Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 165 of 345
Found at i:46002908 original size:40 final size:40
Alignment explanation
Indices: 46002861--46002954 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 40
46002851 CGGCTATTTG
*
46002861 TGGCACTTAGTGTGCGATTCGACATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
* * * *
46002901 TGGCACTTAGTGTGCAATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
* *
46002941 CGGCACTTGGTGTG
1 TGGCACTTAGTGTG
46002955 TGAGATATTG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
Found at i:46002982 original size:28 final size:28
Alignment explanation
Indices: 46002942--46003025 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
46002932 GGCTATGTAC
* * *
46002942 GGCACTTGGTGTGTGAGATATTGAGTGT
1 GGCACTTAGTGTGCGAGATATTGAGTAT
46002970 GGCACTTAGTGTGCGAGATATTGAGTAT
1 GGCACTTAGTGTGCGAGATATTGAGTAT
* * *
46002998 GGCGCTTAGTGTGCGAGACATCGAGTAT
1 GGCACTTAGTGTGCGAGATATTGAGTAT
46003026 TCAACAGTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.21, C:0.12, G:0.36, T:0.31
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATTGAGTAT
Found at i:46005035 original size:29 final size:29
Alignment explanation
Indices: 46005001--46005076 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
46004991 TACTCAATCA
* * *
46005001 CGCACACTTAGTGCCATGT-GATTCAAGCC
1 CGCACACTTAGTGCCATATAG-TCCAAACC
* *
46005030 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATAGTCCAAACC
46005059 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
46005077 CATTACAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 39 0.98
30 1 0.03
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTCCAAACC
Found at i:46008855 original size:43 final size:42
Alignment explanation
Indices: 46008706--46008864 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
46008696 TATGTGATAT
* * *
46008706 CGTGTAAGACCATGTCTGGGACGTTGGCATTGACTTTTGTTTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTTTG-ATTA
* * * * *
46008750 CGTGTAAGACCATGTCTGGGACATTGGTATCG-TATCTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTTGATTA
46008792 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TTTGATTA
* *
46008835 CATGTAAGACCACGTATGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
46008865 TGTATATGCT
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
42 31 0.33
43 34 0.36
44 30 0.32
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTTGATTA
Found at i:46019231 original size:26 final size:26
Alignment explanation
Indices: 46019201--46019261 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
46019191 ACACATGGGT
46019201 CATCAAATTTCATTCCAAATTAAAAC
1 CATCAAATTTCATTCCAAATTAAAAC
46019227 CATCAAATTTCATTCCAAATTAAAAC
1 CATCAAATTTCATTCCAAATTAAAAC
46019253 CAATCAAAT
1 C-ATCAAAT
46019262 AGAATCATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 27 0.79
27 7 0.21
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.30
Consensus pattern (26 bp):
CATCAAATTTCATTCCAAATTAAAAC
Found at i:46023027 original size:22 final size:22
Alignment explanation
Indices: 46022996--46023063 Score: 118
Period size: 22 Copynumber: 3.1 Consensus size: 22
46022986 AAACATGTCT
*
46022996 AACCAGGTATTCCATTTGACCA
1 AACCATGTATTCCATTTGACCA
46023018 AACCATGTATTCCATTTGACCA
1 AACCATGTATTCCATTTGACCA
*
46023040 AACCATGTATTTCATTTGACCA
1 AACCATGTATTCCATTTGACCA
46023062 AA
1 AA
46023064 TAATCAACTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (22 bp):
AACCATGTATTCCATTTGACCA
Found at i:46025298 original size:3 final size:3
Alignment explanation
Indices: 46025285--46025362 Score: 120
Period size: 3 Copynumber: 26.0 Consensus size: 3
46025275 ATGTTAGATG
*
46025285 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
46025333 TAT TAT TAT TAC TAC TAT TAT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
46025363 CATACTATTA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:46026619 original size:25 final size:25
Alignment explanation
Indices: 46026591--46026644 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
46026581 ATACATGTAT
* *
46026591 GCTCACTCAAGCTGTAAATCGGTAC
1 GCTCACACAAGCTGTAAATCAGTAC
* * *
46026616 GCTCTCACGAGCTGTAAATCAGTAT
1 GCTCACACAAGCTGTAAATCAGTAC
46026641 GCTC
1 GCTC
46026645 TCACGAGTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (25 bp):
GCTCACACAAGCTGTAAATCAGTAC
Found at i:46026645 original size:25 final size:25
Alignment explanation
Indices: 46026600--46026651 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
46026590 TGCTCACTCA
*
46026600 AGCTGTAAATCGGTACGCTCTCACG
1 AGCTGTAAATCAGTACGCTCTCACG
*
46026625 AGCTGTAAATCAGTATGCTCTCACG
1 AGCTGTAAATCAGTACGCTCTCACG
46026650 AG
1 AG
46026652 TTATGGGTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
AGCTGTAAATCAGTACGCTCTCACG
Found at i:46029029 original size:25 final size:25
Alignment explanation
Indices: 46029001--46029058 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
46028991 ACAGCTAAGA
46029001 GAGTGATTCGGTATGTCAAAGACAC
1 GAGTGATTCGGTATGTCAAAGACAC
*
46029026 GAGTGATTCGGTATGTCAAAGGCAC
1 GAGTGATTCGGTATGTCAAAGACAC
*
46029051 AAGTGATT
1 GAGTGATT
46029059 TTGGTGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (25 bp):
GAGTGATTCGGTATGTCAAAGACAC
Found at i:46041025 original size:42 final size:42
Alignment explanation
Indices: 46040929--46041007 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
46040919 ACGGCCTTGC
*
46040929 GCAC-AGG-CGTGTGTGGCTCTTTCGAGAGTTACATGGCCCG
1 GCACAAGGACGTGTGTGGCTATTTCGAGAGTTACATGGCCCG
*
46040969 GCACAAGGGCGTGTGTGGCTATTTCGAGAGTTACATGGC
1 GCACAAGGACGTGTGTGGCTATTTCGAGAGTTACATGGC
46041008 TTTGCACACG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
40 4 0.11
41 3 0.08
42 29 0.81
ACGTcount: A:0.18, C:0.22, G:0.35, T:0.25
Consensus pattern (42 bp):
GCACAAGGACGTGTGTGGCTATTTCGAGAGTTACATGGCCCG
Found at i:46044844 original size:12 final size:12
Alignment explanation
Indices: 46044824--46044917 Score: 57
Period size: 12 Copynumber: 7.8 Consensus size: 12
46044814 CTGCTCCTTG
*
46044824 ATCAGCTCCTAA
1 ATCATCTCCTAA
* **
46044836 ATCTTCTCCTTT
1 ATCATCTCCTAA
46044848 ATCATCTCCTAA
1 ATCATCTCCTAA
* *
46044860 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
46044872 ATCAGCTCCTAA
1 ATCATCTCCTAA
* *
46044884 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
46044896 ATCAGCTCCTAA
1 ATCATCTCCTAA
*
46044908 ATCTTCTCCT
1 ATCATCTCCT
46044918 GACAGCCTTT
Statistics
Matches: 58, Mismatches: 20, Indels: 8
0.67 0.23 0.09
Matches are distributed among these distances:
11 6 0.10
12 46 0.79
13 6 0.10
ACGTcount: A:0.21, C:0.38, G:0.03, T:0.37
Consensus pattern (12 bp):
ATCATCTCCTAA
Found at i:46044851 original size:24 final size:24
Alignment explanation
Indices: 46044812--46044917 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
46044802 ACCGGCCAAC
*
46044812 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
* *
46044837 TCTTCTCCTTTATCATCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
46044861 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
46044885 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
46044909 TCTTCTCCT
1 TCCTCTCCT
46044918 GACAGCCTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 70 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.39, G:0.05, T:0.38
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:46049929 original size:15 final size:15
Alignment explanation
Indices: 46049909--46049939 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46049899 AAATATGAAA
46049909 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
46049924 GATATGTTTTGTATT
1 GATATGTTTTGGATT
46049939 G
1 G
46049940 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:46052991 original size:20 final size:20
Alignment explanation
Indices: 46052884--46052992 Score: 62
Period size: 20 Copynumber: 5.5 Consensus size: 20
46052874 GGGATTTGCT
* *
46052884 CTTCGGTGCCCCTGTTTGGA
1 CTTCGGTGCCCCTGTCTGCA
* * *
46052904 CTTTGGTG-CCCTGTATACA
1 CTTCGGTGCCCCTGTCTGCA
* * * *
46052923 CTTCGGTGTCTCTAT-TCGTA
1 CTTCGGTGCCCCTGTCT-GCA
* *
46052943 CTACGGTGCCCCTGTTTGCA
1 CTTCGGTGCCCCTGTCTGCA
* *
46052963 CATT-TGTGCCCTTGTCTGCA
1 C-TTCGGTGCCCCTGTCTGCA
46052983 CTTCGGTGCC
1 CTTCGGTGCC
46052993 ACTTTTATGC
Statistics
Matches: 65, Mismatches: 19, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
19 18 0.28
20 45 0.69
21 2 0.03
ACGTcount: A:0.09, C:0.30, G:0.24, T:0.37
Consensus pattern (20 bp):
CTTCGGTGCCCCTGTCTGCA
Found at i:46061550 original size:44 final size:44
Alignment explanation
Indices: 46061485--46061608 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
46061475 AGTACATGTA
* *
46061485 TCGCATCTATAATGAAGTCGGACCAACTCAACGAGCT-GGAATGC
1 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGG-ATGC
46061529 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
** * * *
46061573 -CTTATACATATCACGAACCCGGACCAACTCAACGAG
1 TCGCATCCATA--ATGAACTCGGACCAACTCAACGAG
46061609 TTTAGATTTT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
43 7 0.10
44 39 0.56
45 24 0.34
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
Found at i:46066038 original size:49 final size:49
Alignment explanation
Indices: 46065982--46066147 Score: 314
Period size: 49 Copynumber: 3.4 Consensus size: 49
46065972 TACATATATG
* *
46065982 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
46066031 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
46066080 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
46066129 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
46066148 TAATGCAAAA
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 115 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:46066299 original size:37 final size:37
Alignment explanation
Indices: 46066249--46066370 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
46066239 GGAATATGTT
*
46066249 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
46066286 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
46066323 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
46066360 CTGGGTAAGAC
1 CCGGGTAAGAC
46066371 TTCTTTTATA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:46073778 original size:40 final size:40
Alignment explanation
Indices: 46073732--46073813 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
46073722 GGCGTGTTAT
* *
46073732 TGTTACCTGAGGTCTAAAGTTTGAGTCTTGGTATGCGTAA
1 TGTTACCTGAGGTCTAAAGTTTGAGTCCTGGTATGCGCAA
46073772 TGTTACCTGAGGTCTAAAGTTTGAGTCCTGGTATGCGCAA
1 TGTTACCTGAGGTCTAAAGTTTGAGTCCTGGTATGCGCAA
46073812 TG
1 TG
46073814 GAGTGTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (40 bp):
TGTTACCTGAGGTCTAAAGTTTGAGTCCTGGTATGCGCAA
Found at i:46074203 original size:43 final size:42
Alignment explanation
Indices: 46074156--46074317 Score: 155
Period size: 43 Copynumber: 3.6 Consensus size: 42
46074146 CCTATCGATT
* *
46074156 TTCTTCTCTCATTCTCTCAATTGGTTTTGCTTTGGTCAAATAC
1 TTCTTCTCTC-TTCTCTCAATCGGTTTTGCTTTGGTCGAATAC
* * *
46074199 TTCTTCTTCTCTCCCTTTCTCAATCGGTTTTACTTTGGTTGAATAC
1 TTCTTC-TCTCT---TCTCTCAATCGGTTTTGCTTTGGTCGAATAC
* * *
46074245 TTTTTTTCTCTCTT-TCTCAGTCGGTTTTGCTTTGGCCGAATAC
1 --TTCTTCTCTCTTCTCTCAATCGGTTTTGCTTTGGTCGAATAC
46074288 TTCTTCTTCTTCTCTCTCTCAATCGGTTTT
1 TTCTTC-TC-TCT-TCTCTCAATCGGTTTT
46074318 AGCAATCCCT
Statistics
Matches: 97, Mismatches: 12, Indels: 18
0.76 0.09 0.14
Matches are distributed among these distances:
41 5 0.05
42 2 0.02
43 35 0.36
44 6 0.06
45 13 0.13
46 26 0.27
47 5 0.05
48 5 0.05
ACGTcount: A:0.12, C:0.25, G:0.12, T:0.51
Consensus pattern (42 bp):
TTCTTCTCTCTTCTCTCAATCGGTTTTGCTTTGGTCGAATAC
Found at i:46074220 original size:46 final size:46
Alignment explanation
Indices: 46074156--46074317 Score: 190
Period size: 46 Copynumber: 3.6 Consensus size: 46
46074146 CCTATCGATT
* * *
46074156 TTCTTCTCT-CATTCTCTCAATTGGTTTTGCTTTGGTCAAATACTTC
1 TTCTTCTCTCCCTT-TCTCAATCGGTTTTGCTTTGGTCGAATACTTC
* *
46074202 TTCTTCTCTCCCTTTCTCAATCGGTTTTACTTTGGTTGAATACTT-
1 TTCTTCTCTCCCTTTCTCAATCGGTTTTGCTTTGGTCGAATACTTC
* * *
46074247 TT-TT-TCTCTCTTTCTCAGTCGGTTTTGCTTTGGCCGAATACTTC
1 TTCTTCTCTCCCTTTCTCAATCGGTTTTGCTTTGGTCGAATACTTC
* *
46074291 TTCTTCT-TCTCTCTCTCAATCGGTTTT
1 TTCTTCTCTCCCTTTCTCAATCGGTTTT
46074318 AGCAATCCCT
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
43 34 0.34
44 4 0.04
45 22 0.22
46 37 0.37
47 3 0.03
ACGTcount: A:0.12, C:0.25, G:0.12, T:0.51
Consensus pattern (46 bp):
TTCTTCTCTCCCTTTCTCAATCGGTTTTGCTTTGGTCGAATACTTC
Found at i:46074279 original size:89 final size:90
Alignment explanation
Indices: 46074154--46074318 Score: 244
Period size: 89 Copynumber: 1.8 Consensus size: 90
46074144 TGCCTATCGA
* * *
46074154 TTTTCTTCTCTCATTCTCTCAATTGGTTTTGCTTTGGTCAAATACTTCTTCTTCTCTCCCTTTCT
1 TTTTCTTCTCTCATTCTCTCAATCGGTTTTGCTTTGGCCAAATACTTCTTCTTCT-TCCCTCTCT
46074219 CAATCGGTTTTACTTTGGTTGAATAC
65 CAATCGGTTTTACTTTGGTTGAATAC
* * * *
46074245 TTTTTTTCTCTC-TT-TCTCAGTCGGTTTTGCTTTGGCCGAATACTTCTTCTTCTTCTCTCTCTC
1 TTTTCTTCTCTCATTCTCTCAATCGGTTTTGCTTTGGCCAAATACTTCTTCTTCTTCCCTCTCTC
46074308 AATCGGTTTTA
66 AATCGGTTTTA
46074319 GCAATCCCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
88 19 0.28
89 35 0.52
90 2 0.03
91 11 0.16
ACGTcount: A:0.12, C:0.25, G:0.12, T:0.52
Consensus pattern (90 bp):
TTTTCTTCTCTCATTCTCTCAATCGGTTTTGCTTTGGCCAAATACTTCTTCTTCTTCCCTCTCTC
AATCGGTTTTACTTTGGTTGAATAC
Found at i:46075946 original size:15 final size:15
Alignment explanation
Indices: 46075916--46075958 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
46075906 CTCATATTTG
46075916 ATTTTAATTATAAGTA
1 ATTTT-ATTATAAGTA
*
46075932 ATTTTATTTTAAGTA
1 ATTTTATTATAAGTA
* *
46075947 TTTTTACTATAA
1 ATTTTATTATAA
46075959 TAAGGCCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (15 bp):
ATTTTATTATAAGTA
Found at i:46076624 original size:13 final size:13
Alignment explanation
Indices: 46076606--46076632 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46076596 ATATGTGATA
46076606 TGTGTGAAAATTT
1 TGTGTGAAAATTT
46076619 TGTGTGAAAATTT
1 TGTGTGAAAATTT
46076632 T
1 T
46076633 CTTGTTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:46077852 original size:42 final size:43
Alignment explanation
Indices: 46077744--46077908 Score: 174
Period size: 43 Copynumber: 3.8 Consensus size: 43
46077734 TTCTAGTATG
** * * *
46077744 TGATTTCGTGTAAGACCACATCTGGGACGTTAGCATCGATTTGA
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAT-A
*
46077788 -GATTTATGTGTAAGACCATGTCTGGGACATTGGCATC-ATATA
1 TGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATA
* * *
46077830 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATA
* * *
46077873 TGATTACATGTAAG-GCATCGTCTGGGACATTGGCAT
1 TGATTTCGTGTAAGACCAT-GTCTGGGACATTGGCAT
46077909 TGTACGATGA
Statistics
Matches: 102, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.30
43 45 0.44
44 26 0.25
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATA
Found at i:46079037 original size:30 final size:30
Alignment explanation
Indices: 46078984--46079040 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
46078974 ATGGCTATGA
* *
46078984 CACACGGGCGTGTGGACTGCCCATGTGCCT
1 CACACAGGCGTGTGGACTACCCATGTGCCT
**
46079014 CACACAGGCGTGTGGTTTACCCATGTG
1 CACACAGGCGTGTGGACTACCCATGTG
46079041 GAAGTGCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.23
Consensus pattern (30 bp):
CACACAGGCGTGTGGACTACCCATGTGCCT
Found at i:46079297 original size:21 final size:21
Alignment explanation
Indices: 46079271--46079312 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
46079261 TGAGTATCCT
46079271 TATTAATTCCGAATGGTTCAA
1 TATTAATTCCGAATGGTTCAA
46079292 TATTAATTCCGAATGGTTCAA
1 TATTAATTCCGAATGGTTCAA
46079313 CGGGAAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (21 bp):
TATTAATTCCGAATGGTTCAA
Found at i:46082396 original size:42 final size:41
Alignment explanation
Indices: 46082287--46082399 Score: 113
Period size: 44 Copynumber: 2.7 Consensus size: 41
46082277 TTCCGCTATG
***
46082287 TGATTTTGTGTAAGACCAC-GTCTGGGACATTGGCATCGACT
1 TGATTTTGTGTAAGACC-CTGTCTGGGACATCAACATCGACT
* *
46082328 TGAGATTTACGTGTAAGACCATGTCTGGGACATCAACATCGTA-T
1 T--GATTT-TGTGTAAGACCCTGTCTGGGACATCAACATCG-ACT
46082372 ATGATTTTGTGTAAGACCCTGTCTGGGA
1 -TGATTTTGTGTAAGACCCTGTCTGGGA
46082400 TAGTGGCATC
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.02
42 19 0.32
43 10 0.17
44 27 0.46
45 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
TGATTTTGTGTAAGACCCTGTCTGGGACATCAACATCGACT
Found at i:46082410 original size:42 final size:40
Alignment explanation
Indices: 46082287--46082420 Score: 110
Period size: 44 Copynumber: 3.1 Consensus size: 40
46082277 TTCCGCTATG
46082287 TGATTTTGTGTAAGACCAC-GTCTGGGACATTGGCATCG-ACT
1 TGATTTTGTGTAAGACC-CTGTCTGGGACA-TGGCATCGTA-T
* * **
46082328 TGAGATTTACGTGTAAGACCATGTCTGGGACATCAACATCGTAT
1 T--GATTT-TGTGTAAGACCCTGTCTGGGACAT-GGCATCGTAT
*
46082372 ATGATTTTGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 -TGATTTTGTGTAAGACCCTGTCTGGGACA-TGGCATCG-TA-T
46082416 TGATT
1 TGATT
46082421 ACATGTAAGA
Statistics
Matches: 74, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
41 1 0.01
42 25 0.34
43 19 0.26
44 27 0.36
45 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (40 bp):
TGATTTTGTGTAAGACCCTGTCTGGGACATGGCATCGTAT
Found at i:46089187 original size:13 final size:13
Alignment explanation
Indices: 46089169--46089193 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46089159 TATGTGATAT
46089169 GTGTGAAAATTTC
1 GTGTGAAAATTTC
46089182 GTGTGAAAATTT
1 GTGTGAAAATTT
46089194 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:46090403 original size:42 final size:43
Alignment explanation
Indices: 46090309--46090403 Score: 122
Period size: 42 Copynumber: 2.2 Consensus size: 43
46090299 TAAAACCACA
* *
46090309 TCTGGGACATTGGCATCAATTTGAGATTTACGTGTAAGACCATG
1 TCTGGGACATTGGCATCAATAT-AGATTTACGTGCAAGACCATG
* *
46090353 TCTGGGACATTGGCATC-GTATATGATTT-CGTGCAAGACCCTG
1 TCTGGGACATTGGCATCAATATA-GATTTACGTGCAAGACCATG
46090395 TCTGGGACA
1 TCTGGGACA
46090404 GAGGCAACAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 22 0.48
43 7 0.15
44 17 0.37
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
TCTGGGACATTGGCATCAATATAGATTTACGTGCAAGACCATG
Found at i:46090526 original size:32 final size:32
Alignment explanation
Indices: 46090489--46090553 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
46090479 GTATCCTTAT
46090489 TGATTCCGAATAGTTCAACGTGAAATATTGAG
1 TGATTCCGAATAGTTCAACGTGAAATATTGAG
*
46090521 TGATTCTGAATAGTTCAACGTGAAATATTGAG
1 TGATTCCGAATAGTTCAACGTGAAATATTGAG
46090553 T
1 T
46090554 TAAGATCGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.34
Consensus pattern (32 bp):
TGATTCCGAATAGTTCAACGTGAAATATTGAG
Found at i:46094520 original size:24 final size:24
Alignment explanation
Indices: 46094493--46094538 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
46094483 GAATTTCACA
46094493 TTCAAAT-CAGCACACATAGTGCCT
1 TTCAAATAC-GCACACATAGTGCCT
* *
46094517 TTCAACTACGCACACGTAGTGC
1 TTCAAATACGCACACATAGTGC
46094539 TAGTATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (24 bp):
TTCAAATACGCACACATAGTGCCT
Found at i:46102248 original size:40 final size:40
Alignment explanation
Indices: 46102203--46102370 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
46102193 CGGAATACAA
46102203 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
46102243 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
46102283 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
46102323 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
46102363 CCGGATAT
1 CCGGATAT
46102371 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:46102343 original size:80 final size:80
Alignment explanation
Indices: 46102203--46102370 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
46102193 CGGAATACAA
* *
46102203 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
46102268 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
46102283 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
46102346 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
46102363 CCGGATAT
1 CCGGATAT
46102371 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:46111806 original size:46 final size:46
Alignment explanation
Indices: 46111734--46111947 Score: 193
Period size: 46 Copynumber: 4.5 Consensus size: 46
46111724 TGATATGTGT
46111734 GCTAGTGTAAGACATGTCTGGGACATGCATCGAC-CACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACACA-ATTATGAGA
* * * * ** * *
46111780 GCTAGTGTAAGACATGTTTCGTACATGCATCGGCATTGA-GACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACA-CAATTATGAGA
* * *
46111826 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGA-TATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GACAC-A-ATTATG-AGA
*
46111874 GCTAGTGTAAGACATGTCTGGGACATAGCATCGACACCAATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACA-CAAT-TATGAGA
* *
46111923 GCCAGTGTAAGACCTGTCTGGGACA
1 GCTAGTGTAAGACATGTCTGGGACA
46111948 CGACATTAGC
Statistics
Matches: 134, Mismatches: 23, Indels: 19
0.76 0.13 0.11
Matches are distributed among these distances:
46 63 0.47
47 4 0.03
48 33 0.25
49 34 0.25
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACACAATTATGAGA
Found at i:46111994 original size:98 final size:97
Alignment explanation
Indices: 46111822--46112006 Score: 239
Period size: 98 Copynumber: 1.9 Consensus size: 97
46111812 GCATTGAGAC
* * * *
46111822 GAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATGCAAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGACACGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGAC
46111887 ATGTCTGGGACATA-GCATCGACACCAATAGAT
66 ATGTCTGGGACA-AGGCATCGACACCAATAGAT
* * * *
46111919 GAGAGCCAGTGTAAGACCTGTCTGGGACACGACATTAGCCTCGATATATGAAAG-TCAGTGTAAG
1 GAGAGCCAGTGTAAGACATGTCTAGGACACG-CATCAGCCTCGAGATATGAAAGCT-AGTGTAAG
* *
46111983 ACCTGTTTGGGACAAGGCATCGAC
64 ACATGTCTGGGACAAGGCATCGAC
46112007 TTTGATATGC
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
97 29 0.39
98 46 0.61
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (97 bp):
GAGAGCCAGTGTAAGACATGTCTAGGACACGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGAC
ATGTCTGGGACAAGGCATCGACACCAATAGAT
Found at i:46112014 original size:49 final size:47
Alignment explanation
Indices: 46111917--46112044 Score: 123
Period size: 49 Copynumber: 2.7 Consensus size: 47
46111907 ACACCAATAG
* * * *
46111917 ATGAGAGCCAGTGTAAGACCTGTCTGGGACACGACATTAGCCTCGATAT
1 ATGAAAGCCAGTGTAAGACCTGTTTGGGACAAGACATGAGCCTCG--AT
* * * *
46111966 ATGAAAGTCAGTGTAAGACCTGTTTGGGACAAGGCATCGA-CTTTGAT
1 ATGAAAGCCAGTGTAAGACCTGTTTGGGACAAGACAT-GAGCCTCGAT
**
46112013 ATGCTAGCCAGTGTAAGACCATGTTTGGGACA
1 ATGAAAGCCAGTGTAAGACC-TGTTTGGGACA
46112045 TGGCGTCTGC
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
47 19 0.29
48 11 0.17
49 35 0.53
50 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
ATGAAAGCCAGTGTAAGACCTGTTTGGGACAAGACATGAGCCTCGAT
Found at i:46116206 original size:41 final size:41
Alignment explanation
Indices: 46116102--46116209 Score: 146
Period size: 41 Copynumber: 2.6 Consensus size: 41
46116092 CTTTATGCTT
* * * * *
46116102 AGCAGGCTTTGTGCCGGTGTATAATTTCAGGCCTATTGCCT
1 AGCAGGCTTTATGCCGGTGTATTATATCAAGCCTATTGCCC
*
46116143 AGTAGGCTTTATGCCGGTGTATTATATCAAGCCTATTGCCC
1 AGCAGGCTTTATGCCGGTGTATTATATCAAGCCTATTGCCC
46116184 AGCAGGCTCTT-TGCCGGTGTATTATA
1 AGCAGGCT-TTATGCCGGTGTATTATA
46116210 GTAGGCTTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 57 0.97
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.34
Consensus pattern (41 bp):
AGCAGGCTTTATGCCGGTGTATTATATCAAGCCTATTGCCC
Found at i:46117987 original size:24 final size:24
Alignment explanation
Indices: 46117955--46118002 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
46117945 GAGTGATGCA
46117955 CTGTCATAGTTAGAGAAGAAAATT
1 CTGTCATAGTTAGAGAAGAAAATT
46117979 CTGTCATAGTTAGAGAAGAAAATT
1 CTGTCATAGTTAGAGAAGAAAATT
46118003 TACTTTGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (24 bp):
CTGTCATAGTTAGAGAAGAAAATT
Found at i:46118577 original size:15 final size:15
Alignment explanation
Indices: 46118549--46118592 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
46118539 TACAGTATTG
46118549 TATCTTGAGATTTCTC
1 TATCTTG-GATTTCTC
*
46118565 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
46118580 TA-CTTGGTTTTCT
1 TATCTTGGATTTCT
46118593 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 9 0.35
16 7 0.27
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:46121139 original size:46 final size:45
Alignment explanation
Indices: 46121082--46121234 Score: 157
Period size: 46 Copynumber: 3.3 Consensus size: 45
46121072 GTGTAAGGGT
* *
46121082 TGTCTGTGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACA
1 TGTCTGGGACATGCATC-GCCACATTATGAGAGCTAGTGTAAGACA
* *
46121128 TGTCTGGGACATGCATCGGCA-TTTAGATGAGAGCTAGTGTAAGACA
1 TGTCTGGGACATGCATCGCCACATT--ATGAGAGCTAGTGTAAGACA
* * *
46121174 TGTCTGGGACATGCATCGGCCTCGAGATATGCA-AGCTAGTGTAAGACC
1 TGTCTGGGACATGCATC-GCCAC-A-TTATG-AGAGCTAGTGTAAGACA
*
46121222 TGTCTAGGACATG
1 TGTCTGGGACATG
46121235 GCGTCAGCTT
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 52 0.58
47 2 0.02
48 29 0.32
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (45 bp):
TGTCTGGGACATGCATCGCCACATTATGAGAGCTAGTGTAAGACA
Found at i:46121232 original size:48 final size:46
Alignment explanation
Indices: 46121108--46121234 Score: 166
Period size: 46 Copynumber: 2.7 Consensus size: 46
46121098 CAGCCACATT
* **
46121108 ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTTAG
1 ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
*
46121154 ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
1 ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
* *
46121200 AT-ATGCAAGCTAGTGTAAGACCTGTCTAGGACATG
1 ATGA-G--AGCTAGTGTAAGACATGTCTGGGACATG
46121235 GCGTCAGCTT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
45 1 0.01
46 45 0.62
48 26 0.36
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAG
Found at i:46121312 original size:93 final size:95
Alignment explanation
Indices: 46121107--46121386 Score: 245
Period size: 93 Copynumber: 3.0 Consensus size: 95
46121097 TCAGCCACAT
* * * * * * *
46121107 TATGAGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCATTTAGATGAG--AGCTAGTGTA
1 TATGAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGAC-TTT-GATGTGCTAGCCAGTGTA
* * * * *
46121169 AGACATGTCTGGGACATGCATCGGCCTCGAGA
64 AGACCTATCTGGGACAGGCATCGGCATTGAGA
* * *
46121201 TATGCAAGCTAGTGTAAGACCTGTCTAGGACATGGCGTC-AGC-TTGATGTG-T-GTCAGTGTAA
1 TATGAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGA-CTTTGATGTGCTAGCCAGTGTAA
46121262 GACCTATCTGGGACACGGCATCGGCATTG-GTA
65 GACCTATCTGGGACA-GGCATCGGCATTGAG-A
* * *
46121294 TATGAAAG-TCAGTGTAAGACCTGTTTGGGATATGGCATCGACTTTGATGTGCTAGCCAGTGTAA
1 TATGAAAGCT-AGTGTAAGACCTGTCTAGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAA
* *
46121358 GACCTTCTCTGGGACATGGCATCGACATT
65 GACC-TATCTGGGACA-GGCATCGGCATT
46121387 TTACCCTATG
Statistics
Matches: 151, Mismatches: 24, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
92 28 0.19
93 46 0.30
94 37 0.25
95 6 0.04
96 13 0.09
97 21 0.14
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (95 bp):
TATGAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAG
ACCTATCTGGGACAGGCATCGGCATTGAGA
Found at i:46121380 original size:48 final size:46
Alignment explanation
Indices: 46121113--46121383 Score: 185
Period size: 48 Copynumber: 5.8 Consensus size: 46
46121103 ACATTATGAG
* * *
46121113 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCATTTAGATGAG-
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-TTT-GATGTGA
* * * ** *
46121159 AGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCA
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATC-GACT-TTGATGTG-A
* * *
46121207 AGCTAGTGTAAGACCTGTCTAGGACATGGCGTC-AGC-TTGATGTG-
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CTTTGATGTGA
* * * * * * *
46121251 TGTCAGTGTAAGACCTATCTGGGACACGGCATCGGCATTGGTATATGAA
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-TTTG-ATGTG-A
* * * *
46121300 AGTCAGTGTAAGACCTGTTTGGGATATGGCATCGACTTTGATGTGCT
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTG-A
*
46121347 AGCCAGTGTAAGACCTTCTCTGGGACATGGCATCGAC
1 AGCCAGTGTAAGACC-TGTCTGGGACATGGCATCGAC
46121384 ATTTTACCCT
Statistics
Matches: 175, Mismatches: 37, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
44 27 0.15
46 43 0.25
47 24 0.14
48 47 0.27
49 34 0.19
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (46 bp):
AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGA
Found at i:46132539 original size:20 final size:21
Alignment explanation
Indices: 46132485--46132540 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 21
46132475 AGGGAATAGG
*
46132485 GAAAATAGAAG-GAAAGGGAAA
1 GAAAAGAGAAGAG-AAGGGAAA
* *
46132506 GAAAGGGGAA-AGAAGGG-AA
1 GAAAAGAGAAGAGAAGGGAAA
46132525 GAAAAGAGAAGAGAAG
1 GAAAAGAGAAGAGAAG
46132541 AAGAGAAAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 10 0.36
20 10 0.36
21 8 0.29
ACGTcount: A:0.59, C:0.00, G:0.39, T:0.02
Consensus pattern (21 bp):
GAAAAGAGAAGAGAAGGGAAA
Found at i:46132850 original size:12 final size:12
Alignment explanation
Indices: 46132833--46132857 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46132823 AGTGTTCCCA
46132833 GGCCGTGTGCAC
1 GGCCGTGTGCAC
46132845 GGCCGTGTGCAC
1 GGCCGTGTGCAC
46132857 G
1 G
46132858 TTCGTTCGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.32, G:0.44, T:0.16
Consensus pattern (12 bp):
GGCCGTGTGCAC
Found at i:46141407 original size:33 final size:33
Alignment explanation
Indices: 46141365--46141446 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 33
46141355 ATTTGCATCT
46141365 CTGATACTGTACTGAATTAGGCTAAAGCCCACA
1 CTGATACTGTACTGAATTAGGCTAAAGCCCACA
* * * * *
46141398 CTGATACTGTCACCGTATTGGGCTAAGGCCCAGA
1 CTGATACTGT-ACTGAATTAGGCTAAAGCCCACA
*
46141432 CTGATATTGCTACTG
1 CTGATACTG-TACTG
46141447 TTAAAGGCCT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
33 10 0.25
34 29 0.73
35 1 0.03
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (33 bp):
CTGATACTGTACTGAATTAGGCTAAAGCCCACA
Found at i:46143974 original size:47 final size:47
Alignment explanation
Indices: 46143903--46144168 Score: 262
Period size: 47 Copynumber: 5.7 Consensus size: 47
46143893 TGTGTAAGGT
*
46143903 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * *
46143950 GTCGATGCCATGTCCCATACATGGTCTTACACTGACT-ATCATCT-AGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCA--A
* * * *
46143998 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AA
* * * *
46144044 GCCGATG-CATGTCCCAGAC-TTGTCTTACACTAGCTCTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * * *
46144089 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCA-A
46144138 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
46144169 AGCCAACAAC
Statistics
Matches: 185, Mismatches: 22, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
45 2 0.01
46 72 0.39
47 78 0.42
48 32 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
Found at i:46144112 original size:140 final size:141
Alignment explanation
Indices: 46143903--46144168 Score: 376
Period size: 140 Copynumber: 1.9 Consensus size: 141
46143893 TGTGTAAGGT
* * * * *
46143903 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGCCAATGCCATGTCCCAG
* *
46143968 ACATGGTCTTACACTGACTATCAT-CTAGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGC
66 ACATGGTCTTACACTGACTATCATAATA-TAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
46144032 TTACGTCTCGAG
130 TTACGTCTCGAG
* * *
46144044 GCCGATG-CATGTCCCAGAC-TTGTCTTACACTAGCTCTCGTCTCAATGCCAATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA-GCCAATGCCATGTCCCA
* * *
46144107 GACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAGACATGTCTTACACT
65 GACATGGTCTTACACTGACTATCATAATATAGCCGATGCATGTCCCAGACATGTCTTACACT
46144169 AGCCAACAAC
Statistics
Matches: 110, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
139 22 0.20
140 79 0.72
141 9 0.08
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGCCAATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCATAATATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:46147567 original size:23 final size:23
Alignment explanation
Indices: 46147537--46147583 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
46147527 TGACCTCATT
46147537 AAGCCAAAATTCACTCTTACTGA
1 AAGCCAAAATTCACTCTTACTGA
46147560 AAGCCAAAATTCACTCTTACTGA
1 AAGCCAAAATTCACTCTTACTGA
46147583 A
1 A
46147584 CTTGGCATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (23 bp):
AAGCCAAAATTCACTCTTACTGA
Found at i:46149602 original size:28 final size:29
Alignment explanation
Indices: 46149562--46149640 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 29
46149552 GCAATCAAAT
*
46149562 ATGGCACTCAGTGTATG-AA-ATATTGAAA
1 ATGGCACTTAGTGT-TGCAAGATATTGAAA
*
46149590 ATGGCACTTAGTG-TGCAAGATATTGAGA
1 ATGGCACTTAGTGTTGCAAGATATTGAAA
* *
46149618 ATGACACTTAGTG-TGCAAAATAT
1 ATGGCACTTAGTGTTGCAAGATAT
46149641 CGAATGATTC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.04
27 2 0.04
28 41 0.91
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (29 bp):
ATGGCACTTAGTGTTGCAAGATATTGAAA
Found at i:46152879 original size:30 final size:30
Alignment explanation
Indices: 46152843--46152942 Score: 107
Period size: 28 Copynumber: 3.4 Consensus size: 30
46152833 ACAAGATTGA
* * *
46152843 CACTAAGTGTGCGGGTTTAAAATTGTACAG
1 CACTAAGTGTGCGAGTTTAAAATTATATAG
* *
46152873 CACTAAGTGTGCGAGTTT--GATTCTATAG
1 CACTAAGTGTGCGAGTTTAAAATTATATAG
* * *
46152901 CACTAAGTGTGTGAGCTGAAAA-TATATAG
1 CACTAAGTGTGCGAGTTTAAAATTATATAG
46152930 CACTAAGTGTGCG
1 CACTAAGTGTGCG
46152943 GATTCACTAT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 22 0.38
29 18 0.31
30 18 0.31
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (30 bp):
CACTAAGTGTGCGAGTTTAAAATTATATAG
Found at i:46155311 original size:26 final size:26
Alignment explanation
Indices: 46155275--46155336 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 26
46155265 GAGGAAGTGC
*
46155275 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCA
* *
46155301 AAAAGGGC-TTTGCCCTAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCA
46155326 AAAAGGGCTTT
1 AAAAGGGCTTT
46155337 ACCACAGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 22 0.69
26 10 0.31
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCA
Found at i:46155320 original size:25 final size:25
Alignment explanation
Indices: 46155275--46155345 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
46155265 GAGGAAGTGC
*
46155275 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
* *
46155301 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
46155326 AAAAGGGCTTTACCACAGTT
1 AAAAGGGCTTTGCCCCAGTT
46155346 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 31 0.79
26 8 0.21
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:46155602 original size:30 final size:31
Alignment explanation
Indices: 46155566--46155648 Score: 116
Period size: 30 Copynumber: 2.7 Consensus size: 31
46155556 AGTTTACAGT
46155566 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
46155596 AAAGGCTTCCGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
46155627 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
46155649 TTGAGATTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 25 0.54
31 21 0.46
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:46160286 original size:16 final size:18
Alignment explanation
Indices: 46160257--46160296 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
46160247 AGTTCGTTTC
46160257 GGTAGTAGATTAA-TGT-
1 GGTAGTAGATTAATTGTA
46160273 GGTAGTA-ATATAATTGTA
1 GGTAGTAGAT-TAATTGTA
46160291 GGTAGT
1 GGTAGT
46160297 TCGAGCGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.10
16 10 0.48
17 3 0.14
18 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.38
Consensus pattern (18 bp):
GGTAGTAGATTAATTGTA
Found at i:46165922 original size:11 final size:11
Alignment explanation
Indices: 46165896--46165941 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
46165886 ACTTTGATAT
*
46165896 ACATGAT-TGG
1 ACATGATATGC
46165906 ACATGATATGC
1 ACATGATATGC
46165917 ACATGATATG-
1 ACATGATATGC
*
46165927 -TATGATATGC
1 ACATGATATGC
46165937 ACATG
1 ACATG
46165942 GTGTATTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.27
10 7 0.23
11 15 0.50
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (11 bp):
ACATGATATGC
Found at i:46166038 original size:25 final size:25
Alignment explanation
Indices: 46165991--46166061 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
46165981 GAGGAAGTGC
* *
46165991 AAAAGGGCTTTTGCCCCAATTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
* *
46166017 AAAAGGGCTTTGACCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
46166042 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
46166062 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 32 0.80
26 8 0.20
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:46166074 original size:24 final size:24
Alignment explanation
Indices: 46165990--46166088 Score: 69
Period size: 25 Copynumber: 4.0 Consensus size: 24
46165980 GGAGGAAGTG
* *
46165990 CAAAAG-GGCTTTTGCCCCAATTTAC
1 CAAAAGAGGC-TTTGCCCC-AGTTAT
*
46166015 CGAAAAG-GGCTTTGACCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAG-TTAT
46166040 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
46166064 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
46166089 ATGATAAAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
24 20 0.33
25 33 0.54
26 8 0.13
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:46166316 original size:30 final size:31
Alignment explanation
Indices: 46166282--46166364 Score: 107
Period size: 30 Copynumber: 2.7 Consensus size: 31
46166272 CGTATACAGT
*
46166282 AAAGGCTTCGGCCCAGTGATATG-ATACTGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * * *
46166312 AAAGGCTTCAGCCTAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
46166343 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
46166365 TTGAGATTGA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 24 0.55
31 20 0.45
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:46178227 original size:39 final size:39
Alignment explanation
Indices: 46178184--46178308 Score: 223
Period size: 39 Copynumber: 3.2 Consensus size: 39
46178174 CGGCAATTTT
* * *
46178184 CCTGCTAGGTATAAACCCGAACTTAACACCGGCACGAGG
1 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
46178223 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
1 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
46178262 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
1 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
46178301 CCTGCTAG
1 CCTGCTAG
46178309 ACATTAAGTC
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
Found at i:46182751 original size:40 final size:39
Alignment explanation
Indices: 46182706--46182913 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
46182696 CGGAATACAA
*
46182706 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
46182746 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
46182786 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
46182826 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
46182866 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
46182906 CCGGATAT
1 CCGGATAT
46182914 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:46182846 original size:80 final size:81
Alignment explanation
Indices: 46182706--46182911 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
46182696 CGGAATACAA
* * *
46182706 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
46182770 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
46182786 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
46182849 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
46182866 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
46182912 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:46187365 original size:27 final size:28
Alignment explanation
Indices: 46187309--46187378 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
46187299 AAATTTGTAC
46187309 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46187337 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46187364 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
46187379 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:46196391 original size:40 final size:39
Alignment explanation
Indices: 46196305--46196416 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 39
46196295 GCTGGTAATT
*
46196305 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGAC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
* *
46196344 TACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-
1 -ACATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGAC
* *
46196386 A-ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGC
46196417 GGGTTACCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
40 57 0.90
41 1 0.02
43 5 0.08
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
Found at i:46203377 original size:40 final size:39
Alignment explanation
Indices: 46203332--46203497 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
46203322 CGGAATATAA
46203332 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
46203372 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
46203411 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
46203451 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
46203490 CCGGATAT
1 CCGGATAT
46203498 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:46203454 original size:79 final size:79
Alignment explanation
Indices: 46203348--46203497 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
46203338 ATAATCACGT
*
46203348 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
46203411 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
46203427 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
46203492 GGATAT
66 GGATAT
46203498 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:46204749 original size:58 final size:57
Alignment explanation
Indices: 46204681--46204799 Score: 141
Period size: 57 Copynumber: 2.1 Consensus size: 57
46204671 AATCCTCCCT
**
46204681 TTTCCTTAGTATTTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTCTTTTC
1 TTTCCTTAGTACATTCGG-CAAGAAGATGGAG-AAGGATGAACAAATTTTTTTCTTTTC
*** ** *
46204739 TTTCCTTAGTACATTCGGCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTTTT
1 TTTCCTTAGTACATTCGGCAAGAAGATGGAGAAGGATGAACAAATTTTTTTCTTTTC
46204796 TTTC
1 TTTC
46204800 TTCATACTCT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
57 33 0.63
58 19 0.37
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.43
Consensus pattern (57 bp):
TTTCCTTAGTACATTCGGCAAGAAGATGGAGAAGGATGAACAAATTTTTTTCTTTTC
Found at i:46211350 original size:40 final size:40
Alignment explanation
Indices: 46211305--46211471 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
46211295 CGGAATATAA
46211305 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
46211345 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
46211385 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46211425 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46211464 CCGGATAT
1 CCGGATAT
46211472 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46211455 original size:80 final size:79
Alignment explanation
Indices: 46211321--46211471 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
46211311 ATAATCACGT
*
46211321 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
46211386 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
46211401 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
46211464 CCGGATAT
64 CCGGATAT
46211472 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:46212730 original size:59 final size:57
Alignment explanation
Indices: 46212664--46212775 Score: 147
Period size: 59 Copynumber: 1.9 Consensus size: 57
46212654 CCCCCTTTTC
46212664 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTTTTTCTTTTCTTT
***
46212723 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTCTTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTCTTTT
46212776 TTTTTCTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
57 14 0.29
59 30 0.62
60 4 0.08
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (57 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTCTTTTCTTT
Found at i:46215848 original size:39 final size:39
Alignment explanation
Indices: 46215794--46215918 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
46215784 TGGCAATTTT
* *
46215794 CCTGCTAGGTATAAA-CTCGAACTTAACACCGGCACGAGG
1 CCTGCTAGGTATAAACCT-GAATTTATCACCGGCACGAGG
46215833 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
1 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
* *
46215872 TCTGCTAGGTATAAACCTGAATTTATCACCAGCACGAGG
1 CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
46215911 CCTGCTAG
1 CCTGCTAG
46215919 ACATTACGTC
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 78 0.98
40 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (39 bp):
CCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAGG
Found at i:46226911 original size:46 final size:45
Alignment explanation
Indices: 46226859--46227062 Score: 188
Period size: 46 Copynumber: 4.5 Consensus size: 45
46226849 GTCGATGCCG
* * *
46226859 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
*
46226905 TGTCCCATACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
46226949 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
46226995 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
46227041 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
46227063 AGCCCTCGTC
Statistics
Matches: 137, Mismatches: 11, Indels: 20
0.82 0.07 0.12
Matches are distributed among these distances:
43 5 0.04
44 32 0.23
45 4 0.03
46 96 0.70
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:46227062 original size:92 final size:91
Alignment explanation
Indices: 46226902--46227118 Score: 249
Period size: 92 Copynumber: 2.4 Consensus size: 91
46226892 CCGTGCTGAC
*
46226902 GCATGTCCCATACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
1 GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
* * *
46226966 ACACTGGCTATCATCTCGAGGCCGAT
66 ACACTAGCCATCATCTCAAGGCCGAT
* * * * *
46226992 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACATGTC
1 GCATGTCCCATACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACATGTC
* * * *
46227056 TTACACTAGCCCTCGTCTCAATGCCGAT
64 TGACACTAGCCATCATCTCAAGGCCGAT
*
46227084 GCCATGTCTCATACATGGTCTTACACTGGCACACA
1 G-CATGTCCCATACAT-GTCTTACACTGGC-CACA
46227119 AATCTCATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
90 25 0.24
92 50 0.48
93 14 0.13
94 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (91 bp):
GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
ACACTAGCCATCATCTCAAGGCCGAT
Found at i:46227085 original size:46 final size:44
Alignment explanation
Indices: 46226902--46227110 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 44
46226892 CCGTGCTGAC
* *
46226902 GCATGTCCCATACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * *
46226946 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
46226992 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
46227038 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* *
46227084 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
46227111 GGCACACAAA
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 27 0.20
45 4 0.03
46 77 0.56
47 15 0.11
48 10 0.07
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:46238041 original size:42 final size:43
Alignment explanation
Indices: 46237959--46238052 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
46237949 TCCTAGACGT
* * * *
46237959 GGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACA-
1 GGTCTTACATGAAATCAAATATCGATGCCAATATCCCAGACAC
*
46238001 GCGTCTTACATGAAATCAAATA-CGATGCCAATATTCCAGACAC
1 G-GTCTTACATGAAATCAAATATCGATGCCAATATCCCAGACAC
46238044 GGTCTTACA
1 GGTCTTACA
46238053 CAAGAACACA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCAATATCCCAGACAC
Found at i:46256483 original size:28 final size:28
Alignment explanation
Indices: 46256451--46256541 Score: 137
Period size: 28 Copynumber: 3.2 Consensus size: 28
46256441 TGACATACGT
*
46256451 CCGTGTCTATCACAAGGCCATGAAATGC
1 CCGTGTCTATCACAAGGCCATGACATGC
* *
46256479 CCGTGTCTATCACACGGCCATGACACGC
1 CCGTGTCTATCACAAGGCCATGACATGC
*
46256507 CCGTGTCTATCACATGGCCATGACATGC
1 CCGTGTCTATCACAAGGCCATGACATGC
*
46256535 CCATGTC
1 CCGTGTC
46256542 CTAGCCCGTG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.22
Consensus pattern (28 bp):
CCGTGTCTATCACAAGGCCATGACATGC
Found at i:46259268 original size:40 final size:40
Alignment explanation
Indices: 46259210--46259427 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
46259200 TGGATGATAA
* * * *
46259210 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* *
46259250 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
46259290 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
**
46259330 CCGGGCTAAGTCCCGAAGGCATTCGTGTTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
46259370 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
46259410 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
46259428 TACGTGGCTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 145 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:46261091 original size:46 final size:47
Alignment explanation
Indices: 46260995--46261211 Score: 191
Period size: 46 Copynumber: 4.7 Consensus size: 47
46260985 ACATATCCGT
* * * *
46260995 GCCGATGCCATGTCCCAGACAGGGTCTTACACTGGCAC-ATCTCGT-A-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTATGTCATGAG
*
46261041 GCCGATGCATGTTCCAGACATGTCTTACACTGGCT-TATGTCATGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTATGTCATGAG
* * * * * *
46261087 GCCGATGCATGTCCCAAACATGTCTCACACTAGCTCT-CGTC-TCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTATGTCAT-GAG
* *
46261133 GCCGATGCCATGTCCCA-AGCATGGTCTTACACTGGCTCTCA--TAATGTG
1 GCCGATG-CATGTCCCAGA-CAT-GTCTTACACTGGCTCT-ATGTCATGAG
46261181 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
46261212 AGCACACAAA
Statistics
Matches: 141, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
44 18 0.13
45 14 0.10
46 60 0.43
47 25 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTATGTCATGAG
Found at i:46261164 original size:94 final size:92
Alignment explanation
Indices: 46261041--46261214 Score: 237
Period size: 94 Copynumber: 1.9 Consensus size: 92
46261031 ACATCTCGTA
* *
46261041 GCCGATGCATGTTCCAGACATGTCTTACACTGGCT-T-ATGTCATGAGGCCGATGCATGTCCCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--TAATGAGGCCGATGCATGTCCCAA
46261104 ACATGTCTCACACTAGCTCTCGTCTCAAT
64 ACATGTCTCACACTAGCTCTCGTCTCAAT
*
46261133 GCCGATGCCATGTCCCA-AGCATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
1 GCCGATG-CATGTCCCAGA-CAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCA
* *
46261197 GACATGTCTTACACTAGC
63 AACATGTCTCACACTAGC
46261215 ACACAAATGA
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
92 8 0.11
93 11 0.15
94 51 0.71
95 1 0.01
96 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAAAC
ATGTCTCACACTAGCTCTCGTCTCAAT
Found at i:46263590 original size:43 final size:43
Alignment explanation
Indices: 46263525--46263653 Score: 168
Period size: 43 Copynumber: 3.0 Consensus size: 43
46263515 GAGATATGTG
* * *
46263525 GCATCCAAGGTCATTGGGTGGTCCGAGTTCATTATGGATGCAA
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCAA
** **
46263568 GCATTTGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGTGA
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCAA
* * *
46263611 GCATCCGTGCTCGTTGAGTGGTCCGAGTTCATTGTGGATGCAA
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCAA
46263654 TGCCTGTGAC
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCAA
Found at i:46272736 original size:42 final size:43
Alignment explanation
Indices: 46272657--46272807 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
46272647 CCAGATGTGT
* * * *
46272657 TCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGG
1 TCTTACACGAAATCAAATATCGATGCAAATGTCCCAGACAGGG
* *
46272700 TCTTACACGAAATCATATA-CGATGCAAATGTCCCAGACATGG
1 TCTTACACGAAATCAAATATCGATGCAAATGTCCCAGACAGGG
* * * *
46272742 TCTTACACGTAAATCACAA-ATTGATGCCAACGTCCTAGA-AGTGG
1 TCTTACACG-AAATCA-AATATCGATGCAAATGTCCCAGACAG-GG
* * *
46272786 TCTTACATGAAAACACATATCG
1 TCTTACACGAAATCAAATATCG
46272808 GATCCTATGT
Statistics
Matches: 87, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
42 30 0.34
43 32 0.37
44 25 0.29
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
TCTTACACGAAATCAAATATCGATGCAAATGTCCCAGACAGGG
Found at i:46275589 original size:46 final size:45
Alignment explanation
Indices: 46275496--46275581 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
46275486 TACATTTCAC
* *
46275496 GAACTCGGACTCAACTCAACGAGTTCGGCCATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG-CATGCGCAACCATAAGT
*
46275542 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGCATGCGCAACCAT
46275582 CCTAGTGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGCATGCGCAACCATAAGT
Found at i:46280196 original size:40 final size:40
Alignment explanation
Indices: 46280151--46280317 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
46280141 CGGAATATAA
46280151 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
46280191 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
46280231 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46280271 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46280310 CCGGATAT
1 CCGGATAT
46280318 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46280301 original size:80 final size:79
Alignment explanation
Indices: 46280151--46280317 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
46280141 CGGAATATAA
* *
46280151 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
46280216 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
46280231 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
46280293 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
46280310 CCGGATAT
1 CCGGATAT
46280318 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:46281165 original size:17 final size:19
Alignment explanation
Indices: 46281142--46281187 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
46281132 AAGAAGCATG
46281142 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
46281160 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
46281178 AATCATGCTC
1 AATCATGCTC
46281188 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:46285169 original size:11 final size:11
Alignment explanation
Indices: 46285153--46285179 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
46285143 ATTAAAAGCA
46285153 AATGTTTTGAT
1 AATGTTTTGAT
46285164 AATGTTTTGAT
1 AATGTTTTGAT
46285175 AATGT
1 AATGT
46285180 GAAATTAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (11 bp):
AATGTTTTGAT
Found at i:46287403 original size:40 final size:40
Alignment explanation
Indices: 46287358--46287523 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
46287348 CGGAATATAA
46287358 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
46287398 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
46287438 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46287478 CCGGATATAATTTCCAGCATAATTGTCTTC-GG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46287516 CCGGATAT
1 CCGGATAT
46287524 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 13 0.12
39 3 0.03
40 90 0.85
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46287508 original size:80 final size:78
Alignment explanation
Indices: 46287358--46287523 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 78
46287348 CGGAATATAA
* *
46287358 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
46287423 CCTTCGGGCCTTAGC
66 CCTTC-GG-CTTAGC
* * ** *
46287438 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
46287500 TTGTCTTCGGCTTAGC
64 -TGCCTTCGGCTTAGC
46287516 CCGGATAT
1 CCGGATAT
46287524 CATTCAATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 14 0.19
79 6 0.08
80 55 0.73
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGCTTAGC
Found at i:46288373 original size:17 final size:19
Alignment explanation
Indices: 46288350--46288395 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
46288340 AAGAAGCATG
46288350 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
46288368 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
46288386 AATCATGCTC
1 AATCATGCTC
46288396 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:46293174 original size:39 final size:39
Alignment explanation
Indices: 46293120--46293251 Score: 133
Period size: 40 Copynumber: 3.3 Consensus size: 39
46293110 GAGTCACGTA
*
46293120 CCTTCGGGAT-TTAACCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCGGATATAACCACTAGCACAATTG
* * *
46293159 CCTTCGGGTCTTAACCCGGATATAACAACTCGCAC-GTATG
1 CCTTCGGGTCTTAA-CCGGATATAACCACTAGCACAAT-TG
* * * *
46293199 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTA-ACCGGATATAACCACTAGCACAATTG
*
46293239 CCTTCGGGACTTA
1 CCTTCGGGTCTTA
46293252 GCCCGAGTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 13 0.17
40 62 0.82
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CCTTCGGGTCTTAACCGGATATAACCACTAGCACAATTG
Found at i:46293240 original size:40 final size:39
Alignment explanation
Indices: 46293134--46293256 Score: 147
Period size: 40 Copynumber: 3.1 Consensus size: 39
46293124 CGGGATTTAA
* * *
46293134 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
* **
46293174 CCGGATATAACAACTCGCACGTATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* *
46293214 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
46293254 CCG
1 CCG
46293257 AGTATCATTC
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 68 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46303328 original size:42 final size:42
Alignment explanation
Indices: 46303276--46303363 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
46303266 TCTCGATATA
* *
46303276 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
*
46303318 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
46303360 ATAT
1 ATAT
46303364 CCAGACTTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (42 bp):
ATATATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
Found at i:46308077 original size:40 final size:40
Alignment explanation
Indices: 46307969--46308078 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
46307959 ATTGAATGAT
* * * * *
46307969 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
46308009 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
46308049 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
46308079 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:46308093 original size:40 final size:39
Alignment explanation
Indices: 46307969--46308118 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
46307959 ATTGAATGAT
* * * * * * *
46307969 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
46308009 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
46308049 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
46308089 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
46308119 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:46311660 original size:46 final size:46
Alignment explanation
Indices: 46311557--46311770 Score: 156
Period size: 46 Copynumber: 4.6 Consensus size: 46
46311547 GTACCAATGC
* *
46311557 CATGTCCCAGACATGGTCTTACACT-G-AC-ACATTTC-ATGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTACATCTCTA-GGC-GATG
*
46311602 CATGTCCCAGACATGTCTTACACTAGCT-TACATCTTTAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCTAGG-CGATG
* * ** * *
46311648 CATGTCCTAGACATGTCTTATACTAG-TGC-ACGCCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-CTACATCTCTAGGC-GATG
* * * *
46311694 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATGTGGGCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACAT-CTCTAGGCGATG
* *
46311742 CATGTCCTAGACATTTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
46311771 ACACAAGTGA
Statistics
Matches: 134, Mismatches: 22, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
44 10 0.07
45 17 0.13
46 59 0.44
47 28 0.21
48 16 0.12
49 4 0.03
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCTAGGCGATG
Found at i:46311743 original size:94 final size:92
Alignment explanation
Indices: 46311595--46311767 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 92
46311585 ACATTTCATG
* * * *
46311595 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTTAGGTCGATGCATGTCCTAGAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATGTAGGGCAATGCATGTCCTAGAC
*
46311660 ATGTCTTATACTAGTGCACGCCTCAAT
66 ATGTCTTACACTAGTGCACGCCTCAAT
46311687 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATGT-GGGCAATGCATGTCCT
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-ATGTAGGGCAATGCATGTCCT
*
46311750 AGACATTTCTTACACTAG
62 AGACATGTCTTACACTAG
46311768 CTCACACAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
92 7 0.10
93 14 0.20
94 47 0.66
95 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (92 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATGTAGGGCAATGCATGTCCTAGAC
ATGTCTTACACTAGTGCACGCCTCAAT
Found at i:46321039 original size:132 final size:130
Alignment explanation
Indices: 46320625--46321043 Score: 477
Period size: 131 Copynumber: 3.2 Consensus size: 130
46320615 GGCAACTCGC
* * * * *
46320625 GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCCTTT
** * * *
46320690 G-AATTTCATTCATGTTTTCTAAAGACTCTTTAAAACGAAGGTAATACTCGATGTTTGGCAATTT
66 GAAATTTCACCCATG-TTTCTAAAGATTC-TAAAAACGAAGGTAATGCTCGATGTTTGGCAATTT
46320754 GG
129 GG
* * * *
46320756 GAGTCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCATTCAAAACAATCGAATAT-CCCTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCCTTT
* * *
46320820 AAAATTTCACCTATGTCTT-TAAAGATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTC
66 GAAATTTCACCCATGT-TTCTAAAGATTCTA-AAAACGAAGGTAATGCTCGATGTTTGGCAATT-
*
46320884 GGG
128 TGG
* * *
46320887 GAATCGTGCCCTATCGTGCTGGCTTGCAATTTCTTGTTGGTTCAAAATAATCGAATATCCCCTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCCTTT
* ** * * * * *
46320952 GAAATTTCACCCATGTTTCCTAAAAATTCTAAAAAATAAGGCAATGCACGATGATTAGAAATTTG
66 GAAATTTCACCCATGTTT-CTAAAGATTCTAAAAACGAAGGTAATGCTCGATGTTTGGCAATTTG
46321017 AG
130 -G
46321019 GAATCGTGCCCTA-CTGTGCTGGGTT
1 GAATCGTGCCCTATC-GTGCTGGGTT
46321044 TCGATTTTCT
Statistics
Matches: 241, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
129 1 0.00
130 44 0.18
131 119 0.49
132 67 0.28
133 10 0.04
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (130 bp):
GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTCGTTCAAAATAATCGAATATCCCCTTT
GAAATTTCACCCATGTTTCTAAAGATTCTAAAAACGAAGGTAATGCTCGATGTTTGGCAATTTGG
Found at i:46324239 original size:27 final size:27
Alignment explanation
Indices: 46324209--46324270 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
46324199 TTTAAAACCC
46324209 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTCTT
*
46324236 TA-GGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGT-ATATCGGTAATTTTGCTCTT
46324263 TAGGGGTA
1 TAGGGGTA
46324271 ATTTCGTGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.12
27 24 0.75
28 4 0.12
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (27 bp):
TAGGGGTATATCGGTAATTTTGCTCTT
Found at i:46325892 original size:20 final size:20
Alignment explanation
Indices: 46325869--46325906 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46325859 CACATCCAAA
*
46325869 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
46325889 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
46325907 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:46331846 original size:12 final size:12
Alignment explanation
Indices: 46331829--46331856 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
46331819 GGGTTTCCAC
46331829 TCTGACTTACAT
1 TCTGACTTACAT
46331841 TCTGACTTACAT
1 TCTGACTTACAT
46331853 TCTG
1 TCTG
46331857 TTCAGCATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (12 bp):
TCTGACTTACAT
Found at i:46334495 original size:40 final size:40
Alignment explanation
Indices: 46334450--46334579 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
46334440 CGGAATATAA
46334450 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
46334490 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
46334530 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
46334570 CCGGATATAA
1 CCGGATATAA
46334580 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:46334594 original size:40 final size:40
Alignment explanation
Indices: 46334466--46334617 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
46334456 ATAAGCATGT
* * *
46334466 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
46334506 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
46334546 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
46334586 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
46334618 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:46334600 original size:80 final size:80
Alignment explanation
Indices: 46334466--46334617 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
46334456 ATAAGCATGT
* *
46334466 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
46334531 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
46334546 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
46334609 CCCGGATAT
64 CCCGGATAT
46334618 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:46338122 original size:47 final size:47
Alignment explanation
Indices: 46338047--46338139 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 47
46338037 TATTTTACCT
* * *
46338047 AAAAAAGAATGGAAAGGCTAAGGCGAAAACCCGCAAAGGGCGCTTTC
1 AAAAAAAAATGGAAAGGCCAAGGCGAAAACCCGCAAAGGGCACTTTC
* *
46338094 AAAAAAAAATGGAGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTT
1 AAAAAAAAATGGAAAGGCCAAGGCGAAAACCCGCAAAGGGCACTTT
46338140 GAGACTAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.44, C:0.18, G:0.27, T:0.11
Consensus pattern (47 bp):
AAAAAAAAATGGAAAGGCCAAGGCGAAAACCCGCAAAGGGCACTTTC
Found at i:46338896 original size:64 final size:64
Alignment explanation
Indices: 46338800--46338920 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 64
46338790 ATCATTCACT
* * * * *
46338800 TAGTTAGGAGCACTTGATCCATTTCGATCATAGCATTCTAATTATTTAACATAAGCACCATGCC
1 TAGTTAGGAACACTTGATCCATTCCAATCATAGCATCCTAATTATTTAACACAAGCACCATGCC
* *
46338864 TAGTTAGGAACATTTGA-CTCATTCCAATCATAGCATCCTAATTATTTGACACAAGCA
1 TAGTTAGGAACACTTGATC-CATTCCAATCATAGCATCCTAATTATTTAACACAAGCA
46338921 TAGGCCTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
63 1 0.02
64 48 0.98
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.32
Consensus pattern (64 bp):
TAGTTAGGAACACTTGATCCATTCCAATCATAGCATCCTAATTATTTAACACAAGCACCATGCC
Found at i:46339185 original size:133 final size:133
Alignment explanation
Indices: 46338947--46339222 Score: 421
Period size: 133 Copynumber: 2.1 Consensus size: 133
46338937 ATTTTACATG
** *
46338947 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGTTCGATGACGGCGAATCTTGTCTTCCTGAAGTTGT
1 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGTTCGAAAACGGCGAATCTTGTCTTCCTGAAATTGT
*
46339012 AGTGAAACAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGT
66 AGTGAAACAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGC
46339077 AGA
131 AGA
* * * *
46339080 TCTTGTTTCCCTGAAGTTGCAGTGGAGCGGATT-GAAAATGGCGAATCTTGTCTTCCTGAAATTT
1 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAG-TTCGAAAACGGCGAATCTTGTCTTCCTGAAATTG
* *
46339144 TAGT-AAAGTAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATT
65 TAGTGAAA-CAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGT
46339208 GCAGA
129 GCAGA
*
46339213 TCTCGTCTCC
1 TCTTGTCTCC
46339223 AGTGGAGCAG
Statistics
Matches: 129, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
132 3 0.02
133 124 0.96
134 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (133 bp):
TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGTTCGAAAACGGCGAATCTTGTCTTCCTGAAATTGT
AGTGAAACAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAGTGC
AGA
Found at i:46339356 original size:44 final size:45
Alignment explanation
Indices: 46339306--46339411 Score: 117
Period size: 46 Copynumber: 2.4 Consensus size: 45
46339296 TGTCTCCCTA
* ** * *
46339306 AAGTTGCAGTGGAGCA-GATCGAAGTCACA-ATCCTTATCTCTCTG
1 AAGTTGCAGTGGAGCAGGAT-AAAAACACACAACCATATCTCTCTG
* *
46339350 AAGTTGCAGTAGAGCAGGATAAAAACACACGAACCATGTCTCTCTG
1 AAGTTGCAGTGGAGCAGGATAAAAACACAC-AACCATATCTCTCTG
46339396 AAGTTGCAGTGGAGCA
1 AAGTTGCAGTGGAGCA
46339412 TATTGAAGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 21 0.41
45 3 0.06
46 27 0.53
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (45 bp):
AAGTTGCAGTGGAGCAGGATAAAAACACACAACCATATCTCTCTG
Found at i:46340903 original size:2 final size:2
Alignment explanation
Indices: 46340896--46340930 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
46340886 TTTTATTTTC
46340896 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
46340931 GTACATGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:46342603 original size:131 final size:132
Alignment explanation
Indices: 46342388--46342820 Score: 435
Period size: 131 Copynumber: 3.3 Consensus size: 132
46342378 AGATTTGATA
* * * * * * * *
46342388 TTTGGCAACTCGCGGAATTGTGCCCTAACGTGCTGGTTTGCAATTTCTCGTTTGCTCAAAATAAT
1 TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAAT
* * * ** *
46342453 TGAAT-GTCGCTTTTGAATTTCATTCATGTTTTCTAAAGACTCTTTAAAACGAAGGTAATACTCG
66 CGAATATTC-CTTTAGAATTTCACCCATGTTTTCTAAAGACTCTATAAAACGAAGGTAATACTCG
46342517 ATG
130 ATG
* * *
46342520 TTTGGCAATT-TGGGAGTCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAACAAT
1 TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAAT
* * * **
46342584 CGAATATTCCTTTAAAATTTCACCCATGTCTT-TAAAGATTCTATAAAACGAAGGTAATGTTCGA
66 CGAATATTCCTTTAGAATTTCACCCATGTTTTCTAAAGACTCTATAAAACGAAGGTAATACTCGA
46342648 TG
131 TG
** * * * *
46342650 TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTTTAATTTCCTGCTGGTTCAAAATGAT
1 TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAAT
* * * * ** * * *
46342715 CGAATATCCCCTTTAGAATTTCACCCATGTTTCCTAAAAATTCTA-AAAAATAAGGCAATGCGCG
66 CGAATAT-TCCTTTAGAATTTCACCCATGTTTTCTAAAGACTCTATAAAACGAAGGTAATACTCG
46342779 ATG
130 ATG
* * * *
46342782 ATTAGAAATTCGAGGAATCGTGCCCTA-CTGTGCTGGGTT
1 TTTGGCAATTCGGGGAATCGTGCCCTATC-GTGCTGGGTT
46342821 TCGATTTTTT
Statistics
Matches: 251, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
130 40 0.16
131 119 0.47
132 82 0.33
133 10 0.04
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (132 bp):
TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAAT
CGAATATTCCTTTAGAATTTCACCCATGTTTTCTAAAGACTCTATAAAACGAAGGTAATACTCGA
TG
Found at i:46342816 original size:132 final size:131
Alignment explanation
Indices: 46342536--46342827 Score: 347
Period size: 132 Copynumber: 2.2 Consensus size: 131
46342526 AATTTGGGAG
* * *
46342536 TCGTGCCCTATCGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAAAA
1 TCGTGCCCTATCGTGCTGGGTTTCAATTTCCCGCTCGTTCAAAACAATCGAATATCCCTTTAAAA
* * * ** * * * *
46342601 TTTCACCCATGTCTTTAAAGATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGA
66 TTTCACCCATGTCTTTAAAAATTCTATAAAAAGAAGGCAATGCGCGATGATTAGAAATTCGAGGA
46342666 A
131 A
* * * ** *
46342667 TCGTGCCCTATCGTGCTGGGTTTTAATTTCCTGCTGGTTCAAAATGATCGAATATCCCCTTTAGA
1 TCGTGCCCTATCGTGCTGGGTTTCAATTTCCCGCTCGTTCAAAACAATCGAATAT-CCCTTTAAA
*
46342732 ATTTCACCCATGT-TTCCTAAAAATTCTA-AAAAATAAGGCAATGCGCGATGATTAGAAATTCGA
65 ATTTCACCCATGTCTT--TAAAAATTCTATAAAAAGAAGGCAATGCGCGATGATTAGAAATTCGA
46342795 GGAA
128 GGAA
*
46342799 TCGTGCCCTA-CTGTGCTGGGTTTCGATTT
1 TCGTGCCCTATC-GTGCTGGGTTTCAATTT
46342828 TTTCGTTGGA
Statistics
Matches: 136, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
131 51 0.38
132 75 0.55
133 10 0.07
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (131 bp):
TCGTGCCCTATCGTGCTGGGTTTCAATTTCCCGCTCGTTCAAAACAATCGAATATCCCTTTAAAA
TTTCACCCATGTCTTTAAAAATTCTATAAAAAGAAGGCAATGCGCGATGATTAGAAATTCGAGGA
A
Found at i:46363360 original size:23 final size:26
Alignment explanation
Indices: 46363334--46363383 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 26
46363324 GAATGGAAAA
*
46363334 AATGAGAGAAT-A-GTGAAA-GAGGG
1 AATGAAAGAATGATGTGAAATGAGGG
46363357 AATGAAAGAATGATGTGAAATGAGGG
1 AATGAAAGAATGATGTGAAATGAGGG
46363383 A
1 A
46363384 TGCTTTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 10 0.43
24 1 0.04
25 6 0.26
26 6 0.26
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (26 bp):
AATGAAAGAATGATGTGAAATGAGGG
Found at i:46367397 original size:39 final size:39
Alignment explanation
Indices: 46367343--46367494 Score: 232
Period size: 39 Copynumber: 3.9 Consensus size: 39
46367333 AATGTTCGAG
*
46367343 TGATATCCGGGCTAAGCCCGACGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
46367382 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
46367421 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
46367460 TGAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
46367495 GGTTACCATA
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:46367510 original size:40 final size:39
Alignment explanation
Indices: 46367343--46367524 Score: 213
Period size: 39 Copynumber: 4.6 Consensus size: 39
46367333 AATGTTCGAG
* * *
46367343 TGATATCCGGGCTAAGCCCGACGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
46367382 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
46367421 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
46367460 TGA-AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAA-CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
46367500 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
46367525 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 86 0.68
40 38 0.30
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:46375139 original size:27 final size:28
Alignment explanation
Indices: 46375083--46375152 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
46375073 TAATTTGTAC
46375083 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
46375111 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46375138 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
46375153 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:46381342 original size:42 final size:43
Alignment explanation
Indices: 46381282--46381397 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
46381272 ATATGTGTTA
*
46381282 TCGTGTAAGACGACGTCTGGGACGTTGGCATCG-TACTTGATT
1 TCGTGTAAGACGACGTCTGGGACGTTGGCATAGATACTTGATT
* ** *
46381324 TCGTGTAAGAC-CCTGTCTGGGACAATGGCATAGATATTTGATT
1 TCGTGTAAGACGAC-GTCTGGGACGTTGGCATAGATACTTGATT
* * *
46381367 ACATGTAAGACGACATCTGGGACGTTGGCAT
1 TCGTGTAAGACGACGTCTGGGACGTTGGCAT
46381398 TCTACGAGGT
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 27 0.45
43 31 0.52
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
TCGTGTAAGACGACGTCTGGGACGTTGGCATAGATACTTGATT
Found at i:46392711 original size:47 final size:48
Alignment explanation
Indices: 46392642--46392957 Score: 189
Period size: 46 Copynumber: 6.7 Consensus size: 48
46392632 TGTATACTGC
* *
46392642 CGATGCCATGTCCCAGACATGGTCTTACGCTCG-CTCATC-CATC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCAAATCGAAGT
**
46392689 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATCGAAGT
* * *
46392738 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTG-TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-A-ATC-GAAGT
* * ** *
46392788 CAATGCCATGTCCCAGACATGGTATTACACTGAC-A-CATCTC-ATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCGA-AGT
** * * ** *
46392834 CGATG-CATGTCTGAGACCT-GTCTTACACTGGCT-TACATCTCG-AGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CAAATCGAAGT
* ***
46392879 CTGATG-TATGTCCCAGACAT-GTCTTACACT-AGCTATCGTCTC-AA-T
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCAAATCGAAGT
46392924 GCTGATGCCATGTCCCAGACATGGTCTTACACTG
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTG
46392958 GCTCTCTTAA
Statistics
Matches: 218, Mismatches: 28, Indels: 44
0.75 0.10 0.15
Matches are distributed among these distances:
44 11 0.05
45 14 0.06
46 56 0.26
47 46 0.21
48 17 0.08
49 38 0.17
50 34 0.16
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCGAAGT
Found at i:46392759 original size:49 final size:47
Alignment explanation
Indices: 46392642--46393002 Score: 212
Period size: 47 Copynumber: 7.7 Consensus size: 47
46392632 TGTATACTGC
* * **
46392642 CGATGCCATGTCCCAGACATGGTCTTACGCTCG-CTCATC-CATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCAAATCTGGT
46392689 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATC-TGGT
* *
46392738 CGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-A-ATCTG-GT
* * ** * *
46392788 CAATGCCATGTCCCAGACATGGTATTACACTGAC-A-CATCTCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATC-TGGT
** * * * *
46392834 CGATG-CATGTCTGAGACCT-GTCTTACACTGGCT-T-ACATCTCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCT-G-GT
* *** *
46392879 CTGATG-TATGTCCCAGACAT-GTCTTACACT-AGCTATCGTCTCAATGCT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCAAATC--TGGT
* * * * *
46392927 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAATATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATCTGGT
*
46392974 CGATG-CATGTCCCAAACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
46393003 AGCACACACA
Statistics
Matches: 247, Mismatches: 42, Indels: 51
0.73 0.12 0.15
Matches are distributed among these distances:
43 1 0.00
44 14 0.06
45 13 0.05
46 52 0.21
47 62 0.25
48 27 0.11
49 42 0.17
50 35 0.14
51 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCTGGT
Found at i:46392816 original size:50 final size:49
Alignment explanation
Indices: 46392691--46392821 Score: 169
Period size: 49 Copynumber: 2.7 Consensus size: 49
46392681 CATCAAGTCG
* *
46392691 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGTGGCCA
*
46392740 ATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTC-ACATATC-TGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCGA-A-ATCGTG-GCCA
*
46392790 ATGCCATGTCCCAGACATGGTATTACACTGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGAC
46392822 ACATCTCATA
Statistics
Matches: 73, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
48 2 0.03
49 36 0.49
50 34 0.47
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGTGGCCA
Done.