Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 174 of 345
Found at i:48977304 original size:26 final size:24
Alignment explanation
Indices: 48977167--48977305 Score: 66
Period size: 27 Copynumber: 5.3 Consensus size: 24
48977157 TTTATTGATT
*
48977167 GAGGGTATTTCAGTAATTTTGCAAAC
1 GAGGGTATTTCGGTAA-TTT-CAAAC
48977193 TGAGGGTATTTCGGTAATTTTACAAATC
1 -GAGGGTATTTCGGTAA-TTT-CAAA-C
* * *
48977221 GAGGATATTTGGGTAATTTTATAAACC
1 GAGGGTATTTCGGTAA-TTT-CAAA-C
* *
48977248 G-GTGTACTTT-GGTAATTTTACAAC
1 GAGGGTA-TTTCGGTAATTTCA-AAC
* *
48977272 TGGGGGTATTTCAGTAATTTCATAATC
1 -GAGGGTATTTCGGTAATTTCA-AA-C
48977299 GAGGGTA
1 GAGGGTA
48977306 AAATGGTAAT
Statistics
Matches: 92, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
24 3 0.03
25 9 0.10
26 28 0.30
27 51 0.55
28 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (24 bp):
GAGGGTATTTCGGTAATTTCAAAC
Found at i:48977336 original size:27 final size:27
Alignment explanation
Indices: 48977285--48977491 Score: 238
Period size: 27 Copynumber: 7.7 Consensus size: 27
48977275 GGGTATTTCA
*
48977285 GTAATTTCAT-AATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
48977311 GTAATTTTATAAA-CTGAGGGTAAAATG
1 GTAATTTTATAAATC-GAGGGTAAAATG
* **
48977338 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
48977365 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
48977392 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
48977419 GTAATTTTGTAAATCGAGGGTGAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * ***
48977446 GTAATTCTGTAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
48977473 GTAATTTTACAAATTGAGG
1 GTAATTTTATAAATCGAGG
48977492 ACATTTTAGT
Statistics
Matches: 156, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
26 10 0.06
27 145 0.93
28 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:48977390 original size:81 final size:80
Alignment explanation
Indices: 48977295--48977491 Score: 304
Period size: 81 Copynumber: 2.4 Consensus size: 80
48977285 GTAATTTCAT
48977295 AATCGAGGGTAAAATGGTAATTTTATAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAA-TGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
48977360 AAACAGTAATTCTGTA
65 AAACAGTAATTCTGTA
* *
48977376 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTTTATAAAT-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
*
48977441 AAACGGTAATTCTGTA
65 AAACAGTAATTCTGTA
*** *
48977457 AATCGAGGGTACTTTGGTAATTTTACAAATTGAGG
1 AATCGAGGGTAAAATGGTAATTTTATAAA-TGAGG
48977492 ACATTTTAGT
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
80 1 0.01
81 104 0.98
82 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (80 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAA
AACAGTAATTCTGTA
Found at i:48982008 original size:28 final size:28
Alignment explanation
Indices: 48981968--48982027 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
48981958 TTACCTCTTA
*
48981968 GGGTTGTAACAGTCATTTCATCAATACG
1 GGGTTATAACAGTCATTTCATCAATACG
48981996 GGGTTATAACAGTCATTTCATCAATACG
1 GGGTTATAACAGTCATTTCATCAATACG
48982024 GGGT
1 GGGT
48982028 CTAAAAGTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (28 bp):
GGGTTATAACAGTCATTTCATCAATACG
Found at i:48983413 original size:12 final size:12
Alignment explanation
Indices: 48983398--48983427 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
48983388 CCTTGATCCA
48983398 CTCCTCAAATCT
1 CTCCTCAAATCT
*
48983410 CTCCCCAAATCT
1 CTCCTCAAATCT
48983422 CTCCTC
1 CTCCTC
48983428 TCATCCCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.20, C:0.50, G:0.00, T:0.30
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:48986992 original size:138 final size:138
Alignment explanation
Indices: 48986469--48987162 Score: 1045
Period size: 138 Copynumber: 5.0 Consensus size: 138
48986459 ACATAGATAA
48986469 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTA-AATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTAC-AGAATTTATTAAT
** *
48986533 ATAAACAGTTATATTAATTAATTTC-AGTCAAAATATAAAAGACACAGAAAGTAATATTCTTTTG
65 ATAAACAGTTATATTAATTAATTTCGA-TCAAAATATAAAAGACATGGAAATTAATATTCTTTTG
48986597 GAAA-AATAT
129 GAAAGAATAT
* * *
48986606 AATTAATCTATGAATTTGATTCATACAACATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATTAATA
* * **
48986671 TAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
48986736 AAGAATAT
131 AAGAATAT
* * * *
48986744 AATTAATACATGAATTTGGTTCATACAAAATATTAATTGTATATTTATTTACTGAATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATAT-TTTACAGAATTTATTAAT
* * *
48986809 ATAAACAGTTATATTAATTAATTTCAATCAAAATATAAAAGACATGGAAATTAATATTATTTCGG
65 ATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGG
*
48986874 AAAGAATGT
130 AAAGAATAT
* * *
48986883 AATTAATATATGAATTTGATTCATATAAAATGTTATTTGTATATATTTTACAGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATTAATA
* *
48986948 TAAACAGTTATATTAACTAATTTCGATCAAAATATATAAGACATGGAAATTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
48987013 AAGAATAT
131 AAGAATAT
* * **
48987021 AATTAGTATATGAATTTGATTCATACAAGATATTAGCTGTATATATTTTACCA-AATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CAGAATTTATTAAT
* * * *
48987085 ATAAGCAGTTATATTAATTAATTTCGGTCAAAATATATAAGACATGGAAATTAATATTCTTTTGA
65 ATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGG
48987150 AAAGAATAT
130 AAAGAATAT
48987159 AATT
1 AATT
48987163 CTCTTTTCTA
Statistics
Matches: 507, Mismatches: 45, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
137 122 0.24
138 260 0.51
139 125 0.25
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATTTATTAATA
TAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
AAGAATAT
Found at i:48987100 original size:276 final size:276
Alignment explanation
Indices: 48986469--48987162 Score: 1084
Period size: 277 Copynumber: 2.5 Consensus size: 276
48986459 ACATAGATAA
48986469 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATTAATA
** *
48986534 TAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACACAGAAAGTAATATTCTTTTGGA
66 TAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
* * *
48986599 AA-AATATAATTAATCTATGAATTTGATTCATACAACATATTAATTGTATATATTTTACCGAATT
131 AAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATT
* *
48986663 TATTAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATAAAAATTAATATT
196 TATTAATATAAACAATTATATTAACTAATTTCGATCAAAATATAAAAGACATAAAAATTAATATT
48986728 CTTTTGGAAAGAATAT
261 CTTTTGGAAAGAATAT
* * * *
48986744 AATTAATACATGAATTTGGTTCATACAAAATATTAATTGTATATTTATTTACTGAATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATAT-TTTACTAAATTTATTAAT
* * *
48986809 ATAAACAGTTATATTAATTAATTTCAATCAAAATATAAAAGACATGGAAATTAATATTATTTCGG
65 ATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGG
* * * *
48986874 AAAGAATGTAATTAATATATGAATTTGATTCATATAAAATGTTATTTGTATATATTTTACAGAAT
130 AAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAAT
* * **
48986939 TTATTAATATAAACAGTTATATTAACTAATTTCGATCAAAATATATAAGACATGGAAATTAATAT
195 TTATTAATATAAACAATTATATTAACTAATTTCGATCAAAATATAAAAGACATAAAAATTAATAT
48987004 TCTTTTGGAAAGAATAT
260 TCTTTTGGAAAGAATAT
* * ** *
48987021 AATTAGTATATGAATTTGATTCATACAAGATATTAGCTGTATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATTAATA
* * * *
48987086 TAAGCAGTTATATTAATTAATTTCGGTCAAAATATATAAGACATGGAAATTAATATTCTTTTGAA
66 TAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
48987151 AAGAATATAATT
131 AAGAATATAATT
48987163 CTCTTTTCTA
Statistics
Matches: 377, Mismatches: 40, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
275 43 0.11
276 165 0.44
277 169 0.45
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (276 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATTAATA
TAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
AAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAGAATT
TATTAATATAAACAATTATATTAACTAATTTCGATCAAAATATAAAAGACATAAAAATTAATATT
CTTTTGGAAAGAATAT
Found at i:48987229 original size:75 final size:75
Alignment explanation
Indices: 48987138--48987287 Score: 250
Period size: 75 Copynumber: 2.0 Consensus size: 75
48987128 ATGGAAATTA
48987138 ATATTCTTTTGAAAAGAATATAATTC-TCTTTTCTAACTTTCCATTTGTCTTCTCTATTAAT-AA
1 ATATTCTTTTGAAAAGAATATAATTCAT-TTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAA
48987201 GAGAATAATCAT
65 G-GAATAATCAT
* *
48987213 ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTTATAAAG
1 ATATTCTTTTGAAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAAG
48987278 GAATAATCAT
66 GAATAATCAT
48987288 GGTTTTCCTT
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
75 67 0.94
76 4 0.06
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (75 bp):
ATATTCTTTTGAAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAAG
GAATAATCAT
Found at i:48990900 original size:28 final size:28
Alignment explanation
Indices: 48990869--48990923 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
48990859 TTCTCCTAAT
*
48990869 GGTAACCATCCATGATACGACTCTTAAG
1 GGTAACCATCCATGATACAACTCTTAAG
*
48990897 GGTAACCATCTATGATACAACTCTTAA
1 GGTAACCATCCATGATACAACTCTTAA
48990924 AGTTAAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (28 bp):
GGTAACCATCCATGATACAACTCTTAAG
Found at i:48991478 original size:17 final size:17
Alignment explanation
Indices: 48991456--48991490 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
48991446 TTTTAATAGA
48991456 TTTATGTCTATATTTAG
1 TTTATGTCTATATTTAG
48991473 TTTATGTCTATATTTAG
1 TTTATGTCTATATTTAG
48991490 T
1 T
48991491 GCATATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.11, T:0.60
Consensus pattern (17 bp):
TTTATGTCTATATTTAG
Found at i:48991692 original size:230 final size:230
Alignment explanation
Indices: 48991289--48991738 Score: 837
Period size: 230 Copynumber: 2.0 Consensus size: 230
48991279 AGCTGGTTAA
* *
48991289 TTGAGTAAGTACAGTATTTTTTTTTATTGAGTGTCGTACTCTGTTGGATTCACCTTCTGGCGAAT
1 TTGAGTAAGTAAAGTATTTTTTTTTATTGAGTGGCGTACTCTGTTGGATTCACCTTCTGGCGAAT
*
48991354 TCCAAGTTTTAACGAACTCTAGGGTTTAGGGGGCTCTTCTATTAAATATCCGCCCACCCCAGATG
66 TCCAAGTTTTAACGAACTCTAGGGTTTAGGGGGCTATTCTATTAAATATCCGCCCACCCCAGATG
48991419 TTTTGAGCGAACTCGTTAAGTTCGCAATTTTAATAGATTTATGTCTATATTTAGTTTATGTCTAT
131 TTTTGAGCGAACTCGTTAAGTTCGCAATTTTAATAGATTTATGTCTATATTTAGTTTATGTCTAT
48991484 ATTTAGTGCATATTATGATAACTTATGTCTATATT
196 ATTTAGTGCATATTATGATAACTTATGTCTATATT
48991519 TTGAGTAAGTAAAGTATTTTTTTTTATTGAGTGGCGTACTCTGTTGGATTCACCTTCTGGCGAAT
1 TTGAGTAAGTAAAGTATTTTTTTTTATTGAGTGGCGTACTCTGTTGGATTCACCTTCTGGCGAAT
* *
48991584 TCCAAGTTTTAACGAACTCTAGGGTTTAGGGGGCTATTTTATTAAATATCCGCTCACCCCAGATG
66 TCCAAGTTTTAACGAACTCTAGGGTTTAGGGGGCTATTCTATTAAATATCCGCCCACCCCAGATG
*
48991649 TTTTGAGTGAACTCGTTAAGTTCGCAATTTTAATAGATTTATGTCTATATTTAGTTTATGTCTAT
131 TTTTGAGCGAACTCGTTAAGTTCGCAATTTTAATAGATTTATGTCTATATTTAGTTTATGTCTAT
*
48991714 ATTTAGTGCATATTATGATGACTTA
196 ATTTAGTGCATATTATGATAACTTA
48991739 GTTAGTCATG
Statistics
Matches: 213, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
230 213 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (230 bp):
TTGAGTAAGTAAAGTATTTTTTTTTATTGAGTGGCGTACTCTGTTGGATTCACCTTCTGGCGAAT
TCCAAGTTTTAACGAACTCTAGGGTTTAGGGGGCTATTCTATTAAATATCCGCCCACCCCAGATG
TTTTGAGCGAACTCGTTAAGTTCGCAATTTTAATAGATTTATGTCTATATTTAGTTTATGTCTAT
ATTTAGTGCATATTATGATAACTTATGTCTATATT
Found at i:48991708 original size:17 final size:17
Alignment explanation
Indices: 48991686--48991720 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
48991676 TTTTAATAGA
48991686 TTTATGTCTATATTTAG
1 TTTATGTCTATATTTAG
48991703 TTTATGTCTATATTTAG
1 TTTATGTCTATATTTAG
48991720 T
1 T
48991721 GCATATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.11, T:0.60
Consensus pattern (17 bp):
TTTATGTCTATATTTAG
Found at i:49005605 original size:33 final size:34
Alignment explanation
Indices: 49005558--49005639 Score: 112
Period size: 34 Copynumber: 2.4 Consensus size: 34
49005548 TTGACATCGT
**
49005558 AATGGGCTTGGGCCC-CACTAATACTGTTACTGA
1 AATGGGCTAAGGCCCACACTAATACTGTTACTGA
* * *
49005591 AATGGGCTCAGGCCCAGACTACTACTGTTACTGA
1 AATGGGCTAAGGCCCACACTAATACTGTTACTGA
49005625 AATGGGCTAAGGCCC
1 AATGGGCTAAGGCCC
49005640 TAACTGAAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 13 0.30
34 30 0.70
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (34 bp):
AATGGGCTAAGGCCCACACTAATACTGTTACTGA
Found at i:49005622 original size:34 final size:34
Alignment explanation
Indices: 49005574--49005639 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
49005564 CTTGGGCCCC
*
49005574 ACTAATACTGTTACTGAAATGGGCTCAGGCCCAG
1 ACTAATACTGTTACTGAAATGGGCTAAGGCCCAG
*
49005608 ACTACTACTGTTACTGAAATGGGCTAAGGCCC
1 ACTAATACTGTTACTGAAATGGGCTAAGGCCC
49005640 TAACTGAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (34 bp):
ACTAATACTGTTACTGAAATGGGCTAAGGCCCAG
Found at i:49011102 original size:49 final size:49
Alignment explanation
Indices: 49011030--49011395 Score: 642
Period size: 49 Copynumber: 7.5 Consensus size: 49
49011020 ATGAGATATA
*
49011030 TATATGTGATAAGGCCTAATGGCCGAGGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
49011079 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
* *
49011128 TATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
* * * *
49011177 TATATGTGATAAGGCCTAACGGCCAAGGTAGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
49011226 TATATGTGATAAGGCCTAATGGCCGATGTGGAGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
49011275 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
49011324 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
49011373 TATATGTGATAAGGCCTAATGGC
1 TATATGTGATAAGGCCTAATGGC
49011396 TAATGTAAAA
Statistics
Matches: 303, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 303 1.00
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:49011547 original size:37 final size:37
Alignment explanation
Indices: 49011497--49011581 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
49011487 GGAATATGTT
*
49011497 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
49011534 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
49011571 CCGGGTAAGAC
1 CCGGGTAAGAC
49011582 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:49013699 original size:29 final size:29
Alignment explanation
Indices: 49013667--49014059 Score: 714
Period size: 29 Copynumber: 13.6 Consensus size: 29
49013657 CGTTAACCGA
* *
49013667 GCACTATGTGTGTGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
49013696 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
49013725 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
49013754 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
49013783 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
49013812 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
49013841 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
49013870 GCACTATGTGTGGGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
49013899 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
49013928 GCACTATGTGTGCAAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
49013957 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
49013986 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
49014015 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
49014044 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
49014060 TTTTTCAACA
Statistics
Matches: 356, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 356 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:49017610 original size:27 final size:27
Alignment explanation
Indices: 49017578--49017660 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
49017568 CTAATGGCCG
49017578 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
* *** ***
49017605 ATGTGAT-AAGGCCTAA-TGGCCG-A-
1 ATGTGATGAATGTGAAAGTGTATGTAT
49017628 -TGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
49017654 ATGTGAT
1 ATGTGAT
49017661 AAGGCCTAAC
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATGTAT
Found at i:49017640 original size:49 final size:49
Alignment explanation
Indices: 49017505--49017820 Score: 571
Period size: 49 Copynumber: 6.5 Consensus size: 49
49017495 ATGAGATATA
*
49017505 TATATGTGATAAGGCCTAATGGCCGAGGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
49017554 TATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
49017602 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
* *
49017651 TATATGTGATAAGGCCTAACGGCCGAGGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
49017700 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
49017749 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
49017798 TATATGTGATAAGGCCTAATGGC
1 TATATGTGATAAGGCCTAATGGC
49017821 TAATGTAAAA
Statistics
Matches: 258, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 46 0.18
49 212 0.82
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:49017972 original size:37 final size:37
Alignment explanation
Indices: 49017922--49018006 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
49017912 GGAATATGTT
*
49017922 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
49017959 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
49017996 CCGGGTAAGAC
1 CCGGGTAAGAC
49018007 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:49027186 original size:40 final size:40
Alignment explanation
Indices: 49027135--49027236 Score: 152
Period size: 40 Copynumber: 2.5 Consensus size: 40
49027125 AAGCAGCTAC
* *
49027135 ATCCGGACTAAGATCCGAAGGCATTAATGCTAGTGACTAT
1 ATCCGGGCTAAGATCCGAAGGCATTAATGCTAGTGACCAT
*
49027175 ATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACCAT
1 ATCCGGGCTAAGAT-CCGAAGGCATTAATGCTAGTGACCAT
*
49027215 ATCCGGGCTAAGACCCGAAGGC
1 ATCCGGGCTAAGATCCGAAGGC
49027237 CTTGTGCGAG
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.02
40 55 0.98
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGATCCGAAGGCATTAATGCTAGTGACCAT
Found at i:49035004 original size:17 final size:17
Alignment explanation
Indices: 49034982--49035024 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
49034972 ATTTCATTTA
**
49034982 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
49034999 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
49035016 AAAT-TCAAT
1 AAATGTCAAT
49035025 ACAATCATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:49035225 original size:17 final size:15
Alignment explanation
Indices: 49035178--49035239 Score: 72
Period size: 15 Copynumber: 4.0 Consensus size: 15
49035168 AGAAAACCCA
49035178 ATAAA-AAAGTCCAAG
1 ATAAAGAAA-TCCAAG
*
49035193 ATAGAGAAATCCAAG
1 ATAAAGAAATCCAAG
49035208 ATAAAGAAACTCCCAAG
1 ATAAAGAAA-T-CCAAG
*
49035225 ATTAAGAAATCCAAG
1 ATAAAGAAATCCAAG
49035240 TTACAAAACC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
15 23 0.56
16 5 0.12
17 13 0.32
ACGTcount: A:0.55, C:0.16, G:0.15, T:0.15
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49039338 original size:29 final size:29
Alignment explanation
Indices: 49039306--49039433 Score: 238
Period size: 29 Copynumber: 4.4 Consensus size: 29
49039296 ATAGTGAATC
49039306 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
49039335 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
49039364 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
49039393 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
49039422 CGCACACTTAGT
1 CGCACACTTAGT
49039434 ACTGTACAAT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:49046703 original size:40 final size:40
Alignment explanation
Indices: 49046630--49046837 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
49046620 CAATTGAATG
* * ** *
49046630 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
49046670 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
49046710 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
49046750 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
49046790 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
49046830 ATATCCGG
1 ATATCCGG
49046838 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:49046768 original size:80 final size:80
Alignment explanation
Indices: 49046632--49046837 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
49046622 ATTGAATGAT
* * ** * * * *
49046632 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
49046696 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
49046712 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
49046777 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
49046792 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
49046838 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:49054757 original size:40 final size:40
Alignment explanation
Indices: 49054684--49054891 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
49054674 CAATTGAATG
* * ** *
49054684 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
49054724 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
49054764 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
49054804 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
49054844 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
49054884 ATATCCGG
1 ATATCCGG
49054892 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:49054822 original size:80 final size:80
Alignment explanation
Indices: 49054686--49054891 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
49054676 ATTGAATGAT
* * ** * * * *
49054686 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
49054750 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
49054766 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
49054831 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
49054846 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
49054892 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:49058546 original size:29 final size:29
Alignment explanation
Indices: 49058511--49058638 Score: 229
Period size: 29 Copynumber: 4.4 Consensus size: 29
49058501 ATAGTGAATC
49058511 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
49058540 CGTACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
49058569 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
49058598 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
49058627 CGCACACTTAGT
1 CGCACACTTAGT
49058639 ACTGTACAAT
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:49066243 original size:15 final size:15
Alignment explanation
Indices: 49066206--49066267 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
49066196 ATAAAACCCA
* *
49066206 ATAAAGAAGTCCGAG
1 ATAAAGAAATCCAAG
* *
49066221 ACAGAGAAATCCAAG
1 ATAAAGAAATCCAAG
49066236 ATAAAGAAACTCCCAAG
1 ATAAAGAAA-T-CCAAG
**
49066253 ATTTAGAAATCCAAG
1 ATAAAGAAATCCAAG
49066268 TTACAATACC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
15 23 0.62
16 2 0.05
17 12 0.32
ACGTcount: A:0.50, C:0.18, G:0.18, T:0.15
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49070188 original size:40 final size:39
Alignment explanation
Indices: 49070129--49070328 Score: 170
Period size: 40 Copynumber: 5.0 Consensus size: 39
49070119 GAATTTAGCT
* ** *
49070129 GGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCC
1 GGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGCCC
* *** * *
49070169 GGATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGCCC
49070209 GGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGCCC
* * *
49070249 GGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCC
1 GGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGCCC
* * * *
49070289 GGATATATTC-ACTAGCATAAATGCCTTCGGGACTTAGCCC
1 GGATATA-ACAACTCGCA-CAATGCCTTCGGGTCTTAGCCC
49070329 AGGTATCATT
Statistics
Matches: 136, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
40 133 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
GGATATAACAACTCGCACAATGCCTTCGGGTCTTAGCCC
Found at i:49070250 original size:80 final size:80
Alignment explanation
Indices: 49070129--49070328 Score: 226
Period size: 80 Copynumber: 2.5 Consensus size: 80
49070119 GAATTTAGCT
* * * * ** *
49070129 GGATATA-ACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT-ATCTTGCACAAATG
1 GGATATATA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCA-CTAGCACAAATG
*
49070192 CCTTCGGGTCTTAGCCC
64 CCTTCGGGACTTAGCCC
* * *
49070209 GGATATA-ACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGC
1 GGATATATAC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
49070273 CTTCGGGACTTAGCCC
65 CTTCGGGACTTAGCCC
* * *
49070289 GGATATATTCACTAGCATAAATGCCTTCGGGACTTAGCCC
1 GGATATATACACTAGCACAAATGCCTTCGGGTCTTAGCCC
49070329 AGGTATCATT
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 98 0.97
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
GGATATATACACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGCC
TTCGGGACTTAGCCC
Found at i:49074162 original size:21 final size:21
Alignment explanation
Indices: 49074136--49074179 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
49074126 AAACCGTGGT
49074136 AGTAACCGGCAAGTCCCAAAA
1 AGTAACCGGCAAGTCCCAAAA
49074157 AGTAACCGGCAAGTCCCAAAA
1 AGTAACCGGCAAGTCCCAAAA
49074178 AG
1 AG
49074180 CTCCGAACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.27, G:0.20, T:0.09
Consensus pattern (21 bp):
AGTAACCGGCAAGTCCCAAAA
Found at i:49078283 original size:40 final size:40
Alignment explanation
Indices: 49078234--49078441 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
49078224 TCTTCGGAAT
* *
49078234 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
49078273 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * *
49078313 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
49078353 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
49078393 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
49078433 TTAGCCCGG
1 TTAGCCCGG
49078442 GTATCATTCA
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 137 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:49081796 original size:28 final size:29
Alignment explanation
Indices: 49081729--49081829 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
49081719 ATAGTGAATC
*
49081729 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
49081758 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
49081786 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
49081816 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49081830 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:49096821 original size:40 final size:39
Alignment explanation
Indices: 49096657--49096821 Score: 172
Period size: 40 Copynumber: 4.1 Consensus size: 39
49096647 CAGAGTTTAA
* ** * *
49096657 CCGGACATAGCTACTCGTTCAAATACCTTCGGGACATAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC
* *
49096697 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
* *
49096737 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGC
*
49096777 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGC
49096817 CCGGA
1 CCGGA
49096822 CATCATTCGA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
39 5 0.05
40 88 0.84
41 12 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49099375 original size:27 final size:27
Alignment explanation
Indices: 49099352--49099486 Score: 198
Period size: 27 Copynumber: 5.0 Consensus size: 27
49099342 CAAAATTTTT
* *
49099352 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
49099379 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
49099406 GAAATACCCCTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
49099433 GAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
49099460 GAGATACCCTTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
49099487 ATTTTGCCCT
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:49099860 original size:6 final size:6
Alignment explanation
Indices: 49099849--49099902 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
49099839 TATGGGCTTC
* * *
49099849 ATTCTG ATTCTG ATTCTAG CA-CCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCT-G -ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
49099898 ATTCT
1 ATTCT
49099903 AGTTCTAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 1 0.03
6 34 0.87
7 3 0.08
8 1 0.03
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:49106090 original size:27 final size:26
Alignment explanation
Indices: 49106060--49106110 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
49106050 CATTTACTAT
*
49106060 ACAGGGGTATTACAGTCAGTTTGCCCC
1 ACAGGGGCATTACAGTCA-TTTGCCCC
*
49106087 ACAGGGGCATTACGGTCATTTGCC
1 ACAGGGGCATTACAGTCATTTGCC
49106111 AAACCGGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (26 bp):
ACAGGGGCATTACAGTCATTTGCCCC
Found at i:49106119 original size:26 final size:27
Alignment explanation
Indices: 49106060--49106119 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
49106050 CATTTACTAT
* **
49106060 ACAGGGGTATTACAGTCAGTTTGCCCC
1 ACAGGGGCATTACAGTCAGTTTGCCAA
*
49106087 ACAGGGGCATTACGGTCA-TTTGCCAA
1 ACAGGGGCATTACAGTCAGTTTGCCAA
*
49106113 ACCGGGG
1 ACAGGGG
49106120 GTATTTATGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 12 0.43
27 16 0.57
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (27 bp):
ACAGGGGCATTACAGTCAGTTTGCCAA
Found at i:49109459 original size:29 final size:29
Alignment explanation
Indices: 49109427--49109529 Score: 170
Period size: 29 Copynumber: 3.6 Consensus size: 29
49109417 CCTTCGAGCT
** * *
49109427 TGCACACCCAGTGCCGTCTATTTCCAGCA
1 TGCACACTTAGTGCCATATATTTCCAGCA
49109456 TGCACACTTAGTGCCATATATTTCCAGCA
1 TGCACACTTAGTGCCATATATTTCCAGCA
49109485 TGCACACTTAGTGCCATATATTTCCAGCA
1 TGCACACTTAGTGCCATATATTTCCAGCA
49109514 TGCACACTTAGTGCCA
1 TGCACACTTAGTGCCA
49109530 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
TGCACACTTAGTGCCATATATTTCCAGCA
Found at i:49109461 original size:58 final size:58
Alignment explanation
Indices: 49109407--49109529 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 58
49109397 CCGCACACAC
* * * * *
49109407 AGTGCCATACCCTTCGAGCTTGCACACCCAGTGCCGTCTATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
* * **
49109465 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
49109523 AGTGCCA
1 AGTGCCA
49109530 ATCTCGTCAC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (58 bp):
AGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCATGCACACTT
Found at i:49112952 original size:39 final size:40
Alignment explanation
Indices: 49112823--49112942 Score: 197
Period size: 40 Copynumber: 3.0 Consensus size: 40
49112813 TGATGTGAAT
49112823 TTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAA
1 TTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAA
* * * *
49112863 TTGTATCTGGGCTTAAAGACCCGCAGCCTTTGTGCTGGAA
1 TTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAA
49112903 TTGTATCCGGGCTTAAAGACCCGTAGGCTTCGT-CTGGAA
1 TTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAA
49112942 T
1 T
49112943 GACATCCGGG
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 7 0.10
40 65 0.90
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (40 bp):
TTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAA
Found at i:49113643 original size:19 final size:19
Alignment explanation
Indices: 49113619--49113656 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
49113609 GCTGGTGACG
49113619 GTTATGTTTTGTATTGTAA
1 GTTATGTTTTGTATTGTAA
49113638 GTTATGTTTTGTATTGTAA
1 GTTATGTTTTGTATTGTAA
49113657 ATATTTGAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.58
Consensus pattern (19 bp):
GTTATGTTTTGTATTGTAA
Found at i:49124793 original size:68 final size:66
Alignment explanation
Indices: 49124721--49124944 Score: 227
Period size: 68 Copynumber: 3.3 Consensus size: 66
49124711 CATCATGTGT
* * *
49124721 ACAAGA-AGGCTACGAGATACTATATAGTAGCCAGGTCACATGTGTTATACGGGATGTATCCCAT
1 ACAAGAGA-GCTACGAGAGA-TAAAT-GTAGCCAGGTCACATGTGTGATACGGGATGTATCCCAT
49124785 GTAG
63 GTAG
*
49124789 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCCAGGTCACATGTGTGATACGGGATGTATCCCATG
49124854 TAG
64 TAG
* * * * * * * *
49124857 ACAAGAGAGCTACGTGAGAGATAAATGTCGCTAGGTCGCATGAGTGATTCCAAGTGAAGGA-CAC
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCCAGGTCACATGTGTGA-T--ACGGGATGTATC-C
49124921 CATGTAG
60 CATGTAG
49124928 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
49124945 TAAATCGGCT
Statistics
Matches: 138, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
68 95 0.69
69 10 0.07
70 6 0.04
71 27 0.20
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGAGAGATAAATGTAGCCAGGTCACATGTGTGATACGGGATGTATCCCATGTA
G
Found at i:49124978 original size:66 final size:67
Alignment explanation
Indices: 49124781--49124978 Score: 183
Period size: 68 Copynumber: 2.9 Consensus size: 67
49124771 GGGATGTATC
* * * *
49124781 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-CGCTAGGTCGCATGAGTGATACCAAGTGA
* *
49124843 TGTATC-
62 AGGA-CA
*
49124849 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTCGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-CGCTAGGTCGCATGAGTGATACCAAGTGA
49124914 AGGACA
62 AGGACA
* *
49124920 CCATGTAGACAAGAGAGCTAC-GAGATAAAT-CGGCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAATGC-GCTAGGTCGCATGAGTGATACCAAGTG
49124979 TTCACCATGT
Statistics
Matches: 115, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
65 1 0.01
66 24 0.21
67 9 0.08
68 53 0.46
69 1 0.01
70 1 0.01
71 26 0.23
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGCGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:49125550 original size:71 final size:71
Alignment explanation
Indices: 49125467--49125630 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
49125457 GAGATGTATC
49125467 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTCATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTCATTCCAAGTGA
49125532 AGGACA
66 AGGACA
* *
49125538 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTCATTCCAAGTGA
*
49125603 CGGACA
66 AGGACA
49125609 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
49125631 AGACAAATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTCATTCCAAGTGA
AGGACA
Found at i:49125937 original size:689 final size:687
Alignment explanation
Indices: 49124574--49125941 Score: 2082
Period size: 689 Copynumber: 2.0 Consensus size: 687
49124564 ATATATATAT
* *
49124574 TAGCTGATGTTGAAGTATAAACCGACTATTGAAAGAATGGAAATAAATAATAGAGAGAGAGATCC
1 TAGCTGATGTTAAAATATAAACCGACTATTGAAAGAATGGAAATAAATAATAGAGAGAGAGATCC
* * *
49124639 CGATTGAACATTCGAAAAAATCGAATAAAATAGAGGGAGCGTAGCTAGGTCACATGTATGGTGCC
66 CGATTGAACAATCGAAAAAATAGAATAAAATAGAGGGAGCGTAGCTAGGTCACATGTATGATGCC
* * * *
49124704 GAGTGCACATCATGTGTACAAGAAGGCTACGAGATACTATATAGTAGCCAGGTCACATGTGTTAT
131 GAGTGCACATCATGTGTACAAGAAAGCTACGAGACACCATATAGTAGCCAGGTCACATGTGTGAT
* * *
49124769 ACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGT
196 ACGAGATGTATCCCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGT
* * * * * *
49124834 GATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTCGCTAGGTCGCATG
261 CATAAGGGAAGGATCCCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATG
*
49124899 AGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAATCGGCTAGGTCGCAT
326 AGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGACAAATCGGCTAGGTCGCAT
* *
49124964 GAGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCCGAATTAAATGAGATATGATGGTGGGGC
391 GAGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCCGAACTAAACGAGATATGATGGTGGGGC
* *
49125029 TGTGTGCTGAAACTATCAAGTATCGAGGATTATTCCGAATTGTTCAACGGGATGGTTTTGTGGTG
456 TGTGTGCTGAAACCATCAAATATCGAGGATTATTCCGAATTGTTCAACGGGATGGTTTTGTGGTG
* *
49125094 ACATTGTAGTCATAGACCTACACTTGTGATGTATGAAATGTGATGAAAATGATTTGTAGTATATA
521 ACATTGTAGTCATAGACCTACACTTATGATGAATGAAATGTGATGAAAATGATTTGTAGTATATA
* ** * * * *
49125159 TATATGTAAGTTAAAATGAGGTTAGTATAAAGAATGTGTGAAAGAATGAAATTAGCATTAAAACT
586 CATAAATAAGATAAAATGAGGTTAGCATAAAGAATGTGTGAAAGAATAAAACTAGCATTAAAACT
*
49125224 GTTTTGGACAGTAGCAGTGACGTGATTTTAAACATAC
651 GTTTTGGAAAGTAGCAGTGACGTGATTTTAAACATAC
* * *
49125261 TAGCTGATGTTAAAATGTAAATCGACTATTGGAAGAATGGAAATAAAT-ATAGAGAGAGAGATCC
1 TAGCTGATGTTAAAATATAAACCGACTATTGAAAGAATGGAAATAAATAATAGAGAGAGAGATCC
* * * * *
49125325 CGGTTGAACAATCGGAGAGATAGAATGAAATAGAGGGAGCGTAGCTAGGTCACATGTATGATGCC
66 CGATTGAACAATCGAAAAAATAGAATAAAATAGAGGGAGCGTAGCTAGGTCACATGTATGATGCC
* * *
49125390 GAGTGCACATCATGTGTACAAGAAAGCTACGAGACACCCTGTAGTAGCTAGGTCACATGTGTGAT
131 GAGTGCACATCATGTGTACAAGAAAGCTACGAGACACCATATAGTAGCCAGGTCACATGTGTGAT
*
49125455 ACGAGATGTATCCCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGT
196 ACGAGATGTATCCCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGT
* *
49125520 CATTCCAAGTGAAGGA-CACCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCG
261 CA-T--AAGGGAAGGATC-CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCG
* *
49125584 CATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACGAGACAAATCGGCTAGGTC
322 CATGAGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGACAAATCGGCTAGGTC
49125649 GCATGAGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCCGAACTAAACGA-AGTATGATGGT
387 GCATGAGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCCGAACTAAACGAGA-TATGATGGT
*
49125713 GGGGCTGTGTGCTGAAACCATTAAATATCGAGGATTGA-TCCGAATTGTTCAACGGGATGGTTTT
451 GGGGCTGTGTGCTGAAACCATCAAATATCGAGGATT-ATTCCGAATTGTTCAACGGGATGGTTTT
* * * * * * *
49125777 GTGGTGATATTGTGGT-TTGGACCTACACTTATGGTGAATGAAATGTGGTGAAAATGATTTGTGG
515 GTGGTGACATTGTAGTCATAGACCTACACTTATGATGAATGAAATGTGATGAAAATGATTTGTAG
*
49125841 TATATACATAAATAAGATAAAATGAGGTTAGCATAAAGAATGTGTGAAAGAGTAAAACTAGCATT
580 TATATACATAAATAAGATAAAATGAGGTTAGCATAAAGAATGTGTGAAAGAATAAAACTAGCATT
* *
49125906 AAAACTGTTTT-TAAATGGTATCAGTGACGTGATTTT
645 AAAACTGTTTTGGAAA--GTAGCAGTGACGTGATTTT
49125942 GAAAAATCAC
Statistics
Matches: 613, Mismatches: 60, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
686 193 0.31
687 46 0.08
688 111 0.18
689 262 0.43
690 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (687 bp):
TAGCTGATGTTAAAATATAAACCGACTATTGAAAGAATGGAAATAAATAATAGAGAGAGAGATCC
CGATTGAACAATCGAAAAAATAGAATAAAATAGAGGGAGCGTAGCTAGGTCACATGTATGATGCC
GAGTGCACATCATGTGTACAAGAAAGCTACGAGACACCATATAGTAGCCAGGTCACATGTGTGAT
ACGAGATGTATCCCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCACATGCGT
CATAAGGGAAGGATCCCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATG
AGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGACAAATCGGCTAGGTCGCAT
GAGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCCGAACTAAACGAGATATGATGGTGGGGC
TGTGTGCTGAAACCATCAAATATCGAGGATTATTCCGAATTGTTCAACGGGATGGTTTTGTGGTG
ACATTGTAGTCATAGACCTACACTTATGATGAATGAAATGTGATGAAAATGATTTGTAGTATATA
CATAAATAAGATAAAATGAGGTTAGCATAAAGAATGTGTGAAAGAATAAAACTAGCATTAAAACT
GTTTTGGAAAGTAGCAGTGACGTGATTTTAAACATAC
Found at i:49130404 original size:40 final size:40
Alignment explanation
Indices: 49130346--49130498 Score: 238
Period size: 40 Copynumber: 3.9 Consensus size: 40
49130336 TTATTTGATG
49130346 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
49130386 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
49130426 TGGAATTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
49130466 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
49130499 GCGCTAAATA
Statistics
Matches: 105, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.15
40 89 0.85
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:49134957 original size:21 final size:23
Alignment explanation
Indices: 49134915--49134957 Score: 54
Period size: 21 Copynumber: 1.9 Consensus size: 23
49134905 ATGCTCAGAT
*
49134915 TCATCACATGAATAAATCAAAATA
1 TCATCACATGAAT-AATAAAAATA
49134939 TCATCA-ATGAAT-ATAAAAA
1 TCATCACATGAATAATAAAAA
49134958 CAAATTGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
23 6 0.33
24 6 0.33
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.26
Consensus pattern (23 bp):
TCATCACATGAATAATAAAAATA
Found at i:49152449 original size:24 final size:24
Alignment explanation
Indices: 49152417--49152464 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
49152407 GTTTTGTGTA
*
49152417 ATAGGGACTACATTGTAAAAATTG
1 ATAGGGACTAAATTGTAAAAATTG
*
49152441 ATAGGGACTAAATTGTAGAAATTG
1 ATAGGGACTAAATTGTAAAAATTG
49152465 TAAATGTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAGGGACTAAATTGTAAAAATTG
Found at i:49159085 original size:42 final size:43
Alignment explanation
Indices: 49159018--49159143 Score: 109
Period size: 43 Copynumber: 2.9 Consensus size: 43
49159008 TTTGACATGT
* *
49159018 AATCATATATCGATGCCATTATCCCAGA-TAGCGTCTTACACG-A
1 AATCAAATATCGATGCCAATATCCCAGACT-G-GTCTTACACGTA
*
49159061 AATCAAATA-CGATGCCAATGTCCCAGACGTGGTCTTACACGTA
1 AATCAAATATCGATGCCAATATCCCAGAC-TGGTCTTACACGTA
* * * *
49159104 AATCATAA-GTCGATGCGAA-CTCCCAGATGTGGTCTTACAC
1 AATCA-AATATCGATGCCAATATCCCAGA-CTGGTCTTACAC
49159144 AAAAACACAT
Statistics
Matches: 70, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
42 26 0.37
43 33 0.47
44 11 0.16
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATATCCCAGACTGGTCTTACACGTA
Found at i:49159128 original size:43 final size:42
Alignment explanation
Indices: 49159050--49159143 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 42
49159040 CCCAGATAGC
*
49159050 GTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACGTG
1 GTCTTACACGAAATCAAATACGATGCCAATCTCCCAGACGTG
* *
49159092 GTCTTACACGTAAATCATAAGT-CGATGCGAA-CTCCCAGATGTG
1 GTCTTACACG-AAATCA-AA-TACGATGCCAATCTCCCAGACGTG
49159135 GTCTTACAC
1 GTCTTACAC
49159144 AAAAACACAT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
42 10 0.22
43 25 0.54
44 10 0.22
45 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GTCTTACACGAAATCAAATACGATGCCAATCTCCCAGACGTG
Found at i:49160954 original size:12 final size:13
Alignment explanation
Indices: 49160926--49160958 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
49160916 TTATTTCTTT
49160926 TTCTCCATCTACC
1 TTCTCCATCTACC
*
49160939 TTCTCC-TCTTCC
1 TTCTCCATCTACC
49160951 TTCTCCAT
1 TTCTCCAT
49160959 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:49162039 original size:28 final size:28
Alignment explanation
Indices: 49162007--49162071 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
49161997 ATTTACTAGA
*
49162007 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
49162035 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
49162063 ATACCCCTA
1 ATACCCCTA
49162072 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:49162236 original size:27 final size:27
Alignment explanation
Indices: 49162187--49162266 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
49162177 CTAGTGGCTA
* *
49162187 TGCCACAAATTATCTGTTTTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTGGTGGCAC
*
49162215 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTGGCAC
49162242 TGCCACAAAATATCTGTATCTGGTG
1 TGCCAC-AAATATCTGT-TCTGGTG
49162267 ACTCTGTCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 22 0.48
28 17 0.37
29 7 0.15
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGCAC
Found at i:49162277 original size:29 final size:28
Alignment explanation
Indices: 49162187--49162277 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
49162177 CTAGTGGCTA
* * * *
49162187 TGCCACAAATTATCTGTTTTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
49162215 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
49162242 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
49162271 TGTCACA
1 TGCCACA
49162278 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 15 0.28
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:49163708 original size:16 final size:16
Alignment explanation
Indices: 49163687--49163732 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
49163677 TTGTAACTCC
*
49163687 CCAAAAATCTCGAAAT
1 CCAAAAATCCCGAAAT
49163703 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
49163719 CCCAAAATCCCGAA
1 CCAAAAATCCCGAA
49163733 TTTTCTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.48, C:0.33, G:0.07, T:0.13
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:49165131 original size:29 final size:28
Alignment explanation
Indices: 49165073--49165185 Score: 109
Period size: 29 Copynumber: 4.0 Consensus size: 28
49165063 GTGAGCATCA
* * * *
49165073 ATATGAATGTGACTGGGCCTAACGGACC
1 ATATAAATGTGATTGGGCCTAATGGGCC
49165101 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
49165130 ATATACAGGTGATTTAGGCTTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
49165159 ATATGAATATGATTGGGCTTAATGGGC
1 ATATAAATGTGATTGGGCCTAATGGGC
49165186 TAGATACAGG
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 25 0.35
29 46 0.65
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:49168420 original size:29 final size:29
Alignment explanation
Indices: 49168378--49168450 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
49168368 GTGACAAGAT
49168378 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
49168407 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
49168436 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
49168451 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:49168469 original size:29 final size:29
Alignment explanation
Indices: 49168437--49168509 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
49168427 TGAAAAGTAT
* * *
49168437 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
49168466 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
49168495 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
49168510 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:49176374 original size:29 final size:29
Alignment explanation
Indices: 49176332--49176404 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
49176322 GTGACAAGAT
49176332 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
49176361 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
49176390 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
49176405 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:49176423 original size:29 final size:29
Alignment explanation
Indices: 49176391--49176463 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
49176381 TGAAAAGTAT
* * *
49176391 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
49176420 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
49176449 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
49176464 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:49182008 original size:47 final size:47
Alignment explanation
Indices: 49181954--49182279 Score: 492
Period size: 47 Copynumber: 7.0 Consensus size: 47
49181944 TTAGGATTTT
** *
49181954 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
49182001 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
49182048 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
49182095 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
49182142 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
49182189 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
49182236 ATGTGGTGAATATG-ACATACATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
49182280 TAGTGTGAAA
Statistics
Matches: 255, Mismatches: 24, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
46 25 0.10
47 230 0.90
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:49182056 original size:25 final size:25
Alignment explanation
Indices: 49181981--49182056 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
49181971 GTGTATATAT
49181981 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
49182006 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
49182028 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
49182053 GTGA
1 GTGA
49182057 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:49182183 original size:25 final size:25
Alignment explanation
Indices: 49182065--49182183 Score: 83
Period size: 22 Copynumber: 5.0 Consensus size: 25
49182055 GAATATGAAC
49182065 ATGCATATATGTGATAAGGCCGAAT
1 ATGCATATATGTGATAAGGCCGAAT
* * * * *
49182090 -GGC--CTATGTGATGAATG-TGAAC
1 ATGCATATATGTGAT-AAGGCCGAAT
49182112 ATGCATATATGTGATAAGGCCGAAT
1 ATGCATATATGTGATAAGGCCGAAT
* * * *
49182137 -GGC--CTATGTGATGAATG-TGAAT
1 ATGCATATATGTGAT-AAGGCCGAAT
49182159 ATGCATATATGTGATAAGGCCGAAT
1 ATGCATATATGTGATAAGGCCGAAT
49182184 GGCCAATGTG
Statistics
Matches: 66, Mismatches: 18, Indels: 20
0.63 0.17 0.19
Matches are distributed among these distances:
22 23 0.35
23 10 0.15
24 10 0.15
25 23 0.35
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGCATATATGTGATAAGGCCGAAT
Found at i:49182244 original size:25 final size:25
Alignment explanation
Indices: 49182169--49182244 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
49182159 ATGCATATAT
49182169 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
49182194 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
49182216 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
49182241 GTGA
1 GTGA
49182245 ATATGACATA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:49182587 original size:37 final size:37
Alignment explanation
Indices: 49182445--49182586 Score: 212
Period size: 37 Copynumber: 3.8 Consensus size: 37
49182435 AATATATTCT
* *
49182445 GGGTGAGACCCGATGACTACGTATGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
49182482 GGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* * *
49182519 GAGTAAGACCCGATGACTACGTTTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
49182556 GGGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
49182587 TCGTCTGAGC
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:49184117 original size:40 final size:40
Alignment explanation
Indices: 49183834--49184105 Score: 402
Period size: 40 Copynumber: 6.8 Consensus size: 40
49183824 GAGAATTGAG
* *
49183834 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
49183874 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
49183914 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
49183954 AGTGATGTATCCGGACTGAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
49183994 AGTGATGTATCTGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* **
49184034 AGTGATATATCCGTG-CTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCG-GACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
49184074 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
49184106 ATCATGCTGG
Statistics
Matches: 212, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 1 0.00
40 210 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:49186888 original size:29 final size:29
Alignment explanation
Indices: 49186788--49186880 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
49186778 GTGACGAGAT
*
49186788 TGGCACT-AGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
49186816 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
49186845 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
49186874 CGGCACT
1 TGGCACT
49186881 GGGTGTGCGA
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
28 7 0.11
29 54 0.89
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:49186905 original size:58 final size:58
Alignment explanation
Indices: 49186784--49186917 Score: 148
Period size: 58 Copynumber: 2.3 Consensus size: 58
49186774 TATGGTGACG
* * * *
49186784 AGAT-TGGCACT-AGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
49186840 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
49186898 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
49186918 GGGCTTAAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
56 3 0.05
57 7 0.11
58 53 0.83
59 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:49194393 original size:29 final size:29
Alignment explanation
Indices: 49194360--49194491 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
49194350 GTGACGAGAT
49194360 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
49194389 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
49194418 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
49194447 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
49194476 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
49194492 GGCTTAAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:49200243 original size:27 final size:27
Alignment explanation
Indices: 49200204--49200329 Score: 159
Period size: 27 Copynumber: 4.7 Consensus size: 27
49200194 CTTAGATTGT
*
49200204 AAAATTACCGAAATACCCCCAGTTTGG
1 AAAATTACTGAAATACCCCCAGTTTGG
*
49200231 AAAATTACTGAAATACCCTC-GATTTGG
1 AAAATTACTGAAATACCCCCAG-TTTGG
* *
49200258 AAAATTACCGAAATACCTCCAGTTTGG
1 AAAATTACTGAAATACCCCCAGTTTGG
*
49200285 AAAATTA-TCGAAATACCCCCAGTTTAG
1 AAAATTACT-GAAATACCCCCAGTTTGG
49200312 AAAATTA-TCGAAATACCC
1 AAAATTACT-GAAATACCC
49200330 TGGTTGTATA
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
26 1 0.01
27 86 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25
Consensus pattern (27 bp):
AAAATTACTGAAATACCCCCAGTTTGG
Found at i:49200286 original size:54 final size:54
Alignment explanation
Indices: 49200204--49200329 Score: 184
Period size: 54 Copynumber: 2.3 Consensus size: 54
49200194 CTTAGATTGT
* *
49200204 AAAATTACCGAAATACCCCCAGTTTGGAAAATTA-CTGAAATACCCTC-GATTTGG
1 AAAATTACCGAAATACCCCCAGTTTGGAAAATTATC-GAAATACCCCCAG-TTTAG
*
49200258 AAAATTACCGAAATACCTCCAGTTTGGAAAATTATCGAAATACCCCCAGTTTAG
1 AAAATTACCGAAATACCCCCAGTTTGGAAAATTATCGAAATACCCCCAGTTTAG
*
49200312 AAAATTATCGAAATACCC
1 AAAATTACCGAAATACCC
49200330 TGGTTGTATA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
54 63 0.97
55 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25
Consensus pattern (54 bp):
AAAATTACCGAAATACCCCCAGTTTGGAAAATTATCGAAATACCCCCAGTTTAG
Found at i:49200368 original size:27 final size:27
Alignment explanation
Indices: 49200338--49200420 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 27
49200328 CCTGGTTGTA
* *
49200338 TAAAATGACCGTAGTACCCTTGTAGGG
1 TAAAATGACCGTAGTACCCATGTAAGG
* * *
49200365 TAAAATAACCAT-GATGCCCATGTAAGG
1 TAAAATGACCGTAG-TACCCATGTAAGG
* * *
49200392 TAAAATGACCGTAATACCCCTGTATGG
1 TAAAATGACCGTAGTACCCATGTAAGG
49200419 TA
1 TA
49200421 GAATAATGAT
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
TAAAATGACCGTAGTACCCATGTAAGG
Found at i:49200370 original size:81 final size:82
Alignment explanation
Indices: 49200202--49200370 Score: 184
Period size: 81 Copynumber: 2.1 Consensus size: 82
49200192 ACCTTAGATT
* * *
49200202 GTAAAATTACCGAAATACCCCCAGTTTGGAAAATTACTGAAATACCCTCGATTTGGAAAATTACC
1 GTAAAATTACCGAAATACCCCCAGTTTAGAAAATTACTGAAATACCCTCGATTTAGAAAATGACC
**
49200267 GAAATACCTCCAGTTTG
66 GAAATACCTCCAGTAGG
* * *
49200284 G-AAAATTATCGAAATACCCCCAGTTTAGAAAATTA-TCGAAATACCCT-GGTTGTATAAAATGA
1 GTAAAATTACCGAAATACCCCCAGTTTAGAAAATTACT-GAAATACCCTCGATT-TAGAAAATGA
* * **
49200346 CCGTAGTACC-CTTGTAGG
64 CCGAAATACCTCCAGTAGG
49200364 GTAAAAT
1 GTAAAAT
49200371 AACCATGATG
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
80 9 0.12
81 62 0.86
82 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (82 bp):
GTAAAATTACCGAAATACCCCCAGTTTAGAAAATTACTGAAATACCCTCGATTTAGAAAATGACC
GAAATACCTCCAGTAGG
Found at i:49205031 original size:2 final size:2
Alignment explanation
Indices: 49205024--49205048 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49205014 TTTGGCCACA
49205024 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
49205049 CATCTCATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:49205117 original size:46 final size:46
Alignment explanation
Indices: 49205050--49205230 Score: 140
Period size: 47 Copynumber: 3.9 Consensus size: 46
49205040 ATATATATAC
* * *
49205050 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
49205096 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
49205142 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGC-
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATAT-CT
* * *
49205191 ATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
49205231 CATACGCATG
Statistics
Matches: 114, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
45 10 0.09
46 43 0.38
47 50 0.44
48 2 0.02
49 9 0.08
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:49205175 original size:47 final size:47
Alignment explanation
Indices: 49205113--49205375 Score: 445
Period size: 47 Copynumber: 5.6 Consensus size: 47
49205103 ACACATTTCG
* * * *
49205113 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
**
49205160 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
49205207 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
49205254 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
49205301 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
49205348 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
49205376 TATATACAGG
Statistics
Matches: 209, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 209 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:49205277 original size:22 final size:22
Alignment explanation
Indices: 49205156--49205230 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
49205146 GTTCACATTC
49205156 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
49205178 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
49205202 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
49205225 ATCACA
1 ATCACA
49205231 CATACGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:49228631 original size:20 final size:21
Alignment explanation
Indices: 49228595--49228642 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
49228585 ATTTTGATAT
*
49228595 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
49228616 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
49228636 ACATGAT
1 ACATGAT
49228643 GTATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:49228794 original size:23 final size:23
Alignment explanation
Indices: 49228715--49228788 Score: 112
Period size: 23 Copynumber: 3.1 Consensus size: 23
49228705 TAGTTTACCG
* *
49228715 AAAAGAGCTTTGCCCCAGTGTATCA
1 AAAAGGGCTTTG-CCCAGT-TATTA
49228740 AAAAGGGCTTTGCCCAGTTATTA
1 AAAAGGGCTTTGCCCAGTTATTA
49228763 AAAAGGGCTTTGCCCAGTTATTA
1 AAAAGGGCTTTGCCCAGTTATTA
49228786 AAA
1 AAA
49228789 GAGGCTAGGC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 30 0.64
24 6 0.13
25 11 0.23
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCAGTTATTA
Found at i:49231671 original size:29 final size:28
Alignment explanation
Indices: 49231611--49231694 Score: 96
Period size: 29 Copynumber: 3.0 Consensus size: 28
49231601 CTTGTATCTG
* * * **
49231611 GCCCATTAAGCCCAATCATATTCATACG
1 GCCCATTAGGCCTAATCACATTCATATA
*
49231639 GCCCATTAGGCCTAAATCACATTTATATA
1 GCCCATTAGGCCT-AATCACATTCATATA
*
49231668 GCCCATTAGGCCTAGTCACATTCATAT
1 GCCCATTAGGCCTAATCACATTCATAT
49231695 TCATGCTCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 23 0.49
29 24 0.51
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.29
Consensus pattern (28 bp):
GCCCATTAGGCCTAATCACATTCATATA
Found at i:49231925 original size:16 final size:16
Alignment explanation
Indices: 49231904--49231962 Score: 100
Period size: 16 Copynumber: 3.7 Consensus size: 16
49231894 GTATCCAAAC
49231904 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCGGCA
*
49231920 TTTTGGCATTTCGGCA
1 TTTTGGCTTTTCGGCA
49231936 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCGGCA
*
49231952 TTTCGGCTTTT
1 TTTTGGCTTTT
49231963 GCCGATACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.07, C:0.19, G:0.24, T:0.51
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:49231929 original size:8 final size:8
Alignment explanation
Indices: 49231904--49231963 Score: 63
Period size: 8 Copynumber: 7.6 Consensus size: 8
49231894 GTATCCAAAC
49231904 TTTTGGC-
1 TTTTGGCA
49231911 TTTTCGGCA
1 TTTT-GGCA
49231920 TTTTGGCA
1 TTTTGGCA
*
49231928 TTTCGGCA
1 TTTTGGCA
49231936 TTTTGGC-
1 TTTTGGCA
49231943 TTTTCGGCA
1 TTTT-GGCA
*
49231952 TTTCGGC-
1 TTTTGGCA
49231959 TTTTG
1 TTTTG
49231964 CCGATACATA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
7 12 0.27
8 26 0.58
9 7 0.16
ACGTcount: A:0.07, C:0.18, G:0.25, T:0.50
Consensus pattern (8 bp):
TTTTGGCA
Found at i:49233791 original size:46 final size:46
Alignment explanation
Indices: 49233716--49233844 Score: 177
Period size: 46 Copynumber: 2.8 Consensus size: 46
49233706 TGTAACCCGC
* * * *
49233716 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* * * **
49233762 CCCTGAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
49233808 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49233845 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:49236206 original size:15 final size:15
Alignment explanation
Indices: 49236180--49236235 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
49236170 CAAGGAAATC
49236180 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
49236195 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
*
49236210 GAATAAAGTAATCCA
1 GAATAAAGAAATCCA
49236225 GAATAAAGAAA
1 GAATAAAGAAA
49236236 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.59, C:0.11, G:0.16, T:0.14
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:49237474 original size:17 final size:17
Alignment explanation
Indices: 49237452--49237491 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
49237442 TACACTACAT
49237452 CATATGAACATTAAGCA
1 CATATGAACATTAAGCA
* * *
49237469 CATATGAATATTTATCA
1 CATATGAACATTAAGCA
49237486 CATATG
1 CATATG
49237492 TATCATAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (17 bp):
CATATGAACATTAAGCA
Found at i:49239116 original size:46 final size:46
Alignment explanation
Indices: 49239041--49239169 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
49239031 TGTAACCCGC
* * *
49239041 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
49239087 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
49239133 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49239170 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:49243758 original size:28 final size:28
Alignment explanation
Indices: 49243715--49243830 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
49243705 AGCATGGCTG
* *
49243715 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* * *
49243741 CCAGATAGAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
*
49243769 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* *
49243797 CTAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
49243825 CCAGAA
1 CCAGAA
49243831 TGCTTCCTCC
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.05
27 5 0.06
28 68 0.88
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGGCAGAGCCA
Found at i:49245058 original size:18 final size:18
Alignment explanation
Indices: 49245002--49245058 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
49244992 GGCTATAGAG
49245002 GAAAAGAAGAAGAAGAGAA
1 GAAAAGAAGAAG-AGAGAA
* * *
49245021 -AATAGATGAAGAGAGGA
1 GAAAAGAAGAAGAGAGAA
*
49245038 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
49245056 GAA
1 GAA
49245059 TTGTCAGAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:49246935 original size:8 final size:8
Alignment explanation
Indices: 49246922--49246946 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
49246912 AGTCCCTTGT
49246922 TCACAAAA
1 TCACAAAA
49246930 TCACAAAA
1 TCACAAAA
49246938 TCACAAAA
1 TCACAAAA
49246946 T
1 T
49246947 ACTCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.16
Consensus pattern (8 bp):
TCACAAAA
Found at i:49260919 original size:27 final size:26
Alignment explanation
Indices: 49260863--49260919 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
49260853 CAACCTTAAC
* * *
49260863 CCTAGGGGTATATTAGTAATTTTGCT
1 CCTAGGGGTAAATTAGTAATTTTCCA
49260889 CCTAGGGGTAAATCT-GTAAATTTTCCA
1 CCTAGGGGTAAAT-TAGT-AATTTTCCA
49260916 CCTA
1 CCTA
49260920 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATTAGTAATTTTCCA
Found at i:49263309 original size:18 final size:17
Alignment explanation
Indices: 49263286--49263319 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
49263276 TAGCTGTGCC
49263286 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
49263304 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
49263320 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:49264468 original size:24 final size:25
Alignment explanation
Indices: 49264437--49264483 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
49264427 TTCTAATATG
* *
49264437 AAAATGACCGTT-TGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
49264461 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
49264484 GTTTATACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:49264549 original size:20 final size:20
Alignment explanation
Indices: 49264520--49264566 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
49264510 ATTTTGATAA
* * *
49264520 ACATGGTATGTATGATATGC
1 ACATGATATGAATGACATGC
49264540 ACATGATATGAATGACATGC
1 ACATGATATGAATGACATGC
49264560 ACATGAT
1 ACATGAT
49264567 GTATTTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGAATGACATGC
Found at i:49264660 original size:24 final size:24
Alignment explanation
Indices: 49264615--49264756 Score: 220
Period size: 24 Copynumber: 6.0 Consensus size: 24
49264605 GAGGAAGTGC
49264615 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
49264638 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
49264662 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
49264686 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
49264709 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
49264733 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
49264757 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 1, Indels: 10
0.91 0.01 0.08
Matches are distributed among these distances:
23 42 0.38
24 53 0.47
25 17 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:49264690 original size:47 final size:48
Alignment explanation
Indices: 49264615--49264735 Score: 212
Period size: 47 Copynumber: 2.6 Consensus size: 48
49264605 GAGGAAGTGC
49264615 AAAAGGGCTTATG-CCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTA
49264662 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
49264710 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
49264736 AGAGGCTAGG
Statistics
Matches: 72, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
47 52 0.72
48 20 0.28
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
Found at i:49264983 original size:31 final size:31
Alignment explanation
Indices: 49264948--49265011 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
49264938 CGTTTACAGT
49264948 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
49264979 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
49265010 AA
1 AA
49265012 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:49271213 original size:40 final size:40
Alignment explanation
Indices: 49271154--49271346 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 40
49271144 CAATTGAATG
* * * *
49271154 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
49271194 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * * **
49271234 ACATCCGGGCTAAGACCCGGAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
49271274 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* *
49271314 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
49271347 TGTGGTTATA
Statistics
Matches: 126, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:49271297 original size:80 final size:80
Alignment explanation
Indices: 49271156--49271346 Score: 215
Period size: 80 Copynumber: 2.4 Consensus size: 80
49271146 ATTGAATGAT
* * ** * ** * *
49271156 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-CAT
*
49271220 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* *
49271236 ATCCGGGCTAAGACCCGGAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATT
** *
49271301 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
49271316 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
49271347 TGTGGTTATA
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 2 0.02
80 89 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:49273861 original size:18 final size:17
Alignment explanation
Indices: 49273838--49273871 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
49273828 TAGCTGTGCC
49273838 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
49273856 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
49273872 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:49275021 original size:25 final size:25
Alignment explanation
Indices: 49274992--49275039 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
49274982 TTCTAATATG
* * *
49274992 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
49275017 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
49275040 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:49275122 original size:11 final size:11
Alignment explanation
Indices: 49275086--49275141 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
49275076 CATGGTATGT
49275086 ATGATATGCAC
1 ATGATATGCAC
* *
49275097 ATGACATG--T
1 ATGATATGCAC
49275106 ATGATATGCAC
1 ATGATATGCAC
49275117 ATGATATG-A-
1 ATGATATGCAC
*
49275126 ATGACATGCAC
1 ATGATATGCAC
49275137 ATGAT
1 ATGAT
49275142 GTATTTATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:49275141 original size:20 final size:20
Alignment explanation
Indices: 49275075--49275141 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
49275065 GTTTTGATAA
*
49275075 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
49275095 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
49275115 ACATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
49275135 ACATGAT
1 ACATGAT
49275142 GTATTTATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:49275329 original size:25 final size:24
Alignment explanation
Indices: 49275190--49275333 Score: 213
Period size: 24 Copynumber: 6.0 Consensus size: 24
49275180 GAGGAAGTGC
*
49275190 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
49275214 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
49275238 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
49275262 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
49275285 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
49275310 AAAAGAGG-TTAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
49275334 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 2, Indels: 11
0.90 0.02 0.09
Matches are distributed among these distances:
23 30 0.27
24 52 0.46
25 21 0.19
26 9 0.08
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:49275569 original size:31 final size:31
Alignment explanation
Indices: 49275526--49275589 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
49275516 CGTTTACAGT
*
49275526 AAAGTCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
49275557 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
49275588 AA
1 AA
49275590 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:49276456 original size:19 final size:18
Alignment explanation
Indices: 49276419--49276462 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
49276409 ATACATACAG
49276419 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
49276436 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
49276455 TACTAATT
1 TAATAATT
49276463 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:49280748 original size:24 final size:24
Alignment explanation
Indices: 49280721--49280768 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
49280711 TAGTGAATAT
49280721 ATATATGAG-GTTATAATATGGTTA
1 ATATATGAGTGTT-TAATATGGTTA
* *
49280745 ATATATGTGTGTTTGATATGGTTA
1 ATATATGAGTGTTTAATATGGTTA
49280769 GATTGAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (24 bp):
ATATATGAGTGTTTAATATGGTTA
Found at i:49281338 original size:13 final size:13
Alignment explanation
Indices: 49281320--49281348 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
49281310 GGTTGTTCAT
49281320 TAAACTAATTAAC
1 TAAACTAATTAAC
49281333 TAAACTAATTAAC
1 TAAACTAATTAAC
49281346 TAA
1 TAA
49281349 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:49285678 original size:174 final size:174
Alignment explanation
Indices: 49285388--49285737 Score: 592
Period size: 174 Copynumber: 2.0 Consensus size: 174
49285378 CCTACGAAGC
*
49285388 TTGCAAAAACTCAAGGAACGGGTGCCGAACTTCAGCTGTAGCACGTACAGAGGAAGAACCTAATC
1 TTGCAAAAACTCAAGGAACGGGTGCCGAACTTCAGCTGTAGCACGTACAGAGGAAGAACCCAATC
* * *
49285453 CCCTACGTCTCGTTGAGGATGGGACCGCGGCCTTCTTGCCTCTCGATGATGACATAATGTACTTG
66 CCCTACGTCTCGTTGAGGATGAGACCACGGACTTCTTGCCTCTCGATGATGACATAATGTACTTG
*
49285518 AATATGTATGAGCATTGATAAAGTAGGTCTAACATGTGTTAACA
131 AATATGTATGAGCATTGATAAAGTAGGTCCAACATGTGTTAACA
* **
49285562 TTGCAAAAACTCAAGGAACGGGTGCCGAACTTCAGTTGTAGCACGTACAGAGGAAGAACCCGGTC
1 TTGCAAAAACTCAAGGAACGGGTGCCGAACTTCAGCTGTAGCACGTACAGAGGAAGAACCCAATC
* *
49285627 CCCTACGTCTCTTTGAGGATGAGACCATGGACTTCTTGCCTCTCGATGATGACATAATGTACTTG
66 CCCTACGTCTCGTTGAGGATGAGACCACGGACTTCTTGCCTCTCGATGATGACATAATGTACTTG
* *
49285692 AATATGTATGAGCATTGATATAGTAGGTCCAAGATGTGTTAACA
131 AATATGTATGAGCATTGATAAAGTAGGTCCAACATGTGTTAACA
49285736 TT
1 TT
49285738 TAACTAAATC
Statistics
Matches: 164, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
174 164 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (174 bp):
TTGCAAAAACTCAAGGAACGGGTGCCGAACTTCAGCTGTAGCACGTACAGAGGAAGAACCCAATC
CCCTACGTCTCGTTGAGGATGAGACCACGGACTTCTTGCCTCTCGATGATGACATAATGTACTTG
AATATGTATGAGCATTGATAAAGTAGGTCCAACATGTGTTAACA
Found at i:49286757 original size:14 final size:14
Alignment explanation
Indices: 49286718--49286758 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
49286708 TTAAAGTGTT
49286718 AGAAATAAAAATAA
1 AGAAATAAAAATAA
49286732 A-AAATAAAAAATAA
1 AGAAAT-AAAAATAA
*
49286746 AGAAATCAAAATA
1 AGAAATAAAAATA
49286759 TGTTAGTGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 4 0.17
14 16 0.67
15 4 0.17
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (14 bp):
AGAAATAAAAATAA
Found at i:49289798 original size:13 final size:13
Alignment explanation
Indices: 49289780--49289808 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
49289770 GGTTGTTCAT
49289780 TAAACTAATTAAC
1 TAAACTAATTAAC
49289793 TAAACTAATTAAC
1 TAAACTAATTAAC
49289806 TAA
1 TAA
49289809 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:49290875 original size:10 final size:10
Alignment explanation
Indices: 49290843--49290876 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
49290833 CGTTTTGTCC
49290843 CTTTTTGGCT
1 CTTTTTGGCT
49290853 CATTTTTGGCT
1 C-TTTTTGGCT
*
49290864 CTTTTTGACT
1 CTTTTTGGCT
49290874 CTT
1 CTT
49290877 GGTGCTCTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.06, C:0.21, G:0.15, T:0.59
Consensus pattern (10 bp):
CTTTTTGGCT
Found at i:49296602 original size:48 final size:48
Alignment explanation
Indices: 49296550--49296646 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
49296540 TCATTTTACA
49296550 TAACCACAACTCTCATTCCAACAATCATAGTAATCTAACATGGAATCC
1 TAACCACAACTCTCATTCCAACAATCATAGTAATCTAACATGGAATCC
* * *
49296598 TAACCACAACTCTCATTCCAATAATCTTAGTAATCTGACATGGAATCC
1 TAACCACAACTCTCATTCCAACAATCATAGTAATCTAACATGGAATCC
49296646 T
1 T
49296647 TATTCACTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.37, C:0.28, G:0.07, T:0.28
Consensus pattern (48 bp):
TAACCACAACTCTCATTCCAACAATCATAGTAATCTAACATGGAATCC
Found at i:49297160 original size:28 final size:28
Alignment explanation
Indices: 49297129--49297249 Score: 170
Period size: 28 Copynumber: 4.3 Consensus size: 28
49297119 TCTTGATGGG
* *
49297129 CTTCCACATTTAGGATAGTCCTGACAAA
1 CTTCCACATATAAGATAGTCCTGACAAA
* *
49297157 CTTCCATATATAAGATAGTCCTGACAGA
1 CTTCCACATATAAGATAGTCCTGACAAA
* **
49297185 CTTCAACATATAAGATAGTCCTGACGGA
1 CTTCCACATATAAGATAGTCCTGACAAA
*
49297213 CTTCCACATATAAGATAGTCTTGACAAA
1 CTTCCACATATAAGATAGTCCTGACAAA
49297241 CTTCCACAT
1 CTTCCACAT
49297250 TTATGGTAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 82 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (28 bp):
CTTCCACATATAAGATAGTCCTGACAAA
Found at i:49298608 original size:16 final size:16
Alignment explanation
Indices: 49298583--49298634 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
49298573 CTGTCGTGTG
*
49298583 AGCTCGTCAGTTTACA
1 AGCTCATCAGTTTACA
49298599 AGCTCATCAGTTTA-A
1 AGCTCATCAGTTTACA
* * *
49298614 GTGCTCCTTAGTTTACA
1 -AGCTCATCAGTTTACA
49298631 AGCT
1 AGCT
49298635 AGTCTATTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (16 bp):
AGCTCATCAGTTTACA
Found at i:49300853 original size:28 final size:28
Alignment explanation
Indices: 49300784--49300884 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
49300774 GACAAGATTG
* * * *
49300784 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
49300814 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
49300842 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
49300871 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49300885 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:49307534 original size:39 final size:39
Alignment explanation
Indices: 49307424--49307600 Score: 135
Period size: 39 Copynumber: 4.5 Consensus size: 39
49307414 GAATCACGTA
* * * *
49307424 CCTTCGGATCTTA-TCCGGATATAGCG-ACTCGCTCAAAAG
1 CCTTCGGA-CTTAGCCCGGATAT-GGGAACTCGCACAAATG
* * *** *
49307463 CCTTCGGGACATAGCCCGGTTATAATAGCTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATGGGAACTCGCACAAATG
* *
49307503 CCTTCGGACTTAACCCGGATTTGGGAACTCGCACAAATG
1 CCTTCGGACTTAGCCCGGATATGGGAACTCGCACAAATG
* ** *
49307542 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGA-CTTAGCCCGGATATGGGAAC-TCGCACAAATG
*
49307582 CCTTCGAACTTAGCCCGGA
1 CCTTCGGACTTAGCCCGGA
49307601 CATCATTCGA
Statistics
Matches: 108, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
39 52 0.48
40 48 0.44
41 8 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGACTTAGCCCGGATATGGGAACTCGCACAAATG
Found at i:49315508 original size:40 final size:40
Alignment explanation
Indices: 49315452--49315551 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
49315442 GGATATAGCG
* * * *
49315452 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAAGA
* * **
49315492 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
49315532 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
49315552 ATGTTAGTCC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 48 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
Done.