGAGCCTTAATAATG--A
* * * ** * *
45406089 GTTGAGAGCTTTTAACTCTCACTAATTGTTTGGGGGGCTGTGGTATTGAACCTATGAGCCTTAA-
63 GTTGAGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCT-AAGTATTAAACCTATAAGCCTTAAT
* * *
45406153 C-ATTACATTTGGGA
127 CTAATAGA--TGAGA
* * * ** * * *
45406167 GCCTT-AGCTCTCGCTAACTGTTTCGGAGGCTGCGGTATTTTACCTACGAGCCTT-ATATTACAA
1 GCTTTGAACTCTCGCTAACTGTTT-GGGGGCTGCGGTATTAAACCTACGAGCCTTAATAAT-GAG
* * * * * * *
45406230 CTGAGAGCTTTAAACTCTTGCTAACTATTT-TGGGGCTATGATATTAAACTTACAAGCCTTAATA
64 TTGAGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTAAG-TATTAAACCTATAAGCCTTAAT-
* * * *
45406294 ATGACAGCTGAGA
127 CTAATAGATGAGA
* * *
45406307 GCTTTTAACTCTCGCTAACTGTTTGGTGGGCTGCGGTATTAAACCTGCGAGTCTTAATAATGAGT
1 GCTTTGAACTCTCGCTAACTGTTTGG-GGGCTGCGGTATTAAACCTACGAGCCTTAATAATGAGT
* * *
45406372 TGGGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTACAGTACTT-TACCTATTAGCCTTAATC
65 TGAGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTA-AGTA-TTAAACCTATAAGCCTTAATC
45406436 TAATAGATGAGA
128 TAATAGATGAGA
45406448 GCTTTGAACTCTCGCTAAC
1 GCTTTGAACTCTCGCTAAC
45406467 CATTTGAAGG
Statistics
Matches: 233, Mismatches: 55, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
138 1 0.00
139 23 0.10
140 35 0.15
141 98 0.42
142 67 0.29
143 9 0.04
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (139 bp):
GCTTTGAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTACGAGCCTTAATAATGAGTT
GAGAGCTTTTAACTCTCGCTAACTATTTGGGGGGCTAAGTATTAAACCTATAAGCCTTAATCTAA
TAGATGAGA
Found at i:45408650 original size:25 final size:25
Alignment explanation
Indices: 45408596--45408663 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
45408586 GCGATAAACA
* * *
45408596 GTAAGCTCCTCCGAGCTGAATATTG
1 GTAAGCTCATACGAGCTGAATATCG
*
45408621 ATAAGCTCATACGAGCTGCAA-ATCG
1 GTAAGCTCATACGAGCTG-AATATCG
*
45408646 GTAAGCTCATATGAGCTG
1 GTAAGCTCATACGAGCTG
45408664 TGGTGAGTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 34 0.94
26 2 0.06
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTGAATATCG
Found at i:45416638 original size:43 final size:43
Alignment explanation
Indices: 45416565--45416712 Score: 206
Period size: 43 Copynumber: 3.4 Consensus size: 43
45416555 GAAGCACCGT
* * * *
45416565 TAAAGAACGTGACCTTTAATGGTGCTTTTCACACAGATGCCGC
1 TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
* ** * *
45416608 TGAAGAATGTGACCTTTAGTGGCGCCTTTCACACAAATGCCAC
1 TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
45416651 TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
1 TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
*
45416694 TAAATAACATGACCTTTAG
1 TAAAGAACATGACCTTTAG
45416713 CTGCACTTCT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 92 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
TAAAGAACATGACCTTTAGTGGCGCTTTTCACACAAATGCCGC
Found at i:45417567 original size:13 final size:14
Alignment explanation
Indices: 45417541--45417569 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
45417531 ACTAACGACG
45417541 AATTAAACCATTAT
1 AATTAAACCATTAT
45417555 AATTAAA-CATTAT
1 AATTAAACCATTAT
45417568 AA
1 AA
45417570 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:45419398 original size:40 final size:40
Alignment explanation
Indices: 45419353--45419482 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
45419343 CGGAATACAA
45419353 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
45419393 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
45419433 CCGGATGTAGCCACTAGCAC-AATTTCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
45419473 CCGGATATAA
1 CCGGATATAA
45419483 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:45422923 original size:40 final size:40
Alignment explanation
Indices: 45422868--45423045 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
45422858 TGGATGATAA
* * *
45422868 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
45422908 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
45422948 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
45422988 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
45423028 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
45423046 TACGTGGCTT
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.13
40 111 0.87
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:45424762 original size:56 final size:56
Alignment explanation
Indices: 45424701--45424812 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
45424691 CTTAAAAAAC
45424701 ACAAGTTAGAAAGTAAATATAAATGAAACTTAAACCAAACAAGTCTCTAGTGGTGT
1 ACAAGTTAGAAAGTAAATATAAATGAAACTTAAACCAAACAAGTCTCTAGTGGTGT
45424757 ACAAGTTAGAAAGTAAATATAAATGAAACTTAAACCAAACAAGTCTCTAGTGGTGT
1 ACAAGTTAGAAAGTAAATATAAATGAAACTTAAACCAAACAAGTCTCTAGTGGTGT
45424813 TTCGGAGTAC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.25
Consensus pattern (56 bp):
ACAAGTTAGAAAGTAAATATAAATGAAACTTAAACCAAACAAGTCTCTAGTGGTGT
Found at i:45427792 original size:30 final size:30
Alignment explanation
Indices: 45427719--45427826 Score: 153
Period size: 30 Copynumber: 3.6 Consensus size: 30
45427709 CTCAACAAAT
* *
45427719 ACTGGGCCGAAGCCTTTGCATTATTCATGTC
1 ACTGGGCCGAAGCCTTTTCATTA-TCATATC
* *
45427750 ACTAGGCTGAAGCCTTTTCATTATCATATC
1 ACTGGGCCGAAGCCTTTTCATTATCATATC
45427780 ACTGGGCCGAAGCCTTTTCATTATCATATC
1 ACTGGGCCGAAGCCTTTTCATTATCATATC
**
45427810 ACTGGGTTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
45427827 ACTGTAAACG
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
30 49 0.71
31 20 0.29
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (30 bp):
ACTGGGCCGAAGCCTTTTCATTATCATATC
Found at i:45428081 original size:25 final size:25
Alignment explanation
Indices: 45428047--45428117 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
45428037 CTCTTTTAAT
*
45428047 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
45428072 AACTGGGGCAAAACCCTTTTCGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
45428097 AACTAGGGCAAAAGCCCTTTT
1 AACTAGGGC-AAAGCCCTTTT
45428118 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 30 0.75
26 10 0.25
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:45435018 original size:40 final size:39
Alignment explanation
Indices: 45434826--45434987 Score: 281
Period size: 39 Copynumber: 4.2 Consensus size: 39
45434816 TGTGTATGAA
*
45434826 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
45434865 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
45434904 TGTGCGAGTT-TGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
45434942 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
45434982 TGTGCG
1 TGTGCG
45434988 GGTTACCATA
Statistics
Matches: 118, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
38 38 0.32
39 63 0.53
40 17 0.14
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:45435040 original size:80 final size:77
Alignment explanation
Indices: 45434843--45435042 Score: 222
Period size: 77 Copynumber: 2.6 Consensus size: 77
45434833 ATTGTGATAT
** *
45434843 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
** *
45434908 CGAGTTTGATAT
66 CGAGTTCCATAA
** * * *
45434920 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
*
45434985 GCGGGTTACCATAA
65 GCGAGTT-CCATAA
* **
45434999 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGG
45435043 TAAACTCCGA
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
77 48 0.45
78 20 0.19
79 12 0.11
80 26 0.24
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGTTCCATAA
Found at i:45442926 original size:40 final size:39
Alignment explanation
Indices: 45442733--45442895 Score: 290
Period size: 39 Copynumber: 4.2 Consensus size: 39
45442723 TGTGTATGAA
*
45442733 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
45442772 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
45442811 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
45442850 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
45442890 TGTGCG
1 TGTGCG
45442896 GGTTACCATA
Statistics
Matches: 120, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 103 0.86
40 17 0.14
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:45442953 original size:79 final size:78
Alignment explanation
Indices: 45442750--45442964 Score: 227
Period size: 78 Copynumber: 2.7 Consensus size: 78
45442740 ATTGTGATAT
** * *
45442750 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
*** *
45442815 CGAGTTGTGATAT
66 CGAGTTACCATAA
** * *
45442828 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
*
45442893 GCGGGTTACCATAA
65 GCGAGTTACCATAA
* ** *
45442907 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
45442965 TATGTGATTT
Statistics
Matches: 119, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
78 49 0.41
79 45 0.38
80 24 0.20
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGTTACCATAA
Found at i:45446796 original size:30 final size:32
Alignment explanation
Indices: 45446726--45446808 Score: 120
Period size: 30 Copynumber: 2.7 Consensus size: 32
45446716 TCAATCTCAA
45446726 CATAT-ACTGGGCCGAAG-CTTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTTGCATTATT
*
45446756 CATGTCACTGGGCCGAAGCCTTTT-CATTA-T
1 CATATCACTGGGCCGAAGCCTTTTGCATTATT
*
45446786 CATATCACTGGGCCAAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
45446809 ACTGTAAACG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
30 26 0.54
31 17 0.35
32 5 0.10
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (32 bp):
CATATCACTGGGCCGAAGCCTTTTGCATTATT
Found at i:45447099 original size:26 final size:25
Alignment explanation
Indices: 45447029--45447099 Score: 101
Period size: 25 Copynumber: 2.8 Consensus size: 25
45447019 CTCTTGTAAT
45447029 AACTGGGGCAAAA-CCCATTTTGATA
1 AACTGGGGCAAAAGCCC-TTTTGATA
*
45447054 AACTGGGGC-AAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTT-GATA
45447079 AACTGGGGCAAAAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
45447100 ACACTTCCTC
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
24 7 0.17
25 24 0.57
26 11 0.26
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAAGCCCTTTTGATA
Found at i:45450429 original size:9 final size:9
Alignment explanation
Indices: 45450415--45450529 Score: 64
Period size: 9 Copynumber: 13.2 Consensus size: 9
45450405 ATCTAATGGG
45450415 TGTAAGTTA
1 TGTAAGTTA
45450424 TGTAAGTTA
1 TGTAAGTTA
45450433 TG-ATAGTTA
1 TGTA-AGTTA
45450442 TG-ATAGTTA
1 TGTA-AGTTA
* **
45450451 TGATATGACA
1 TG-TAAGTTA
* *
45450461 TAT-ATTTA
1 TGTAAGTTA
45450469 TGTAAGTTA
1 TGTAAGTTA
*
45450478 TAT-A-TT-
1 TGTAAGTTA
*
45450484 TTTAAGTTA
1 TGTAAGTTA
45450493 TGTAAGTTA
1 TGTAAGTTA
* *
45450502 TAT-ATTTA
1 TGTAAGTTA
*
45450510 TCTAAGTTA
1 TGTAAGTTA
45450519 TGTAAGTTA
1 TGTAAGTTA
45450528 TG
1 TG
45450530 ATATGATATA
Statistics
Matches: 80, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
6 2 0.03
7 3 0.04
8 13 0.16
9 58 0.73
10 3 0.04
11 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.48
Consensus pattern (9 bp):
TGTAAGTTA
Found at i:45450489 original size:15 final size:17
Alignment explanation
Indices: 45450460--45450493 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
45450450 ATGATATGAC
45450460 ATATATTTATGTAAGTT
1 ATATATTTATGTAAGTT
45450477 ATATATTT-T-TAAGTT
1 ATATATTTATGTAAGTT
45450492 AT
1 AT
45450494 GTAAGTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
ATATATTTATGTAAGTT
Found at i:45450505 original size:26 final size:26
Alignment explanation
Indices: 45450466--45450533 Score: 113
Period size: 24 Copynumber: 2.7 Consensus size: 26
45450456 TGACATATAT
45450466 TTATGTAAGTTATATATTT-T-TAAG
1 TTATGTAAGTTATATATTTATCTAAG
45450490 TTATGTAAGTTATATATTTATCTAAG
1 TTATGTAAGTTATATATTTATCTAAG
45450516 TTATGTAAGTTATGATAT
1 TTATGTAAGTTAT-ATAT
45450534 GATATATATT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
24 19 0.46
25 1 0.02
26 17 0.41
27 4 0.10
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (26 bp):
TTATGTAAGTTATATATTTATCTAAG
Found at i:45451878 original size:33 final size:33
Alignment explanation
Indices: 45451838--45451906 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
45451828 ATATATAAGG
45451838 TTATTAGTTATCATTAGACGTATCGTTTTTCTA
1 TTATTAGTTATCATTAGACGTATCGTTTTTCTA
45451871 TTATTAGTTATCATTAGACGTATCGTTTTTCTA
1 TTATTAGTTATCATTAGACGTATCGTTTTTCTA
45451904 TTA
1 TTA
45451907 AGACTAGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52
Consensus pattern (33 bp):
TTATTAGTTATCATTAGACGTATCGTTTTTCTA
Found at i:45453916 original size:21 final size:22
Alignment explanation
Indices: 45453892--45453943 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
45453882 TAATGGATTA
*
45453892 AGGGTTTAGTGTC-TATAGTTT
1 AGGGTTTAGTGGCATATAGTTT
*
45453913 AGGGTTTTA-TGGCATATGGTTT
1 AGGG-TTTAGTGGCATATAGTTT
45453935 AGGGTTTAG
1 AGGGTTTAG
45453944 GGTTTAGAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.19, C:0.04, G:0.33, T:0.44
Consensus pattern (22 bp):
AGGGTTTAGTGGCATATAGTTT
Found at i:45453940 original size:7 final size:7
Alignment explanation
Indices: 45453930--45453972 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
45453920 TATGGCATAT
45453930 GGTTTAG
1 GGTTTAG
45453937 GGTTTAG
1 GGTTTAG
45453944 GGTTTAG
1 GGTTTAG
* *
45453951 AG-TTAT
1 GGTTTAG
45453957 GGTTTAG
1 GGTTTAG
45453964 GGTTTAG
1 GGTTTAG
45453971 GG
1 GG
45453973 ATAAACAGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 4 0.13
7 27 0.87
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:45454344 original size:20 final size:19
Alignment explanation
Indices: 45454319--45454357 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
45454309 AGGCCTTATT
*
45454319 ACAAAAGCTGAAAACCTAAA
1 ACAAAAGCT-AAAACATAAA
*
45454339 ACAAAATCTAAAACATAAA
1 ACAAAAGCTAAAACATAAA
45454358 TGAAGCCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.64, C:0.18, G:0.05, T:0.13
Consensus pattern (19 bp):
ACAAAAGCTAAAACATAAA
Found at i:45454631 original size:27 final size:27
Alignment explanation
Indices: 45454580--45454637 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
45454570 AGAGCATACG
* * *
45454580 TGGGTCAAAGCCCATTACACTATCATT
1 TGGGTCAAAGCCCATAACACAATCAAT
* *
45454607 TGGGTCACAGCCCATAACAGAATCAAT
1 TGGGTCAAAGCCCATAACACAATCAAT
45454634 TGGG
1 TGGG
45454638 CCTAGCCCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (27 bp):
TGGGTCAAAGCCCATAACACAATCAAT
Found at i:45455094 original size:22 final size:22
Alignment explanation
Indices: 45455046--45455105 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
45455036 GTAAATACGT
45455046 TTGGCACAAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* ** * *
45455068 ATGGCACAAAGCCATTTTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
45455090 TTGGCACAGAGCCATA
1 TTGGCACAAAGCCATA
45455106 ATCAGATTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:45455490 original size:27 final size:27
Alignment explanation
Indices: 45455458--45455625 Score: 126
Period size: 27 Copynumber: 6.2 Consensus size: 27
45455448 CAAAACAGTC
** *
45455458 ATTTTACCCTATAGGGGTATTTTGGTA
1 ATTTTACAATATAGGGGTATTTCGGTA
* * *
45455485 ATTTTACACTATAAGGGTATTTCAGTA
1 ATTTTACAATATAGGGGTATTTCGGTA
* * * * * **
45455512 ATATTACACTACAAGGGTATTTAGAAA
1 ATTTTACAATATAGGGGTATTTCGGTA
* * *
45455539 AATTTACAA-ATCGGGGGTATTTTGGTA
1 ATTTTACAATAT-AGGGGTATTTCGGTA
* *
45455566 ATTTTACAATCT-GAGGGTATTTCGATA
1 ATTTTACAATATAG-GGGTATTTCGGTA
45455593 ATTTTACAA-ATCAGGGGTATTTCGGTA
1 ATTTTACAATAT-AGGGGTATTTCGGTA
45455620 ATTTTA
1 ATTTTA
45455626 AAAATCAGGA
Statistics
Matches: 111, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
26 3 0.03
27 106 0.95
28 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
ATTTTACAATATAGGGGTATTTCGGTA
Found at i:45455622 original size:54 final size:54
Alignment explanation
Indices: 45455472--45455625 Score: 159
Period size: 54 Copynumber: 2.9 Consensus size: 54
45455462 TACCCTATAG
* * * * * * *
45455472 GGGTATTTTGGTAATTTTACACTAT-AAGGGTATTTCAGTAATATTACACTACAA
1 GGGTATTTAGATAATTTTACA-AATCAGGGGTATTTCGGTAATTTTACAATACAA
* * * * *
45455526 GGGTATTTAGAAAAATTTACAAATCGGGGGTATTTTGGTAATTTTACAAT-CTGA
1 GGGTATTTAGATAATTTTACAAATCAGGGGTATTTCGGTAATTTTACAATAC-AA
*
45455580 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGGTAATTTTA
1 GGGTATTTAGATAATTTTACAAATCAGGGGTATTTCGGTAATTTTA
45455626 AAAATCAGGA
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
53 3 0.04
54 78 0.96
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTAGATAATTTTACAAATCAGGGGTATTTCGGTAATTTTACAATACAA
Found at i:45457025 original size:19 final size:20
Alignment explanation
Indices: 45457001--45457038 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45456991 GGTACCACCA
45457001 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
45457020 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
45457039 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:45457425 original size:46 final size:46
Alignment explanation
Indices: 45457263--45457432 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
45457253 AACCCGCCCC
* * *
45457263 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCA
* * * * *
45457309 TAAATGAACTCGGACTCAACTCAGCGAGTTGGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
45457357 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
45457402 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
45457433 AGATGCTCAA
Statistics
Matches: 100, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 53 0.53
47 27 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:45457438 original size:93 final size:93
Alignment explanation
Indices: 45457268--45457438 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
45457258 GCCCCTAAGT
* *
45457268 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
**
45457333 CGAGTTGGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * *
45457361 GAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
45457425 ACGAGTTCAGATGC
65 ACGAGTTCAGATGC
45457439 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:45457895 original size:30 final size:30
Alignment explanation
Indices: 45457861--45457920 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45457851 ATTTAATACG
45457861 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
45457891 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
45457921 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:45461916 original size:18 final size:18
Alignment explanation
Indices: 45461893--45461930 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
45461883 ATGAATGAGT
45461893 AGAACCAGGATCAATCAA
1 AGAACCAGGATCAATCAA
45461911 AGAACCAGGATCAATCAA
1 AGAACCAGGATCAATCAA
45461929 AG
1 AG
45461931 CAATAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.21, G:0.18, T:0.11
Consensus pattern (18 bp):
AGAACCAGGATCAATCAA
Found at i:45464471 original size:19 final size:20
Alignment explanation
Indices: 45464447--45464484 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45464437 GGTACCACCA
45464447 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
45464466 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
45464485 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:45464875 original size:92 final size:93
Alignment explanation
Indices: 45464714--45464883 Score: 272
Period size: 92 Copynumber: 1.8 Consensus size: 93
45464704 GCCCCTAAGT
* *
45464714 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
45464779 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
45464807 GAACTCGGACTCAACTCAACGAGTTC-GGACATT-GCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
45464870 ACGAGTTTGGATGC
65 ACGAGTTCGGATGC
45464884 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
92 43 0.61
93 28 0.39
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45465340 original size:30 final size:30
Alignment explanation
Indices: 45465306--45465365 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45465296 ATTTAATACG
45465306 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
45465336 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
45465366 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:45468606 original size:41 final size:41
Alignment explanation
Indices: 45468553--45468710 Score: 181
Period size: 41 Copynumber: 3.8 Consensus size: 41
45468543 TTTTGTTGCA
* * *
45468553 TTTGGACTAAAAACGCTACTATTGCTTAGCTTTTAGCGGTG
1 TTTGGACTAAAAACGCCACTATTGCTAAACTTTTAGCGGTG
* * * * * **
45468594 TTTGAACAAAAAATGCCACTATTGCTAAATTTTTAGTGGCA
1 TTTGGACTAAAAACGCCACTATTGCTAAACTTTTAGCGGTG
* *
45468635 TTTGGACTAAAAATGCCACTATTGCTCAACTTTTAGCGGTG
1 TTTGGACTAAAAACGCCACTATTGCTAAACTTTTAGCGGTG
* *
45468676 TTTGGTCTAAAAACGCCACTATTGCTCAACGTTTT
1 TTTGGACTAAAAACGCCACTATTGCTAAAC-TTTT
45468711 GCAACATTTT
Statistics
Matches: 97, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
41 93 0.96
42 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (41 bp):
TTTGGACTAAAAACGCCACTATTGCTAAACTTTTAGCGGTG
Found at i:45468646 original size:82 final size:82
Alignment explanation
Indices: 45468509--45468704 Score: 259
Period size: 82 Copynumber: 2.4 Consensus size: 82
45468499 CATATTCGTC
* * * * *
45468509 GTGTTTGGATAAAAAATGCCACTATAGCTCAACCTTTTGTTGCATTTGGACTAAAAACGCTACTA
1 GTGTTTGGACAAAAAATGCCACTATTGCTCAAACTTTTGTGGCATTTGGACTAAAAACGCCACTA
* *
45468574 TTGCTTAGCTTTTAGCG
66 TTGCTCAACTTTTAGCG
* * *
45468591 GTGTTTGAACAAAAAATGCCACTATTGCT-AAATTTTTAGTGGCATTTGGACTAAAAATGCCACT
1 GTGTTTGGACAAAAAATGCCACTATTGCTCAAACTTTT-GTGGCATTTGGACTAAAAACGCCACT
45468655 ATTGCTCAACTTTTAGCG
65 ATTGCTCAACTTTTAGCG
* * *
45468673 GTGTTTGGTCTAAAAACGCCACTATTGCTCAA
1 GTGTTTGGACAAAAAATGCCACTATTGCTCAA
45468705 CGTTTTGCAA
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 6 0.06
82 90 0.92
83 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (82 bp):
GTGTTTGGACAAAAAATGCCACTATTGCTCAAACTTTTGTGGCATTTGGACTAAAAACGCCACTA
TTGCTCAACTTTTAGCG
Found at i:45476700 original size:44 final size:44
Alignment explanation
Indices: 45476631--45476787 Score: 153
Period size: 43 Copynumber: 3.6 Consensus size: 44
45476621 TGTGTTTTCG
** *
45476631 TGTAAGACCACGTCTCAGACGTTGGCATCGAT-TTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATT-TGATTTACA
* *
45476675 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTACA
* * * *
45476717 TGTAAGACC-CTATTTGCGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTTACA
* * *
45476760 TGTATGGCCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
45476788 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 27 0.30
43 34 0.38
44 29 0.32
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTACA
Found at i:45476752 original size:43 final size:44
Alignment explanation
Indices: 45476653--45476763 Score: 131
Period size: 42 Copynumber: 2.6 Consensus size: 44
45476643 TCTCAGACGT
* * *
45476653 TGGCATCGAT-TTATGATTTACATGTAAGACCATGTCTGGGACAT
1 TGGCATCGATATT-TGATTTACATGTAAGACCATATCTGCGACAG
* * *
45476697 TGGCATCG-TATTTGATTT-CGTGTAAGACCCTATTTGCGACAG
1 TGGCATCGATATTTGATTTACATGTAAGACCATATCTGCGACAG
45476739 TGGCATCGATATTTGA-TTACATGTA
1 TGGCATCGATATTTGATTTACATGTA
45476764 TGGCCACGTC
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
42 28 0.49
43 19 0.33
44 10 0.18
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (44 bp):
TGGCATCGATATTTGATTTACATGTAAGACCATATCTGCGACAG
Found at i:45483210 original size:25 final size:25
Alignment explanation
Indices: 45483182--45483236 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
45483172 AGCTTCTCCA
*
45483182 AGCTG-AATATCGGTAAGCTTATACG
1 AGCTGCAA-ATCGGTAAGCTCATACG
*
45483207 AGCTGCAAATTGGTAAGCTCATACG
1 AGCTGCAAATCGGTAAGCTCATACG
45483232 AGCTG
1 AGCTG
45483237 TGGTGAGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 25 0.93
26 2 0.07
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (25 bp):
AGCTGCAAATCGGTAAGCTCATACG
Found at i:45485335 original size:17 final size:17
Alignment explanation
Indices: 45485313--45485348 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
45485303 CGAAGACAAG
45485313 AAAACCAAACTTGTTGA
1 AAAACCAAACTTGTTGA
45485330 AAAACCAAACTTGTTGA
1 AAAACCAAACTTGTTGA
45485347 AA
1 AA
45485349 TCTAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (17 bp):
AAAACCAAACTTGTTGA
Found at i:45486035 original size:9 final size:8
Alignment explanation
Indices: 45486017--45486049 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
45486007 TTTATTATTT
45486017 TTAAAATA
1 TTAAAATA
45486025 TTAAAATTA
1 TTAAAA-TA
45486034 TTAAAATA
1 TTAAAATA
45486042 TTAAAATA
1 TTAAAATA
45486050 AAATATTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TTAAAATA
Found at i:45486208 original size:14 final size:15
Alignment explanation
Indices: 45486184--45486263 Score: 51
Period size: 15 Copynumber: 5.2 Consensus size: 15
45486174 ATGTTATTGA
45486184 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
45486197 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
45486212 AAATATTTATTACAATTAT
1 AAATA-TT-TT--AATAAT
45486231 AAATATATTT-ATAAT
1 AAATAT-TTTAATAAT
*
45486246 AAATTTTTGTAAT-AT
1 AAATATTT-TAATAAT
45486261 AAA
1 AAA
45486264 GGTTAAAATA
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
13 4 0.08
14 8 0.15
15 21 0.40
16 4 0.08
17 2 0.04
18 3 0.06
19 11 0.21
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:45489049 original size:13 final size:13
Alignment explanation
Indices: 45489031--45489056 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45489021 TATCCCTAAG
45489031 TTTATCTTTACAT
1 TTTATCTTTACAT
45489044 TTTATCTTTACAT
1 TTTATCTTTACAT
45489057 GCATACTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTATCTTTACAT
Found at i:45504495 original size:46 final size:46
Alignment explanation
Indices: 45504445--45504572 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 46
45504435 ACCTCTCGTA
* *
45504445 GCCGATGTATGTCCCAAACATGTCTTACACTAGCACTCGT-TTCAAT
1 GCCGATGTATGTCCCAAACATGTCTTACACTAGCACTCATAAT-AAT
* * * **
45504491 GCCGATGCTATATCCCAAACATGGTCTTACACTGGCTCTCATAATGTT
1 GCCGATG-TATGTCCCAAACAT-GTCTTACACTAGCACTCATAATAAT
* *
45504539 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGTATGTCCCAAACATGTCTTACACTAGC
45504573 TCACACAAGT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 19 0.28
47 24 0.35
48 24 0.35
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
GCCGATGTATGTCCCAAACATGTCTTACACTAGCACTCATAATAAT
Found at i:45510624 original size:43 final size:43
Alignment explanation
Indices: 45510532--45510626 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 43
45510522 ACAAGATTTC
** * **
45510532 CGATATGTGTTCTTGTGTAAGACCATGTCTAGGACGTTGGCAT
1 CGATATGTGTTCTCATGTAAGACCATATCTAGGACGTTCCCAT
* * *
45510575 CAATATGTGTTCTCATGTAAGACCCTATCTGGGACAG-TCCCAT
1 CGATATGTGTTCTCATGTAAGACCATATCTAGGAC-GTTCCCAT
45510618 CGATATGTG
1 CGATATGTG
45510627 ATTACATGTA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
43 41 0.98
44 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (43 bp):
CGATATGTGTTCTCATGTAAGACCATATCTAGGACGTTCCCAT
Found at i:45510854 original size:19 final size:18
Alignment explanation
Indices: 45510830--45510873 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
45510820 GATACAAATT
45510830 ATATATGATGCAAATGAAA
1 ATATATG-TGCAAATGAAA
* *
45510849 ATATATGTGTATATGAAA
1 ATATATGTGCAAATGAAA
45510867 AGTATAT
1 A-TATAT
45510874 TCGGCCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (18 bp):
ATATATGTGCAAATGAAA
Found at i:45518622 original size:42 final size:43
Alignment explanation
Indices: 45518575--45518684 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 43
45518565 GGATTTTCGG
*
45518575 TATGTGTTCTCATGTAAGACCACGTCTAGG-ACATTGGC-TCGA
1 TATGTGTTCTCATGTAAGACCACGTCT-GGTACAGTGGCATCGA
* * *
45518617 TATGTGTTCTTATGTAAGACC-CTGTCTGGTATAGTGGCATTGA
1 TATGTGTTCTCATGTAAGACCAC-GTCTGGTACAGTGGCATCGA
*
45518660 TATGTGATT-ACATGTAAGACCACGT
1 TATGTG-TTCTCATGTAAGACCACGT
45518685 TTGAGACGTT
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
41 3 0.05
42 30 0.53
43 21 0.37
44 3 0.05
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (43 bp):
TATGTGTTCTCATGTAAGACCACGTCTGGTACAGTGGCATCGA
Found at i:45522963 original size:69 final size:68
Alignment explanation
Indices: 45522884--45523021 Score: 231
Period size: 69 Copynumber: 2.0 Consensus size: 68
45522874 AACTTTCATG
*** *
45522884 TCAACTATATATATAACAAAATATTCAATAAAAGATCATTGGAATGCAATCTCATTGCCTAATTT
1 TCAACTATATATATAACAAAATATTCAATAAAAGATCATCAAAATACAATCTCATTGCCTAATTT
45522949 AGA
66 AGA
45522952 TCAAGCTATATATATAACAAAATATTCAATAAAAGATCATCAAAATACAATCTCATTGCCTAATT
1 TCAA-CTATATATATAACAAAATATTCAATAAAAGATCATCAAAATACAATCTCATTGCCTAATT
45523017 TAGA
65 TAGA
45523021 T
1 T
45523022 TATACGAAAC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
68 4 0.06
69 61 0.94
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (68 bp):
TCAACTATATATATAACAAAATATTCAATAAAAGATCATCAAAATACAATCTCATTGCCTAATTT
AGA
Found at i:45532728 original size:30 final size:30
Alignment explanation
Indices: 45532694--45532756 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
45532684 ACGTATTTTA
45532694 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
45532724 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
45532754 TTG
1 TTG
45532757 CTTGTCAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:45532827 original size:12 final size:12
Alignment explanation
Indices: 45532806--45532839 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
45532796 TATATATTTT
*
45532806 AAAATTATATAA
1 AAAATAATATAA
45532818 AAAATAATATAA
1 AAAATAATATAA
*
45532830 AAATTAATAT
1 AAAATAATAT
45532840 GGGCGGGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:45539397 original size:12 final size:13
Alignment explanation
Indices: 45539380--45539417 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
45539370 ATCCTGGAAT
45539380 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
45539392 ATTAAGAACACATA
1 ATTAAGAACA-AGA
45539406 ATTAAGAACAAG
1 ATTAAGAACAAG
45539418 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:45551763 original size:47 final size:49
Alignment explanation
Indices: 45551690--45551824 Score: 168
Period size: 50 Copynumber: 2.8 Consensus size: 49
45551680 GTATAATGCT
* *
45551690 GATGCCATGTCCCAGACATGGCCTTACACTGGCTCATC-CAT-T-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATATCAAGCC
* * * *
45551737 GATGCAATGTCCCAGACCTGGTCTTACACTGACTCTCACATATCCATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATAT-CAAGCC
*
45551787 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
45551825 TAATGTGGCC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 2 0.03
47 34 0.46
48 1 0.01
50 37 0.50
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCAAGCC
Found at i:45551809 original size:50 final size:48
Alignment explanation
Indices: 45551685--45551860 Score: 173
Period size: 47 Copynumber: 3.7 Consensus size: 48
45551675 ACAAGGTATA
* *
45551685 ATGCTGATGCCATGTCCCAGACATGGCCTTACACTGGCTCATC-CAT-T
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATAT
* * * * *
45551732 AAGTCGATGCAATGTCCCAGACCTGGTCTTACACTGACTCTCACATAT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATAT
* *
45551780 CCATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-AT
1 --ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATAT
* * *
45551829 GTGGCCGACG-CATGTCCTAGACAT-GTCTTACA
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACA
45551861 GTAGCACACA
Statistics
Matches: 108, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
46 10 0.09
47 51 0.47
48 7 0.06
49 2 0.02
50 38 0.35
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATAT
Found at i:45554615 original size:28 final size:29
Alignment explanation
Indices: 45554518--45554615 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
45554508 TCATAAATTG
* *
45554518 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
45554547 GCAC-AAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
45554574 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
45554602 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45554616 GGCTTATTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
27 8 0.14
28 44 0.76
29 6 0.10
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:45559293 original size:17 final size:18
Alignment explanation
Indices: 45559250--45559284 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
45559240 CGAGTTGTTA
45559250 AAAGATTATGAGCTTGTC
1 AAAGATTATGAGCTTGTC
45559268 AAAGATTATGAGCTTGT
1 AAAGATTATGAGCTTGT
45559285 ATTGATTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (18 bp):
AAAGATTATGAGCTTGTC
Found at i:45562298 original size:28 final size:29
Alignment explanation
Indices: 45562200--45562298 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
45562190 TCATAAATTG
* *
45562200 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
45562229 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
45562257 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
45562285 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45562299 GGCTTATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:45572919 original size:29 final size:29
Alignment explanation
Indices: 45572885--45573016 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
45572875 TACTCGATTT
** * *
45572885 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
45572914 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
45572943 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
45572972 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
45573001 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
45573017 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:45580862 original size:29 final size:29
Alignment explanation
Indices: 45580828--45580930 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
45580818 TACTCGATTT
* * *
45580828 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
45580857 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * **
45580886 CGCACACTTAGTGCCATA-TATTTCCAGTA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
45580915 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
45580931 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:45587872 original size:26 final size:27
Alignment explanation
Indices: 45587822--45587873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
45587812 AAATGGTGAC
45587822 CGAAATACCCTCATAGGGTAAAATGAT
1 CGAAATACCCTCATAGGGTAAAATGAT
*
45587849 CGAAATACCCTGA-AGGGTAAAATGA
1 CGAAATACCCTCATAGGGTAAAATGA
45587874 CTTGGGCCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.19
Consensus pattern (27 bp):
CGAAATACCCTCATAGGGTAAAATGAT
Found at i:45587930 original size:27 final size:26
Alignment explanation
Indices: 45587899--45587956 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
45587889 GCCGAAATGG
*
45587899 TGACTGAAATACCCCCATAGGGTAAAA
1 TGACTAAAATA-CCCCATAGGGTAAAA
**
45587926 TGACTAAAATACCCTGTAGGGTAAAA
1 TGACTAAAATACCCCATAGGGTAAAA
45587952 TGACT
1 TGACT
45587957 TGGGCCATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (26 bp):
TGACTAAAATACCCCATAGGGTAAAA
Found at i:45587936 original size:81 final size:81
Alignment explanation
Indices: 45587794--45588036 Score: 389
Period size: 81 Copynumber: 3.0 Consensus size: 81
45587784 TTAGGCTGTT
*
45587794 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCTCATAGGGTAAAATGA-TCGAAATACC
1 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCCCATAGGGTAAAATGACT-GAAATACC
*
45587858 CTGAAGGGTAAAATGAC
65 CTGTAGGGTAAAATGAC
* *
45587875 TTGGGCCATGTTAGGCCGAAATGGTGACTGAAATACCCCCATAGGGTAAAATGACTAAAATACCC
1 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCCCATAGGGTAAAATGACTGAAATACCC
45587940 TGTAGGGTAAAATGAC
66 TGTAGGGTAAAATGAC
* * * *
45587956 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCCTATAGGGCAAAATGACCGAAATACCT
1 TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCCCATAGGGTAAAATGACTGAAATACCC
*
45588021 TGTAGTGTAAAATGAC
66 TGTAGGGTAAAATGAC
45588037 CAAAATACCC
Statistics
Matches: 150, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
81 149 0.99
82 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (81 bp):
TTGGGCCATGTTAGGCCGAAATGGTGACCGAAATACCCCCATAGGGTAAAATGACTGAAATACCC
TGTAGGGTAAAATGAC
Found at i:45588015 original size:27 final size:27
Alignment explanation
Indices: 45587980--45588063 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
45587970 GCCGAAATGG
*
45587980 TGACCGAAATACCCCTATAGGGCAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * *
45588007 TGACCGAAATA-CCTTGTAGTGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* *
45588033 TGACCAAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
45588060 TGAC
1 TGAC
45588064 TGTATGAACC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.45
27 26 0.55
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.19
Consensus pattern (27 bp):
TGACCGAAATACCCCTATAGGGTAAAA
Found at i:45588106 original size:27 final size:27
Alignment explanation
Indices: 45588053--45588118 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
45588043 ACCCCCATAG
45588053 GGTAAAATGACTGTATGAACCCCGTAA
1 GGTAAAATGACTGTATGAACCCCGTAA
* *
45588080 GGTAAAATGACTGTAT-TACCCTTGTAA
1 GGTAAAATGACTGTATGAACCC-CGTAA
45588107 GGTAAAATGACT
1 GGTAAAATGACT
45588119 AATTTGCCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 4 0.11
27 32 0.89
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACTGTATGAACCCCGTAA
Found at i:45591739 original size:39 final size:39
Alignment explanation
Indices: 45591628--45591811 Score: 260
Period size: 39 Copynumber: 4.6 Consensus size: 39
45591618 TCGTTCAAAC
* * ** * *
45591628 GCCTTCGGGACATAGCCCGGTTTATGGTAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGG-ATATCATAACTCGCACAATT
* *
45591669 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
45591709 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
*
45591748 GCCTTCGGGCTTAGCCCGGATATCATAACTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
45591787 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
45591812 CAATTCCACA
Statistics
Matches: 132, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 91 0.69
40 23 0.17
41 18 0.14
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:45599809 original size:39 final size:39
Alignment explanation
Indices: 45599697--45599890 Score: 271
Period size: 39 Copynumber: 4.9 Consensus size: 39
45599687 TCGTTCAAAC
* * ** * *
45599697 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
45599737 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
45599777 GCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
45599816 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
* *
45599855 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
45599891 TTCATACACA
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 41 0.29
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:45601806 original size:47 final size:45
Alignment explanation
Indices: 45601615--45601823 Score: 140
Period size: 46 Copynumber: 4.5 Consensus size: 45
45601605 TGTGTAAGCC
* ** * *
45601615 AGTGTAAGACCATGTTTGCTACAGGGCATCGACATTGAGATG-AGTGCT
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGAC-TCGAGATGTA--GCT
* * * *
45601663 AGTGTAAGA-CATGTTTGGGACATGCATCAGCCTCGAGACGTATACT
1 AGTGTAAGACCATGTCTGGGACATGCATC-GACTCGAGATGTA-GCT
* * * *
45601709 AGTGTAAGA-CATGTCTAGGACATGCGTCGGCTACGAAATGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATG-TAGCT
* *
45601754 CAGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGATGTGAGCT
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGT-AGCT
*
45601802 AGTGTAA-ACCGTGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
45601824 CGGCATCGGC
Statistics
Matches: 132, Mismatches: 20, Indels: 20
0.77 0.12 0.12
Matches are distributed among these distances:
45 4 0.03
46 68 0.52
47 43 0.33
48 17 0.13
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGTAGCT
Found at i:45604775 original size:46 final size:46
Alignment explanation
Indices: 45604725--45604898 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
45604715 TCATCTTATA
* *
45604725 GCCGATGCATGTCTCAGACATGTCTTACACTAGC-TTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCGAG
* *
45604771 GCCGATGCATGTCCCATACATGTCTTACACTAGCACTCGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAG
* ** * * * * *
45604817 GCCGATGCCGTGTCGAAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGT-CTCGAG
* * * *
45604865 GCTGATGCATGTCCCAAACAAGTCTTACCCTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
45604899 CCATAATAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 58 0.57
47 20 0.20
48 23 0.23
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAG
Found at i:45605373 original size:25 final size:25
Alignment explanation
Indices: 45605339--45605395 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
45605329 ATGCAAACTG
45605339 GTCCTTTTTAGGTATTTTCATGAAA
1 GTCCTTTTTAGGTATTTTCATGAAA
45605364 GTCCTTTTTAGGTATTTTCATGAAA
1 GTCCTTTTTAGGTATTTTCATGAAA
*
45605389 ATCCTTT
1 GTCCTTT
45605396 CACCAAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49
Consensus pattern (25 bp):
GTCCTTTTTAGGTATTTTCATGAAA
Found at i:45613874 original size:21 final size:21
Alignment explanation
Indices: 45613845--45613899 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
45613835 GTTCGCTTCT
*
45613845 CCCAGGCCCGTGTGTGCAAGC
1 CCCACGCCCGTGTGTGCAAGC
45613866 CCCACGCCCGTGTGTGCAAGC
1 CCCACGCCCGTGTGTGCAAGC
45613887 CCCACGCCCGTGT
1 CCCACGCCCGTGT
45613900 TAATTTAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.13, C:0.44, G:0.29, T:0.15
Consensus pattern (21 bp):
CCCACGCCCGTGTGTGCAAGC
Found at i:45613962 original size:55 final size:55
Alignment explanation
Indices: 45613889--45614029 Score: 169
Period size: 55 Copynumber: 2.6 Consensus size: 55
45613879 GTGCAAGCCC
** *
45613889 CACGCCCGTGTTAATTTAACAGGTTCGACCACGAG-TGTTCCACACGGGCGTGTCGA
1 CACGCCCGTGTTGTTTTAACAGGTTCGACCACG-GTTCTTCCACACGGGCGTGTC-A
* *
45613945 -ACGCCCGTGTTGTTTTAACATGTTCGCCCACGGTTCTTCCACACGGGCGTGTCA
1 CACGCCCGTGTTGTTTTAACAGGTTCGACCACGGTTCTTCCACACGGGCGTGTCA
* ** *
45613999 CACGCCCATGTTGTTTTGGCAGGCTCGACCA
1 CACGCCCGTGTTGTTTTAACAGGTTCGACCA
45614030 TGGCCATATT
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
54 2 0.03
55 70 0.97
ACGTcount: A:0.18, C:0.30, G:0.26, T:0.26
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTAACAGGTTCGACCACGGTTCTTCCACACGGGCGTGTCA
Found at i:45615734 original size:29 final size:28
Alignment explanation
Indices: 45615701--45615799 Score: 119
Period size: 29 Copynumber: 3.5 Consensus size: 28
45615691 GACGAGAATG
* *
45615701 GCACTAAGTGTGCAAGCTGGAAATATATG
1 GCACTAAGTGTGCGAGCT-GAAATATATA
*
45615730 GCACTAAGTGTGCGAGCTCAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAA-TATATA
* * *
45615759 GCACTATGTGTGCGAGCTG-ATTTTATA
1 GCACTAAGTGTGCGAGCTGAAATATATA
45615786 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45615800 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 18 0.30
28 4 0.07
29 39 0.64
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGCTGAAATATATA
Found at i:45623953 original size:46 final size:46
Alignment explanation
Indices: 45623866--45623987 Score: 131
Period size: 46 Copynumber: 2.6 Consensus size: 46
45623856 CATCTTATAA
* * * *
45623866 CCGATACATGTCCCAAACATGTGTTACACTAACTTATGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCGAGG
*
45623912 CCGATGCATGTCCCAGACATGTCTTACACTAGCAC-T-CGTCTCGATG
1 CCGATGCATGTCCCAGACATGTCTTACACTA--ACTTACGTCTCGAGG
* *
45623958 CTGATGCTGTGTCCCAGACATGGTCTTACA
1 CCGATGC-ATGTCCCAGACAT-GTCTTACA
45623988 TTGGCTCTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
46 42 0.65
47 13 0.20
48 10 0.15
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCGAGG
Found at i:45629492 original size:40 final size:40
Alignment explanation
Indices: 45629435--45629619 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
45629425 TCGAATGATG
* * * *
45629435 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
45629475 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
45629515 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45629555 TCCGG-GTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
45629595 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
45629620 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 90 0.69
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45629619 original size:79 final size:80
Alignment explanation
Indices: 45629435--45629619 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 80
45629425 TCGAATGATG
* *
45629435 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
45629500 GTGCGAGTTACTAAA
66 GTGCGAGCTACTAAA
* * * *
45629515 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTAAG-TCCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGG-ATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
45629576 TTTGTGCGAGCTACTATAA
63 TTTGTGCGAGCTACTA-AA
*
45629595 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGG-ATTTG
45629620 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 2 0.02
79 48 0.53
80 32 0.36
81 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTAAA
Found at i:45629633 original size:40 final size:39
Alignment explanation
Indices: 45629488--45629638 Score: 112
Period size: 40 Copynumber: 3.8 Consensus size: 39
45629478 GGACTAAGAT
** * *
45629488 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGG-GTAAG-TC
** *
45629528 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGTAAGTC
** *
45629567 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGG-TAAGTC
* *
45629607 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
45629639 TTAAACTCCG
Statistics
Matches: 100, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
38 1 0.01
39 35 0.35
40 64 0.64
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGTAAGTC
Found at i:45629637 original size:79 final size:80
Alignment explanation
Indices: 45629469--45629638 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 80
45629459 GTGCTAAGTG
*
45629469 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
**
45629534 GCATTTGTGCGAGTT
66 GCATTTGAACGAGTT
* * * *
45629549 ACTAAATCCGG-GTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCG
1 ACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCG
*
45629610 AAGGTATTTGAACGAG-T
63 AAGGCATTTGAACGAGTT
45629627 AGCTATATCCGG
1 A-CTATATCCGG
45629639 TTAAACTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
78 4 0.05
79 61 0.79
80 12 0.16
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (80 bp):
ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGTT
Found at i:45637716 original size:40 final size:40
Alignment explanation
Indices: 45637659--45637843 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
45637649 TCGAATGATG
* * *
45637659 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
45637699 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAA-TTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGC-AAGTTACTAAA
*
45637739 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
** * *
45637778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
* * *
45637819 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
45637844 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 37 0.29
40 78 0.61
41 12 0.09
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:45637865 original size:79 final size:78
Alignment explanation
Indices: 45637693--45637878 Score: 191
Period size: 79 Copynumber: 2.3 Consensus size: 78
45637683 GTGCTAAGTG
* * *
45637693 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAATTACTAAATCGGACTAAGATCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAACTACTAAACCGGACTAAGATCCGAAGG
**
45637758 CATTTGTGCGAGTT
65 CATTTGAACGAGTT
* * * *
45637772 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATG-TCCCGA
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTGTGCGAACTACTA-AACCGGACTAAGAT-CCGA
*
45637835 AGGTATTTGAACGAG-T
62 AGGCATTTGAACGAGTT
45637851 AGCTATATCCGGTTAA-ACTCCGAAGGCA
1 A-CTATATCCGGTTAAGA-TCCGAAGGCA
45637879 CGTGATTCGG
Statistics
Matches: 89, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
78 1 0.01
79 53 0.60
80 35 0.39
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTGTGCGAACTACTAAACCGGACTAAGATCCGAAGGC
ATTTGAACGAGTT
Found at i:45639658 original size:29 final size:29
Alignment explanation
Indices: 45639625--45639756 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
45639615 GTGACGAGAT
45639625 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
45639654 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
45639683 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
45639712 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
45639741 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
45639757 GGCTTAAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:45647330 original size:29 final size:29
Alignment explanation
Indices: 45647229--45647322 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
45647219 GTGACGAGAT
*
45647229 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45647258 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
45647287 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
45647316 CGGCACT
1 TGGCACT
45647323 GGGTGTGCGA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:45647347 original size:58 final size:58
Alignment explanation
Indices: 45647225--45647352 Score: 152
Period size: 58 Copynumber: 2.2 Consensus size: 58
45647215 TATGGTGACG
* * * *
45647225 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
45647282 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* *
45647340 GGGTATGGCACTA
1 AGATATGGCACTA
45647353 TGTATGCGGG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
57 3 0.05
58 55 0.93
59 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:45651863 original size:27 final size:27
Alignment explanation
Indices: 45651828--45651965 Score: 152
Period size: 27 Copynumber: 5.1 Consensus size: 27
45651818 GCCGAAATGG
45651828 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
* * *
45651855 TGACTGAAAT-TCCCCATAGGGTAAAT
1 TGACCGAAATACCCCCATAGGGTAAAA
* * *
45651881 TGACCAAAATACCCTCATAAGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
*
45651908 TGACTGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
* * * ** *
45651935 TGATCGTATTACCCCTGTAAGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
45651962 TGAC
1 TGAC
45651966 TGTATTACCC
Statistics
Matches: 89, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
26 22 0.25
27 67 0.75
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (27 bp):
TGACCGAAATACCCCCATAGGGTAAAA
Found at i:45651908 original size:53 final size:54
Alignment explanation
Indices: 45651828--45651967 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
45651818 GCCGAAATGG
* * *
45651828 TGACCGAAATACCCCCATAGGGTAAAATGACTGAAAT-TCCCCATAGGGTAAAT
1 TGACCAAAATACCCCCATAAGGTAAAATGACTGAAATACCCCCATAGGGTAAAT
* *
45651881 TGACCAAAATACCCTCATAAGGTAAAATGACTGAAATACCCCCATAGGGTAAAA
1 TGACCAAAATACCCCCATAAGGTAAAATGACTGAAATACCCCCATAGGGTAAAT
* ** * **
45651935 TGATCGTATTACCCCTGTAAGGTAAAATGACTG
1 TGACCAAAATACCCCCATAAGGTAAAATGACTG
45651968 TATTACCCTT
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 34 0.46
54 40 0.54
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (54 bp):
TGACCAAAATACCCCCATAAGGTAAAATGACTGAAATACCCCCATAGGGTAAAT
Found at i:45651970 original size:27 final size:27
Alignment explanation
Indices: 45651898--45651993 Score: 122
Period size: 27 Copynumber: 3.6 Consensus size: 27
45651888 AATACCCTCA
* * **
45651898 TAAGGTAAAATGACTGAAATACCCCCA
1 TAAGGTAAAATGACTGTATTACCCCTG
*
45651925 TAGGGTAAAATGA-TCGTATTACCCCTG
1 TAAGGTAAAATGACT-GTATTACCCCTG
*
45651952 TAAGGTAAAATGACTGTATTACCCTTG
1 TAAGGTAAAATGACTGTATTACCCCTG
45651979 TAAGGTAAAATGACT
1 TAAGGTAAAATGACT
45651994 TGTTTGCCCT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 58 0.97
28 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
TAAGGTAAAATGACTGTATTACCCCTG
Done.