Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 167 of 345
Found at i:46776928 original size:12 final size:12
Alignment explanation
Indices: 46776911--46776936 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46776901 TTTGTGATTT
46776911 ATTTCTCTCATA
1 ATTTCTCTCATA
46776923 ATTTCTCTCATA
1 ATTTCTCTCATA
46776935 AT
1 AT
46776937 AATCATCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTTCTCTCATA
Found at i:46779438 original size:14 final size:15
Alignment explanation
Indices: 46779419--46779447 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
46779409 AAGATTCATA
46779419 AAATATATT-TTTTT
1 AAATATATTCTTTTT
46779433 AAATATATTCTTTTT
1 AAATATATTCTTTTT
46779448 TGTATCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
AAATATATTCTTTTT
Found at i:46779891 original size:13 final size:14
Alignment explanation
Indices: 46779873--46779914 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
46779863 TTTCAATTCT
46779873 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
46779886 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
46779901 ATTTTAAATAATAT
1 ATTTT-AATAATAT
46779915 TCTTCAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:46779899 original size:16 final size:16
Alignment explanation
Indices: 46779877--46779913 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
46779867 AATTCTATTT
46779877 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
46779894 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
46779909 TAATA
1 TAATA
46779914 TTCTTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:46780396 original size:23 final size:26
Alignment explanation
Indices: 46780342--46780396 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 26
46780332 TACAAGGATT
46780342 TATGACATATTTTAACCTAGTTAGAAA
1 TATGACATATTTTAACCTAG-TAGAAA
*
46780369 TATGA-ATATTTTAA-CTA-TATAAA
1 TATGACATATTTTAACCTAGTAGAAA
46780392 TATGA
1 TATGA
46780397 GTTTTTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 10 0.37
25 3 0.11
26 9 0.33
27 5 0.19
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (26 bp):
TATGACATATTTTAACCTAGTAGAAA
Found at i:46781427 original size:12 final size:12
Alignment explanation
Indices: 46781410--46781439 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46781400 ACAATATCAT
*
46781410 AATAATCCTAAC
1 AATAATCCTAAA
46781422 AATAATCCTAAA
1 AATAATCCTAAA
46781434 AATAAT
1 AATAAT
46781440 ATTCAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAATCCTAAA
Found at i:46782038 original size:18 final size:17
Alignment explanation
Indices: 46782015--46782053 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
46782005 TTTTCCTTCG
46782015 TTTTA-TTTATTTATTTAT
1 TTTTATTTTA-TTA-TTAT
46782033 TTTTATTTTATTATTAT
1 TTTTATTTTATTATTAT
46782050 TTTT
1 TTTT
46782054 TTAATGCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTTATTATTAT
Found at i:46782046 original size:14 final size:16
Alignment explanation
Indices: 46782017--46782056 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
46782007 TTCCTTCGTT
46782017 TTATTTA-TTTATTTA
1 TTATTTATTTTATTTA
46782032 TT-TTTATTTTA-TTA
1 TTATTTATTTTATTTA
46782046 TTATTT-TTTTA
1 TTATTTATTTTA
46782057 ATGCTTAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTATTTATTTTATTTA
Found at i:46782054 original size:18 final size:18
Alignment explanation
Indices: 46782015--46782053 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
46782005 TTTTCCTTCG
46782015 TTTTATTTATTTATTTAT
1 TTTTATTTATTTATTTAT
46782033 TTTTATTT-TATTA-TTAT
1 TTTTATTTAT-TTATTTAT
46782050 TTTT
1 TTTT
46782054 TTAATGCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTATTTATTTATTTAT
Found at i:46783073 original size:14 final size:14
Alignment explanation
Indices: 46783051--46783082 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
46783041 AACATTGAAG
*
46783051 AAAATAAAGAAAAT
1 AAAAAAAAGAAAAT
46783065 AAAAAAAAGAAAAT
1 AAAAAAAAGAAAAT
46783079 AAAA
1 AAAA
46783083 TTGGGTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.09
Consensus pattern (14 bp):
AAAAAAAAGAAAAT
Found at i:46784285 original size:21 final size:21
Alignment explanation
Indices: 46784261--46784304 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
46784251 TTTTATAGAT
46784261 TCCTTTATT-TTTTGGTGAAAA
1 TCCTTTATTCTTTT-GTGAAAA
* *
46784282 TCCTTTGTTCTTTTTTGAAAA
1 TCCTTTATTCTTTTGTGAAAA
46784303 TC
1 TC
46784305 AACAGTTTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (21 bp):
TCCTTTATTCTTTTGTGAAAA
Found at i:46786848 original size:31 final size:31
Alignment explanation
Indices: 46786812--46786985 Score: 149
Period size: 31 Copynumber: 5.5 Consensus size: 31
46786802 TGTGTACAAT
*
46786812 GTGAAAAGTGGTAGCTTCGACTACCCGATCA
1 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
* *
46786843 GTGAAAAGTGATAGCTTC-AGCTACCTGATGA
1 GTGAAAAGTGGTAGCTTCGA-CTACCTGATCA
* * * *
46786874 GTGAAAAGTAGTAGCTTCGGCTACCTAATTA
1 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
*
46786905 GTGAAAAGTGGTAGC-TCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGA-CTACCTGATCA
* * * *
46786936 CTCAATAA-TGGTAGCTTCGGCTACAAGTGA-CAA
1 GTGAA-AAGTGGTAGCTTCGACTAC--CTGATC-A
*
46786969 GTGATAAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
46786986 TAGCTACACT
Statistics
Matches: 113, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
30 3 0.03
31 88 0.78
32 7 0.06
33 15 0.13
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGACTACCTGATCA
Found at i:46786880 original size:62 final size:62
Alignment explanation
Indices: 46786812--46786959 Score: 190
Period size: 62 Copynumber: 2.4 Consensus size: 62
46786802 TGTGTACAAT
* * * *
46786812 GTGAAAAGTGGTAGCTTCGACTACCCGATCAGTGAAAAGTGATAGCTTCAGCTACCTGATGA
1 GTGAAAAGTGGTAGCTTCGGCTACCCAATCAGTGAAAAGTGATAGCTCCAGCTACCTGATCA
* * * *
46786874 GTGAAAAGTAGTAGCTTCGGCTACCTAATTAGTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCCAATCAGTGAAAAGTGATAGCTCCAGCTACCTGATCA
* *
46786936 CTCAATAA-TGGTAGCTTCGGCTAC
1 GTGAA-AAGTGGTAGCTTCGGCTAC
46786960 AAGTGACAAG
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
62 72 0.97
63 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (62 bp):
GTGAAAAGTGGTAGCTTCGGCTACCCAATCAGTGAAAAGTGATAGCTCCAGCTACCTGATCA
Found at i:46787079 original size:27 final size:27
Alignment explanation
Indices: 46787049--46787113 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
46787039 TAGTTGAACT
* *
46787049 ATGGCAAAGTTATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
46787076 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
46787103 ATAGCAAAGTG
1 ATGGCAAAGTG
46787114 TTCAGTGATC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:46787186 original size:34 final size:34
Alignment explanation
Indices: 46787163--46787230 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
46787153 TGATCCATGG
* *
46787163 CAAAG-TGTGAAACGTAGGTATGGTATTTCCATA
1 CAAAGCTGTGAAACGTAGGAATGGTATATCCATA
* * *
46787196 CCAAGCTGTGAAACGTAGGAATGGTGTTTCCATA
1 CAAAGCTGTGAAACGTAGGAATGGTATATCCATA
46787230 C
1 C
46787231 TGAGTTGTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 4 0.13
34 27 0.87
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (34 bp):
CAAAGCTGTGAAACGTAGGAATGGTATATCCATA
Found at i:46791643 original size:29 final size:31
Alignment explanation
Indices: 46791594--46791652 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
46791584 AATGTGTATC
* *
46791594 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTAGAGATAG
46791623 TATTTATTATAATAGAT-AAATGTAGAGATA
1 TATTTATT-TAATAGATGAAATGTAGAGATA
46791653 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTAGAGATAG
Found at i:46801829 original size:26 final size:24
Alignment explanation
Indices: 46801779--46801830 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
46801769 CATGAAATAA
* * *
46801779 GAAAAAGAATGAAGAAAATAAAGG
1 GAAAAAAAATGAACAAAACAAAGG
46801803 GAAAAAAAATGAACAAAAGCAAGAGG
1 GAAAAAAAATGAACAAAA-CAA-AGG
46801829 GA
1 GA
46801831 GGAGATTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 16 0.70
25 2 0.09
26 5 0.22
ACGTcount: A:0.65, C:0.04, G:0.25, T:0.06
Consensus pattern (24 bp):
GAAAAAAAATGAACAAAACAAAGG
Found at i:46811417 original size:27 final size:28
Alignment explanation
Indices: 46811387--46811485 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
46811377 TAGTGAGTCT
46811387 GCACACTTAGTGCTATAAAATC-AACTC
1 GCACACTTAGTGCTATAAAATCAAACTC
* *
46811414 GCACACCTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATAAAATCAAACTC
* * *
46811442 GCACACTTAGTGCTGTACAAATTTAAAACCC
1 GCACACTTAGTGCTATA-AAA--TCAAACTC
46811473 GCACACTTAGTGC
1 GCACACTTAGTGC
46811486 AATCTCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
27 20 0.33
28 20 0.33
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.25
Consensus pattern (28 bp):
GCACACTTAGTGCTATAAAATCAAACTC
Found at i:46812336 original size:7 final size:7
Alignment explanation
Indices: 46812326--46812350 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
46812316 TCATCACCAC
46812326 AACATCA
1 AACATCA
46812333 AACATCA
1 AACATCA
46812340 AACATCA
1 AACATCA
46812347 AACA
1 AACA
46812351 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:46820730 original size:28 final size:28
Alignment explanation
Indices: 46820661--46820761 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
46820651 GACAAGATTG
* * * *
46820661 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
46820691 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
46820719 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
46820748 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
46820762 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:46822840 original size:40 final size:40
Alignment explanation
Indices: 46822785--46822927 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
46822775 TGGATGATAA
* *
46822785 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-TAT
*
46822825 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
46822865 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
46822905 CCGGGCTACGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
46822928 CAAGCGAGTA
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 95 0.99
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:46822943 original size:40 final size:40
Alignment explanation
Indices: 46822785--46822948 Score: 215
Period size: 40 Copynumber: 4.1 Consensus size: 40
46822775 TGGATGATAA
* * * *
46822785 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
46822825 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
46822865 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* **
46822905 CCGGGCTACGTCCCGAAGGCATTCAAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
46822945 CCGG
1 CCGG
46822949 TTAAATCCCA
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.03
40 110 0.97
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:46825098 original size:23 final size:22
Alignment explanation
Indices: 46825052--46825115 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
46825042 TCTTCTTTAC
*
46825052 TATTCTAA-TCTTTTAT-TTAT
1 TATTCTAATTATTTTATCTTAT
*
46825072 TATTCT-ATTTTATTTATCTTAGT
1 TATTCTAATTAT-TTTATCTTA-T
*
46825095 TATTTTAATTATTTTATCTTA
1 TATTCTAATTATTTTATCTTA
46825116 CTTGGATTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
19 1 0.03
20 8 0.22
21 5 0.14
22 3 0.08
23 15 0.42
24 4 0.11
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.66
Consensus pattern (22 bp):
TATTCTAATTATTTTATCTTAT
Found at i:46828542 original size:47 final size:47
Alignment explanation
Indices: 46828491--46828781 Score: 494
Period size: 47 Copynumber: 6.1 Consensus size: 47
46828481 ATTAAAAATT
46828491 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
46828538 TGTGAAAGAGTATATATGTGATAAGG-CTCAATGGCCAATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAA
*
46828585 TGTGAAAGAGTATATATTTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
46828632 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGAG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
46828681 TGTGAAAGAGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
46828728 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
46828775 TGTGAAA
1 TGTGAAA
46828782 CATATGTGTG
Statistics
Matches: 229, Mismatches: 11, Indels: 8
0.92 0.04 0.03
Matches are distributed among these distances:
46 2 0.01
47 181 0.79
48 2 0.01
49 44 0.19
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:46828722 original size:143 final size:143
Alignment explanation
Indices: 46828501--46828780 Score: 508
Period size: 143 Copynumber: 2.0 Consensus size: 143
46828491 TGTGAAAGAG
46828501 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCT
* * *
46828566 CAATGGCCAATGTGATGAATGTGAAAGAGTATATATTTGATAAGGCCTAATGGCCGATGTGATGA
66 CAATAGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
46828631 ATGTGAAGGTGTA
131 ATGTGAAGGTGTA
46828644 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGC-
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCT
*
46828708 CTAATAGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
66 C-AATAGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
46828773 AATGTGAA
130 AATGTGAA
46828781 ACATATGTGT
Statistics
Matches: 132, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
142 1 0.01
143 131 0.99
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (143 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCT
CAATAGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
ATGTGAAGGTGTA
Found at i:46828827 original size:48 final size:48
Alignment explanation
Indices: 46828773--46828972 Score: 346
Period size: 48 Copynumber: 4.2 Consensus size: 48
46828763 CAATGTGATG
* *
46828773 AATGTGAAACATATGTGTGATATGTATATGTGGTAAATCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
46828821 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
46828869 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
46828917 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
46828965 AATGTGAA
1 AATGTGAA
46828973 TGTTGTAACA
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:46829066 original size:37 final size:37
Alignment explanation
Indices: 46829012--46829102 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
46829002 AACTTGGAAA
*
46829012 TATGTTCCGGGTGAGACCCGATAACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATAACTACGTGTGGAGAT
*
46829050 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATAACTACGTGTGGAGAT
46829087 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
46829103 TTCGTAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 47 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATAACTACGTGTGGAGAT
Found at i:46836974 original size:30 final size:31
Alignment explanation
Indices: 46836918--46836980 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
46836908 CCTTTTCATA
*
46836918 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
46836949 TTTCAAATTTCATATTACT-GGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
46836979 TT
1 TT
46836981 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:46837225 original size:24 final size:24
Alignment explanation
Indices: 46837173--46837337 Score: 230
Period size: 23 Copynumber: 7.0 Consensus size: 24
46837163 GCTTTATCAT
*
46837173 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
46837198 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
46837222 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
46837245 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
46837269 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
46837292 GTAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
46837315 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
46837338 TCACTTCCTC
Statistics
Matches: 126, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
22 3 0.02
23 57 0.45
24 54 0.43
25 12 0.10
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:46837248 original size:47 final size:47
Alignment explanation
Indices: 46837194--46837336 Score: 234
Period size: 47 Copynumber: 3.1 Consensus size: 47
46837184 CCTAGCCTCT
*
46837194 TTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
46837241 TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
** *
46837288 TTTTGTAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
46837334 TTT
1 TTT
46837337 TTCACTTCCT
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 25 0.28
47 65 0.72
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:46837452 original size:20 final size:20
Alignment explanation
Indices: 46837387--46837453 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
46837377 TTATGAATAC
* *
46837387 ATCAAGTGCATATCATACGT
1 ATCATGTGCATATCATACAT
*
46837407 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
46837427 GTCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
*
46837447 ACCATGT
1 ATCATGT
46837454 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:46838749 original size:27 final size:27
Alignment explanation
Indices: 46838687--46838764 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
46838677 GGGCATATTC
46838687 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
46838714 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
46838741 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
46838765 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:46838995 original size:79 final size:79
Alignment explanation
Indices: 46838895--46839082 Score: 251
Period size: 79 Copynumber: 2.4 Consensus size: 79
46838885 TGTAAATCAG
*
46838895 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAATCC-AGTGGTA-TTTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATTTTA
*
46838958 GTAATTTTACA-AGCTA
65 GCAA-TTTACAGA-CTA
*
46838974 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTAG
46839039 CAATTTACAGACTA
66 CAATTTACAGACTA
* ** *
46839053 GGG--TTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
46839083 AAACAATAAT
Statistics
Matches: 99, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
77 23 0.23
79 66 0.67
80 10 0.10
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (79 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTAG
CAATTTACAGACTA
Found at i:46839043 original size:27 final size:27
Alignment explanation
Indices: 46838782--46839068 Score: 151
Period size: 27 Copynumber: 10.8 Consensus size: 27
46838772 TTTCATCCTA
* * * *
46838782 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * **
46838809 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * *
46838836 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-C
* ** *
46838865 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAAC
* * *
46838892 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
** ** * *
46838919 TGAGGGTATTTCGGTAATTTCACAATC
1 CAAGGGTATTTTAGTAATTTTACAAAC
*
46838946 C-AGTGGTA-TTTAGTAATTTTAC-AAG
1 CAAG-GGTATTTTAGTAATTTTACAAAC
* * *
46838971 CTAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
** **
46838998 TGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* *
46839025 CAAGGGTATTTTAGCAA-TTTACAGA-
1 CAAGGGTATTTTAGTAATTTTACAAAC
*
46839050 CTAGGG--TTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
46839069 GTAAATCGAG
Statistics
Matches: 202, Mismatches: 48, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
23 8 0.04
24 3 0.01
25 11 0.05
26 36 0.18
27 115 0.57
28 14 0.07
29 15 0.07
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAC
Found at i:46839154 original size:26 final size:27
Alignment explanation
Indices: 46839060--46839172 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 27
46839050 CTAGGGTTTT
* * *
46839060 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
* *
46839087 AATAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
46839114 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
* *
46839141 GGT-ATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
46839167 -GTAATT
1 AGTAATT
46839173 TGTAAGTAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
25 2 0.03
26 25 0.32
27 51 0.65
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.28
Consensus pattern (27 bp):
AGTAATTCTATAAATCAAGGGTAAAAC
Found at i:46839291 original size:26 final size:26
Alignment explanation
Indices: 46839188--46839280 Score: 145
Period size: 26 Copynumber: 3.6 Consensus size: 26
46839178 GTAAAGGTAA
46839188 ATGT-AATCGAGGGT-AAATGGTAATT
1 ATGTAAATCG-GGGTAAAATGGTAATT
46839213 ATGTAAATCAGGGGTAAAATGGTAATT
1 ATGTAAATC-GGGGTAAAATGGTAATT
46839240 ATGTAAATCGGGGTAAAATGGTAATT
1 ATGTAAATCGGGGTAAAATGGTAATT
*
46839266 CTGTAAATCGGGGTA
1 ATGTAAATCGGGGTA
46839281 CTTTGGTAAT
Statistics
Matches: 64, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
25 4 0.06
26 39 0.61
27 21 0.33
ACGTcount: A:0.37, C:0.05, G:0.28, T:0.30
Consensus pattern (26 bp):
ATGTAAATCGGGGTAAAATGGTAATT
Found at i:46839316 original size:27 final size:26
Alignment explanation
Indices: 46839286--46839374 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 26
46839276 GGGTACTTTG
46839286 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
46839313 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
46839340 GTATTTTTACAAACTAAGGTATTTCG
1 GTAATTTTACAATCGAAGGTATTTCA
46839366 GTAATTTTA
1 GTAATTTTA
46839375 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.37
27 32 0.59
28 2 0.04
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:46839317 original size:53 final size:53
Alignment explanation
Indices: 46839260--46839371 Score: 120
Period size: 53 Copynumber: 2.1 Consensus size: 53
46839250 GGGTAAAATG
** * *
46839260 GTAATTCTGTAAATCG-GGGTACTTT-GGTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTCTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGTATTTCA
* * * *
46839313 GTAATTTTACAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGTATTTCG
1 GTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGTATTTCA
46839366 GTAATT
1 GTAATT
46839372 TTAGTAAACT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
53 33 0.67
54 16 0.33
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (53 bp):
GTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGTATTTCA
Found at i:46839380 original size:27 final size:26
Alignment explanation
Indices: 46839286--46839389 Score: 109
Period size: 27 Copynumber: 3.9 Consensus size: 26
46839276 GGGTACTTTG
* *
46839286 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACTAAGGTATTTCA
* *
46839313 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CTAAGGTATTTCA
* *
46839340 GTATTTTTACAAACTAAGGTATTTCG
1 GTAATTTTACAAACTAAGGTATTTCA
* *
46839366 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAGGTATT
46839390 CTAAACAGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 18 0.27
27 48 0.73
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAACTAAGGTATTTCA
Found at i:46842384 original size:24 final size:24
Alignment explanation
Indices: 46842331--46842498 Score: 198
Period size: 24 Copynumber: 7.0 Consensus size: 24
46842321 TGCTTTATCA
* *
46842331 TATAACTGGAGGCCT-AGCCTTTTT
1 TATAACTGG-GGCATAAGCCCTTTT
*
46842355 TAATAACTGGGGCAAAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
*
46842380 TATAACTAGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
* * *
46842403 AATAACTGGGGCGTAACCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
*
46842427 GATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
* *
46842451 GATAACTAGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
*
46842474 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
46842498 T
1 T
46842499 CACTTCCTCC
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
23 40 0.32
24 67 0.54
25 17 0.14
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
TATAACTGGGGCATAAGCCCTTTT
Found at i:46842445 original size:71 final size:71
Alignment explanation
Indices: 46842352--46842497 Score: 247
Period size: 71 Copynumber: 2.1 Consensus size: 71
46842342 GCCTAGCCTT
* *
46842352 TTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTAGGGCATAAGCCCTTTAATAACTGGGGCGT
1 TTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGGGCAT
46842417 AACCCC
66 AACCCC
* *
46842423 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGGGCAT
1 TTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGGGCAT
*
46842488 AAGCCC
66 AACCCC
46842494 TTTT
1 TTTT
46842498 TCACTTCCTC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (71 bp):
TTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGGGCAT
AACCCC
Found at i:46842497 original size:47 final size:48
Alignment explanation
Indices: 46842352--46842497 Score: 206
Period size: 47 Copynumber: 3.1 Consensus size: 48
46842342 GCCTAGCCTT
* * *
46842352 TTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTAGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* * *
46842400 -TTTAATAACTGGGGCGTAACCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
46842447 TTTTGATAACTAGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
46842494 TTTT
1 TTTT
46842498 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
47 68 0.78
48 19 0.22
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (48 bp):
TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:46842575 original size:20 final size:20
Alignment explanation
Indices: 46842547--46842613 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
46842537 TTATGAATAC
* *
46842547 ATCAAGTGCATATCATACGT
1 ATCATGTGCATATCATACAT
46842567 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
46842587 GTCATGCGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
46842607 ACCATGT
1 ATCATGT
46842614 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:46842682 original size:25 final size:25
Alignment explanation
Indices: 46842650--46842697 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46842640 ATACATAAAC
* * *
46842650 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
46842675 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
46842698 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:46843867 original size:27 final size:26
Alignment explanation
Indices: 46843837--46843908 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 26
46843827 TGTCATTCCA
46843837 TACAGGGGTATTACGGTCACTTTACCC
1 TACAGGGGT-TTACGGTCACTTTACCC
46843864 TACAGGGGCTTTACGGTCACTTTACCC
1 TACAGGGG-TTTACGGTCACTTTACCC
*
46843891 TACAGAGGCTTTACGGTC
1 TACAG-GGGTTTACGGTC
46843909 TTTTTACCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 39 0.93
28 3 0.07
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (26 bp):
TACAGGGGTTTACGGTCACTTTACCC
Found at i:46843916 original size:27 final size:27
Alignment explanation
Indices: 46843847--46843908 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
46843837 TACAGGGGTA
*
46843847 TTACGGTCACTTTACCCTACAGGGGCT
1 TTACGGTCACTTTACCCTACAGAGGCT
46843874 TTACGGTCACTTTACCCTACAGAGGCT
1 TTACGGTCACTTTACCCTACAGAGGCT
46843901 TTACGGTC
1 TTACGGTC
46843909 TTTTTACCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTACAGAGGCT
Found at i:46844000 original size:27 final size:27
Alignment explanation
Indices: 46843970--46844021 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
46843960 GTAAATCTAC
46843970 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
46843997 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
46844022 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:46844083 original size:27 final size:27
Alignment explanation
Indices: 46844053--46844215 Score: 172
Period size: 27 Copynumber: 6.0 Consensus size: 27
46844043 GTAACTTTGT
46844053 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
46844080 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
46844107 AAA-CTAGTGGTATTTTAGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
46844134 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* *
46844161 AAAT-TGAGGGTATTTTTGTAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * *
46844188 AAACCAAGGGTATTTTAGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
46844215 A
1 A
46844216 GACTAGGGTT
Statistics
Matches: 114, Mismatches: 16, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
26 2 0.02
27 111 0.97
28 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:46844119 original size:54 final size:53
Alignment explanation
Indices: 46844060--46844252 Score: 217
Period size: 54 Copynumber: 3.6 Consensus size: 53
46844050 TGTAAATCAG
* ** * *
46844060 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTA
1 GGGTATTTTAGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACTA
* *
46844113 GTGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTAGTAATTTTACAAACCGA-GGGTATTTTGGTAATTTTACAAACT-A
* * * *
46844168 GGGTATTTTTGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAGACTA
1 GGGTATTTTAGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACTA
* ** *
46844221 GGGTTTTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTAGTAATTTTACAAACCGAGGGTA
46844253 AAACAGTAAT
Statistics
Matches: 119, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
53 29 0.24
54 86 0.72
55 4 0.03
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (53 bp):
GGGTATTTTAGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACTA
Found at i:46844153 original size:81 final size:81
Alignment explanation
Indices: 46844058--46844252 Score: 277
Period size: 81 Copynumber: 2.4 Consensus size: 81
46844048 TTTGTAAATC
*
46844058 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CTAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATTT
46844122 TAGTAATTTTACAAACT
65 TAGTAATTTTACAAACT
** *
46844139 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
*
46844204 AGTAATTTTACAGACT
66 AGTAATTTTACAAACT
* * ** *
46844220 A-GGGTTTTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
46844253 AAACAGTAAT
Statistics
Matches: 103, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
80 27 0.26
81 73 0.71
82 3 0.03
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
AGTAATTTTACAAACT
Found at i:46844425 original size:27 final size:27
Alignment explanation
Indices: 46844231--46844414 Score: 215
Period size: 27 Copynumber: 6.8 Consensus size: 27
46844221 GGGTTTTTTA
* * **
46844231 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCGGGGGTAAAATG
* ** * **
46844258 GTAATTCTGTAAATCAAGGGTTAAACA
1 GTAATTATGTAAATCGGGGGTAAAATG
* * *
46844285 GTAATTCTATAAATCGGGGGTAAAATA
1 GTAATTATGTAAATCGGGGGTAAAATG
*
46844312 GTAATTATGTAAATCGAGGGTAAAATG
1 GTAATTATGTAAATCGGGGGTAAAATG
* *
46844339 GTAATTATGTAAATCAGGGGTAAAAAG
1 GTAATTATGTAAATCGGGGGTAAAATG
46844366 GTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTATGTAAATCGGGGGTAAAATG
*
46844393 GTAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATCGGGGGTA
46844415 CTTTGGTAAT
Statistics
Matches: 139, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
GTAATTATGTAAATCGGGGGTAAAATG
Found at i:46844425 original size:81 final size:81
Alignment explanation
Indices: 46844229--46844414 Score: 257
Period size: 81 Copynumber: 2.3 Consensus size: 81
46844219 TAGGGTTTTT
* ** * * * *
46844229 TAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTTAAACAGTAATTCTA
1 TAGTAATTATGTAAATCGAGGGTAAAATGGTAATTATGTAAATCAAGGGGTAAAAAGTAATTATA
46844294 TAAATCGGGGGTAAAA
66 TAAATCGGGGGTAAAA
46844310 TAGTAATTATGTAAATCGAGGGTAAAATGGTAATTATGTAAATC-AGGGGTAAAAAGGTAATTAT
1 TAGTAATTATGTAAATCGAGGGTAAAATGGTAATTATGTAAATCAAGGGGTAAAAA-GTAATTAT
*
46844374 GTAAATCGGGGGTAAAA
65 ATAAATCGGGGGTAAAA
* * *
46844391 TGGTAATTCTGTAAATCGGGGGTA
1 TAGTAATTATGTAAATCGAGGGTA
46844415 CTTTGGTAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 9 0.10
81 84 0.90
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (81 bp):
TAGTAATTATGTAAATCGAGGGTAAAATGGTAATTATGTAAATCAAGGGGTAAAAAGTAATTATA
TAAATCGGGGGTAAAA
Found at i:46844441 original size:27 final size:27
Alignment explanation
Indices: 46844420--46844509 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
46844410 GGGTACTTTG
*
46844420 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
46844447 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
46844474 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
46844501 GTAATTTTA
1 GTAATTTTA
46844510 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:46844461 original size:54 final size:54
Alignment explanation
Indices: 46844403--46844509 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
46844393 GTAATTCTGT
* * *
46844403 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAAG-GTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGCGTATTTCAGTAATTTTAC
* * *
46844457 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGCGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGCGTATTTCAGTAATTTTA
46844510 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.16
54 38 0.84
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGCGTATTTCAGTAATTTTAC
Found at i:46844523 original size:27 final size:27
Alignment explanation
Indices: 46844420--46844524 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
46844410 GGGTACTTTG
* *
46844420 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
46844447 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
46844474 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
46844501 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
46844525 CTAAACAGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:46853918 original size:40 final size:40
Alignment explanation
Indices: 46853872--46854074 Score: 293
Period size: 40 Copynumber: 5.1 Consensus size: 40
46853862 CGGGATTTAA
* *
46853872 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGC
*
46853912 CCGGATATAGTAACTCGCACGAATGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
46853952 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* *
46853992 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
* * * *
46854032 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGC
46854072 CCG
1 CCG
46854075 ATTATCATCC
Statistics
Matches: 151, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
Found at i:46863124 original size:30 final size:30
Alignment explanation
Indices: 46863079--46863138 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
46863069 ATTTGATACG
* *
46863079 AACTTTGGCAAAATTATATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
* *
46863109 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
46863139 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.43
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:46865799 original size:28 final size:29
Alignment explanation
Indices: 46865728--46865829 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
46865718 GTGACGAGAT
46865728 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
46865757 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
46865786 T-GCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
46865814 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
46865830 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 24 0.37
29 41 0.63
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:46873717 original size:29 final size:29
Alignment explanation
Indices: 46873684--46873786 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
46873674 GTGACGAGAT
46873684 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
46873713 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
46873742 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
46873771 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
46873787 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:46879888 original size:34 final size:34
Alignment explanation
Indices: 46879835--46879911 Score: 91
Period size: 34 Copynumber: 2.3 Consensus size: 34
46879825 CCCTTTTAGT
* * * * *
46879835 GCCTTAGCCTATTTTAGTAACCGTAGCGGTCTGG
1 GCCTAAGCCTATTTCAGTAACAGTAACAGTCTGG
* *
46879869 GCCTAAGCCTGTTTCAGTAATAGTAACAGTCTGG
1 GCCTAAGCCTATTTCAGTAACAGTAACAGTCTGG
46879903 GCCTAAGCC
1 GCCTAAGCC
46879912 CATTAACATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (34 bp):
GCCTAAGCCTATTTCAGTAACAGTAACAGTCTGG
Found at i:46879927 original size:34 final size:33
Alignment explanation
Indices: 46879863--46879931 Score: 77
Period size: 34 Copynumber: 2.1 Consensus size: 33
46879853 AACCGTAGCG
** *
46879863 GTCTGGGCCTAAGCCTGTTTCAGTAATAGTAACA
1 GTCTGGGCCTAAGCCCATTACAGTAATAGT-ACA
*
46879897 GTCTGGGCCTAAGCCCATTAACA-TATTAGTACA
1 GTCTGGGCCTAAGCCCATT-ACAGTAATAGTACA
46879930 GT
1 GT
46879932 ATGCAAACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
33 5 0.17
34 23 0.77
35 2 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (33 bp):
GTCTGGGCCTAAGCCCATTACAGTAATAGTACA
Found at i:46891273 original size:49 final size:49
Alignment explanation
Indices: 46891147--46891565 Score: 655
Period size: 49 Copynumber: 8.8 Consensus size: 49
46891137 CCCTTCGGGA
* * * * * *
46891147 CTTATCACAT-T-TATACA-TTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATACACACTTT-CACATTCATCACATCGGCCATTAGGC
* *
46891194 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
46891241 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
46891290 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
46891339 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
46891388 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
46891437 C---T----TATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
46891479 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
46891528 CTTATCACATATATATACACTTTCACATTCATCACATC
1 CTTATCACATATATACACACTTTCACATTCATCACATC
46891566 TGTGACAGCC
Statistics
Matches: 351, Mismatches: 9, Indels: 22
0.92 0.02 0.06
Matches are distributed among these distances:
42 41 0.12
45 1 0.00
46 1 0.00
47 47 0.13
48 4 0.01
49 257 0.73
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46891444 original size:42 final size:42
Alignment explanation
Indices: 46891397--46891532 Score: 209
Period size: 42 Copynumber: 3.1 Consensus size: 42
46891387 CCTTATCACA
46891397 TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
46891439 TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 TATATACACACTTTCACATTCATCACATCGGCCATTAGGCC---T
46891484 CACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 ----TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
46891530 TAT
1 TAT
46891533 CACATATATA
Statistics
Matches: 87, Mismatches: 0, Indels: 14
0.86 0.00 0.14
Matches are distributed among these distances:
42 44 0.51
45 1 0.01
46 1 0.01
49 41 0.47
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (42 bp):
TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:46891491 original size:91 final size:91
Alignment explanation
Indices: 46891348--46891532 Score: 370
Period size: 91 Copynumber: 2.0 Consensus size: 91
46891338 CCTTATCACA
46891348 TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCA
1 TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCA
46891413 CATTCATCACATCGGCCATTAGGCCT
66 CATTCATCACATCGGCCATTAGGCCT
46891439 TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCA
1 TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCA
46891504 CATTCATCACATCGGCCATTAGGCCT
66 CATTCATCACATCGGCCATTAGGCCT
46891530 TAT
1 TAT
46891533 CACATATATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 94 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (91 bp):
TATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCA
CATTCATCACATCGGCCATTAGGCCT
Found at i:46891522 original size:140 final size:142
Alignment explanation
Indices: 46891168--46891565 Score: 651
Period size: 140 Copynumber: 2.8 Consensus size: 142
46891158 TATACATTTC
* * * * * * *
46891168 CACATCCATCACTTTGGCCACTCGGCCCTATCACATATAT--ACACTTTCACATTCATCACATTG
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
46891231 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
66 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-T-T-
46891296 ACATATATACACACTTT
128 --ATATATACACACTTT
46891313 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
*
46891378 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCC-T-TA
66 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATA
46891441 TATACACACTTT
131 TATACACACTTT
46891453 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
1 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
46891518 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
66 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
46891566 TGTGACAGCC
Statistics
Matches: 242, Mismatches: 9, Indels: 9
0.93 0.03 0.03
Matches are distributed among these distances:
140 126 0.52
144 1 0.00
145 34 0.14
147 81 0.33
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (142 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATA
TATACACACTTT
Found at i:46893269 original size:40 final size:40
Alignment explanation
Indices: 46893214--46893463 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
46893204 AACATTGGAA
46893214 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
46893254 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
46893294 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
46893334 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
46893374 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
46893413 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
46893454 CTATATCCGG
1 ATATATCCGG
46893464 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:46899812 original size:15 final size:15
Alignment explanation
Indices: 46899792--46899824 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
46899782 CCGTAGCTAG
46899792 AAAGAAAGAAAAAAA
1 AAAGAAAGAAAAAAA
46899807 AAAGAAAGAAAAAAA
1 AAAGAAAGAAAAAAA
46899822 AAA
1 AAA
46899825 ACAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAAAAA
Found at i:46899814 original size:19 final size:18
Alignment explanation
Indices: 46899790--46899825 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
46899780 TGCCGTAGCT
46899790 AGAAAGAAAGAAAAAAAAA
1 AGAAAGAAA-AAAAAAAAA
46899809 AGAAAGAAAAAAAAAAA
1 AGAAAGAAAAAAAAAAA
46899826 CAAAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAAGAAAAAAAAAAAA
Found at i:46901094 original size:40 final size:40
Alignment explanation
Indices: 46901039--46901288 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
46901029 AACATTGGAA
46901039 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
46901079 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
46901119 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
46901159 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
46901199 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
46901238 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
46901279 CTATATCCGG
1 ATATATCCGG
46901289 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:46903278 original size:40 final size:40
Alignment explanation
Indices: 46903150--46903355 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
46903140 TGAATGATAC
* * *
46903150 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
46903190 CCGGG-TAAGACCCGAAGGCATTTGTGCGAGTTG-TATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
46903228 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *** *
46903268 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
46903308 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
46903348 CC-GGCTAA
1 CCGGGCTAA
46903356 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 10 0.07
39 54 0.38
40 79 0.55
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:46911474 original size:80 final size:78
Alignment explanation
Indices: 46911277--46911493 Score: 238
Period size: 80 Copynumber: 2.7 Consensus size: 78
46911267 TGAATGATAC
* * *
46911277 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCAGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTT-TGCTAGTGGTTATATCC-GGCTAAGACCCGAAGGCATTTG
* * * *
46911342 TGCGAGTTGCTATAG
64 TGCAAGTTACCAAAG
* * * * *
46911357 CCAGGCTAAGACTCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATT-TTGCTAGTGGTTATATCC-GGCTAAGACCCGAAGGCATTTG
*
46911422 TGCAAGTTACCAAAT
64 TGCAAGTTACCAAAG
* *
46911437 CCGGGTTAAGACCCGAAGGCAATTTTGCTTGTGGTTATATCCGGCTAA-ATCCCGAAG
1 CCGGGCTAAGACCCGAAGGC-ATTTTGCTAGTGGTTATATCCGGCTAAGA-CCCGAAG
46911494 AAACTTGGTT
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.12
80 96 0.85
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGACCCGAAGGCATTTTGCTAGTGGTTATATCCGGCTAAGACCCGAAGGCATTTGTG
CAAGTTACCAAAG
Found at i:46911479 original size:40 final size:40
Alignment explanation
Indices: 46911277--46911493 Score: 208
Period size: 40 Copynumber: 5.5 Consensus size: 40
46911267 TGAATGATAC
* * *
46911277 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* * * *
46911317 CCAGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
46911357 CCAGGCTAAGACTCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *** *
46911397 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
46911437 CCGGGTTAAGACCCGAAGGCAATTT-TGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTTGTGCGAGTTGTTATAT
46911477 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
46911494 AAACTTGGTT
Statistics
Matches: 145, Mismatches: 29, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 126 0.87
41 6 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:46915153 original size:48 final size:48
Alignment explanation
Indices: 46915046--46915365 Score: 231
Period size: 48 Copynumber: 6.7 Consensus size: 48
46915036 TATGTGTGCT
* * * ** *
46915046 AGTGTAAGACTATGTCTGGGACATGGCATCGG-TA-TTGGTATGTGTTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAT--TATGAGAGCC
* *
46915094 ACTGTAAGACCATGTTTGGGACATGGCATCGGCTACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGCC
* *** ** * *
46915142 AGTGTAGGACCATGTCTAAAACATGGCATCGGCATTGA-TATGTA-TGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACATTATG-AGAGCC
* ** * *
46915190 AGTGTAAGACCATGTCTGGAACATGGCATTAGCCACATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGCC
* * * * ** * *
46915238 AGTGTAAGACCATATCTGGGGCATGGCATTGGTGTTGA-TATGTA-TGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACATTATG-AGAGCC
* * *
46915286 AGTGTAAGACCATGTCTAGGACATGGCATC-ACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGCC
* *
46915333 AATGTAAGACCATGCCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
46915366 AATTTACCAT
Statistics
Matches: 206, Mismatches: 55, Indels: 22
0.73 0.19 0.08
Matches are distributed among these distances:
46 2 0.01
47 35 0.17
48 161 0.78
49 7 0.03
50 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGCC
Found at i:46915214 original size:96 final size:94
Alignment explanation
Indices: 46915046--46915366 Score: 399
Period size: 96 Copynumber: 3.4 Consensus size: 94
46915036 TATGTGTGCT
* * * * * * *
46915046 AGTGTAAGACTATGTCTGGGACATGGCATCGGTATTGGTATGTGTTCTACTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
*
46915111 GGGACATGGCATCGGCTACATTATGAGAGCC
66 -GGACATGGCATC-GCCACATTATGAGAGCC
* ***
46915142 AGTGTAGGACCATGTCTAAAACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
* *
46915207 GGAACATGGCATTAGCCACATTATGAGAGTC
66 GG-ACATGGCA-TCGCCACATTATGAGAGCC
* * * **
46915238 AGTGTAAGACCATATCTGGGGCATGGCATTGGTGTTGATATGTATGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
*
46915303 AGGACATGGCATCACCACATTATGAGAGCC
66 -GGACATGGCATCGCCACATTATGAGAGCC
* *
46915333 AATGTAAGACCATGCCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
46915367 ATTTACCATC
Statistics
Matches: 189, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
95 45 0.24
96 141 0.75
97 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
GGACATGGCATCGCCACATTATGAGAGCC
Found at i:46931721 original size:40 final size:40
Alignment explanation
Indices: 46931676--46931843 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
46931666 CGGAATATAA
46931676 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
46931716 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
46931756 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46931796 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
46931836 CCGGATAT
1 CCGGATAT
46931844 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 105 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46936651 original size:29 final size:29
Alignment explanation
Indices: 46936619--46936725 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
46936609 ATACCCTCCG
** *
46936619 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
46936648 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
46936677 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
46936706 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
46936726 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:46937921 original size:19 final size:17
Alignment explanation
Indices: 46937885--46937941 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 17
46937875 AATGAACACT
* *
46937885 TTTTTTTTTTTCTTTTC
1 TTTTTTTTCTTCATTTC
46937902 TTTGTTTTTCTTCATATTC
1 TTT-TTTTTCTTCAT-TTC
*
46937921 TCTTTTTTTTTTCATTTC
1 T-TTTTTTTCTTCATTTC
46937939 TTT
1 TTT
46937942 ATTCTTCCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 5 0.15
18 13 0.38
19 14 0.41
20 2 0.06
ACGTcount: A:0.05, C:0.14, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTTTTTCTTCATTTC
Found at i:46937924 original size:21 final size:18
Alignment explanation
Indices: 46937886--46937939 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
46937876 ATGAACACTT
46937886 TTTTTTTTTTC-TTT-TC
1 TTTTTTTTTTCATTTCTC
46937902 TTTGTTTTTCTTCATATTCTC
1 TTT-TTTTT-TTCAT-TTCTC
46937923 TTTTTTTTTTCATTTCT
1 TTTTTTTTTTCATTTCT
46937940 TTATTCTTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
16 3 0.09
17 5 0.15
18 7 0.21
19 6 0.18
20 7 0.21
21 5 0.15
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (18 bp):
TTTTTTTTTTCATTTCTC
Found at i:46944549 original size:29 final size:29
Alignment explanation
Indices: 46944517--46944623 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
46944507 ATACCCTCCG
** *
46944517 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
46944546 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
46944575 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
46944604 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
46944624 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:46945759 original size:20 final size:19
Alignment explanation
Indices: 46945717--46945770 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 19
46945707 AGAATGAACA
46945717 CTTTTTTTT-TTC-TTT-T
1 CTTTTTTTTCTTCATTTCT
46945733 C-TTTTTTTCTTCATATTCT
1 CTTTTTTTTCTTCAT-TTCT
*
46945752 CTTTTTTTTTTTCATTTCT
1 CTTTTTTTTCTTCATTTCT
46945771 TTATTCTTCC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 7 0.22
16 4 0.12
17 1 0.03
18 2 0.06
19 6 0.19
20 12 0.38
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (19 bp):
CTTTTTTTTCTTCATTTCT
Found at i:46946730 original size:48 final size:47
Alignment explanation
Indices: 46946659--46947122 Score: 410
Period size: 48 Copynumber: 9.7 Consensus size: 47
46946649 TATGTGTGCT
* * *
46946659 AGTGTAAGACCATGTTTGGGACATGGCTTTGGCTACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-TATGAGAGCC
* ** * * * *
46946707 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGACATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACATATGAGAGCC
* * * ** * * *
46946755 AGTGTAATACCATGTTTGGGACATGGCATCGGTGTTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACATATGAGAGCC
* *
46946803 AGTGTAAGACCAAGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-TATGAGAGCC
* * * * * **
46946851 AATGTAAGACCATGTCTAGGA-ATGGCATCGCCCATATTATGAGATTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-TATGAGAGCC
* *
46946898 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-TATGAGAGCC
* ** * * *
46946946 AGTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACATATGAGAGCC
* ** * * **
46946994 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGAGGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACATATGAGAGCC
* *
46947042 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTAC-ATATGAGAGCC
* *
46947090 AGTGTAAAACCATGTCTGGGATATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
46947123 AATTTACCCT
Statistics
Matches: 350, Mismatches: 60, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
47 43 0.12
48 303 0.87
49 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATATGAGAGCC
Found at i:46947104 original size:239 final size:240
Alignment explanation
Indices: 46946659--46947120 Score: 676
Period size: 239 Copynumber: 1.9 Consensus size: 240
46946649 TATGTGTGCT
* * * *
46946659 AGTGTAAGACCATGTTTGGGACATGGCTTTGGCTACATTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
* * * * **
46946724 GGGACATGGCATCGGTGTTGACATGTGTGCTAGTGTAATACCATGTTTGGGACATGGCATCGGTG
66 GGGACATGGCATCAGCGTTGACATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * *
46946789 TTGATATGTGTGCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAAT
131 TTGAGACGAGAGCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCCACATCATGAGAGCCAAT
*
46946854 GTAAGACCATGTCTAGGA-ATGGCATCGCCCATATTATGAGATTC
196 GTAAAACCATGTCTAGGATATGGCATCGCCCATATTATGAGATTC
*
46946898 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
* *
46946963 GGGACATGGCATCAGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
66 GGGACATGGCATCAGCGTTGACATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * *
46947028 TTGAGACGAGAGGTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CATGTGAGCCAG
131 TTGAGACGAGAGCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCCAC-ATCATGAGAGCCAA
*
46947092 TGTAAAACCATGTCTGGGATATGGCATCG
195 TGTAAAACCATGTCTAGGATATGGCATCG
46947121 GCAATTTACC
Statistics
Matches: 196, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
239 186 0.95
240 10 0.05
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (240 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCAGCGTTGACATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
TTGAGACGAGAGCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCCACATCATGAGAGCCAAT
GTAAAACCATGTCTAGGATATGGCATCGCCCATATTATGAGATTC
Found at i:46958567 original size:78 final size:82
Alignment explanation
Indices: 46958432--46958615 Score: 231
Period size: 78 Copynumber: 2.3 Consensus size: 82
46958422 TCGAATGATG
*
46958432 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCA-T
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
46958495 T-TGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * * **
46958510 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
46958572 TTTGTGCGAGTTACTATAA
64 TTTGTGCGAGTTACTATAA
*
46958591 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46958616 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 44 0.48
79 11 0.12
80 33 0.36
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:46958622 original size:40 final size:40
Alignment explanation
Indices: 46958432--46958615 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
46958422 TCGAATGATG
* * *
46958432 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
46958472 TCCGGACTAAGAT-CCGAAGGCA-TT-TGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46958510 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46958550 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46958591 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46958616 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
38 30 0.23
39 6 0.05
40 91 0.70
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46971035 original size:42 final size:42
Alignment explanation
Indices: 46970937--46971443 Score: 714
Period size: 42 Copynumber: 12.1 Consensus size: 42
46970927 AACGGGTACA
* * * * *
46970937 ATGCCGACGTCTCAGACGTGGTCTTACATGTAATTCAG-TATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAATCAGATA-CG
** * *
46970980 ATGCCTCTGTCCCAGACAGGGTCTTACAAGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * *
46971022 ATGCCGATGTCCCAGACATGGTCTTACACCAAAACAGATATG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* *
46971064 ATGCTGATGTCCCAGACAAGGTCTTACACGAAATC-GATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
46971105 ATGCCGACGTCCCAGACATGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
46971147 ATGCTGATGTCCCAGACATGGTCTTACAC-AAAGTCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAA-TCAGATACG
* * *
46971189 ATGCCAATGTCCCAGACATGGTCTTACACAAAATCAAATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
46971231 ATGCTGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
46971273 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACA
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * * *
46971315 ATGCCGATGTCCTATACATGGTCTTACACAAAATCAAATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
**
46971357 ATGCCGATGTCCCAGACATTATCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
46971399 ATGCCGATGTCCCAGGCATGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
46971441 ATG
1 ATG
46971444 TCAACGTTCC
Statistics
Matches: 412, Mismatches: 48, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
41 40 0.10
42 344 0.83
43 28 0.07
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
Found at i:46979043 original size:16 final size:16
Alignment explanation
Indices: 46979022--46979053 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
46979012 AAACTTTTGG
*
46979022 CTTTTCGGCATTTCGA
1 CTTTTCGACATTTCGA
46979038 CTTTTCGACATTTCGA
1 CTTTTCGACATTTCGA
46979054 GATTTGCCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.44
Consensus pattern (16 bp):
CTTTTCGACATTTCGA
Found at i:46983390 original size:28 final size:28
Alignment explanation
Indices: 46983353--46983446 Score: 109
Period size: 28 Copynumber: 3.3 Consensus size: 28
46983343 AAGTCTACAT
*
46983353 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
* * * *
46983381 TCTTTCATATGGTCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCC-AATC
*
46983410 ACATTCAAATGGCCC-CTTAGGCCCAATC
1 ACATTCATATGGCCCAC-TAGGCCCAATC
46983438 ACATTCATA
1 ACATTCATA
46983447 GTCATGCAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
28 31 0.58
29 22 0.42
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:46983963 original size:20 final size:21
Alignment explanation
Indices: 46983935--46983973 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
46983925 ACTAAACAAC
*
46983935 AAGTGACTCGTA-ATCATCTT
1 AAGTCACTCGTATATCATCTT
*
46983955 AAGTCACTCTTATATCATC
1 AAGTCACTCGTATATCATC
46983974 CATGGCCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (21 bp):
AAGTCACTCGTATATCATCTT
Found at i:46985537 original size:42 final size:42
Alignment explanation
Indices: 46985434--46985773 Score: 421
Period size: 42 Copynumber: 8.1 Consensus size: 42
46985424 AACGGGTACA
* * * * *
46985434 ATGCCGACGTCTCAGACGTGGTCTTACATGTAATTCAG-TATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAATCAGATA-CG
** * *
46985477 ATGCCTCTATCCCAGACATGGTCTTACACGAAATCAGATATG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * * *
46985519 ATGTCAATGTCCCAGACATGCTCTTACACGAAATCAGATAAG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * * *
46985561 ATGCCGATGTCCCAAACATGGTCTTATACAAAATTAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* *
46985603 ATGCCGATGTCCCAGACATGGTATTACACAAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * *
46985645 ATGCCGATGTCCTAGACATGGTCTTACACAAAATCAAATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
** *
46985687 ATGCCGATGTCCCAGACATTATCTTACACGAAATCAAATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
46985729 ATGCCGATGTCCCGGACATGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
46985771 ATG
1 ATG
46985774 TCAACGTTCT
Statistics
Matches: 258, Mismatches: 38, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
42 233 0.90
43 25 0.10
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
Found at i:46995240 original size:40 final size:40
Alignment explanation
Indices: 46995190--46995354 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
46995180 AAATTTAGCT
46995190 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
46995230 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
46995270 GGATATAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCC
1 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
46995309 GG-GATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GGTTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
46995349 GGTTAT
1 GGTTAT
46995355 CATCCGAATA
Statistics
Matches: 115, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.29
40 80 0.70
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:46995328 original size:79 final size:80
Alignment explanation
Indices: 46995193--46995350 Score: 257
Period size: 79 Copynumber: 2.0 Consensus size: 80
46995183 TTTAGCTGGT
* *
46995193 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTC
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
46995258 GGGACTTAGCCCGGA
66 GGGACTTAGCCCGGA
* *
46995273 TATAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCGGGAT-TAGTCACTAGCACAAATGCCTT
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GGATATAGTAACTAGCACAAATGCCTT
46995336 CGGGACTTAGCCCGG
65 CGGGACTTAGCCCGG
46995351 TTATCATCCG
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
79 43 0.59
80 30 0.41
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
GGGACTTAGCCCGGA
Found at i:47004861 original size:27 final size:28
Alignment explanation
Indices: 47004831--47004891 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
47004821 CTATTCAGTA
*
47004831 TCAGTA-TAGCCTGGGCCTAAGCCCTAT
1 TCAGTAGTAGCCTGGGCCTAAGCCCAAT
**
47004858 TCAGTAGTAGTGTGGGCCTAAGCCCAAT
1 TCAGTAGTAGCCTGGGCCTAAGCCCAAT
*
47004886 GCAGTA
1 TCAGTA
47004892 ACAATACAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (28 bp):
TCAGTAGTAGCCTGGGCCTAAGCCCAAT
Found at i:47005063 original size:26 final size:26
Alignment explanation
Indices: 47005015--47005064 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
47005005 ACCAATATCA
* * *
47005015 CAGCAAAGCTGTCAGTAATAATAATG
1 CAGCAAAGCTGCCAGAAACAATAATG
*
47005041 CAGCATAGCTGCCAGAAACAATAA
1 CAGCAAAGCTGCCAGAAACAATAA
47005065 ATGTGGCAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGAAACAATAATG
Found at i:47005123 original size:27 final size:26
Alignment explanation
Indices: 47005064--47005138 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
47005054 AGAAACAATA
* * *
47005064 AATGTGGCAAAGCCACCAGTATCTGT
1 AATGTGGCATAGCCACCAGTAACAGT
*
47005090 AATTGTGGCATAGCCACTAGTAACAGT
1 AA-TGTGGCATAGCCACCAGTAACAGT
* *
47005117 GAATGTGACATAGTCACCAGTA
1 -AATGTGGCATAGCCACCAGTA
47005139 CAGAACTTCC
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.05
27 36 0.90
28 2 0.05
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (26 bp):
AATGTGGCATAGCCACCAGTAACAGT
Found at i:47005309 original size:27 final size:26
Alignment explanation
Indices: 47005279--47005453 Score: 197
Period size: 27 Copynumber: 6.5 Consensus size: 26
47005269 GGGCATAATC
* * *
47005279 GTCATTTTACCATACAGAGGTATTACA
1 GTCATTTTACC-TACAGGGGCATTACG
*
47005306 GTCATTTTACCCTACAGGGGCATTATG
1 GTCATTTTA-CCTACAGGGGCATTACG
* *
47005333 GTCATTTTACTCTATAGGGGTATTACG
1 GTCATTTTAC-CTACAGGGGCATTACG
*
47005360 GTCATATTACTCTACAGGGGCATTACG
1 GTCATTTTAC-CTACAGGGGCATTACG
*
47005387 GTCATTTTACTCTACAGGGGCATTACC
1 GTCATTTTAC-CTACAGGGGCATTACG
* *
47005414 GTCATTTTACCCTAAAGGGGTATTACG
1 GTCATTTTA-CCTACAGGGGCATTACG
*
47005441 ATCATTTTACCTA
1 GTCATTTTACCTA
47005454 TTTTAGGGTT
Statistics
Matches: 129, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
26 5 0.04
27 121 0.94
28 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGCATTACG
Found at i:47005337 original size:54 final size:54
Alignment explanation
Indices: 47005279--47005450 Score: 229
Period size: 54 Copynumber: 3.2 Consensus size: 54
47005269 GGGCATAATC
* *
47005279 GTCATTTTAC-CATACAGAGGTATTACAGTCATTTTACCCTACAGGGGCATTATG
1 GTCATTTTACTC-TACAGGGGTATTACAGTCATTTTACCCTACAGGGGCATTACG
* * * *
47005333 GTCATTTTACTCTATAGGGGTATTACGGTCATATTACTCTACAGGGGCATTACG
1 GTCATTTTACTCTACAGGGGTATTACAGTCATTTTACCCTACAGGGGCATTACG
* * * *
47005387 GTCATTTTACTCTACAGGGGCATTACCGTCATTTTACCCTAAAGGGGTATTACG
1 GTCATTTTACTCTACAGGGGTATTACAGTCATTTTACCCTACAGGGGCATTACG
*
47005441 ATCATTTTAC
1 GTCATTTTAC
47005451 CTATTTTAGG
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
54 102 0.99
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GTCATTTTACTCTACAGGGGTATTACAGTCATTTTACCCTACAGGGGCATTACG
Found at i:47005418 original size:81 final size:81
Alignment explanation
Indices: 47005291--47005450 Score: 230
Period size: 81 Copynumber: 2.0 Consensus size: 81
47005281 CATTTTACCA
* ** * *
47005291 TACAGAGGTATTACAGTCATTTTACCCTACAGGGGCATTATGGTCATTTTACTCTATAGGGGTAT
1 TACAGAGGCATTACAGTCATTTTACCCTACAGGGGCATTACCGTCATTTTACCCTAAAGGGGTAT
*
47005356 TACGGTCATATTACTC
66 TACGATCATATTACTC
* * *
47005372 TACAGGGGCATTACGGTCATTTTACTCTACAGGGGCATTACCGTCATTTTACCCTAAAGGGGTAT
1 TACAGAGGCATTACAGTCATTTTACCCTACAGGGGCATTACCGTCATTTTACCCTAAAGGGGTAT
*
47005437 TACGATCATTTTAC
66 TACGATCATATTAC
47005451 CTATTTTAGG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (81 bp):
TACAGAGGCATTACAGTCATTTTACCCTACAGGGGCATTACCGTCATTTTACCCTAAAGGGGTAT
TACGATCATATTACTC
Found at i:47007011 original size:40 final size:40
Alignment explanation
Indices: 47006966--47007132 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
47006956 CGGAATATAA
47006966 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
47007006 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
47007046 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
47007086 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47007125 CCGGATAT
1 CCGGATAT
47007133 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:47007116 original size:80 final size:79
Alignment explanation
Indices: 47006982--47007132 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
47006972 ATAATCACGT
*
47006982 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
47007047 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
47007062 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
47007125 CCGGATAT
64 CCGGATAT
47007133 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:47007978 original size:17 final size:19
Alignment explanation
Indices: 47007955--47008000 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
47007945 AAGAAGCATG
47007955 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
47007973 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
47007991 AATCATGCTC
1 AATCATGCTC
47008001 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:47014223 original size:36 final size:35
Alignment explanation
Indices: 47014175--47014319 Score: 130
Period size: 41 Copynumber: 3.9 Consensus size: 35
47014165 ATATACGATT
47014175 TGCACAATGCCTTCGGGTCTTAGCCCGGATAAAAC
1 TGCACAATGCCTTCGGGTCTTAGCCCGGATAAAAC
**
47014210 TGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCTCAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGA--TA--AAAC
* *
47014250 TAGCACAATTGCCTTCGGGTCTTAACCCGGATAAATTTC
1 T-GCACAA-TGCCTTCGGGTCTTAGCCCGGATAAA--AC
* * *
47014289 AGCATAATTGTCTTCGGG-CTTAGCCCGGATA
1 TGCACAA-TGCCTTCGGGTCTTAGCCCGGATA
47014320 TCATTCAATT
Statistics
Matches: 91, Mismatches: 10, Indels: 16
0.78 0.09 0.14
Matches are distributed among these distances:
35 5 0.05
36 24 0.26
37 12 0.13
38 17 0.19
39 3 0.03
40 5 0.05
41 25 0.27
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (35 bp):
TGCACAATGCCTTCGGGTCTTAGCCCGGATAAAAC
Found at i:47019288 original size:40 final size:40
Alignment explanation
Indices: 47019233--47019442 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
47019223 AACATTGGAA
47019233 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
47019273 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
47019313 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
47019353 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
47019392 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
47019433 CTATATCCGG
1 ATATATCCGG
47019443 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:47027421 original size:40 final size:40
Alignment explanation
Indices: 47027366--47027575 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
47027356 AACATTGGAA
47027366 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
47027406 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
47027446 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
47027486 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
47027525 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
47027566 CTATATCCGG
1 ATATATCCGG
47027576 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:47029441 original size:24 final size:24
Alignment explanation
Indices: 47029411--47029571 Score: 112
Period size: 24 Copynumber: 6.6 Consensus size: 24
47029401 CAATCGATTT
47029411 CGCACACATAGTGCTATTCAAATC
1 CGCACACATAGTGCTATTCAAATC
* * * * *
47029435 CGTACACTTAGTGCCATGCTAA-C
1 CGCACACATAGTGCTATTCAAATC
**
47029458 CTGCACACATAGTGCCT-TAGAAATC
1 C-GCACACATAGTG-CTATTCAAATC
* * *
47029483 CACACACTCGTATTGAC-ATTCAAATC
1 CGCACA--CATAGTG-CTATTCAAATC
* * *
47029509 TGCACACATAATGCTATTCAATTC
1 CGCACACATAGTGCTATTCAAATC
*
47029533 CGCACACATAGTGCCATTCAAAATC
1 CGCACACATAGTGCTATTC-AAATC
*
47029558 CGCACACTTAGTGC
1 CGCACACATAGTGC
47029572 CAATGTCATT
Statistics
Matches: 102, Mismatches: 27, Indels: 15
0.71 0.19 0.10
Matches are distributed among these distances:
23 3 0.03
24 63 0.62
25 20 0.20
26 16 0.16
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (24 bp):
CGCACACATAGTGCTATTCAAATC
Found at i:47035745 original size:40 final size:40
Alignment explanation
Indices: 47035701--47035847 Score: 186
Period size: 40 Copynumber: 3.7 Consensus size: 40
47035691 ATATTGATGT
** * *
47035701 TAATCCAATTGAAACACGCCAAACAAAAGCTCATAAGAGC
1 TAATCCAACCGAAACACACCAAACAGAAGCTCATAAGAGC
*
47035741 TAATCCAACCGAAACACACCAAACAGAAGCTCATAATAGC
1 TAATCCAACCGAAACACACCAAACAGAAGCTCATAAGAGC
* * *
47035781 TGATCCAACCGAAACACATCAAATAGAAGCTCATAAGAGC
1 TAATCCAACCGAAACACACCAAACAGAAGCTCATAAGAGC
* * **
47035821 TGATCCAACCAAAACATGCCAAACAGA
1 TAATCCAACCGAAACACACCAAACAGA
47035848 GAGTATAACA
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.47, C:0.27, G:0.12, T:0.14
Consensus pattern (40 bp):
TAATCCAACCGAAACACACCAAACAGAAGCTCATAAGAGC
Found at i:47046797 original size:46 final size:46
Alignment explanation
Indices: 47046742--47046922 Score: 217
Period size: 46 Copynumber: 3.9 Consensus size: 46
47046732 TAGGATGGTA
47046742 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
47046788 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
47046834 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * * *
47046881 GAAC-GCCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAGCATCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47046923 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 12, Indels: 16
0.80 0.08 0.11
Matches are distributed among these distances:
43 4 0.03
45 4 0.03
46 68 0.59
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:47046903 original size:93 final size:93
Alignment explanation
Indices: 47046744--47046915 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
47046734 GGATGGTAGA
*
47046744 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
47046809 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
47046837 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
47046901 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
47046916 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:47051101 original size:49 final size:49
Alignment explanation
Indices: 47051035--47051481 Score: 788
Period size: 49 Copynumber: 9.1 Consensus size: 49
47051025 TTTACCACAT
* *
47051035 ATATATATACACTTTCACATTCATCACGTCGACCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
47051084 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
47051133 ATATATATAC-CTTTTCAAATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
47051182 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
47051231 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
47051280 ACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
47051329 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
47051378 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
47051427 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
47051476 ATATAT
1 ATATAT
47051482 TACTATGTAC
Statistics
Matches: 385, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
49 384 1.00
50 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:47056145 original size:40 final size:39
Alignment explanation
Indices: 47056086--47056292 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 39
47056076 TGAATGATAC
* * *
47056086 CCGGGCTAAGCCCCAAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
* *
47056126 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* *
47056165 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* * * * *
47056205 CTGGGGTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGT--TATAT
* * *
47056245 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
47056285 CC-GGCTAA
1 CCGGGCTAA
47056293 ATTCCGAAGA
Statistics
Matches: 138, Mismatches: 23, Indels: 13
0.79 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 41 0.30
40 93 0.67
41 2 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:47056217 original size:79 final size:80
Alignment explanation
Indices: 47056086--47056265 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 80
47056076 TGAATGATAC
* * * * *
47056086 CCGGGCTAAGCCCCAAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGGTAAGACCCGAAGGCATTTG
* * * *
47056151 TGCTAGTTGCTATA-
66 TGCAAGTTACCAAAT
* *
47056165 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCTGGGGTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGGTAAGACCCGAAGGCATTT
47056229 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
*
47056245 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
47056266 ATTGTGCTTG
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 65 0.75
80 22 0.25
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGGTAAGACCCGAAGGCATTTG
TGCAAGTTACCAAAT
Found at i:47064265 original size:40 final size:39
Alignment explanation
Indices: 47064210--47064415 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 39
47064200 TGAATGATAC
* * *
47064210 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
* * *
47064250 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
47064290 CC-GGCTAAGA-CCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * *
47064328 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
47064368 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
47064408 CC-GGCTAA
1 CCGGGCTAA
47064416 ATTCCGAAGA
Statistics
Matches: 138, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
38 28 0.20
39 21 0.15
40 86 0.62
41 2 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:47064351 original size:78 final size:79
Alignment explanation
Indices: 47064213--47064360 Score: 219
Period size: 78 Copynumber: 1.9 Consensus size: 79
47064203 ATGATACCCG
* * * *
47064213 GGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCATTTGTGC
1 GGCTAAGCACCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
*
47064278 GAGTTGCTATAGCC
66 AAGTTGCTATAGCC
*
47064292 GGCTAAG-ACCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTG
1 GGCTAAGCACCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTG
47064355 CAAGTT
65 CAAGTT
47064361 ACCAAATCCG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
78 53 0.85
79 9 0.15
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
GGCTAAGCACCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
AAGTTGCTATAGCC
Found at i:47068067 original size:48 final size:48
Alignment explanation
Indices: 47067960--47068279 Score: 231
Period size: 48 Copynumber: 6.7 Consensus size: 48
47067950 TATGTGTGCT
* * * ** *
47067960 AGTGTAAGACTATGTCTGGGACATGGCATCGG-TA-TTGGTATGTGTTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAT--TATGAGAGCC
* *
47068008 ACTGTAAGACCATGTTTGGGACATGGCATCGGCTACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGCC
* *** ** * *
47068056 AGTGTAGGACCATGTCTAAAACATGGCATCGGCATTGA-TATGTA-TGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACATTATG-AGAGCC
* ** * *
47068104 AGTGTAAGACCATGTCTGGAACATGGCATTAGCCACATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGCC
* * * * ** * *
47068152 AGTGTAAGACCATATCTGGGGCATGGCATTGGTGTTGA-TATGTA-TGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACATTATG-AGAGCC
* * *
47068200 AGTGTAAGACCATGTCTAGGACATGGCATC-ACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGCC
* *
47068247 AATGTAAGACCATGCCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
47068280 AATTTACCAT
Statistics
Matches: 206, Mismatches: 55, Indels: 22
0.73 0.19 0.08
Matches are distributed among these distances:
46 2 0.01
47 35 0.17
48 161 0.78
49 7 0.03
50 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACATTATGAGAGCC
Found at i:47068128 original size:96 final size:94
Alignment explanation
Indices: 47067960--47068280 Score: 399
Period size: 96 Copynumber: 3.4 Consensus size: 94
47067950 TATGTGTGCT
* * * * * * *
47067960 AGTGTAAGACTATGTCTGGGACATGGCATCGGTATTGGTATGTGTTCTACTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
*
47068025 GGGACATGGCATCGGCTACATTATGAGAGCC
66 -GGACATGGCATC-GCCACATTATGAGAGCC
* ***
47068056 AGTGTAGGACCATGTCTAAAACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
* *
47068121 GGAACATGGCATTAGCCACATTATGAGAGTC
66 GG-ACATGGCA-TCGCCACATTATGAGAGCC
* * * **
47068152 AGTGTAAGACCATATCTGGGGCATGGCATTGGTGTTGATATGTATGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
*
47068217 AGGACATGGCATCACCACATTATGAGAGCC
66 -GGACATGGCATCGCCACATTATGAGAGCC
* *
47068247 AATGTAAGACCATGCCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
47068281 ATTTACCATC
Statistics
Matches: 189, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
95 45 0.24
96 141 0.75
97 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTATGCTAGTGTAAGACCATGTCT
GGACATGGCATCGCCACATTATGAGAGCC
Found at i:47071106 original size:29 final size:29
Alignment explanation
Indices: 47071074--47071143 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
47071064 AGAGTAATTN
* * *
47071074 ACTAAGTGTGCGAGTTTGGA-CTATATGGC
1 ACTAAGTGTGCGAGCTTGAATC-ACATGGC
* *
47071103 ACTATGTGTGCGGGCTTGAATCACATGGC
1 ACTAAGTGTGCGAGCTTGAATCACATGGC
47071132 ACTAAGTGTGCG
1 ACTAAGTGTGCG
47071144 TGATTGAGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 33 0.97
30 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (29 bp):
ACTAAGTGTGCGAGCTTGAATCACATGGC
Found at i:47078870 original size:29 final size:28
Alignment explanation
Indices: 47078838--47078940 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
47078828 GTGACGAGAT
* *
47078838 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
47078867 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
47078896 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
47078925 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
47078941 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:47088024 original size:29 final size:29
Alignment explanation
Indices: 47087990--47088121 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
47087980 TACTCGATTT
** * *
47087990 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
47088019 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
47088048 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
47088077 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
47088106 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
47088122 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:47096052 original size:164 final size:164
Alignment explanation
Indices: 47095774--47096086 Score: 563
Period size: 164 Copynumber: 1.9 Consensus size: 164
47095764 ATCGACTTCC
**
47095774 CTTGAGTAATTCCTTGCCTCTTACTCTGCATCTCCCTTCCTAAGTGCCTCCTCCGGTGTTTAAAT
1 CTTGAGTAATTCCTTGCCTCTTACTCTGCATCTCCCTTCCTAAGTGCCTCCTCAAGTGTTTAAAT
47095839 AGGCTTTAGAATGCCTAAGAGCCCTTAAAATTGGCCTTTTTCAAATAGGGCTATACTTGGGCTCG
66 AGGCTTTAGAATGCCTAAGAGCCCTTAAAATTGGCCTTTTTCAAATAGGGCTATACTTGGGCTCG
*
47095904 GTAGGGACATGCCCGTGTGACACACCCCTGTGCA
131 GTAGGGACACGCCCGTGTGACACACCCCTGTGCA
* *
47095938 CTTGAGTAATTCCTTGCCTCTTACTCTGCGTCTCCCTTCGTAAGTGCCTCCTCAAGTGTTTAAAT
1 CTTGAGTAATTCCTTGCCTCTTACTCTGCATCTCCCTTCCTAAGTGCCTCCTCAAGTGTTTAAAT
*
47096003 AGGCTTTAGAATGCCTAAGAGCCCTTAAAATTGGCCTTTTTCGAATAGGGCTATACTTGGGCTCG
66 AGGCTTTAGAATGCCTAAGAGCCCTTAAAATTGGCCTTTTTCAAATAGGGCTATACTTGGGCTCG
*
47096068 GTAGGGACACGTCCGTGTG
131 GTAGGGACACGCCCGTGTG
47096087 TCACCGTGTG
Statistics
Matches: 142, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
164 142 1.00
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (164 bp):
CTTGAGTAATTCCTTGCCTCTTACTCTGCATCTCCCTTCCTAAGTGCCTCCTCAAGTGTTTAAAT
AGGCTTTAGAATGCCTAAGAGCCCTTAAAATTGGCCTTTTTCAAATAGGGCTATACTTGGGCTCG
GTAGGGACACGCCCGTGTGACACACCCCTGTGCA
Found at i:47097986 original size:49 final size:49
Alignment explanation
Indices: 47097824--47098048 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
47097814 TGAGGTCGCA
* * * * *
47097824 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * * * * **
47097875 TGTGTAGTAATAAGTGCAGGATACTAGGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
47097925 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
47097974 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
47098023 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
47098049 TGCGCACCAG
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
49 80 0.52
50 42 0.27
51 31 0.20
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:47102990 original size:18 final size:18
Alignment explanation
Indices: 47102967--47103002 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
47102957 TTGGGTAACC
47102967 AAGGAATTGTATGTATAT
1 AAGGAATTGTATGTATAT
47102985 AAGGAATTGTATGTATAT
1 AAGGAATTGTATGTATAT
47103003 CATTTTAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (18 bp):
AAGGAATTGTATGTATAT
Done.