Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 172 of 345
Found at i:48411822 original size:27 final size:27
Alignment explanation
Indices: 48411800--48411987 Score: 223
Period size: 27 Copynumber: 7.0 Consensus size: 27
48411790 GAAATTACTA
* * *
48411800 AAATACCCCTGTAGGGTAGAATTTCTG
1 AAATACCCCTATAGGGTAGAATTACCG
* *
48411827 AAATACCCCTATAAGGTAGAATTACCA
1 AAATACCCCTATAGGGTAGAATTACCG
* * *
48411854 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTATAGGGTAGAATTACCG
* *
48411881 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTATAGGGTAGAATTACCG
* *
48411908 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCCTATAGGGTAGAATTACCG
48411935 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
* * * * *
48411962 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTATAGGGTAGAATTACC
48411988 ATTTTGCCCC
Statistics
Matches: 137, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAATTACCG
Found at i:48411894 original size:81 final size:81
Alignment explanation
Indices: 48411792--48411985 Score: 264
Period size: 81 Copynumber: 2.4 Consensus size: 81
48411782 TTGATTGTGA
* *
48411792 AATTACTAAAATACCCCTGTAGGGTAGAATT-TCTGAAATACCCCTATAAGGTAGAATTACCAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCCTATAAGGTAGAAATACCAAA
*
48411856 ATACCCTTATAGGATAG
65 ATACCCCTATAGGATAG
* * *
48411873 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCAAAA
*
48411938 TACCCCTATAGGGTAG
66 TACCCCTATAGGATAG
* * * * *
48411954 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTA
48411986 CCATTTTGCC
Statistics
Matches: 100, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
81 98 0.98
82 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCAAAA
TACCCCTATAGGATAG
Found at i:48412247 original size:27 final size:27
Alignment explanation
Indices: 48412186--48412237 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
48412176 GGAGGAAGCG
48412186 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTATGCCACAAATATCTA
*
48412213 TTCTGGTGGCTGTGCCAC-AATATCT
1 TTCTGGTGGCTATGCCACAAATATCT
48412238 GTATTTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
TTCTGGTGGCTATGCCACAAATATCTA
Found at i:48412387 original size:22 final size:22
Alignment explanation
Indices: 48412355--48412413 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
48412345 CCCGTTATTA
*
48412355 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
48412377 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
48412399 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
48412414 ACATATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:48412600 original size:27 final size:27
Alignment explanation
Indices: 48412580--48412651 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
48412570 GGTGGGTTTG
*
48412580 CCACATTATCTG-ATTCTGGTGGCTCTA
1 CCACAATATCTGTA-TCTGGTGGCTCTA
* *
48412607 CCACAATATCTGTATCTGGTGACTCTG
1 CCACAATATCTGTATCTGGTGGCTCTA
* *
48412634 TCACGATATCTGT-TCTGG
1 CCACAATATCTGTATCTGG
48412652 CAGCCATGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.13
27 33 0.85
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
CCACAATATCTGTATCTGGTGGCTCTA
Found at i:48412808 original size:6 final size:6
Alignment explanation
Indices: 48412794--48412943 Score: 114
Period size: 6 Copynumber: 24.8 Consensus size: 6
48412784 CTGTCACCTA
* * *
48412794 ATTCCG ATTCTG ATTCTG ATTCT- ATTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
48412842 -TTACTG ATTTTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* * *
48412891 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG -TTACTG ATTTTG ATTTTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
48412939 ATTCT
1 ATTCT
48412944 CATTTTGGTT
Statistics
Matches: 117, Mismatches: 14, Indels: 26
0.75 0.09 0.17
Matches are distributed among these distances:
5 11 0.09
6 95 0.81
7 9 0.08
8 2 0.02
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:48412835 original size:24 final size:24
Alignment explanation
Indices: 48412803--48412943 Score: 129
Period size: 24 Copynumber: 5.6 Consensus size: 24
48412793 AATTCCGATT
*
48412803 CTGATTCTGATTCTATTACTAATA
1 CTGATTCTGATTCTGTTACTAATA
* *
48412827 CTGATTCTGATTCTGTTACTGATT
1 CTGATTCTGATTCTGTTACTAATA
* *
48412851 TTGATTCTGATTCTGTCACCTAATTCTGA
1 CTGATTCTGATTCTGTTA-CTAA---T-A
48412880 TTCTGATTCTGATTCTGTTACTAATA
1 --CTGATTCTGATTCTGTTACTAATA
* * *
48412906 TTGATTCTGATTCTGTTACTGATT
1 CTGATTCTGATTCTGTTACTAATA
* *
48412930 TTGATTTTGATTCT
1 CTGATTCTGATTCT
48412944 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
24 71 0.73
25 3 0.03
26 1 0.01
27 1 0.01
28 1 0.01
30 4 0.04
31 16 0.16
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (24 bp):
CTGATTCTGATTCTGTTACTAATA
Found at i:48412886 original size:55 final size:54
Alignment explanation
Indices: 48412827--48412943 Score: 171
Period size: 55 Copynumber: 2.1 Consensus size: 54
48412817 ATTACTAATA
* *
48412827 CTGATTCTGATTCTGTTACTGATTTTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGTCA-CTAATTCTGATT
* * *
48412882 CTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGTTACTGATTTTGATT
1 CTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGTCACTAATTCTGATT
*
48412936 TTGATTCT
1 CTGATTCT
48412944 CATTTTGGTT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
54 17 0.30
55 39 0.70
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (54 bp):
CTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGTCACTAATTCTGATT
Found at i:48412887 original size:31 final size:31
Alignment explanation
Indices: 48412845--48412920 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
48412835 GATTCTGTTA
*
48412845 CTGATTTTGATTCTGATTCTGTCACCTAAT-T
1 CTGATTCTGATTCTGATTCTGTCA-CTAATAT
*
48412876 CTGATTCTGATTCTGATTCTGTTACTAATAT
1 CTGATTCTGATTCTGATTCTGTCACTAATAT
48412907 -TGATTCTGATTCTG
1 CTGATTCTGATTCTG
48412921 TTACTGATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
30 19 0.45
31 23 0.55
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTCTGTCACTAATAT
Found at i:48412901 original size:79 final size:79
Alignment explanation
Indices: 48412769--48412943 Score: 305
Period size: 79 Copynumber: 2.2 Consensus size: 79
48412759 TTGCATTCAC
*
48412769 ATTTTGATTCTGATCCTGTCACCTAATTCCGATTCTGATTCTGATTCTATTACTAATACTGATTC
1 ATTTTGATTCTGATTCTGTCACCTAATTCCGATTCTGATTCTGATTCTATTACTAATACTGATTC
48412834 TGATTCTGTTACTG
66 TGATTCTGTTACTG
* * *
48412848 ATTTTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTTTGATTCTGATTCTGTCACCTAATTCCGATTCTGATTCTGATTCTATTACTAATACTGATTC
48412913 TGATTCTGTTACTG
66 TGATTCTGTTACTG
*
48412927 ATTTTGATTTTGATTCT
1 ATTTTGATTCTGATTCT
48412944 CATTTTGGTT
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 91 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (79 bp):
ATTTTGATTCTGATTCTGTCACCTAATTCCGATTCTGATTCTGATTCTATTACTAATACTGATTC
TGATTCTGTTACTG
Found at i:48416795 original size:23 final size:23
Alignment explanation
Indices: 48416757--48416807 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
48416747 CTCCTGAGCT
48416757 GATG-AATAGTAAGCTCTAACAA
1 GATGAAATAGTAAGCTCTAACAA
* *
48416779 GATGAAATGGTAAGCTCTATCAA
1 GATGAAATAGTAAGCTCTAACAA
*
48416802 GCTGAA
1 GATGAA
48416808 CAATAAGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.24
Consensus pattern (23 bp):
GATGAAATAGTAAGCTCTAACAA
Found at i:48416821 original size:22 final size:22
Alignment explanation
Indices: 48416789--48416839 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
48416779 GATGAAATGG
48416789 TAAGCTCTATCAAGCTGAACAA
1 TAAGCTCTATCAAGCTGAACAA
* * *
48416811 TAAGCTTTATCGAGCTGAACAG
1 TAAGCTCTATCAAGCTGAACAA
48416833 TAAGCTC
1 TAAGCTC
48416840 ATACGTGCTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (22 bp):
TAAGCTCTATCAAGCTGAACAA
Found at i:48416849 original size:22 final size:22
Alignment explanation
Indices: 48416789--48416851 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
48416779 GATGAAATGG
* *
48416789 TAAGCTCTATCAAGCTGAACAA
1 TAAGCTATATCGAGCTGAACAA
* *
48416811 TAAGCTTTATCGAGCTGAACAG
1 TAAGCTATATCGAGCTGAACAA
*
48416833 TAAGCTCATA-CGTGCTGAA
1 TAAGCT-ATATCGAGCTGAA
48416852 ATGGTAAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 33 0.94
23 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (22 bp):
TAAGCTATATCGAGCTGAACAA
Found at i:48423101 original size:21 final size:21
Alignment explanation
Indices: 48423062--48423101 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
48423052 GGACTAGATC
* *
48423062 TGTGAACAGGTCGTATGCCCG
1 TGTGAACAAGTCATATGCCCG
*
48423083 TGTGAACAAGTCATGTGCC
1 TGTGAACAAGTCATATGCC
48423102 TCACATAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (21 bp):
TGTGAACAAGTCATATGCCCG
Found at i:48425219 original size:25 final size:25
Alignment explanation
Indices: 48425114--48425281 Score: 229
Period size: 25 Copynumber: 6.8 Consensus size: 25
48425104 CTCTACCATT
*
48425114 TAACTGGAGGCCT-AGCCTCTTT-TAA
1 TAACTGG-GGCATAAGCC-CTTTATAA
*
48425139 TAACTAGGGCA-AAGCCCTTT-TAA
1 TAACTGGGGCATAAGCCCTTTATAA
48425162 TAACTGGGGCATAAGCCCTTT-TAA
1 TAACTGGGGCATAAGCCCTTTATAA
*
48425186 TAACTGGGGCATAAGCCCTTTATTA
1 TAACTGGGGCATAAGCCCTTTATAA
*
48425211 TAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTTATAA
* *
48425236 TAACTAGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTTATAA
48425261 TAACTGGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTT
48425282 TACACTTCCT
Statistics
Matches: 133, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
23 17 0.13
24 40 0.30
25 76 0.57
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
TAACTGGGGCATAAGCCCTTTATAA
Found at i:48425354 original size:9 final size:9
Alignment explanation
Indices: 48425340--48425396 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
48425330 ATATCATGTG
48425340 CATATCATA
1 CATATCATA
48425349 CATATCATA
1 CATATCATA
48425358 TGCATATCATA
1 --CATATCATA
* *
48425369 CATGTCATGTG
1 CATATCA--TA
48425380 CATATCATA
1 CATATCATA
*
48425389 CATGTCAT
1 CATATCAT
48425397 GTTTATCAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 23 0.59
11 16 0.41
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:48425355 original size:20 final size:20
Alignment explanation
Indices: 48425330--48425398 Score: 111
Period size: 20 Copynumber: 3.5 Consensus size: 20
48425320 ATTTATGAAT
48425330 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
48425350 ATATCATATGCATATCATAC
1 ATATCATGTGCATATCATAC
*
48425370 ATGTCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
48425390 ATGTCATGT
1 ATATCATGT
48425399 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:48431671 original size:29 final size:29
Alignment explanation
Indices: 48431638--48431702 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
48431628 GTGACGAGAT
48431638 TGGCACTAAGTGTGCATGATGGAAATATA
1 TGGCACTAAGTGTGCATGATGGAAATATA
*
48431667 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGATGGAAATATA
*
48431696 CGGCACT
1 TGGCACT
48431703 GGTGTGCGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGATGGAAATATA
Found at i:48439465 original size:13 final size:13
Alignment explanation
Indices: 48439447--48439471 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48439437 TAATGGTATA
48439447 TTGAATCCATGAT
1 TTGAATCCATGAT
48439460 TTGAATCCATGA
1 TTGAATCCATGA
48439472 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:48441033 original size:48 final size:48
Alignment explanation
Indices: 48440974--48441482 Score: 966
Period size: 48 Copynumber: 10.6 Consensus size: 48
48440964 AAAGTGTAAT
48440974 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
48441022 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48441070 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48441118 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48441166 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG-TATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48441213 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
48441261 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48441309 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48441357 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
48441405 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48441453 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
48441483 TGTTGTAACA
Statistics
Matches: 452, Mismatches: 8, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 0.10
48 405 0.90
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:48441344 original size:239 final size:240
Alignment explanation
Indices: 48440974--48441482 Score: 984
Period size: 239 Copynumber: 2.1 Consensus size: 240
48440964 AAAGTGTAAT
48440974 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
48441039 TGGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
66 TGGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
48441104 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATAT
131 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATAT
* *
48441169 GTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG-TATGTA
196 GTGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATGAA
48441213 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
48441278 TGGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
66 TGGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
48441343 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATAT
131 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATAT
*
48441408 GTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
196 GTGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATGAA
48441453 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
48441483 TGTTGTAACA
Statistics
Matches: 266, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
239 231 0.87
240 35 0.13
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (240 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATAT
GTGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATGAA
Found at i:48441568 original size:37 final size:37
Alignment explanation
Indices: 48441527--48441652 Score: 198
Period size: 37 Copynumber: 3.3 Consensus size: 37
48441517 GGAAATATAT
*
48441527 TCCGGGTAAGACCCGATGACTACTTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48441564 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAG---ATTATG
*
48441604 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48441641 TCCTGGTAAGAC
1 TCCGGGTAAGAC
48441653 TTCGTAATAA
Statistics
Matches: 83, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
37 47 0.57
40 36 0.43
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48441613 original size:40 final size:40
Alignment explanation
Indices: 48441527--48441639 Score: 187
Period size: 40 Copynumber: 2.9 Consensus size: 40
48441517 GGAAATATAT
*
48441527 TCCGGGTAAGACCCGATGACTACTTGTGGAG---ATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTATG
48441564 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTATG
*
48441604 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
48441640 GTCCTGGTAA
Statistics
Matches: 71, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
37 30 0.42
40 41 0.58
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (40 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTATG
Found at i:48443615 original size:40 final size:40
Alignment explanation
Indices: 48443569--48443910 Score: 363
Period size: 40 Copynumber: 8.6 Consensus size: 40
48443559 TGAATGATAC
* ** *
48443569 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATGTAT
** * * * *
48443609 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* ** * * *
48443649 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
48443689 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
48443728 CCGGACTAAGTTCCGAAGAGCAATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGTGATGTAT
* *
48443769 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
48443809 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
48443849 CTGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
48443889 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
48443911 ATCATGCTGG
Statistics
Matches: 271, Mismatches: 22, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
39 24 0.09
40 202 0.75
41 45 0.17
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:48443829 original size:121 final size:119
Alignment explanation
Indices: 48443686--48443910 Score: 378
Period size: 121 Copynumber: 1.9 Consensus size: 119
48443676 CTTGTGGTTA
48443686 TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCAA
1 TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGC-A
* * *
48443751 TTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
65 TTCGTGCTAGTGATGCATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
48443806 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCTGGACTAAGTTCCGAAGAGCA
1 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
* *
48443871 TTCGTGCTAGTGATGCATCCGGGCTAGGTCCCGAAGAGCA
65 TTCGTGCTAGTGATGCATCCGGACTAAGTCCCGAAGAGCA
48443911 ATCATGCTGG
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
120 43 0.44
121 55 0.56
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCAT
TCGTGCTAGTGATGCATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:48446073 original size:13 final size:13
Alignment explanation
Indices: 48446055--48446079 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48446045 TAATGGTATA
48446055 TTGAATCCATGAT
1 TTGAATCCATGAT
48446068 TTGAATCCATGA
1 TTGAATCCATGA
48446080 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:48447647 original size:48 final size:48
Alignment explanation
Indices: 48447588--48448082 Score: 664
Period size: 48 Copynumber: 10.6 Consensus size: 48
48447578 AAAGTGTAAT
48447588 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
48447636 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTATGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48447684 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48447732 TATGTGGTAAAGCC-AATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
48447779 TATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATGTGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48447827 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* ** * * *
48447875 TATGTGGTAAAGCCGAAT-AC--ATGTG-TGT-TATGTAT-ATGTGGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATAT-GTA
** * * * * * *
48447918 TA-GCCG-AATGGCTAAT-G-TGAA-AT-ACAT--GTGTGT--TATGTA
1 TATGTGGTAAAGCCGAATGGCT-AATGTGAAATACATGTGTGATATGTA
48447957 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
48448005 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48448053 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
48448083 TGTTGTAACA
Statistics
Matches: 393, Mismatches: 38, Indels: 32
0.85 0.08 0.07
Matches are distributed among these distances:
39 5 0.01
40 4 0.01
41 18 0.05
42 10 0.03
43 13 0.03
44 4 0.01
45 5 0.01
46 5 0.01
47 48 0.12
48 281 0.72
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:48447797 original size:143 final size:143
Alignment explanation
Indices: 48447588--48448082 Score: 800
Period size: 143 Copynumber: 3.5 Consensus size: 143
48447578 AAAGTGTAAT
48447588 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCC-AATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
*
48447653 TGGCTAATGTGAAATACATGTATGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
65 TGGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
48447718 ATGTGTGATATGTA
130 ATGTGTGATATGTA
48447732 TATGTGGTAAAGCCAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAAT
1 TATGTGGTAAAGCCAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAAT
* * *
48447797 GGATAATGTGAAATACATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
66 GGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
48447862 TGTGTGATATGTA
131 TGTGTGATATGTA
* *
48447875 TATGTGGTAAAG-C-----C------G-AATACATGTGTGTTATGTATATGTGGTATAGCCGAAT
1 TATGTGGTAAAGCCAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAAT
48447927 GGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
66 GGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
48447992 TGTGTGATATGTA
131 TGTGTGATATGTA
* * *
48448005 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGC-CAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
48448070 TGGCTAATGTGAA
65 TGGCTAATGTGAA
48448083 TGTTGTAACA
Statistics
Matches: 323, Mismatches: 14, Indels: 28
0.88 0.04 0.08
Matches are distributed among these distances:
130 122 0.38
131 1 0.00
137 2 0.01
142 1 0.00
143 138 0.43
144 59 0.18
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (143 bp):
TATGTGGTAAAGCCAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
TGTGTGATATGTA
Found at i:48447894 original size:34 final size:34
Alignment explanation
Indices: 48447856--48447926 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
48447846 GCTAATGTGA
48447856 AATACATGTGTGATATGTATATGTGGTAAAGCCG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCG
* *
48447890 AATACATGTGTGTTATGTATATGTGGTATAGCCG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCG
48447924 AAT
1 AAT
48447927 GGCTAATGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.35
Consensus pattern (34 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCG
Found at i:48447912 original size:130 final size:130
Alignment explanation
Indices: 48447760--48448022 Score: 472
Period size: 130 Copynumber: 2.0 Consensus size: 130
48447750 GCTAATGTGA
*
48447760 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATGTG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATG
*
48447825 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
* * * *
48447890 AATACATGTGTGTTATGTATATGTGGTATAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATG
48447955 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
48448020 AAT
1 AAT
48448023 GGCTAATGTG
Statistics
Matches: 127, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
130 127 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.33
Consensus pattern (130 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
Found at i:48448011 original size:178 final size:177
Alignment explanation
Indices: 48447713--48448070 Score: 635
Period size: 178 Copynumber: 2.0 Consensus size: 177
48447703 GCTAATGTGA
48447713 AATACATGTGTGATATGTATATGTGGTAAAGCCAATGGCTAATGTGAAATACATGTGTGATATGT
1 AATACATGTGTGATATGTATATGTGGTAAAGCCAATGGCTAATGTGAAATACATGTGTGATATGT
* *
48447778 ATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATGTGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGA
*
48447843 ATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
131 ATGGCTAATGTGAAATACATGTGTGATATGAATATGTGGTAAAGCCG
* * *
48447890 AATACATGTGTGTTATGTATATGTGGTATAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCC-AATGGCTAATGTGAAATACATGTGTGATATG
*
48447955 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
65 TATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
*
48448020 AATGGCTAATGTGAAATATATGTGTGATATGAATATGTGGTAAAGCCG
130 AATGGCTAATGTGAAATACATGTGTGATATGAATATGTGGTAAAGCCG
48448068 AAT
1 AAT
48448071 GGCTAATGTG
Statistics
Matches: 172, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
177 31 0.18
178 141 0.82
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (177 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCAATGGCTAATGTGAAATACATGTGTGATATGT
ATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGA
ATGGCTAATGTGAAATACATGTGTGATATGAATATGTGGTAAAGCCG
Found at i:48448177 original size:37 final size:37
Alignment explanation
Indices: 48448127--48448249 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
48448117 GGAAATATAT
48448127 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48448164 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48448201 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48448238 TCCGGGTAAGAC
1 TCCGGGTAAGAC
48448250 TTCGTAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48455641 original size:45 final size:44
Alignment explanation
Indices: 48455571--48455711 Score: 158
Period size: 46 Copynumber: 3.1 Consensus size: 44
48455561 CACTATCTCT
* * * *
48455571 CACATATCCATGCCCATGCCATGTCCCAGACATGGTCTTACACTGA
1 CACATCTCCAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGG
* *
48455617 CACATCTCGCA-GTCGATGCATGTCCCAGACAATGTTTTACACTGG
1 CACATCTC-CAGGCCGATGCATGTCCCAGAC-ATGTCTTACACTGG
*
48455662 CTTACATCTCTAGGCCGATGCATGTCCCAGACATGTCTTACACTGG
1 C--ACATCTCCAGGCCGATGCATGTCCCAGACATGTCTTACACTGG
48455708 CACA
1 CACA
48455712 CAAATAACCT
Statistics
Matches: 82, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
44 3 0.04
45 23 0.28
46 29 0.35
47 27 0.33
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.26
Consensus pattern (44 bp):
CACATCTCCAGGCCGATGCATGTCCCAGACATGTCTTACACTGG
Found at i:48461489 original size:68 final size:66
Alignment explanation
Indices: 48461417--48461588 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
48461407 CATCATGTGT
* * * *
48461417 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
48461480 TGTAG
62 TGTAG
** * *
48461485 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
48461550 AG
65 AG
* * * *
48461552 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
48461589 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:48461522 original size:64 final size:64
Alignment explanation
Indices: 48461441--48461624 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
48461431 AGACATTATG
* * *
48461441 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
48461505 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
48461570 AA
63 AA
* * *
48461572 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
48461625 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:48465823 original size:68 final size:66
Alignment explanation
Indices: 48465751--48465922 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
48465741 CATCATGTGT
* * * *
48465751 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
48465814 TGTAG
62 TGTAG
** * *
48465819 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
48465884 AG
65 AG
* * * *
48465886 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
48465923 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:48465856 original size:64 final size:64
Alignment explanation
Indices: 48465775--48465958 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
48465765 AGACATTATG
* * *
48465775 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
48465839 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
48465904 AA
63 AA
* * *
48465906 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
48465959 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:48484339 original size:52 final size:50
Alignment explanation
Indices: 48484264--48484374 Score: 114
Period size: 50 Copynumber: 2.2 Consensus size: 50
48484254 TACTATTTCT
* ** ** *
48484264 AGGCTACTATGTGTTTCAAATGGTTTTAGGTCATGTGTGTAGCACTAAGTGC
1 AGGCTACTACGTGTACCAAATGG--TTAGGTCACATGTATAGCACTAAGTGC
* * * *
48484316 AGGCTACTACGTGTACCAGATGGTTAGGTCGCATGTATAGTATTAAGTGC
1 AGGCTACTACGTGTACCAAATGGTTAGGTCACATGTATAGCACTAAGTGC
48484366 AGGCTACTA
1 AGGCTACTA
48484375 TGCATACCCG
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
50 30 0.61
52 19 0.39
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (50 bp):
AGGCTACTACGTGTACCAAATGGTTAGGTCACATGTATAGCACTAAGTGC
Found at i:48484415 original size:51 final size:50
Alignment explanation
Indices: 48484299--48484415 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 50
48484289 TTAGGTCATG
* ** * * *
48484299 TGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATGCTTAGATCACA
* * * * *
48484349 TGTATAGTATTAAGTGCAGGCTACTATGCATACCCGATAGCTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGAT-GCTTAGATCACA
48484400 TGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTG
48484416 AAGGAAACTA
Statistics
Matches: 53, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
50 31 0.58
51 22 0.42
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATGCTTAGATCACA
Found at i:48486291 original size:26 final size:26
Alignment explanation
Indices: 48486255--48486307 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
48486245 TATAACTTAG
48486255 TGAATATATTGATCTGCTTGAATTGA
1 TGAATATATTGATCTGCTTGAATTGA
48486281 TGAATATATTGATCTGCTTGAATTGA
1 TGAATATATTGATCTGCTTGAATTGA
48486307 T
1 T
48486308 CTCTGTGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (26 bp):
TGAATATATTGATCTGCTTGAATTGA
Found at i:48493507 original size:45 final size:46
Alignment explanation
Indices: 48493344--48493518 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
48493334 TGGTTGAGCA
*
48493344 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
48493390 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
48493435 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
48493483 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48493519 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:48500933 original size:46 final size:46
Alignment explanation
Indices: 48500883--48501058 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
48500873 TGGTTGAGCA
48500883 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48500929 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
48500974 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48501022 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48501059 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48501044 original size:93 final size:93
Alignment explanation
Indices: 48500880--48501051 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
48500870 GGATGGTTGA
* *
48500880 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48500945 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
48500973 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48501038 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
48501052 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48508681 original size:27 final size:27
Alignment explanation
Indices: 48508519--48508806 Score: 190
Period size: 27 Copynumber: 10.7 Consensus size: 27
48508509 TTGGTAAATC
*
48508519 TACAAACCAAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
** * *
48508546 TGTAAACCAATGGTATTT--ATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
** *
48508571 TTTAAAGTCAAGGGTATTTCTATAATTT
1 TACAAA-TCAAGGGTATTTCGATAATTT
* *
48508599 TCCAAATTAAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * * * *
48508626 TCCAAATTAAAGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
*
48508653 TACAAATCGAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* ** ** * * *
48508680 TATAGGTTGAGAGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* **
48508707 TATAGGTCAAGGGTATTTC-AGTAATTT
1 TACAAATCAAGGGTATTTCGA-TAATTT
* * *
48508734 TACAAGTCGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * *
48508761 CACAAATC-AGGAGTATTTTGGTAATTT
1 TACAAATCAAGG-GTATTTCGATAATTT
**
48508788 TGTAAA-CTAAGGGTATTTC
1 TACAAATC-AAGGGTATTTC
48508807 AGTAATTCTA
Statistics
Matches: 211, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
25 12 0.06
26 14 0.07
27 171 0.81
28 14 0.07
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCGATAATTT
Found at i:48508775 original size:81 final size:81
Alignment explanation
Indices: 48508531--48508813 Score: 227
Period size: 81 Copynumber: 3.5 Consensus size: 81
48508521 CAAACCAAGG
* * * * * ** * *
48508531 GTATTTCGATAATTTTGTAAACCAATGGTATTT-A-TAATTTTTTAAAGTCAAGGGTATTTCTAT
1 GTATTTTGGTAATTTTATAAACTAAGGGTATTTCAGTAATTTTACAAA-TCGAGGGTATTTCGAT
*
48508594 AATTTTC-CAAATTA-AGG
65 AA-TTTCACAAA-TAGAGA
* * ** * * **
48508611 GTATTTCGATAATTTTCCAAATTAAAGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATA
1 GTATTTTGGTAATTTTATAAACTAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATA
* * ** *
48508676 ATTTTATAGGTTGAGA
66 ATTTCACAAATAGAGA
** * *
48508692 GTATTTTGGTAATTTTAT-AGGTCAAGGGTATTTCAGTAATTTTACAAGTCGAGGGTATTTCGGT
1 GTATTTTGGTAATTTTATAAACT-AAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
48508756 AATTTCACAAATCAG-GA
65 AATTTCACAAAT-AGAGA
*
48508773 GTATTTTGGTAATTTTGTAAACTAAGGGTATTTCAGTAATT
1 GTATTTTGGTAATTTTATAAACTAAGGGTATTTCAGTAATT
48508814 CTACCCTACA
Statistics
Matches: 161, Mismatches: 35, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
80 34 0.21
81 114 0.71
82 13 0.08
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (81 bp):
GTATTTTGGTAATTTTATAAACTAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATA
ATTTCACAAATAGAGA
Found at i:48508878 original size:27 final size:27
Alignment explanation
Indices: 48508802--48508866 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
48508792 AACTAAGGGT
48508802 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
48508829 ATTTTAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
48508856 ATTTCAGTAAT
1 ATTTCAGTAAT
48508867 ATTAGCCTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:48512330 original size:15 final size:15
Alignment explanation
Indices: 48512310--48512388 Score: 90
Period size: 15 Copynumber: 5.3 Consensus size: 15
48512300 GTATCTTGGG
48512310 TTCTTTATTCTGGAT
1 TTCTTTATTCTGGAT
*
48512325 TTCTTTATTCTGGGT
1 TTCTTTATTCTGGAT
*
48512340 TTCTTTATTCTGGGT
1 TTCTTTATTCTGGAT
* *
48512355 TTCTCTA-TCTTAGAT
1 TTCTTTATTC-TGGAT
*
48512370 TTCTTTATTC-GGTT
1 TTCTTTATTCTGGAT
48512384 TTCTT
1 TTCTT
48512389 GTTATCTTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
14 9 0.16
15 44 0.80
16 2 0.04
ACGTcount: A:0.10, C:0.15, G:0.14, T:0.61
Consensus pattern (15 bp):
TTCTTTATTCTGGAT
Found at i:48512345 original size:30 final size:30
Alignment explanation
Indices: 48512301--48512388 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
48512291 CATAGTATCG
48512301 TATCTTGGG-TTCTTTATTCTGGATTTCTT
1 TATCTTGGGTTTCTTTATTCTGGATTTCTT
* *
48512330 TAT-TCTGGGTTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGGTTTCTTTATTCTGGATTTCTT
* * *
48512360 TATCTTAGATTTCTTTATTC-GGTTTTCTT
1 TATCTTGGGTTTCTTTATTCTGGATTTCTT
48512389 GTTATCTTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
28 1 0.02
29 14 0.28
30 34 0.68
31 1 0.02
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.59
Consensus pattern (30 bp):
TATCTTGGGTTTCTTTATTCTGGATTTCTT
Found at i:48513161 original size:19 final size:19
Alignment explanation
Indices: 48513137--48513177 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
48513127 TTAAATTGTT
*
48513137 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
48513156 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
48513175 TTA
1 TTA
48513178 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:48513585 original size:39 final size:39
Alignment explanation
Indices: 48513531--48513665 Score: 225
Period size: 39 Copynumber: 3.5 Consensus size: 39
48513521 TTATATGATT
48513531 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
48513570 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* * *
48513609 TGGTGTTATATCCAGGCTAACCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
48513648 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
48513666 TAAAGTCCCG
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:48515591 original size:39 final size:40
Alignment explanation
Indices: 48515490--48515745 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
48515480 CAAATGATAA
* * * * *
48515490 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA-T
**
48515530 TAGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
*
48515570 TCGGGCTAAGT-CCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
*
48515609 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
48515649 CCGGGCT-AGTCCCGAAGGCATTT-ATGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTATAT
48515688 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATAT
*
48515728 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48515746 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 92 0.46
40 104 0.53
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
Found at i:48515623 original size:79 final size:80
Alignment explanation
Indices: 48515491--48515745 Score: 342
Period size: 79 Copynumber: 3.2 Consensus size: 80
48515481 AAATGATAAC
* * * * * **
48515491 CGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATTTAGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTG
48515555 AGCGAGTTACTATATT
65 AGCGAGTTACTATATT
48515571 CGGGCTAAGT-CCGAAGGCATTTGA-GCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTT-ATGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
48515634 TGCGAGTTACTATATC
65 AGCGAGTTACTATATT
48515650 CGGGCT-AGTCCCGAAGGCATTTATGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 CGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGA
48515714 GCGAG-TAGCTATA-T
66 GCGAGTTA-CTATATT
* *
48515728 CCGGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
48515746 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
78 11 0.07
79 135 0.87
80 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTTACTATATT
Found at i:48522952 original size:40 final size:40
Alignment explanation
Indices: 48522895--48523152 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
48522885 CGAATGATAA
* * * *
48522895 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
48522935 CAGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48522975 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48523015 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48523055 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48523095 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
48523135 CC-GGCTAAATCCCAAAGG
1 CCGGGCTAAGTCCCGAAGG
48523153 TACTTCGTTT
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 16 0.08
40 184 0.92
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48527682 original size:19 final size:19
Alignment explanation
Indices: 48527658--48527694 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
48527648 AATTGTTTTA
*
48527658 TAATATGAAATGAATATTG
1 TAATATGAAAGGAATATTG
*
48527677 TAATATTAAAGGAATATT
1 TAATATGAAAGGAATATT
48527695 AATATTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (19 bp):
TAATATGAAAGGAATATTG
Found at i:48528220 original size:39 final size:39
Alignment explanation
Indices: 48528047--48528213 Score: 271
Period size: 39 Copynumber: 4.3 Consensus size: 39
48528037 TTATATGATT
* *
48528047 TGGTGTTATATCCAGGCTAAGCCCCAAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
48528086 TGGTGTTATATCTGGGCTAAGCCCCGAAGGCATTCGTCC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
48528125 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCTTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
48528164 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
48528203 TGGTATTATAT
1 TGGTGTTATAT
48528214 TTGGGCTTAA
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:48533033 original size:29 final size:28
Alignment explanation
Indices: 48533001--48533103 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
48532991 GTGACGAGAT
* *
48533001 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
48533030 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
48533059 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
48533088 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48533104 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:48541109 original size:96 final size:96
Alignment explanation
Indices: 48540945--48541136 Score: 384
Period size: 96 Copynumber: 2.0 Consensus size: 96
48540935 GGTATGTTTG
48540945 AGGTTGTGTCATGAGATTCATGCATGTTTTAGTTGCTAACTTGATGTTCATGTTAGCCATGGTTC
1 AGGTTGTGTCATGAGATTCATGCATGTTTTAGTTGCTAACTTGATGTTCATGTTAGCCATGGTTC
48541010 AAATCCTTGTTATGCCATGGAAATGGTATTT
66 AAATCCTTGTTATGCCATGGAAATGGTATTT
48541041 AGGTTGTGTCATGAGATTCATGCATGTTTTAGTTGCTAACTTGATGTTCATGTTAGCCATGGTTC
1 AGGTTGTGTCATGAGATTCATGCATGTTTTAGTTGCTAACTTGATGTTCATGTTAGCCATGGTTC
48541106 AAATCCTTGTTATGCCATGGAAATGGTATTT
66 AAATCCTTGTTATGCCATGGAAATGGTATTT
48541137 GGCCAAGGTT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 96 1.00
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.41
Consensus pattern (96 bp):
AGGTTGTGTCATGAGATTCATGCATGTTTTAGTTGCTAACTTGATGTTCATGTTAGCCATGGTTC
AAATCCTTGTTATGCCATGGAAATGGTATTT
Found at i:48542328 original size:40 final size:38
Alignment explanation
Indices: 48542169--48542361 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 38
48542159 TGTGTATGAA
* *
48542169 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAT
*
48542207 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-AT
* *
48542246 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGCGAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-AT
*
48542285 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA-T
* * * * *
48542325 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
48542362 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 36 0.26
39 61 0.44
40 41 0.30
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (38 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAT
Found at i:48542349 original size:79 final size:78
Alignment explanation
Indices: 48542186--48542362 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 78
48542176 ATTGTGATAT
48542186 CCGGGCTAAGCCCGAAGGC-AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCGAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
* *
48542250 CGAGATATGATAT
66 CGAGATATCATAA
* * * *
48542263 CCGGGCTAAGCCCGAAGGCGATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCGAATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
* *
48542328 GCGGGTTATCATAA
65 GCGAGATATCATAA
*
48542342 CCGGGCTATGTCCCGAAGGCG
1 CCGGGCTAAG-CCCGAAGGCG
48542363 TTTGAACGAG
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
77 19 0.22
78 26 0.30
79 33 0.38
80 10 0.11
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCGAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGATATCATAA
Found at i:48542388 original size:79 final size:78
Alignment explanation
Indices: 48542186--48542399 Score: 220
Period size: 79 Copynumber: 2.7 Consensus size: 78
48542176 ATTGTGATAT
* * * *
48542186 CCGGGCTAAGCCCGAAGGCAATGTG--CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCGAT-TGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGT
* *
48542249 GCGAGATATGATAT
65 GCGAGATATCATAA
** * *
48542263 CCGGGCTAAGCCCGAAGGCGATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
* *
48542328 GCGGGTTATCATAA
65 GCGAGATATCATAA
* * *
48542342 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCGATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
48542400 TATGTGATTT
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
76 2 0.02
77 21 0.18
78 22 0.19
79 46 0.39
80 25 0.21
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGATATCATAA
Found at i:48548877 original size:40 final size:39
Alignment explanation
Indices: 48548719--48548879 Score: 254
Period size: 38 Copynumber: 4.2 Consensus size: 39
48548709 TGTGTATGAA
*
48548719 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
48548757 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
48548796 TGTGCGAG-TATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
48548834 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
48548874 TGTGCG
1 TGTGCG
48548880 GGTTACCATA
Statistics
Matches: 115, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
38 75 0.65
39 23 0.20
40 17 0.15
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:48548895 original size:40 final size:39
Alignment explanation
Indices: 48548719--48548910 Score: 244
Period size: 38 Copynumber: 4.9 Consensus size: 39
48548709 TGTGTATGAA
* *
48548719 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
48548757 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
48548796 TGTGCGAG-TATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
48548834 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
48548874 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
48548911 GTTTGAACGA
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
38 75 0.54
39 23 0.17
40 41 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:48548931 original size:80 final size:77
Alignment explanation
Indices: 48548736--48548948 Score: 209
Period size: 79 Copynumber: 2.7 Consensus size: 77
48548726 ATTGTGATAT
* * *
48548736 CCGGGCTAAGCCCGAAGGCAATGTG--CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCAAT-TGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGT
** *
48548799 GCGAGTATGATAT
65 GCGAGTACCATAA
** * *
48548812 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
*
48548877 GCGGGTTACCATAA
65 GCGAG-TACCATAA
* ** *
48548891 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
48548949 TATGTGATTT
Statistics
Matches: 116, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
75 2 0.02
76 22 0.19
77 21 0.18
78 19 0.16
79 27 0.23
80 24 0.21
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGTACCATAA
Found at i:48550652 original size:29 final size:29
Alignment explanation
Indices: 48550571--48550652 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
48550561 ATTGTAATGT
* * *
48550571 ATGGCACTAAGTGTGCGAGTTTGGACTAT
1 ATGGCACTAAGTGTGCGAGATTGAACTAC
* * *
48550600 ATGGCACTATGTGTGCGGGCTTGAA-TCAC
1 ATGGCACTAAGTGTGCGAGATTGAACT-AC
*
48550629 ATGGCACTAAGTGTGCGTGATTGA
1 ATGGCACTAAGTGTGCGAGATTGA
48550653 GTATTAAGCA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 1 0.02
29 43 0.98
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.29
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGATTGAACTAC
Found at i:48552670 original size:43 final size:42
Alignment explanation
Indices: 48552622--48552744 Score: 142
Period size: 42 Copynumber: 2.9 Consensus size: 42
48552612 AGACATCGTG
48552622 TAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTTACATA
1 TAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTT-CATA
* ** * * *
48552665 TAAGACCATGTTTGGGACATGGGCATCGTATCT-A-ATTTCGTG
1 TAAGACCGTGTTTGGGACACAGGCCTCG-AT-TGAGATTTCATA
*
48552707 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTT
1 TAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTT
48552745 TTGTGTAAGA
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
40 1 0.02
41 3 0.05
42 29 0.45
43 28 0.43
44 3 0.05
45 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (42 bp):
TAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTTCATA
Found at i:48552755 original size:43 final size:43
Alignment explanation
Indices: 48552617--48552768 Score: 157
Period size: 43 Copynumber: 3.6 Consensus size: 43
48552607 GTCTGAGACA
*
48552617 TCGTGTAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTT
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTT
* * * * * ** *
48552660 ACATATAAGACCATGTTTGGGACATGGGCATCGTATCT-A-A-TT
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCG-AT-TGAGATTT
48552702 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTT
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTT
* * *
48552745 TTGTGTAAGACCCTGTCTGAGACA
1 TCGTGTAAGACCGTGTCTGGGACA
48552769 GAGACATCGA
Statistics
Matches: 86, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 28 0.33
43 50 0.58
44 3 0.03
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTT
Found at i:48552777 original size:85 final size:86
Alignment explanation
Indices: 48552617--48552799 Score: 228
Period size: 85 Copynumber: 2.1 Consensus size: 86
48552607 GTCTGAGACA
* * *
48552617 TCGTGTAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTTTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGAGA
*
48552682 CATGGGCATCG-TATCT-AATT
66 CATGGACATCGATAT-TGAATT
*** * *
48552702 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTTTGTGTAAGACCCTGTCTGAGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGAGA
48552767 CA-GAGACATCGATATTGAATT
66 CATG-GACATCGATATTGAATT
* *
48552788 ACCTGTAAGACC
1 TCGTGTAAGACC
48552800 ACGTCCGGGA
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
84 1 0.01
85 66 0.79
86 17 0.20
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (86 bp):
TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGAGA
CATGGACATCGATATTGAATT
Found at i:48556936 original size:40 final size:40
Alignment explanation
Indices: 48556828--48556937 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
48556818 ATTGAATGAT
* * * * *
48556828 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
48556868 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
48556908 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
48556938 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:48556952 original size:40 final size:39
Alignment explanation
Indices: 48556828--48556977 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
48556818 ATTGAATGAT
* * * * * * *
48556828 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
48556868 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
48556908 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
48556948 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
48556978 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:48566862 original size:30 final size:30
Alignment explanation
Indices: 48566828--48566888 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
48566818 TCCTTAACTC
48566828 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
48566858 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
48566888 A
1 A
48566889 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:48576944 original size:93 final size:93
Alignment explanation
Indices: 48576832--48577002 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
48576822 GCCCATAAGT
* *
48576832 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48576897 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
48576925 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48576990 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48577003 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:48577018 original size:46 final size:46
Alignment explanation
Indices: 48576824--48577004 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
48576814 TGTAACCCGC
* * *
48576824 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
48576870 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
48576920 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
48576963 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
48577005 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:48579418 original size:30 final size:30
Alignment explanation
Indices: 48579374--48579462 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
48579364 CAAAGATAAC
48579374 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
48579403 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
48579433 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
48579463 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:48579422 original size:15 final size:15
Alignment explanation
Indices: 48579374--48579453 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
48579364 CAAAGATAAC
*
48579374 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
48579388 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
48579403 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
48579418 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
48579433 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
48579448 AAGAAA
1 AAGAAA
48579454 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:48579462 original size:15 final size:15
Alignment explanation
Indices: 48579385--48579462 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
48579375 AGAAAACCGA
48579385 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
48579400 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
48579414 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
48579429 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
48579445 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
48579460 ATA
1 ATA
48579463 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:48582520 original size:93 final size:93
Alignment explanation
Indices: 48582408--48582578 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
48582398 GCCCATAAGT
* *
48582408 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48582473 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
48582501 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48582566 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48582579 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:48582594 original size:46 final size:46
Alignment explanation
Indices: 48582400--48582580 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
48582390 TGTAACCCGC
* * *
48582400 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
48582446 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
48582496 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
48582539 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
48582581 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:48590417 original size:24 final size:24
Alignment explanation
Indices: 48590374--48590575 Score: 185
Period size: 24 Copynumber: 8.0 Consensus size: 24
48590364 TGACATTGTG
***
48590374 CTAAGTGAAATAAAAGCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
48590398 C-ATAGTGAAATAAGTCCATGGCAATGT
1 CTA-AGTGAAATAAGTCCATGGC-A--T
* *
48590425 GCTAAGTGAAATAAGACAATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
48590450 CTCAGTGAAATAAGTCCATGGCAAT
1 CTAAGTGAAATAAGTCCATGGC-AT
*
48590475 GCGCTAAGTGAAATAAGACCATGGCAT
1 ---CTAAGTGAAATAAGTCCATGGCAT
*
48590502 CTAAGTGAAATAAGTCCACGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
*
48590529 GCTAAGTGAAAT--GTCCATGGAAT
1 -CTAAGTGAAATAAGTCCATGGCAT
48590552 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
48590576 GGTGCTAAGT
Statistics
Matches: 147, Mismatches: 15, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
22 11 0.07
23 2 0.01
24 66 0.45
25 6 0.04
26 7 0.05
27 5 0.03
28 49 0.33
29 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:48590433 original size:52 final size:52
Alignment explanation
Indices: 48590370--48590587 Score: 318
Period size: 52 Copynumber: 4.2 Consensus size: 52
48590360 GATATGACAT
* *
48590370 TGTGCTAAGTGAAATAAAAGCATGGCATC-ATAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTA-AGTGAAATAAGTCCATGGCAA
* *
48590422 TGTGCTAAGTGAAATAAGACAATGGCATCTCAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
48590474 TGCGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCACGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
48590526 TGTGCTAAGTGAAAT--GTCCATGGAATCTAAGTGAAATAAGTCCATGGC-A
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
48590575 TGGTGCTAAGTGA
1 T-GTGCTAAGTGA
48590588 GTAATTTCCC
Statistics
Matches: 152, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
49 2 0.01
50 41 0.27
52 109 0.72
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.23
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:48590446 original size:28 final size:28
Alignment explanation
Indices: 48590401--48590587 Score: 206
Period size: 28 Copynumber: 7.2 Consensus size: 28
48590391 ATGGCATCAT
48590401 AGTGAAATAAGTCCATGGCAATGTGCTA
1 AGTGAAATAAGTCCATGGCAATGTGCTA
* * *
48590429 AGTGAAATAAGACAATGGC-A--T-CTC
1 AGTGAAATAAGTCCATGGCAATGTGCTA
*
48590453 AGTGAAATAAGTCCATGGCAATGCGCTA
1 AGTGAAATAAGTCCATGGCAATGTGCTA
*
48590481 AGTGAAATAAGACCATGGC-A--T-CTA
1 AGTGAAATAAGTCCATGGCAATGTGCTA
*
48590505 AGTGAAATAAGTCCACGGCAATGTGCTA
1 AGTGAAATAAGTCCATGGCAATGTGCTA
48590533 AGTGAAAT--GTCCATGG-AA--T-CTA
1 AGTGAAATAAGTCCATGGCAATGTGCTA
48590555 AGTGAAATAAGTCCATGGC-ATGGTGCTA
1 AGTGAAATAAGTCCATGGCAAT-GTGCTA
48590583 AGTGA
1 AGTGA
48590588 GTAATTTCCC
Statistics
Matches: 132, Mismatches: 12, Indels: 30
0.76 0.07 0.17
Matches are distributed among these distances:
22 11 0.08
23 1 0.01
24 48 0.36
25 5 0.04
26 7 0.05
27 4 0.03
28 56 0.42
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (28 bp):
AGTGAAATAAGTCCATGGCAATGTGCTA
Found at i:48598550 original size:43 final size:42
Alignment explanation
Indices: 48598462--48598572 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 42
48598452 TGAGTTTACG
** *
48598462 TGTAAGACCATATCT-GGATATGGCATCAATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATGGCATCAATATGAGATCCCA
* * * *
48598503 TGTAAGACCATAGCTAGGCTATTGGCATCGATTTGAGATCCCA
1 TGTAAGACCATATCTAGGATA-TGGCATCAATATGAGATCCCA
*
48598546 TGTAAGACTATATCTAGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
48598573 TGGTATGGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 14 0.24
42 10 0.17
43 34 0.59
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCAATATGAGATCCCA
Found at i:48601760 original size:15 final size:15
Alignment explanation
Indices: 48601721--48601791 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
48601711 GTATCTTGGG
*
48601721 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
48601736 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
48601751 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
48601766 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
48601781 TTTCTTTATTC
1 TTTCTTTATTC
48601792 GTTTTCTTGT
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
14 2 0.04
15 41 0.91
16 2 0.04
ACGTcount: A:0.11, C:0.20, G:0.13, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:48601790 original size:30 final size:31
Alignment explanation
Indices: 48601712--48601791 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
48601702 CATAGTATCG
* *
48601712 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCCTGGATCTCTC
* *
48601742 TAT-TCTGGATTTCTTTATTCC-GGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCTGGATCTCTC
48601772 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
48601792 GTTTTCTTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 1 0.02
30 38 0.88
31 4 0.09
ACGTcount: A:0.11, C:0.19, G:0.15, T:0.55
Consensus pattern (31 bp):
TATCTTGGATTTCTTTATTCCTGGATCTCTC
Found at i:48604341 original size:46 final size:46
Alignment explanation
Indices: 48604177--48604350 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
48604167 GGTTGAGCAT
*
48604177 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-GCG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCA
* * * *
48604222 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GCA
48604268 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC-
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGCA
*
48604315 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48604351 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
42 6 0.05
44 2 0.02
45 27 0.25
46 37 0.34
47 27 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCA
Found at i:48606345 original size:15 final size:13
Alignment explanation
Indices: 48606312--48606346 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
48606302 CTAGGGACAT
48606312 GGGTGTGTGCCCA
1 GGGTGTGTGCCCA
48606325 GGGTGTGTGCCCA
1 GGGTGTGTGCCCA
*
48606338 GGGCGTGTG
1 GGGTGTGTG
48606347 AAGTCTGCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.20, G:0.51, T:0.23
Consensus pattern (13 bp):
GGGTGTGTGCCCA
Found at i:48607308 original size:7 final size:7
Alignment explanation
Indices: 48607269--48607293 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
48607259 CACATTTCTA
48607269 CTCATCC
1 CTCATCC
48607276 CTCATCC
1 CTCATCC
48607283 CTCATCC
1 CTCATCC
48607290 CTCA
1 CTCA
48607294 ATACTCATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.56, G:0.00, T:0.28
Consensus pattern (7 bp):
CTCATCC
Found at i:48609664 original size:46 final size:45
Alignment explanation
Indices: 48609614--48609736 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 45
48609604 AACGAGTGCT
48609614 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACATAAATC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAG--ATAAATC
* ***
48609660 AGTGTAAGACATGTCTGGGACATGTATCGG-CTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATAAATC
*
48609704 AGTGTAAGACTATGTCTGGGACACAGCATCGGC
1 AGTGTAAGAC-ATGTCTGGGACA-TGCATCGGC
48609737 ACAGATATGC
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 14 0.21
45 14 0.21
46 39 0.58
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATAAATC
Found at i:48611152 original size:58 final size:58
Alignment explanation
Indices: 48611074--48611183 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 58
48611064 GCCCATTTCA
* *
48611074 TTCAAATGGCCAATCAGGCCCAATTCACATTCATGTGGCCCATCAGGCCCAATTCATC
1 TTCAAATGGCCAATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTCATC
* * * * * *
48611132 TTCAAATGGCCTATTAGGCCCAAATCACCTTTATATGGCCCGTTAGGCCCAA
1 TTCAAATGGCCAATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAA
48611184 ATCACCTTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 44 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (58 bp):
TTCAAATGGCCAATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTCATC
Found at i:48611189 original size:29 final size:29
Alignment explanation
Indices: 48611074--48611195 Score: 120
Period size: 29 Copynumber: 4.2 Consensus size: 29
48611064 GCCCATTTCA
* * * * *
48611074 TTCAAATGGCCAATCAGGCCCAATTCACA
1 TTCATATGGCCCATTAGGCCCAAATCACC
* * * *
48611103 TTCATGTGGCCCATCAGGCCCAATTCATC
1 TTCATATGGCCCATTAGGCCCAAATCACC
* *
48611132 TTCAAATGGCCTATTAGGCCCAAATCACC
1 TTCATATGGCCCATTAGGCCCAAATCACC
* *
48611161 TTTATATGGCCCGTTAGGCCCAAATCACC
1 TTCATATGGCCCATTAGGCCCAAATCACC
48611190 TT-ATAT
1 TTCATAT
48611196 TCATGCTCAC
Statistics
Matches: 78, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
28 4 0.05
29 74 0.95
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACC
Found at i:48612837 original size:44 final size:44
Alignment explanation
Indices: 48612787--48612877 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
48612777 AGTGGTAAAG
48612787 TTATGTTGTATATTCATTTATGTGCAACTTACTAAGCTTTATGC
1 TTATGTTGTATATTCATTTATGTGCAACTTACTAAGCTTTATGC
48612831 TTATGTTGTATATTCATTTATGTGCAACTTACTAAGCTTTATGC
1 TTATGTTGTATATTCATTTATGTGCAACTTACTAAGCTTTATGC
48612875 TTA
1 TTA
48612878 CTCCCTCTCC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.48
Consensus pattern (44 bp):
TTATGTTGTATATTCATTTATGTGCAACTTACTAAGCTTTATGC
Found at i:48613803 original size:34 final size:34
Alignment explanation
Indices: 48613760--48613831 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
48613750 ATGAGATCGA
*
48613760 GTTAGGTAATGCCTCGTATTTCGCTCTGGCGTGG
1 GTTAGGTAATGCCTCATATTTCGCTCTGGCGTGG
48613794 GTTAGGTAATGCCTCATATTTCGCTCTGGCGTGG
1 GTTAGGTAATGCCTCATATTTCGCTCTGGCGTGG
48613828 GTTA
1 GTTA
48613832 CGGGTATGGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.14, C:0.19, G:0.31, T:0.36
Consensus pattern (34 bp):
GTTAGGTAATGCCTCATATTTCGCTCTGGCGTGG
Found at i:48617549 original size:13 final size:13
Alignment explanation
Indices: 48617531--48617555 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48617521 TAATGGTATA
48617531 TTGAATCCATGAT
1 TTGAATCCATGAT
48617544 TTGAATCCATGA
1 TTGAATCCATGA
48617556 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:48619123 original size:48 final size:48
Alignment explanation
Indices: 48619064--48619765 Score: 1287
Period size: 48 Copynumber: 14.6 Consensus size: 48
48619054 AAAGTGTAAT
*
48619064 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGGA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48619112 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
48619160 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48619208 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
48619256 TATGTGGTAAAGCCCAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
48619304 TATGTGGTAAAGCCCAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48619352 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
48619400 TATGTGGTAAAGCCCAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
48619448 TATGTGGTAAAGCCCAATGGCTAATGTGAAAAACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48619496 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
48619544 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48619592 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48619640 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
48619688 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48619736 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
48619766 TGTTGTAACA
Statistics
Matches: 635, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 635 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:48619863 original size:37 final size:37
Alignment explanation
Indices: 48619813--48619932 Score: 213
Period size: 37 Copynumber: 3.2 Consensus size: 37
48619803 AATATATTCT
48619813 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
48619850 GGGTAAGGCCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
48619887 GGGTAAGACCCGATGACTACGTGTAGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
48619924 TGGTAAGAC
1 GGGTAAGAC
48619933 TTCATAATAA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:48621899 original size:40 final size:40
Alignment explanation
Indices: 48621853--48622193 Score: 370
Period size: 40 Copynumber: 8.6 Consensus size: 40
48621843 TGAATGATAC
* ** *
48621853 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATGTAT
** * * * *
48621893 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* ** * * *
48621933 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
48621973 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
48622012 CCGGACTAAGTTCCGAAGAGCAATCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
48622052 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
48622092 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
48622132 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
48622172 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
48622194 ATCATGCTGG
Statistics
Matches: 271, Mismatches: 22, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
39 24 0.09
40 241 0.89
41 6 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:48624073 original size:40 final size:39
Alignment explanation
Indices: 48624028--48624157 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
48624018 CGGAATATAA
48624028 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
48624068 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
48624108 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
48624148 CCGGATATAA
1 CCGGATATAA
48624158 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48624172 original size:40 final size:40
Alignment explanation
Indices: 48624044--48624195 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
48624034 ATAACCATGT
* * *
48624044 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
48624084 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
48624124 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
48624164 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
48624196 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:48624178 original size:80 final size:80
Alignment explanation
Indices: 48624044--48624193 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
48624034 ATAACCATGT
*
48624044 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
48624108 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
48624124 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
48624187 CCCGGAT
64 CCCGGAT
48624194 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:48632079 original size:40 final size:39
Alignment explanation
Indices: 48632034--48632163 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
48632024 CGGAATATAA
48632034 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
48632074 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
48632114 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
48632154 CCGGATATAA
1 CCGGATATAA
48632164 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48632178 original size:40 final size:40
Alignment explanation
Indices: 48632050--48632201 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
48632040 ATAACCATGT
* * *
48632050 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
48632090 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
48632130 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
48632170 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
48632202 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:48632184 original size:80 final size:80
Alignment explanation
Indices: 48632050--48632199 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
48632040 ATAACCATGT
*
48632050 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
48632114 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
48632130 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
48632193 CCCGGAT
64 CCCGGAT
48632200 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:48635556 original size:13 final size:13
Alignment explanation
Indices: 48635538--48635562 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48635528 TAATGGTATA
48635538 TTGAATCCATGAT
1 TTGAATCCATGAT
48635551 TTGAATCCATGA
1 TTGAATCCATGA
48635563 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:48637188 original size:48 final size:48
Alignment explanation
Indices: 48637071--48637578 Score: 966
Period size: 48 Copynumber: 10.6 Consensus size: 48
48637061 AAAGTGTAAT
48637071 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG-A
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
48637118 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48637166 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48637214 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48637262 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48637310 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48637358 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG-TATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48637405 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48637453 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
48637501 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
48637549 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
48637579 TGTTGTAACA
Statistics
Matches: 453, Mismatches: 6, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
47 92 0.20
48 361 0.80
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:48637438 original size:239 final size:239
Alignment explanation
Indices: 48637071--48637578 Score: 973
Period size: 239 Copynumber: 2.1 Consensus size: 239
48637061 AAAGTGTAAT
48637071 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGATATGTGGTAAAGCCGAAT
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGATATGTGGTAAAGCCGAAT
48637136 GGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
66 GGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
48637201 TGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATG
131 TGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATG
* *
48637266 TGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
196 TGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATGAA
48637310 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG-ATATGTGGTAAAGCCGAA
48637375 TGGCTAATGTGAAATACATGTGTG-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
65 TGGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAC
48637439 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATAT
130 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATAT
*
48637504 GTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
195 GTGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATGAA
48637549 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
48637579 TGTTGTAACA
Statistics
Matches: 265, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
239 223 0.84
240 42 0.16
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (239 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGATATGTGGTAAAGCCGAAT
GGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACA
TGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATG
TGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATGAA
Found at i:48637673 original size:37 final size:37
Alignment explanation
Indices: 48637623--48637745 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
48637613 GGAAATATAT
48637623 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48637660 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48637697 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48637734 TCCGGGTAAGAC
1 TCCGGGTAAGAC
48637746 TTCGTAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48639710 original size:40 final size:40
Alignment explanation
Indices: 48639664--48640004 Score: 352
Period size: 40 Copynumber: 8.6 Consensus size: 40
48639654 TGAATGATAC
* ** *
48639664 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATGTAT
** * * * *
48639704 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* ** * * *
48639744 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
*
48639784 CC-GGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
48639823 CCGGACTAAGTTCCGAAGAGCAATCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
48639863 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
48639903 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
48639943 CTGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
48639983 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
48640005 ATCATGCTGG
Statistics
Matches: 267, Mismatches: 26, Indels: 16
0.86 0.08 0.05
Matches are distributed among these distances:
39 23 0.09
40 238 0.89
41 6 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:48642166 original size:13 final size:13
Alignment explanation
Indices: 48642148--48642172 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48642138 TAATGGTATA
48642148 TTGAATCCATGAT
1 TTGAATCCATGAT
48642161 TTGAATCCATGA
1 TTGAATCCATGA
48642173 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:48642790 original size:26 final size:28
Alignment explanation
Indices: 48642724--48642790 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 28
48642714 GTGAATCCGC
*
48642724 ACACTTAGTGCTATATACATTCAGCTCG
1 ACACTTAGTGCTATATACATTCAACTCG
48642752 CACACTTAGTGCTATATA-A-TCAAACTCG
1 -ACACTTAGTGCTATATACATTC-AACTCG
48642780 -CACTTAGTGCT
1 ACACTTAGTGCT
48642791 GTACAATTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
26 11 0.31
27 2 0.06
28 6 0.17
29 17 0.47
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.31
Consensus pattern (28 bp):
ACACTTAGTGCTATATACATTCAACTCG
Found at i:48650855 original size:28 final size:29
Alignment explanation
Indices: 48650788--48650888 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
48650778 ATAGTGAATC
*
48650788 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
48650817 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
48650845 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
48650875 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48650889 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:48652878 original size:29 final size:27
Alignment explanation
Indices: 48652844--48652946 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
48652834 TACTCGATCA
*
48652844 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
48652873 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
48652902 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
48652931 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
48652947 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:48654288 original size:16 final size:18
Alignment explanation
Indices: 48654255--48654291 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
48654245 TCCACACACA
48654255 TTTTTTTTCATCATTTTCT
1 TTTTTTTTCA-CATTTTCT
48654274 TTTTTTTTC-CA-TTTCT
1 TTTTTTTTCACATTTTCT
48654290 TT
1 TT
48654292 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
19 9 0.50
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTTTTCACATTTTCT
Found at i:48656185 original size:38 final size:38
Alignment explanation
Indices: 48656095--48656281 Score: 216
Period size: 38 Copynumber: 4.8 Consensus size: 38
48656085 TCCAGTTACT
* * *
48656095 AGCACTAAGCCTGCGGGACTTTAAGCTCAGATATAATACC
1 AGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAATTCC
* *
48656135 AGCACTAGGCCTGCGGGATTTAACCCGGACATAATTCC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATTCC
* * *
48656173 AGCACGAAGCCTGCTGGATTTAACCCAGATAT-ATTACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATT-CC
*
48656211 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATTCC
*
48656249 AGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCACTA-AGCCTGCGGG-ATTTAA-CCCGGATA
48656282 CACATCAAAT
Statistics
Matches: 128, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
37 4 0.03
38 86 0.67
39 13 0.10
40 25 0.20
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATAATTCC
Found at i:48656211 original size:76 final size:78
Alignment explanation
Indices: 48656095--48656281 Score: 254
Period size: 76 Copynumber: 2.4 Consensus size: 78
48656085 TCCAGTTACT
* * * *
48656095 AGCACTAAGCCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAACC
1 AGCACGAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
48656160 CGGACATAATTCC
66 CGGACATAATTCC
* *
48656173 AGCACGAAGCCTGCTGGA-TTTAA-CCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAACC
1 AGCACGAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
*
48656236 CGGATATAATTCC
66 CGGACATAATTCC
* * *
48656249 AGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCACGA-AGCCTGCGGGACTTTAAGCCCAGATA
48656282 CACATCAAAT
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
75 1 0.01
76 61 0.64
77 10 0.11
78 23 0.24
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (78 bp):
AGCACGAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
CGGACATAATTCC
Found at i:48660254 original size:28 final size:29
Alignment explanation
Indices: 48660210--48660278 Score: 97
Period size: 28 Copynumber: 2.4 Consensus size: 29
48660200 AAAATTGTAC
* *
48660210 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTACGAG-CTGAATGTATAT
48660238 AGCACTAAGTGTACGAGCTGAATGTATAT
1 AGCACTAAGTGTACGAGCTGAATGTATAT
48660267 AGCACTAAGTGT
1 AGCACTAAGTGT
48660279 GCGGATTCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.49
29 17 0.46
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (29 bp):
AGCACTAAGTGTACGAGCTGAATGTATAT
Found at i:48661102 original size:50 final size:50
Alignment explanation
Indices: 48661043--48661148 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
48661033 CTGCCAGTAG
48661043 TAGTGAGGTGAGATGGAAAAATCACTAAAAATAGTAGAAGTAGAATTAAA
1 TAGTGAGGTGAGATGGAAAAATCACTAAAAATAGTAGAAGTAGAATTAAA
*
48661093 TAGTGAGGTGAGATGGAAAAATCACTAAAAATAGTATAAGTAGAATTAAA
1 TAGTGAGGTGAGATGGAAAAATCACTAAAAATAGTAGAAGTAGAATTAAA
48661143 TAGTGA
1 TAGTGA
48661149 ATAAACTATG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.49, C:0.04, G:0.24, T:0.24
Consensus pattern (50 bp):
TAGTGAGGTGAGATGGAAAAATCACTAAAAATAGTAGAAGTAGAATTAAA
Found at i:48662846 original size:19 final size:19
Alignment explanation
Indices: 48662822--48662863 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
48662812 ATATTCCAAA
48662822 GATGATGTCTCGATAGTGT
1 GATGATGTCTCGATAGTGT
48662841 GATGATGTCTCGATAGTGT
1 GATGATGTCTCGATAGTGT
48662860 GATG
1 GATG
48662864 CTGCCTCCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.10, G:0.33, T:0.36
Consensus pattern (19 bp):
GATGATGTCTCGATAGTGT
Found at i:48664637 original size:30 final size:30
Alignment explanation
Indices: 48664603--48664660 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
48664593 CAAAATCATT
*
48664603 TTTTGGAAAAATTACATTTTTGCCCCTAAA
1 TTTTGGAAAAATTACACTTTTGCCCCTAAA
***
48664633 TTTTGTCGAAATTACACTTTTGCCCCTA
1 TTTTGGAAAAATTACACTTTTGCCCCTA
48664661 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTTGGAAAAATTACACTTTTGCCCCTAAA
Found at i:48670949 original size:20 final size:21
Alignment explanation
Indices: 48670904--48670968 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
48670894 AGTTTCTATT
* *
48670904 AAAAAATTATT-AAATAATTCA
1 AAAAAAATATTAAAAAAATT-A
*
48670925 TAAAAAAT-TTAAAAAAA-TA
1 AAAAAAATATTAAAAAAATTA
48670944 AAAAAAATATTAAAAAAATATA
1 AAAAAAATATTAAAAAAAT-TA
48670966 AAA
1 AAA
48670969 CACGATTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
19 8 0.22
20 12 0.33
21 11 0.31
22 5 0.14
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAAAAATATTAAAAAAATTA
Found at i:48670961 original size:11 final size:11
Alignment explanation
Indices: 48670900--48670968 Score: 60
Period size: 11 Copynumber: 6.7 Consensus size: 11
48670890 TTTCAGTTTC
*
48670900 TATTAAAAAAT
1 TATTAAAAAAA
*
48670911 TATT-AAATAA
1 TATTAAAAAAA
*
48670921 T-TCATAAAAAA
1 TATTA-AAAAAA
48670932 T-TTAAAAAAA
1 TATTAAAAAAA
48670942 TA--AAAAAAA
1 TATTAAAAAAA
48670951 TATTAAAAAAA
1 TATTAAAAAAA
48670962 TA-TAAAA
1 TATTAAAA
48670969 CACGATTCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
9 10 0.21
10 17 0.35
11 21 0.44
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (11 bp):
TATTAAAAAAA
Found at i:48673068 original size:17 final size:16
Alignment explanation
Indices: 48673046--48673080 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
48673036 GGAAACTAAG
48673046 TTTAGAAGATTTGTATT
1 TTTAGAAGATTTGT-TT
48673063 TTTAGAAGATTTGTTT
1 TTTAGAAGATTTGTTT
48673079 TT
1 TT
48673081 GTAATATTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (16 bp):
TTTAGAAGATTTGTTT
Done.