Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 171 of 345
Found at i:48133671 original size:46 final size:46
Alignment explanation
Indices: 48133621--48133793 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
48133611 TGGTTAAGCA
*
48133621 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
48133667 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
48133714 TCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
48133760 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48133794 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:48133777 original size:93 final size:93
Alignment explanation
Indices: 48133618--48133788 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
48133608 GGATGGTTAA
* ***
48133618 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
48133683 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
48133711 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
48133776 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
48133789 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48136782 original size:15 final size:15
Alignment explanation
Indices: 48136734--48136813 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
48136724 GTATCTTGGG
*
48136734 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
48136749 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
48136764 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
48136779 TTTCTCTA-TCTTGCA
1 TTTCTTTATTC-TGGA
*
48136794 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
48136808 TTTCTT
1 TTTCTT
48136814 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.17
15 42 0.79
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:48139244 original size:46 final size:46
Alignment explanation
Indices: 48139194--48139366 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
48139184 TGGTTGAGCA
*
48139194 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
48139240 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
48139287 TCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
48139333 -CTTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48139367 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:48139350 original size:93 final size:93
Alignment explanation
Indices: 48139191--48139361 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
48139181 GGATGGTTGA
* *
48139191 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
48139256 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
48139284 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCGAACG-CTTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
48139348 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
48139362 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48141800 original size:17 final size:19
Alignment explanation
Indices: 48141758--48141801 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
48141748 ATGAAATTTT
*
48141758 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
48141777 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
48141795 AA-TATTA
1 AATTATTA
48141802 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:48141850 original size:15 final size:15
Alignment explanation
Indices: 48141832--48141862 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
48141822 TTTTTATGAA
48141832 AATTATTATTATTAT
1 AATTATTATTATTAT
48141847 AATTATTATTATTAT
1 AATTATTATTATTAT
48141862 A
1 A
48141863 TAGGAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:48144104 original size:25 final size:25
Alignment explanation
Indices: 48144075--48144122 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
48144065 TTATAATATG
* * *
48144075 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
48144100 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
48144123 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:48144189 original size:11 final size:11
Alignment explanation
Indices: 48144153--48144208 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
48144143 CATGGTATGT
48144153 ATGATATGCAC
1 ATGATATGCAC
* *
48144164 ATGACATG--T
1 ATGATATGCAC
48144173 ATGATATGCAC
1 ATGATATGCAC
*
48144184 ATGATATG--T
1 ATGATATGCAC
48144193 ATGATATGCAC
1 ATGATATGCAC
48144204 ATGAT
1 ATGAT
48144209 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:48144208 original size:20 final size:20
Alignment explanation
Indices: 48144142--48144208 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
48144132 TGAATGTAAT
*
48144142 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
48144162 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
48144182 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
48144202 ACATGAT
1 ACATGAT
48144209 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:48144284 original size:24 final size:24
Alignment explanation
Indices: 48144257--48144412 Score: 231
Period size: 24 Copynumber: 6.4 Consensus size: 24
48144247 GGAGGAAGTG
*
48144257 TAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
48144281 TAAAAGGGCTTATGCCCTAGTTGT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
48144305 TAAAAGGGCTTCTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
48144329 TAAATGGGCTTATGCCCCAGTTTT
1 TAAAAGGGCTTATGCCCCAGTTAT
48144353 TAAAAAGGGCTTATGCCCCAGTTAT
1 T-AAAAGGGCTTATGCCCCAGTTAT
*
48144378 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
48144402 TAAAAGAGGCT
1 TAAAAG-GGCT
48144413 AGGCCTCCAA
Statistics
Matches: 120, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
24 94 0.78
25 26 0.22
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:48144378 original size:49 final size:49
Alignment explanation
Indices: 48144258--48144406 Score: 228
Period size: 49 Copynumber: 3.1 Consensus size: 49
48144248 GAGGAAGTGT
* * *
48144258 AAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCTAGTTGTT-
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
* * *
48144306 AAAAGGGCTTCTGCCCCAGTTATTAAATGGGCTTATGCCCCAGTTTTTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
*
48144355 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
48144404 AAA
1 AAA
48144407 GAGGCTAGGC
Statistics
Matches: 91, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
48 43 0.47
49 48 0.53
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
Found at i:48146441 original size:15 final size:15
Alignment explanation
Indices: 48146416--48146457 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
48146406 AGTATGTTTG
48146416 AAATT-TTTTTATGA
1 AAATTATTTTTATGA
*
48146430 AAATTATTTTTATTA
1 AAATTATTTTTATGA
* *
48146445 TAATTATTATTAT
1 AAATTATTTTTAT
48146458 TATATAGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
AAATTATTTTTATGA
Found at i:48146458 original size:15 final size:15
Alignment explanation
Indices: 48146431--48146461 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48146421 TTTTTATGAA
*
48146431 AATTATTTTTATTAT
1 AATTATTATTATTAT
48146446 AATTATTATTATTAT
1 AATTATTATTATTAT
48146461 A
1 A
48146462 TAGGAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:48149769 original size:40 final size:40
Alignment explanation
Indices: 48149724--48149891 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
48149714 CGGAATATAA
48149724 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48149764 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48149804 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48149844 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
48149884 CCGGATAT
1 CCGGATAT
48149892 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48149874 original size:80 final size:80
Alignment explanation
Indices: 48149740--48149889 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
48149730 ATAATCACGT
*
48149740 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
48149804 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
48149820 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
48149883 CCCGGAT
64 CCCGGAT
48149890 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:48157770 original size:40 final size:40
Alignment explanation
Indices: 48157725--48157892 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
48157715 CGGAATATAA
48157725 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48157765 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48157805 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48157845 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
48157885 CCGGATAT
1 CCGGATAT
48157893 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48157875 original size:80 final size:80
Alignment explanation
Indices: 48157741--48157890 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
48157731 ATAATCACGT
*
48157741 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
48157805 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
48157821 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
48157884 CCCGGAT
64 CCCGGAT
48157891 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:48160021 original size:20 final size:20
Alignment explanation
Indices: 48159955--48160021 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
48159945 ATTTTGATAA
*
48159955 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
48159975 ACCTGACATGTATGATATGC
1 ACATGATATGTATGATATGC
48159995 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
48160015 ACATGAT
1 ACATGAT
48160022 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:48160118 original size:24 final size:24
Alignment explanation
Indices: 48160071--48160213 Score: 227
Period size: 24 Copynumber: 6.0 Consensus size: 24
48160061 GAGGAAGTGC
48160071 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
48160094 AAAAGGGCTTATGCCACAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
48160118 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
48160142 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
48160166 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
48160190 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
48160214 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
23 13 0.12
24 88 0.79
25 11 0.10
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:48163399 original size:40 final size:40
Alignment explanation
Indices: 48163302--48163454 Score: 125
Period size: 40 Copynumber: 3.8 Consensus size: 40
48163292 TCGAATGATG
* *
48163302 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* * **
48163342 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* * **
48163382 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
48163423 T-CGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
48163455 CGCTATATCC
Statistics
Matches: 90, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
39 2 0.02
40 76 0.84
41 12 0.13
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:48167895 original size:40 final size:39
Alignment explanation
Indices: 48167730--48167913 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
48167720 AAATTGAATG
* * *
48167730 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
48167770 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
48167810 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
48167850 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
48167889 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
48167914 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:48167938 original size:80 final size:81
Alignment explanation
Indices: 48167770--48167958 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
48167760 GCTGGAAATT
* * * *
48167770 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
48167835 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
48167851 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
48167914 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
48167930 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
48167959 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:48175978 original size:37 final size:37
Alignment explanation
Indices: 48175887--48175995 Score: 132
Period size: 37 Copynumber: 2.9 Consensus size: 37
48175877 ATGCTGGAAA
* *
48175887 TTTA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTTATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-G
*
48175925 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-
1 -TTTATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTG
48175963 TTTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TTTATCCGGGCTAAGACCCGAAGGCA-TTGTGC
48175996 AAATCGTGAT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
37 29 0.46
38 2 0.03
39 6 0.10
40 26 0.41
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (37 bp):
TTTATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTG
Found at i:48176008 original size:77 final size:76
Alignment explanation
Indices: 48175847--48176036 Score: 186
Period size: 77 Copynumber: 2.4 Consensus size: 76
48175837 AGAAATTGAA
* * * *
48175847 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTTACCGGGTTAAGACCCGAAGGCA
1 TGATATCCGGGCTAAGACCCGAAGGC-ATTGTGC--GAAATTTACCGGGCTAAGACCCGAAGGCA
* * *
48175912 ATTGTGCTAGTGGC
63 ATTGTGCAAATCGC
** *
48175926 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTTTATCCGGGCTAAGACCCGAAGGCAT
1 TGATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAAATTTA-CCGGGCTAAGACCCGAAGGCAA
48175990 TTGTGCAAATCG-
64 TTGTGCAAATCGC
* * * *
48176002 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCG
1 TGATATCCGGGCTAAGACCCGAAGGCATT-GTGCG
48176037 GTTACCATAA
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
76 7 0.08
77 60 0.65
78 25 0.27
79 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (76 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTGTGCGAAATTTACCGGGCTAAGACCCGAAGGCAATT
GTGCAAATCGC
Found at i:48189153 original size:23 final size:25
Alignment explanation
Indices: 48189123--48189168 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
48189113 GTTAGGTGGC
48189123 TAGGTTTTT-TTATCTT-TTTTTGT
1 TAGGTTTTTCTTATCTTCTTTTTGT
*
48189146 TAGGTTTTTCTTTTCTTCTTTTT
1 TAGGTTTTTCTTATCTTCTTTTT
48189169 TTTTTTGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 6 0.30
25 5 0.25
ACGTcount: A:0.07, C:0.09, G:0.11, T:0.74
Consensus pattern (25 bp):
TAGGTTTTTCTTATCTTCTTTTTGT
Found at i:48189186 original size:18 final size:18
Alignment explanation
Indices: 48189165--48189243 Score: 54
Period size: 18 Copynumber: 4.4 Consensus size: 18
48189155 CTTTTCTTCT
48189165 TTTTTTTTTTGGGTTAGG
1 TTTTTTTTTTGGGTTAGG
** * **
48189183 TTTTTTTGGTAGGTT-TT
1 TTTTTTTTTTGGGTTAGG
*** *
48189200 TCTTTTTTTTTTTCTTTG-
1 T-TTTTTTTTTGGGTTAGG
48189218 TTTTTTTTTTGGGTTAGG
1 TTTTTTTTTTGGGTTAGG
48189236 TTTTTTTT
1 TTTTTTTT
48189244 GGGGGCTTAA
Statistics
Matches: 43, Mismatches: 15, Indels: 6
0.67 0.23 0.09
Matches are distributed among these distances:
17 13 0.30
18 30 0.70
ACGTcount: A:0.04, C:0.03, G:0.19, T:0.75
Consensus pattern (18 bp):
TTTTTTTTTTGGGTTAGG
Found at i:48189211 original size:12 final size:13
Alignment explanation
Indices: 48189196--48189225 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
48189186 TTTTGGTAGG
48189196 TTTTTCTTT-TTT
1 TTTTTCTTTGTTT
48189208 TTTTTCTTTGTTT
1 TTTTTCTTTGTTT
48189221 TTTTT
1 TTTTT
48189226 TTGGGTTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (13 bp):
TTTTTCTTTGTTT
Found at i:48189977 original size:88 final size:83
Alignment explanation
Indices: 48189870--48190446 Score: 292
Period size: 88 Copynumber: 7.0 Consensus size: 83
48189860 AACAGACATT
** * *
48189870 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
48189935 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
48189958 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
48190022 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
48190041 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
48190102 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
48190124 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
48190189 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * * *
48190212 AAAAATAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
48190277 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** * *
48190295 --ATA-A-A--TTGAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATG
1 AAAAACAGATTTTG-AAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATG
48190353 AGTTGATTTTTTTG--AAA--G
63 AGTTGA-TTTTTTGAAAAACTG
* * * * * * *
48190371 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
48190432 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
48190447 CAGAAATTGA
Statistics
Matches: 387, Mismatches: 64, Indels: 86
0.72 0.12 0.16
Matches are distributed among these distances:
76 12 0.03
77 47 0.12
78 60 0.16
79 9 0.02
80 1 0.00
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 114 0.29
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:48190074 original size:30 final size:30
Alignment explanation
Indices: 48190038--48190099 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
48190028 TTTTGAAAAA
48190038 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
48190068 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
48190098 CA
1 CA
48190100 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:48190536 original size:72 final size:73
Alignment explanation
Indices: 48190247--48190774 Score: 441
Period size: 72 Copynumber: 6.8 Consensus size: 73
48190237 ACATGTAACC
* * * *
48190247 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAATACC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG-AAAATACC
* *
48190312 TCAGTGTGTGAT
63 TCAGCGTGT-CT
* * *
48190324 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
48190389 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
48190402 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
48190467 ACGTGTCT
66 GCGTGTCT
* ** * *
48190475 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
48190539 GCGTGTCC
66 GCGTGTCT
*
48190547 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAAT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAA-ACAGAAATTG----A-
** ** *
48190612 GGAAATTGAAAATACCTCGACGTGTGAT
56 --AAA-T--ACCT-CAGC---GTGT-CT
* * *
48190640 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
48190705 CAGCGTGTC-
64 CAGCGTGTCT
* *
48190714 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
48190775 ACGGAAATTG
Statistics
Matches: 368, Mismatches: 54, Indels: 60
0.76 0.11 0.12
Matches are distributed among these distances:
72 66 0.18
73 30 0.08
74 43 0.12
75 32 0.09
76 14 0.04
77 53 0.14
78 57 0.15
79 4 0.01
80 2 0.01
82 2 0.01
83 2 0.01
85 2 0.01
86 2 0.01
88 2 0.01
89 2 0.01
90 9 0.02
91 9 0.02
92 4 0.01
93 1 0.00
94 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:48190736 original size:74 final size:75
Alignment explanation
Indices: 48190613--48190774 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
48190603 TTGAAAAATG
*
48190613 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
48190678 TTTTGACAACA
65 TTTTGACAACA
* * *
48190689 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
48190752 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
48190764 AAAATTGAAAA
1 GAAATTGAAAA
48190775 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:48190829 original size:165 final size:165
Alignment explanation
Indices: 48190443--48191101 Score: 933
Period size: 165 Copynumber: 4.0 Consensus size: 165
48190433 TGATTTTTTG
* * * ** *
48190443 AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
*
48190506 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATATTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
48190570 ATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGA
131 ATATGAGTTGA--TTTTTTTTGAAAGGCAGAAATTGA
* *
48190607 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* *
48190672 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TATTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
*
48190737 AATATGAGTTGA-TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
* * *
48190772 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* *
48190837 TGATTTTTTTGACAACAGAAATTGAAATTA-CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TATTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
*
48190901 AATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGA
130 AATATGAGTTGA-TTTTTTTTGAAAGGCAGAAATTGA
* *
48190938 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* *** * * * *
48191003 TGAAATTAAAACATA-A-AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGT
66 TGATATTTTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
48191066 AATATGAGTTGA-TTTTTTTGACAA--CAGAAATTGA
130 AATATGAGTTGATTTTTTTTGA-AAGGCAGAAATTGA
48191100 AA
1 AA
48191102 TTACCTCAGC
Statistics
Matches: 455, Mismatches: 31, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
162 12 0.03
163 9 0.02
164 86 0.19
165 159 0.35
166 120 0.26
168 69 0.15
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (165 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATATTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
Found at i:48190900 original size:73 final size:77
Alignment explanation
Indices: 48190768--48190940 Score: 228
Period size: 73 Copynumber: 2.3 Consensus size: 77
48190758 AAGGCAAAAA
* * * *
48190768 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATAC
48190833 GAGTTGA-TTTTT
65 GAGTTGATTTTTT
* * * *
48190845 TTGACA-ACAGAAATTGAAATTA-CTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACG
48190907 AGTTGATTTTTTT
66 AGTTGA-TTTTTT
48190920 TTGAAAGACAGAAATTGAAAA
1 TTGAAAGACAGAAATTGAAAA
48190941 ACGGAAATTG
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
73 33 0.39
75 19 0.23
76 27 0.32
77 5 0.06
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACG
AGTTGATTTTTT
Found at i:48190934 original size:331 final size:327
Alignment explanation
Indices: 48190443--48191367 Score: 1078
Period size: 331 Copynumber: 2.9 Consensus size: 327
48190433 TGATTTTTTG
* *** *
48190443 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTG
48190508 AATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
66 AATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
* *
48190573 TGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAATGGAAATTGAAAATACCTCGACGTGTG
131 TGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGACGTGTG
* ** *** *
48190638 ATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACA-ACAGAAATTGAAATTA
196 ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-AATTAAAACATA-A-AAATTGAAAATA
* * *
48190702 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAA
258 CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTGAAAGGCAAAA
48190767 ATTGA
323 ATTGA
* ** *
48190772 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAACGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGT
* * *
48190837 TGATTTTTTTGACAACAGAAATTGAAATTA-CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
64 TGA--ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
*
48190901 AATATGAGTTGA-TTTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCG
127 AATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGACG
*
48190965 TGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGAAATTAAAACATAAAAATTGAAAAT
192 TGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGAAATTAAAACATAAAAATTGAAAAT
*
48191030 ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGTAATATGAGTTGATTTTTTTG--A--C---
257 ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTGAAAGGCAAA
48191088 ------
322 AATTGA
* * * * *
48191088 --AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTG
* ** *
48191151 -ATTTTGAAAA-AG---TAGAAATTA--AAAG-GT-T--C-A-----ACCT-ACCTCTCGCAATA
66 AATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
* * *
48191198 TGAGTTGA-----TTCTTGAACA-AC-GTAAATTG-AAAACAGAAATTGAAAATACCTC-A-GCG
131 TGAGTTGATTTTTTTTTTGAA-AGACAG-AAATTGAAAAACGGAAATTGAAAATACCTCGACGTG
* *
48191253 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATAC
194 TGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGAAATTAAAACATAAAAATTGAAAATAC
48191318 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
259 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
48191368 GAAAAACAAA
Statistics
Matches: 540, Mismatches: 49, Indels: 57
0.84 0.08 0.09
Matches are distributed among these distances:
286 113 0.21
288 23 0.04
289 15 0.03
290 1 0.00
293 21 0.04
294 3 0.01
299 1 0.00
302 1 0.00
303 2 0.00
304 2 0.00
305 8 0.01
308 2 0.00
309 8 0.01
312 31 0.06
314 25 0.05
325 1 0.00
327 1 0.00
329 89 0.16
330 6 0.01
331 119 0.22
332 45 0.08
333 23 0.04
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (327 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTG
AATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGACGTGTG
ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGAAATTAAAACATAAAAATTGAAAATACCT
CAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATT
GA
Found at i:48190939 original size:14 final size:14
Alignment explanation
Indices: 48190920--48190954 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
48190910 TGATTTTTTT
*
48190920 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
48190934 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
48190948 TTGAAAA
1 TTGAAAA
48190955 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:48191377 original size:72 final size:72
Alignment explanation
Indices: 48190930--48191385 Score: 319
Period size: 72 Copynumber: 6.3 Consensus size: 72
48190920 TTGAAAGACA
* * * * * *
48190930 GAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCA
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTAGCA
*
48190995 ATACGAGTT
64 ATATGAGTT
* * *
48191004 GAAATT-AAAACATAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGTAA
1 GAAATTGAAAA-ACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
48191068 TATGAGTT
65 TATGAGTT
** * * * *
48191076 GATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCA-
1 GA---AATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT-AG
48191139 CAATATGAGTT
62 CAATATGAGTT
** * *** * * * *** * ** * * *
48191150 GATTTTGAAAAAGTAGAAATT-AAAA-GGTTCAACCTACCTCTCGCAATATGAGTTGA-TTCTTG
1 GAAATTGAAAAA-CAGAAATTGAAAATACCTCAGCGTGCC-C-CG-AGGCTCAACTCACCTCTAG
*
48191212 -AACA--ACG-T
62 CAATATGA-GTT
* * *
48191220 -AAATTG-AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
48191283 ATGAGTT
66 ATGAGTT
*
48191290 GAAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
1 GAAATTGAAAA-ACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
48191354 TATGAGTT
65 TATGAGTT
** *
48191362 GATTTTGAAAAACAAAAATT-AAAA
1 GAAATTGAAAAACAGAAATTGAAAA
48191386 GGCTTAACTC
Statistics
Matches: 291, Mismatches: 67, Indels: 51
0.71 0.16 0.12
Matches are distributed among these distances:
66 5 0.02
67 12 0.04
68 12 0.04
69 11 0.04
70 4 0.01
71 24 0.08
72 114 0.39
73 19 0.07
74 85 0.29
75 5 0.02
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (72 bp):
GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTT
Found at i:48191480 original size:120 final size:123
Alignment explanation
Indices: 48191260--48191630 Score: 365
Period size: 120 Copynumber: 2.9 Consensus size: 123
48191250 GCGTGACCTG
*
48191260 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
48191325 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAAC-AAAATTAAA
* * * * *
48191385 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACT-AAAATACCTCAGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
* *
48191446 TG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAATT-AAA
** * * * * * * * *
48191504 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAAT
1 A-GGCTCAAC---TC---A-CCTC-TCGCA-ATAT-G-AGT-TGA---AATTAAAACACAAAAAC
*
48191569 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTAGCAATATGAGTTGATTTTGAA
50 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAA
48191631 CAACGTAAAT
Statistics
Matches: 200, Mismatches: 24, Indels: 29
0.79 0.09 0.11
Matches are distributed among these distances:
118 6 0.03
119 9 0.05
120 44 0.22
121 15 0.08
122 7 0.04
123 9 0.05
124 1 0.00
125 27 0.14
126 1 0.00
127 3 0.01
128 3 0.01
129 2 0.01
130 1 0.00
131 1 0.00
133 1 0.00
137 6 0.03
138 7 0.04
139 15 0.08
140 42 0.21
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (123 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAATTAAA
Found at i:48191540 original size:70 final size:71
Alignment explanation
Indices: 48191385--48191646 Score: 295
Period size: 70 Copynumber: 3.8 Consensus size: 71
48191375 AAAAATTAAA
* * * * * *
48191385 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACT-AAAATACCTCAGTGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAAATACCTCAGCGT
48191447 G-CCCG
66 GTCCCG
* * *
48191452 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAC-AAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAAATACCTCAGCGT
**
48191516 GTCTTG
66 GTCCCG
* *
48191522 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTGAAAATACCTCAGCG
*
48191585 TGCCCCG
65 TGTCCCG
* * **
48191592 AGGCTCAACTCACTTCTAGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAA-AACAAAAATTGAAAA
48191647 CAGAAATTGA
Statistics
Matches: 162, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
67 26 0.16
68 14 0.09
69 21 0.13
70 84 0.52
72 16 0.10
73 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAAATACCTCAGCGT
GTCCCG
Found at i:48191726 original size:85 final size:85
Alignment explanation
Indices: 48191565--48191731 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 85
48191555 TAAAACACAA
* * * **
48191565 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTAGCAATATGAGTTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAATTAAA
**
48191630 ACAACGTAAATTGAAAACAG
66 ACAACAAAAATTGAAAACAG
* *
48191650 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTG-AATTAA
48191715 AAC-ACAAAAATTGAAAA
65 AACAACAAAAATTGAAAA
48191732 TACCTCAGCG
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 66 0.92
86 6 0.08
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (85 bp):
AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAATTAAA
ACAACAAAAATTGAAAACAG
Found at i:48191763 original size:71 final size:71
Alignment explanation
Indices: 48191637--48191801 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
48191627 TGAACAACGT
* * * *
48191637 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
48191702 GAGTTG
66 GAGTTG
48191708 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
48191772 TGAGTTG
65 TGAGTTG
**
48191779 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
48191802 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
70 4 0.05
71 53 0.62
72 29 0.34
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:48191897 original size:121 final size:123
Alignment explanation
Indices: 48191677--48192061 Score: 384
Period size: 139 Copynumber: 3.0 Consensus size: 123
48191667 GCGTGACCTG
*
48191677 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
48191742 TGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
48191801 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACT-AAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
* * *
48191862 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAA-AAAA
66 TG-CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
** * * * * * * * *
48191920 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAAT
1 A-GGCTCAAC---TC---A-CCTC-TCGCA-ATAT-G-AGT-TGA---AATTAAAACACAAAAAC
48191985 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA
50 TGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAA
*
48192050 CAACAATTAAA
113 CAAAAATTAAA
48192061 A
1 A
48192062 ATACCTCAAC
Statistics
Matches: 212, Mismatches: 26, Indels: 29
0.79 0.10 0.11
Matches are distributed among these distances:
119 4 0.02
120 31 0.15
121 46 0.22
122 7 0.03
123 3 0.01
124 27 0.13
126 1 0.00
127 3 0.01
128 3 0.01
129 2 0.01
130 1 0.00
131 1 0.00
133 1 0.00
137 6 0.03
138 7 0.03
139 56 0.26
140 9 0.04
141 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.24
Consensus pattern (123 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTGAAAATACCTCAGCG
TGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:48191981 original size:416 final size:417
Alignment explanation
Indices: 48191185--48192046 Score: 1656
Period size: 416 Copynumber: 2.1 Consensus size: 417
48191175 GGTTCAACCT
*
48191185 ACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
1 ACCTCTAGCAATATGAGTTGATT-TTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
48191250 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAA
65 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAA
48191315 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
130 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
*
48191380 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAATACCTCAGT
195 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAATACCTCAGC
*
48191445 GTGCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAAATACCT
260 GTGCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAATAAAAAATACCT
48191510 CAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAA
325 CAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAA
48191575 TACCTCAGCGTGCCCCGAGGCTCAACTC
390 TACCTCAGCGTGCCCCGAGGCTCAACTC
*
48191603 ACTTCTAGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAG
1 ACCTCTAGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAG
48191668 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAAT
66 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAAT
48191733 ACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
131 ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
48191797 TAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAATACCTCAGCG
196 TAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAATACCTCAGCG
48191862 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAA-AAAAAATACCT
261 TG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAATAAAAAATACCT
48191926 CAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAA
325 CAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAA
48191991 TACCTCAGCGTGCCCCGAGGCTCAACTC
390 TACCTCAGCGTGCCCCGAGGCTCAACTC
48192019 ACCTCTAGCAATATGAGTTGATTTTGAA
1 ACCTCTAGCAATATGAGTTGATTTTGAA
48192047 AAACAACAAT
Statistics
Matches: 438, Mismatches: 5, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
416 249 0.57
417 168 0.38
418 21 0.05
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (417 bp):
ACCTCTAGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAG
CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAAT
ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
TAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAATACCTCAGCG
TGCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAATAAAAAATACCTC
AACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAAT
ACCTCAGCGTGCCCCGAGGCTCAACTC
Found at i:48192089 original size:72 final size:69
Alignment explanation
Indices: 48191801--48192115 Score: 368
Period size: 69 Copynumber: 4.5 Consensus size: 69
48191791 AAAAATTAAA
* * * * *
48191801 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACT-AAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACA-AAATTAAAAATACCTCAACGTG
48191864 CCCCG
65 CCCCG
* *
48191869 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAA-AAAAAATACCTCAACGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-AAAACAAAATTAAAAATACCTCAACGTG
* **
48191933 TCTTG
65 CCCCG
* * * *
48191938 AGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTAAAACACAAAAATTGAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAA-AC-AAAATTAAAAATACCTCAACGT
48192002 GCCCCG
64 GCCCCG
*
48192008 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAACAATTAAAAATACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--AAAACAA-AATTAAAAATACCTCAACG
* **
48192073 TGTCTTG
63 TGCCCCG
*
48192080 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
48192116 CCTTGAAAAG
Statistics
Matches: 209, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
67 3 0.01
68 30 0.14
69 59 0.28
70 53 0.25
71 4 0.02
72 57 0.27
73 3 0.01
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACAAAATTAAAAATACCTCAACGTGC
CCCG
Found at i:48197134 original size:12 final size:12
Alignment explanation
Indices: 48197114--48197149 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
48197104 TGGGATATGC
*
48197114 AATGTATGAATG
1 AATGCATGAATG
48197126 AATGCATGAATG
1 AATGCATGAATG
48197138 AATGCATGAATG
1 AATGCATGAATG
48197150 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:48199891 original size:11 final size:11
Alignment explanation
Indices: 48199857--48199895 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
48199847 ATATATAAAG
48199857 AAAGAAAAAAA
1 AAAGAAAAAAA
*
48199868 AAACAACAAAAA
1 AAAGAA-AAAAA
*
48199880 AAAGAAAGAAA
1 AAAGAAAAAAA
48199891 AAAGA
1 AAAGA
48199896 TTCGAAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.85, C:0.05, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:48200237 original size:17 final size:17
Alignment explanation
Indices: 48200195--48200237 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
48200185 TTTTTTCTTC
*
48200195 TTTTTTTTTGGGGTTAG
1 TTTTTTTTTGGGGTAAG
*
48200212 GTTTTTTTT-GGGTAAG
1 TTTTTTTTTGGGGTAAG
48200228 TTTTTCTTTT
1 TTTTT-TTTT
48200238 TCTTTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.07, C:0.02, G:0.23, T:0.67
Consensus pattern (17 bp):
TTTTTTTTTGGGGTAAG
Found at i:48200247 original size:16 final size:15
Alignment explanation
Indices: 48200228--48200263 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
48200218 TTTGGGTAAG
*
48200228 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
48200244 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
48200259 TTTTT
1 TTTTT
48200264 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:48204000 original size:39 final size:40
Alignment explanation
Indices: 48203901--48204009 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
48203891 ATTGAATGAT
* * * * *
48203901 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
48203941 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
48203981 ATCC-GGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
48204010 AAATTGTGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
39 23 0.39
40 36 0.61
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:48205776 original size:68 final size:67
Alignment explanation
Indices: 48205704--48205853 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
48205694 CATCATGTGT
* * * *
48205704 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
48205766 ATGTAG
62 ATGTAG
** * *
48205772 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
48205837 AG
66 AG
48205839 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
48205854 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:48205809 original size:64 final size:64
Alignment explanation
Indices: 48205728--48205911 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
48205718 AGACATTATG
* *
48205728 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
48205792 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
48205857 AA
63 AA
* * * *
48205859 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
48205912 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:48210188 original size:68 final size:67
Alignment explanation
Indices: 48210116--48210265 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
48210106 CATCATGTGT
* * * *
48210116 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
48210178 ATGTAG
62 ATGTAG
** * *
48210184 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
48210249 AG
66 AG
48210251 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
48210266 GATAAATTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:48210221 original size:64 final size:64
Alignment explanation
Indices: 48210140--48210323 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
48210130 AGACATTATG
* *
48210140 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
48210204 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
48210269 AA
63 AA
* * * * * *
48210271 AT-TGGCCAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
48210324 CGAACTATAT
Statistics
Matches: 97, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 32 0.33
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:48213017 original size:18 final size:17
Alignment explanation
Indices: 48212990--48213024 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48212980 TCGAAGCAAC
48212990 AATTTCAAAAACAGAAA
1 AATTTCAAAAACAGAAA
*
48213007 AATTATCAAAAACCGAAA
1 AATT-TCAAAAACAGAAA
48213025 CCAAACTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.63, C:0.14, G:0.06, T:0.17
Consensus pattern (17 bp):
AATTTCAAAAACAGAAA
Found at i:48219534 original size:40 final size:40
Alignment explanation
Indices: 48219473--48219635 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
48219463 CGGAATTTAG
* ** *
48219473 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
48219513 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
48219553 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
48219593 CCGGATATAATC-ACTAGCATAAATGCCTTCGGG-CTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
48219632 CCGG
1 CCGG
48219636 GTATCATTCA
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
39 9 0.08
40 99 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:48227600 original size:40 final size:40
Alignment explanation
Indices: 48227539--48227702 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
48227529 CGGAATTTAG
* ** *
48227539 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
48227579 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
48227619 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * * *
48227659 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGGCTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
48227699 CCGG
1 CCGG
48227703 GTATCATTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 108 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:48228459 original size:2 final size:2
Alignment explanation
Indices: 48228452--48228477 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
48228442 ATGTGCAAAC
48228452 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
48228478 GCTAAGCCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48232790 original size:31 final size:31
Alignment explanation
Indices: 48232754--48232815 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
48232744 TGATCCAAAC
48232754 AATAGTTGCCTAAATCATTTTCAACATTCCA
1 AATAGTTGCCTAAATCATTTTCAACATTCCA
48232785 AATAGTTGCCTAAATCATTTTCAACATTCCA
1 AATAGTTGCCTAAATCATTTTCAACATTCCA
48232816 TATTTCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (31 bp):
AATAGTTGCCTAAATCATTTTCAACATTCCA
Found at i:48234137 original size:27 final size:27
Alignment explanation
Indices: 48234105--48234183 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
48234095 AGTTGCCAGA
* * *
48234105 AACAGTAAATGTGGCAAAGCCACTAGT
1 AACAGTAAATGTGGCAAAGACACCACT
* * *
48234132 ATCAGTAATTGTGGCATAGACACCACT
1 AACAGTAAATGTGGCAAAGACACCACT
* * *
48234159 AACAGTGAATGTGGCATAGTCACCA
1 AACAGTAAATGTGGCAAAGACACCA
48234184 GTACAGAACT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
AACAGTAAATGTGGCAAAGACACCACT
Found at i:48234356 original size:26 final size:26
Alignment explanation
Indices: 48234327--48234430 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 26
48234317 GGGCATAATC
48234327 GTCATTTTACCATACAGGGGTATTA-G
1 GTCATTTTACC-TACAGGGGTATTACG
*
48234353 GTCAATTTACTCTACAGGGGCT-TTACG
1 GTCATTTTAC-CTACAGGGG-TATTACG
* *
48234380 GTCATTTCACACTACAGGGGCATTACG
1 GTCATTTTAC-CTACAGGGGTATTACG
** *
48234407 GTTTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-CAGGGGTATT
48234431 TTAGTCATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
26 23 0.37
27 40 0.63
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:48234500 original size:27 final size:28
Alignment explanation
Indices: 48234470--48234567 Score: 96
Period size: 27 Copynumber: 3.6 Consensus size: 28
48234460 GGTAAATCTA
*
48234470 CAAATCAAGGGTATTT-TAGTAATTATG
1 CAAATCAAGGGTATTTATAGTAATTTTG
* *
48234497 CAAACCAATGGTATTTATA-TAATTTTTG
1 CAAATCAAGGGTATTTATAGTAA-TTTTG
* *
48234525 -AAAGTCAAGGGTATTTCT-GTAATTTTC
1 CAAA-TCAAGGGTATTTATAGTAATTTTG
*
48234552 CAAATTAAGGGTATTT
1 CAAATCAAGGGTATTT
48234568 CGGTACTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
27 35 0.60
28 23 0.40
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (28 bp):
CAAATCAAGGGTATTTATAGTAATTTTG
Found at i:48234632 original size:27 final size:27
Alignment explanation
Indices: 48234532--48234674 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
48234522 TTGAAAGTCA
* **
48234532 AGGGTATTTCTG-TAATTTTCCAAATTA
1 AGGGTATTTC-GATAATTTTACAAATCG
* * *
48234559 AGGGTATTTCGGTACTTTT-CAAAAT-T
1 AGGGTATTTCGATAATTTTAC-AAATCG
* * *
48234585 AGGGGTATTTTGGTAACTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
* *
48234613 CGGGTATTTCGATAATTTTACAAGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
* **
48234640 AAGGTATTTCGATAATTTTACAGGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
48234667 AGGGTATT
1 AGGGTATT
48234675 GTGACAGCCC
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
26 3 0.03
27 92 0.96
28 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:48236275 original size:27 final size:28
Alignment explanation
Indices: 48236219--48236286 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 28
48236209 AAATTTGTAC
48236219 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
48236247 AGCACTAAGTGTGTGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
48236274 AGCACTAAGTGTG
1 AGCACTAAGTGTG
48236287 GGGACTCACT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:48236299 original size:27 final size:27
Alignment explanation
Indices: 48236243--48236300 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
48236233 GAGTTTGATC
* * * *
48236243 ATATAGCACTAAGTGTGTGAGTTGATT
1 ATATAGCACTAAGTGTGGGAGCTCACT
48236270 ATATAGCACTAAGTGTGGG-GACTCACT
1 ATATAGCACTAAGTGTGGGAG-CTCACT
48236297 ATAT
1 ATAT
48236301 GCTTTTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGGGAGCTCACT
Found at i:48237810 original size:27 final size:27
Alignment explanation
Indices: 48237780--48237877 Score: 153
Period size: 27 Copynumber: 3.6 Consensus size: 27
48237770 GGGTGTTACA
*
48237780 GGTATTTTGGTAATTTCACAAATCT-GG
1 GGTATTTTGGTAATTTTACAAA-CTAGG
*
48237807 GGTATTTTGGTTATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
48237834 GGTATTTTGGTAATTTTACAAACTAAG
1 GGTATTTTGGTAATTTTACAAACTAGG
48237861 GGTATTTTGGTAATTTT
1 GGTATTTTGGTAATTTT
48237878 GTAAACCAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
26 2 0.03
27 64 0.97
ACGTcount: A:0.27, C:0.07, G:0.21, T:0.45
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:48237883 original size:27 final size:27
Alignment explanation
Indices: 48237780--48237899 Score: 145
Period size: 27 Copynumber: 4.5 Consensus size: 27
48237770 GGGTGTTACA
* *
48237780 GGTATTTTGGTAATTTCACAAATCT-GG
1 GGTATTTTGGTAATTTTACAAA-CTAAG
* *
48237807 GGTATTTTGGTTATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAAG
48237834 GGTATTTTGGTAATTTTACAAACTAAG
1 GGTATTTTGGTAATTTTACAAACTAAG
** * *
48237861 GGTATTTTGGTAATTTTGTAAACCAAA
1 GGTATTTTGGTAATTTTACAAACTAAG
48237888 GGTA-TTTGGTAA
1 GGTATTTTGGTAA
48237900 CTCTACCCTA
Statistics
Matches: 84, Mismatches: 8, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
26 10 0.12
27 74 0.88
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAAG
Found at i:48237931 original size:27 final size:27
Alignment explanation
Indices: 48237896--48237966 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
48237886 AAGGTATTTG
*
48237896 GTAACTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
*
48237923 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
48237950 GTAATGCTAGCCTACAG
1 GTAATTCTACCCTACAG
48237967 ATATGAGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGCATTTCA
Found at i:48242119 original size:3 final size:3
Alignment explanation
Indices: 48242111--48242153 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
48242101 TATTTATAAA
48242111 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
48242154 GATAGGAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:48247416 original size:43 final size:42
Alignment explanation
Indices: 48247369--48247467 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
48247359 TCCCAGACGA
* * * **
48247369 GGTCTTACATGTAATCAGATATCGATGCCACTGTCCCAGCCAG
1 GGTCTTACACGTAATCAGATA-CGATGCCAATATCCCAAACAG
* * *
48247412 GGTCTTACACGAAATCATATACGATGCCAATATCCCAAACAT
1 GGTCTTACACGTAATCAGATACGATGCCAATATCCCAAACAG
48247454 GGTCTTACACGTAA
1 GGTCTTACACGTAA
48247468 ATCTCAAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 29 0.62
43 18 0.38
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGTAATCAGATACGATGCCAATATCCCAAACAG
Found at i:48247458 original size:42 final size:43
Alignment explanation
Indices: 48247350--48247519 Score: 157
Period size: 43 Copynumber: 4.0 Consensus size: 43
48247340 AGCTTATACA
* * * *
48247350 ATGCCAACGTCCCAGACGA-GGTCTTACATGTAATCAGATATCG
1 ATGCCAATGTCCCAGAC-ATGGTCTTACACGAAATCATATATCG
* * *
48247393 ATGCCACTGTCCCAGCCAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATATCG
* * * *
48247435 ATGCCAATATCCCAAACATGGTCTTACACGTAAATC-TCAAATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCAT-ATATCG
** * *
48247479 ATGCCAATGTCCCAGATGTGGTCTTACACGAAGTCACATAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATAT
48247520 TGGAATCCTA
Statistics
Matches: 102, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 29 0.28
43 46 0.45
44 27 0.26
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATATCG
Found at i:48260423 original size:28 final size:28
Alignment explanation
Indices: 48260358--48260456 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
48260348 CATGAGATTG
* * *
48260358 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
48260387 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
48260415 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
48260443 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48260457 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:48264274 original size:12 final size:12
Alignment explanation
Indices: 48264257--48264281 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48264247 CAAAACCGCT
48264257 TTTAGAACGAGG
1 TTTAGAACGAGG
48264269 TTTAGAACGAGG
1 TTTAGAACGAGG
48264281 T
1 T
48264282 ACGGTCACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (12 bp):
TTTAGAACGAGG
Found at i:48268441 original size:40 final size:39
Alignment explanation
Indices: 48268371--48268533 Score: 193
Period size: 40 Copynumber: 4.1 Consensus size: 39
48268361 CGGAATTTAG
** *
48268371 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
48268411 CCGGGTATAGCACTCGCACAAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACACTCGCACAAA-TGCCTTCGGGTCTTAAC
48268451 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAAC-ACTCGCACAAATGCCTTCGGGTCTTAAC
* * * *
48268491 CCGGATATAATCACTAGCA-TAATGCCTTCGGGGCTTAGC
1 CCGGATATAA-CACTCGCACAAATGCCTTCGGGTCTTAAC
48268530 CCGG
1 CCGG
48268534 GTATCATTCA
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 30 0.28
40 65 0.61
41 12 0.11
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CCGGATATAACACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:48268472 original size:80 final size:79
Alignment explanation
Indices: 48268367--48268533 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
48268357 TCTTCGGAAT
* * * *
48268367 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTAT-AGCACTCGCAC
1 TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCA-
*
48268430 AAATTGCCTTCGGGTC
65 AAA-TGCCTTCGGGGC
** * *
48268446 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCAA
48268511 AATGCCTTCGGGGC
66 AATGCCTTCGGGGC
48268525 TTAGCCCGG
1 TTAGCCCGG
48268534 GTATCATTCA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 24 0.31
80 45 0.58
81 8 0.10
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCAA
AATGCCTTCGGGGC
Found at i:48276504 original size:40 final size:40
Alignment explanation
Indices: 48276459--48276606 Score: 190
Period size: 40 Copynumber: 3.7 Consensus size: 40
48276449 ATAACCACAA
* * *
48276459 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
*
48276499 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
** *
48276539 ATACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAA-CAACTC
* * *
48276579 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
48276607 GTATCATTCA
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 93 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACTC
Found at i:48279758 original size:28 final size:28
Alignment explanation
Indices: 48279695--48279793 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
48279685 CATGAGATTG
* * * *
48279695 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTC-GACTATATA
* * * *
48279724 GAACTAAGTGTGTGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGACTATATA
48279752 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
48279780 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48279794 GGCTTATTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.73
29 15 0.25
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:48284374 original size:40 final size:39
Alignment explanation
Indices: 48284299--48284506 Score: 164
Period size: 40 Copynumber: 5.2 Consensus size: 39
48284289 CAATTGAATG
* * * * *
48284299 ATATCCGGGCTAAGTCCCGAAGACATTTATCCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTAATT
* * * **
48284339 ATATCCGGGTTAAGACCCGAAGGCCATTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTGTGCAAGTAATT
* * **
48284379 ACATCCGGGCTAATACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATT
* * * **
48284419 AAATCCGGGCTAATATCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTAATT
* * **
48284459 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATT
48284499 ATATCCGG
1 ATATCCGG
48284507 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 6 0.04
40 128 0.93
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAATT
Found at i:48284439 original size:80 final size:80
Alignment explanation
Indices: 48284341--48284506 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 80
48284331 TAGTAATTAT
* * *
48284341 ATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGT-GACCACATCCGGGCTAATACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCA
*
48284404 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* * ** *
48284421 ATCCGGGCTAATATCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
* *
48284486 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
48284501 ATCCGG
1 ATCCGG
48284507 TTGTATTCCG
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.03
80 69 0.95
81 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:48287356 original size:40 final size:40
Alignment explanation
Indices: 48287255--48287510 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
48287245 TGGATGATAA
* * *
48287255 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
48287295 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48287334 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
48287374 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
* * *
48287414 CCGGGATAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48287454 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
48287493 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48287511 TACTTGGTTG
Statistics
Matches: 197, Mismatches: 14, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
38 17 0.09
39 45 0.23
40 133 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48301103 original size:43 final size:43
Alignment explanation
Indices: 48300932--48301103 Score: 145
Period size: 43 Copynumber: 4.0 Consensus size: 43
48300922 ACATAAGATC
* *
48300932 CGATATGTG-TTATCGTGTAAGACCATGTCTGGGACGTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* ** * * * *
48300975 TGACCTATGATTTATGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATTTGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
48301019 C-ATATTTGATTTCGTGTAAGACC-CTGTTTGGGGCAG-AGGCAT
1 CGATATTTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* *
48301061 CGATATTTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
48301104 TGTACAAGCT
Statistics
Matches: 99, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
42 26 0.26
43 41 0.41
44 29 0.29
45 3 0.03
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:48304271 original size:46 final size:46
Alignment explanation
Indices: 48304221--48304390 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
48304211 TTGAGCATCC
48304221 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * *
48304267 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
***
48304314 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
48304360 GAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48304391 GGGGCAGGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.56
47 28 0.28
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:48304374 original size:93 final size:93
Alignment explanation
Indices: 48304215--48304385 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
48304205 GGATGGTTGA
***
48304215 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCTGAACTCGTTGAGT
48304280 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
48304308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCTGAACTCGTTGAGT
*
48304373 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
48304386 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:48312850 original size:43 final size:43
Alignment explanation
Indices: 48312786--48312903 Score: 177
Period size: 43 Copynumber: 2.7 Consensus size: 43
48312776 CCGATATAAG
48312786 TTCGGTTTAATCT-ATTGGCACTAAGTGTGCGATACAATTATAGC
1 TTCGG-TTAAT-TAATTGGCACTAAGTGTGCGATACAATTATAGC
48312830 TTCGGTTAATTAATTGGCACTAAGTGTAG-GATACAATTATAGC
1 TTCGGTTAATTAATTGGCACTAAGTGT-GCGATACAATTATAGC
* *
48312873 TTCGGTAAATTAATTAGCACTAAGTGTGCGA
1 TTCGGTTAATTAATTGGCACTAAGTGTGCGA
48312904 GTTTATTGAA
Statistics
Matches: 69, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
42 2 0.03
43 61 0.88
44 6 0.09
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.35
Consensus pattern (43 bp):
TTCGGTTAATTAATTGGCACTAAGTGTGCGATACAATTATAGC
Found at i:48325483 original size:40 final size:39
Alignment explanation
Indices: 48325392--48325543 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
48325382 ATAAGCATGT
* * * *
48325392 GCACAAATGCCTTAGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATG-CTA
**
48325432 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATA-ATGCTA
* * *
48325472 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAA-TGCTA
* * *
48325512 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
48325544 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 89 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATGCTA
Found at i:48328286 original size:47 final size:47
Alignment explanation
Indices: 48328217--48328339 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
48328207 AACAGCTCGT
48328217 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
48328264 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
48328311 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
48328340 TAATGTGAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:48328376 original size:48 final size:48
Alignment explanation
Indices: 48328317--48328584 Score: 428
Period size: 48 Copynumber: 5.6 Consensus size: 48
48328307 TGAAAGTGTA
48328317 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
48328365 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
48328413 TATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * *
48328461 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
48328509 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
48328557 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
48328585 AGAATGTTGT
Statistics
Matches: 205, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 205 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:48328683 original size:37 final size:37
Alignment explanation
Indices: 48328633--48328718 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
48328623 GGAAATATAT
*
48328633 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48328670 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48328707 TCCGGGTAAGAC
1 TCCGGGTAAGAC
48328719 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48330679 original size:40 final size:40
Alignment explanation
Indices: 48330613--48331003 Score: 608
Period size: 40 Copynumber: 9.8 Consensus size: 40
48330603 AAGAATTGAG
* * *
48330613 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
48330653 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
48330693 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
48330733 AGTGATGTACCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
48330773 AGTGATGTATCC-GATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
48330812 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
48330852 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TAGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGT-GCT
48330892 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
48330932 AGTAAGGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
48330972 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
48331004 ATCATGCTGG
Statistics
Matches: 328, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
39 42 0.13
40 285 0.87
41 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:48330960 original size:199 final size:199
Alignment explanation
Indices: 48330613--48330984 Score: 638
Period size: 199 Copynumber: 1.9 Consensus size: 199
48330603 AAGAATTGAG
*
48330613 AGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCAGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* * * *
48330678 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAC
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAAGGCAA
* *
48330743 CCGGATTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGATTAAGTTCCGAAGAGCATTCG
131 CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGATTAAGTTCCGAAGAGCATTCG
48330808 TGCT
196 TGCT
* * *
48330812 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCAGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
48330877 AAGAGCATTC-TAGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAAGGCA
66 AAGAGCATTCGT-GCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAAGGCA
48330941 ACCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG
130 ACCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG
48330985 GGCTAGGTCC
Statistics
Matches: 162, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
198 1 0.01
199 161 0.99
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (199 bp):
AGTGATATATCCAGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAAGGCAA
CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGATTAAGTTCCGAAGAGCATTCG
TGCT
Found at i:48334539 original size:47 final size:47
Alignment explanation
Indices: 48334470--48334592 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
48334460 AACAGCTCGT
48334470 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
48334517 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
48334564 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
48334593 TAATGTGAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:48334629 original size:48 final size:48
Alignment explanation
Indices: 48334570--48334837 Score: 428
Period size: 48 Copynumber: 5.6 Consensus size: 48
48334560 TGAAAGTGTA
48334570 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
48334618 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
48334666 TATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * *
48334714 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
48334762 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
48334810 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
48334838 AGAATGTTGT
Statistics
Matches: 205, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 205 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:48334936 original size:37 final size:37
Alignment explanation
Indices: 48334886--48334971 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
48334876 GGAAATATAT
*
48334886 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48334923 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48334960 TCCGGGTAAGAC
1 TCCGGGTAAGAC
48334972 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48340796 original size:30 final size:30
Alignment explanation
Indices: 48340762--48340822 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
48340752 TTCCCGAGCC
48340762 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
48340792 TAGGGGCAAAATTGTAATTTTGTAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
48340822 T
1 T
48340823 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:48345742 original size:29 final size:28
Alignment explanation
Indices: 48345701--48345787 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 28
48345691 GACTGTAAAA
*
48345701 GTGATTGGGCCTAGTGGGCCATAT-AGTT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
* *
48345729 GTGATTTGGGCCTAATAGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
* *
48345758 GAGATTGGGCCTAGTGGGCCATAAGAAT
1 GTGATTGGGCCTAGTGGGCCATATGAAT
48345786 GT
1 GT
48345788 ATGTGGACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 26 0.53
29 22 0.45
30 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:48347372 original size:46 final size:46
Alignment explanation
Indices: 48347305--48347433 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
48347295 TGTAACCCGC
* *
48347305 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* *
48347351 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
48347397 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
48347434 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 2 0.03
46 75 0.97
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:48347452 original size:46 final size:45
Alignment explanation
Indices: 48347313--48347452 Score: 124
Period size: 46 Copynumber: 3.0 Consensus size: 45
48347303 GCCCATAAGC
* * * *
48347313 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGATGCTCACCATCC-T-AGT
* *** *
48347359 GAACTCGGACTCAACTCAACAAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
48347405 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
48347451 GA
1 GA
48347453 CATGTCACTT
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
45 2 0.02
46 75 0.90
47 1 0.01
48 5 0.06
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:48352740 original size:27 final size:28
Alignment explanation
Indices: 48352710--48352779 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
48352700 ATAGTGAATC
*
48352710 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
48352737 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
48352765 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48352780 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:48360618 original size:27 final size:28
Alignment explanation
Indices: 48360588--48360657 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
48360578 ATAGTGAATC
*
48360588 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
48360615 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
48360643 CGCATACTTAGTGCT
1 CGCACACTTAGTGCT
48360658 GTACAAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 21 0.58
28 15 0.42
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:48365899 original size:93 final size:93
Alignment explanation
Indices: 48365787--48365958 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
48365777 CGCCCATAAG
* *
48365787 CGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48365852 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
48365880 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48365945 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
48365959 TCAACCATCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:48365955 original size:46 final size:46
Alignment explanation
Indices: 48365780--48365955 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
48365770 TGTAACCCGC
* * * *
48365780 CCATAAGCGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
48365826 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
48365876 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
48365919 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
48365956 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48372016 original size:16 final size:16
Alignment explanation
Indices: 48371992--48372037 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
48371982 GTAGATCGGT
*
48371992 AAATCCCGAAAAGCTG
1 AAATGCCGAAAAGCTG
* *
48372008 AAATGCCGAAAATCTT
1 AAATGCCGAAAAGCTG
48372024 AAATGCCGAAAAGC
1 AAATGCCGAAAAGC
48372038 CAAAATTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.46, C:0.22, G:0.17, T:0.15
Consensus pattern (16 bp):
AAATGCCGAAAAGCTG
Found at i:48372043 original size:16 final size:16
Alignment explanation
Indices: 48371992--48372043 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
48371982 GTAGATCGGT
* *
48371992 AAATCCCGAAAAGCTG
1 AAATGCCGAAAAGCTA
* *
48372008 AAATGCCGAAAATCTT
1 AAATGCCGAAAAGCTA
*
48372024 AAATGCCGAAAAGCCA
1 AAATGCCGAAAAGCTA
48372040 AAAT
1 AAAT
48372044 TTTGGCTATG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.48, C:0.21, G:0.15, T:0.15
Consensus pattern (16 bp):
AAATGCCGAAAAGCTA
Found at i:48376452 original size:29 final size:29
Alignment explanation
Indices: 48376419--48376550 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
48376409 GTGACGAGAT
48376419 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
48376448 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
48376477 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
48376506 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
48376535 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
48376551 GGCTTAAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:48377632 original size:15 final size:17
Alignment explanation
Indices: 48377598--48377633 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
48377588 AATATGCCCG
48377598 AACCAATCCGGCTGTCC
1 AACCAATCCGGCTGTCC
48377615 AACC-ATCCGGCT-TCC
1 AACCAATCCGGCTGTCC
48377630 AACC
1 AACC
48377634 CCGAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 8 0.42
17 4 0.21
ACGTcount: A:0.25, C:0.44, G:0.14, T:0.17
Consensus pattern (17 bp):
AACCAATCCGGCTGTCC
Found at i:48383789 original size:29 final size:29
Alignment explanation
Indices: 48383756--48383887 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
48383746 GTGACGAGAT
48383756 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
48383785 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
48383814 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
48383843 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
48383872 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
48383888 GGCTTAAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:48386549 original size:26 final size:28
Alignment explanation
Indices: 48386484--48386552 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
48386474 AAACTTGTAC
48386484 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
48386512 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
48386539 -GCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
48386553 GACTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 14 0.35
27 9 0.22
28 17 0.43
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:48386563 original size:26 final size:26
Alignment explanation
Indices: 48386485--48386566 Score: 69
Period size: 26 Copynumber: 3.1 Consensus size: 26
48386475 AACTTGTACA
* *
48386485 GCACTAAGTGTGCGAGTTTGA-TCATAT
1 GCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
48386512 AGCACTAAGTGTGCGAGTTGATTATAT
1 -GCACTAAGTGTGCGAGCTCACTATAT
48386539 GCACTAAGTGTGCG-GACTCACTATAT
1 GCACTAAGTGTGCGAG-CTCACTATAT
48386565 GC
1 GC
48386567 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
25 1 0.02
26 23 0.47
27 8 0.16
28 17 0.35
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGCTCACTATAT
Found at i:48391697 original size:49 final size:49
Alignment explanation
Indices: 48391625--48391941 Score: 580
Period size: 49 Copynumber: 6.5 Consensus size: 49
48391615 ATGAGATATA
*
48391625 TATATGTGATAAGGCCTAATGGCCGAGGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
48391674 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
48391723 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
48391772 TATATGTGATAAGGCCTAATGGCCGAGGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
48391821 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
48391870 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
48391919 TATATGTGAGAAGGCCTAATGGC
1 TATATGTGATAAGGCCTAATGGC
48391942 TAATGTAAAA
Statistics
Matches: 261, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 261 1.00
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:48391729 original size:27 final size:27
Alignment explanation
Indices: 48391699--48391781 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
48391689 CTAATGGCCG
48391699 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
* *** ***
48391726 ATGTGAT-AAGGCCTAA-TGGCCG-A-
1 ATGTGATGAATGTGAAAGTGTATGTAT
48391749 -TGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
48391775 ATGTGAT
1 ATGTGAT
48391782 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATGTAT
Found at i:48392093 original size:37 final size:37
Alignment explanation
Indices: 48392043--48392127 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
48392033 GGAATATGTT
*
48392043 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
48392080 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
48392117 CCGGGTAAGAC
1 CCGGGTAAGAC
48392128 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:48394242 original size:29 final size:29
Alignment explanation
Indices: 48394210--48394340 Score: 253
Period size: 29 Copynumber: 4.5 Consensus size: 29
48394200 CATTAACCGA
*
48394210 GCACTATGTGTGCGAGATTAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
48394239 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
48394268 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
48394297 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
48394326 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
48394341 CTATGTGTGC
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 101 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:48394345 original size:12 final size:12
Alignment explanation
Indices: 48394328--48394352 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48394318 TAATCGAGGC
48394328 ACTATGTGTGCG
1 ACTATGTGTGCG
48394340 ACTATGTGTGCG
1 ACTATGTGTGCG
48394352 A
1 A
48394353 GATCAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (12 bp):
ACTATGTGTGCG
Found at i:48394356 original size:41 final size:41
Alignment explanation
Indices: 48394299--48394381 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
48394289 TAATCGAGGC
48394299 ACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCG
1 ACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCG
* *
48394340 ACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGCG
1 ACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCG
48394381 A
1 A
48394382 GTTTTTCAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.28
Consensus pattern (41 bp):
ACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCG
Found at i:48397899 original size:49 final size:49
Alignment explanation
Indices: 48397827--48398094 Score: 491
Period size: 49 Copynumber: 5.5 Consensus size: 49
48397817 ATGAGATATA
*
48397827 TATATGTGATAAGGCCTAATGGCCGAGGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
48397876 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
48397925 TATATGTGATAAGGCCTAATGGCCGAGGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
48397974 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
* *
48398023 TATATGTGATATGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
48398072 TATATGTGATAAGGCCTAATGGC
1 TATATGTGATAAGGCCTAATGGC
48398095 TAATGTAAAA
Statistics
Matches: 211, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 211 1.00
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:48398246 original size:37 final size:37
Alignment explanation
Indices: 48398196--48398280 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
48398186 GGAATATGTT
*
48398196 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
48398233 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
48398270 CCGGGTAAGAC
1 CCGGGTAAGAC
48398281 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:48404820 original size:27 final size:28
Alignment explanation
Indices: 48404764--48404833 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
48404754 AAACTTGTAC
48404764 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
48404792 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
48404819 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
48404834 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:48404844 original size:27 final size:27
Alignment explanation
Indices: 48404764--48404845 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
48404754 AAACTTGTAC
* *
48404764 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
48404792 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
48404819 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
48404846 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:48409491 original size:21 final size:21
Alignment explanation
Indices: 48409465--48409517 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
48409455 AGGTGACAAT
48409465 AGACCCTCGATTGGGTCGTTA
1 AGACCCTCGATTGGGTCGTTA
48409486 AGACCCTCGATTGGGTCGTTA
1 AGACCCTCGATTGGGTCGTTA
48409507 AGACCCTCGAT
1 AGACCCTCGAT
48409518 CTATAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (21 bp):
AGACCCTCGATTGGGTCGTTA
Found at i:48411283 original size:27 final size:27
Alignment explanation
Indices: 48411253--48411311 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
48411243 CGACTTGTAA
48411253 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
***
48411280 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
48411307 AATTA
1 AATTA
48411312 TCGTTTTACC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 26 0.93
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:48411318 original size:27 final size:27
Alignment explanation
Indices: 48411270--48411787 Score: 614
Period size: 27 Copynumber: 19.2 Consensus size: 27
48411260 AAAGTACTCC
*
48411270 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
48411297 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
48411324 CGATTTTTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
48411351 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
48411378 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** * *
48411405 CGATTTGTAAAATTACCGTTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
*
48411432 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
48411459 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
48411486 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
48411513 AAATTTACAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
48411540 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
48411567 C-ACTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
48411594 CAATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
48411621 C-AGTTTACAAAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
48411648 CGATTTACAAAATTACCGTTTTATCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
48411675 CGATTTGTAAAATTACCGTTTTACCCTT
1 CGATTTACAGAATTACCGTTTTACCC-T
* *
48411703 C-ATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
48411729 C-AGTTTACAAAATTATCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
48411756 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
48411783 TGATT
1 CGATT
48411788 GTGAAATTAC
Statistics
Matches: 424, Mismatches: 58, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.01
27 412 0.97
28 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Done.