Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 178 of 345
Found at i:50251678 original size:40 final size:40
Alignment explanation
Indices: 50251623--50251900 Score: 457
Period size: 40 Copynumber: 7.0 Consensus size: 40
50251613 TGGGGTGTTA
* * * *
50251623 CACGAATGCTCTTCGGGACTTAGTCCGGTTGCATTACTAG
1 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
50251663 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
1 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
* * * *
50251703 CACGAATGCTCTTCGGGACTTAGTCCGGTTGCATTACTAG
1 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
*
50251743 CACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAG
1 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
* *
50251783 CACGAATTCTCTTTGGAACTTAGTCCGGATACATCACTAG
1 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
50251823 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
1 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
50251863 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACT
1 CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACT
50251901 CTCAATTCTC
Statistics
Matches: 220, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 220 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAG
Found at i:50254102 original size:25 final size:25
Alignment explanation
Indices: 50254074--50254152 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
50254064 ACTCGGCCCT
*
50254074 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
50254099 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
50254121 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
50254146 ATCACAT
1 ATCACAT
50254153 GGCCATTAGG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:50254225 original size:49 final size:49
Alignment explanation
Indices: 50254024--50254325 Score: 433
Period size: 47 Copynumber: 6.3 Consensus size: 49
50254014 CCCTTCGGGA
* * * * * *
50254024 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50254071 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50254118 CTTATCAC--ATATATACACCTTCACATTCATCACAT-GGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50254164 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50254213 CTTATCACATATATACACACTTTCACATT--TCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50254260 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50254309 CTTATCACATATATATA
1 CTTATCACATATATATA
50254326 TCTCATACAT
Statistics
Matches: 237, Mismatches: 11, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
46 19 0.08
47 119 0.50
48 26 0.11
49 73 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50254295 original size:96 final size:93
Alignment explanation
Indices: 50254024--50254323 Score: 426
Period size: 96 Copynumber: 3.2 Consensus size: 93
50254014 CCCTTCGGGA
* * * * * *
50254024 CTTATCACATTTATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATAT-AC
1 CTTATCACATATATACACCTT-CACAT-TATCAC-ATGGCCATTAGGCCTTATCACATATATAAC
* *
50254087 ACTTTCACATTCATCACATTGGCCATTCGGC
63 ACTTTCACATTCATCACATCGGCCATTAGGC
50254118 CTTATCACATATATACACCTTCACATTCATCACATGGCCATTAGGCCTTATCACATATATATACA
1 CTTATCACATATATACACCTTCACATT-ATCACATGGCCATTAGGCCTTATCACATATATA-ACA
50254183 CTTTCACATTCATCACATCGGCCATTAGGC
64 CTTTCACATTCATCACATCGGCCATTAGGC
50254213 CTTATCACATATATACACACTTTCACATT-TCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATACAC-C-TTCACATTATCACAT-GGCCATTAGGCCTTATCACATATATA-A
50254277 CACTTTCACATTCATCACATCGGCCATTAGGC
62 CACTTTCACATTCATCACATCGGCCATTAGGC
50254309 CTTATCACATATATA
1 CTTATCACATATATA
50254324 TATCTCATAC
Statistics
Matches: 190, Mismatches: 9, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
93 23 0.12
94 26 0.14
95 58 0.31
96 75 0.39
97 8 0.04
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATACACCTTCACATTATCACATGGCCATTAGGCCTTATCACATATATAACACT
TTCACATTCATCACATCGGCCATTAGGC
Found at i:50268051 original size:15 final size:15
Alignment explanation
Indices: 50268027--50268058 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50268017 GTCTTATAAC
*
50268027 AAGTTGAATAACAAT
1 AAGTTAAATAACAAT
50268042 AAGTTAAATAACAAT
1 AAGTTAAATAACAAT
50268057 AA
1 AA
50268059 CACATACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.25
Consensus pattern (15 bp):
AAGTTAAATAACAAT
Found at i:50286602 original size:20 final size:20
Alignment explanation
Indices: 50286577--50286635 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
50286567 TAAATATGGT
50286577 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
50286597 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
50286617 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50286636 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:50286617 original size:11 final size:11
Alignment explanation
Indices: 50286581--50286635 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50286571 TATGGTATGT
50286581 ATGATATGCAC
1 ATGATATGCAC
* *
50286592 ATGAAATG--T
1 ATGATATGCAC
50286601 ATGATATGCAC
1 ATGATATGCAC
*
50286612 ATGATATG--T
1 ATGATATGCAC
50286621 ATGATATGCAC
1 ATGATATGCAC
50286632 ATGA
1 ATGA
50286636 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50286754 original size:23 final size:23
Alignment explanation
Indices: 50286686--50286851 Score: 237
Period size: 24 Copynumber: 7.0 Consensus size: 23
50286676 GAGGAAGTGA
50286686 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
50286709 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
50286733 CAAAAGGGCTTATG-CCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
50286756 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
50286779 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
50286803 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
50286827 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50286851 A
1 A
50286852 TGATAAAGCA
Statistics
Matches: 133, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
22 13 0.10
23 40 0.30
24 70 0.53
25 10 0.08
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:50287077 original size:31 final size:31
Alignment explanation
Indices: 50287042--50287136 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
50287032 CGTTTACAGT
50287042 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50287073 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50287104 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50287135 AA
1 AA
50287137 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50294696 original size:25 final size:25
Alignment explanation
Indices: 50294668--50294715 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50294658 TTATACCATG
* * *
50294668 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50294693 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50294716 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50294784 original size:20 final size:20
Alignment explanation
Indices: 50294759--50294817 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
50294749 TAAATATGGT
50294759 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
50294779 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
50294799 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50294818 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:50294799 original size:11 final size:11
Alignment explanation
Indices: 50294763--50294817 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50294753 TATGGTATGT
50294763 ATGATATGCAC
1 ATGATATGCAC
* *
50294774 ATGAAATG--T
1 ATGATATGCAC
50294783 ATGATATGCAC
1 ATGATATGCAC
*
50294794 ATGATATG--T
1 ATGATATGCAC
50294803 ATGATATGCAC
1 ATGATATGCAC
50294814 ATGA
1 ATGA
50294818 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50294895 original size:24 final size:24
Alignment explanation
Indices: 50294868--50295010 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
50294858 GAGGAAGTGA
50294868 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50294892 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50294916 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
50294939 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
50294963 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
50294987 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50295011 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:50294961 original size:47 final size:47
Alignment explanation
Indices: 50294868--50295010 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
50294858 GAGGAAGTGA
50294868 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
50294916 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
50294963 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
50295011 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:50294984 original size:71 final size:72
Alignment explanation
Indices: 50294868--50295011 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
50294858 GAGGAAGTGA
*
50294868 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
50294931 CCAGTTAT
65 CCAGTTAT
** * *
50294939 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
50295004 CAGTTAT
66 CAGTTAT
50295011 A
1 A
50295012 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:50295237 original size:31 final size:31
Alignment explanation
Indices: 50295202--50295296 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
50295192 CGTTTACAGT
50295202 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50295233 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
50295264 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50295295 AA
1 AA
50295297 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50305303 original size:40 final size:39
Alignment explanation
Indices: 50305258--50305355 Score: 99
Period size: 39 Copynumber: 2.4 Consensus size: 39
50305248 AAATCAGCTA
*
50305258 TATATATGGTATCTAGTGTGCGA-TTCAACATAGCTTCGAC
1 TATATATGG-AT-TAGTGTGCGAGATCAACATAGCTTCGAC
* * * * *
50305298 TATATATGGCTTAGTGTGTGAGATCGAGATAGCTTCGGC
1 TATATATGGATTAGTGTGCGAGATCAACATAGCTTCGAC
50305337 TATATATGGCACTTAGTGT
1 TATATATGG-A-TTAGTGT
50305356 ATGATTTGGG
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 9 0.19
39 23 0.48
40 9 0.19
41 7 0.15
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (39 bp):
TATATATGGATTAGTGTGCGAGATCAACATAGCTTCGAC
Found at i:50306158 original size:24 final size:24
Alignment explanation
Indices: 50306130--50306190 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 24
50306120 TGTTTATGGC
50306130 TAAATTGGATG-TTTATTTATATTA
1 TAAATTGG-TGCTTTATTTATATTA
50306154 TAAATTGGTGCCATTTTATTTATATTA
1 TAAATTGGTG-C--TTTATTTATATTA
50306181 TAAATTGGTG
1 TAAATTGGTG
50306191 TCATTTTGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
23 2 0.06
24 8 0.24
27 23 0.70
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (24 bp):
TAAATTGGTGCTTTATTTATATTA
Found at i:50306175 original size:27 final size:27
Alignment explanation
Indices: 50306141--50306197 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
50306131 AAATTGGATG
50306141 TTTATTTATATTATAAATTGGTGCCAT
1 TTTATTTATATTATAAATTGGTGCCAT
*
50306168 TTTATTTATATTATAAATTGGTGTCAT
1 TTTATTTATATTATAAATTGGTGCCAT
50306195 TTT
1 TTT
50306198 GGTTGTTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.05, G:0.11, T:0.56
Consensus pattern (27 bp):
TTTATTTATATTATAAATTGGTGCCAT
Found at i:50312369 original size:27 final size:27
Alignment explanation
Indices: 50312335--50312534 Score: 267
Period size: 27 Copynumber: 7.4 Consensus size: 27
50312325 TGGATAAGTT
* *
50312335 GTAGAATTACGGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
50312362 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* ** *
50312389 GTAAAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
50312416 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
50312443 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
50312470 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
50312497 GTAGAATTACTGAGATACCCTTGT-GTG
1 GTAGAATTACCGAAATACCCCTGTAG-G
*
50312524 GTAAAATTACC
1 GTAGAATTACC
50312535 ATTTTGCCCC
Statistics
Matches: 151, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.01
27 150 0.99
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:50313277 original size:2 final size:2
Alignment explanation
Indices: 50313272--50313303 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
50313262 TTTGCCACAC
50313272 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50313304 TCTGGTGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50313358 original size:91 final size:91
Alignment explanation
Indices: 50313203--50313372 Score: 277
Period size: 91 Copynumber: 1.9 Consensus size: 91
50313193 GCCTCGCCAC
* *
50313203 ATATATCTATTCTAGTGACTTCGTCACAATATCTGACAGCCTCGCTGCAATCTGGTGGCTTTGCC
1 ATATATATATTCTAGTGACTTCGTCACAATATCTGACAACCTCGCTGCAATCTGGTGGCTTTGCC
50313268 ACACATATATATATATATATATATAT
66 ACACATATATATATATATATATATAT
* * * *
50313294 ATATATATATTCTGGTGACTTCGTCACAATATCTGGCAACTTCGCTGCAATTTGGTGGCTTTGCC
1 ATATATATATTCTAGTGACTTCGTCACAATATCTGACAACCTCGCTGCAATCTGGTGGCTTTGCC
*
50313359 ACATATATATATAT
66 ACACATATATATAT
50313373 CTGTTCTGGT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 72 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (91 bp):
ATATATATATTCTAGTGACTTCGTCACAATATCTGACAACCTCGCTGCAATCTGGTGGCTTTGCC
ACACATATATATATATATATATATAT
Found at i:50313393 original size:33 final size:32
Alignment explanation
Indices: 50313346--50313407 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
50313336 CGCTGCAATT
* *
50313346 TGGTGGCTTTGCCACATATATATATATCTGTTC
1 TGGTGGCCTAGCCACA-ATATATATATCTGTTC
* *
50313379 TGGTGGCCTAGCCACAATATCTGTATCTG
1 TGGTGGCCTAGCCACAATATATATATCTG
50313408 GTGACTTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 11 0.44
33 14 0.56
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (32 bp):
TGGTGGCCTAGCCACAATATATATATCTGTTC
Found at i:50313421 original size:27 final size:26
Alignment explanation
Indices: 50313369--50313428 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50313359 ACATATATAT
*
50313369 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
50313395 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
50313422 ATATCTG
1 ATATCTG
50313429 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:50317474 original size:40 final size:39
Alignment explanation
Indices: 50317306--50317476 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
50317296 AGAAATTGAA
* *
50317306 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
50317346 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
50317386 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
50317426 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
50317466 TGATATCCGGG
1 TGATATCCGGG
50317477 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:50325509 original size:40 final size:39
Alignment explanation
Indices: 50325341--50325511 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
50325331 AGAAATTGAA
* *
50325341 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
50325381 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
50325421 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
50325461 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
50325501 TGATATCCGGG
1 TGATATCCGGG
50325512 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:50330696 original size:27 final size:27
Alignment explanation
Indices: 50330663--50330833 Score: 177
Period size: 27 Copynumber: 6.4 Consensus size: 27
50330653 TCGATAAGTT
*
50330663 GTAGAATTACCGAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTATAGG
*
50330690 GTAGAATTACCAAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTATAGG
* *
50330717 GTAGAACTT--TGAAATACCCCTGTAGG
1 GTAGAA-TTACCGAAATACCCCTATAGG
* * * *
50330743 ATAGAAATACCAAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTATAGG
* *
50330770 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTATAGG
* * * *
50330797 GTAGAATTACTG-AATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTATAGG
*
50330823 GTAAAATTACC
1 GTAGAATTACC
50330834 ATTTTGCCCC
Statistics
Matches: 120, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.01
26 40 0.33
27 77 0.64
28 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTATAGG
Found at i:50330825 original size:53 final size:54
Alignment explanation
Indices: 50330663--50330806 Score: 200
Period size: 53 Copynumber: 2.7 Consensus size: 54
50330653 TCGATAAGTT
* * * *
50330663 GTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTATAGG
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTATAGG
* ** * *
50330717 GTAGAACT-TTGAAATACCCCTGTAGGATAGAAATACCAAAATACCCTTATAGG
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTATAGG
50330770 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTAC
1 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTAC
50330807 TGAATACCCT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 45 0.59
54 31 0.41
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (54 bp):
GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTATAGG
Found at i:50331629 original size:27 final size:26
Alignment explanation
Indices: 50331577--50331635 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
50331567 ATATATATAT
*
50331577 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
50331603 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
50331630 ATATCT
1 ATATCT
50331636 CGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:50336846 original size:14 final size:14
Alignment explanation
Indices: 50336827--50336856 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
50336817 CCATATACAA
*
50336827 ATAAACTTATCAAC
1 ATAAACTTATAAAC
50336841 ATAAACTTATAAAC
1 ATAAACTTATAAAC
50336855 AT
1 AT
50336857 CAAGAATACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAAACTTATAAAC
Found at i:50340780 original size:2 final size:2
Alignment explanation
Indices: 50340773--50340816 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
50340763 GGTTAAGGTA
*
50340773 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50340815 AT
1 AT
50340817 GAATGCTACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50340855 original size:16 final size:16
Alignment explanation
Indices: 50340834--50340865 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50340824 ACTGTAACAC
50340834 CCCAAAAATCCAGAAA
1 CCCAAAAATCCAGAAA
*
50340850 CCCAAAAATCCTGAAA
1 CCCAAAAATCCAGAAA
50340866 TCTCAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.31, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCAGAAA
Found at i:50342369 original size:28 final size:29
Alignment explanation
Indices: 50342324--50342422 Score: 123
Period size: 28 Copynumber: 3.5 Consensus size: 29
50342314 CATGACTGTA
*
50342324 AATGTGATTTGGGTCTAAT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
50342352 AATGTGATTTCGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
50342381 AATGTGA-TTGGGCCAAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
50342409 AATGAGA-TTGGGCC
1 AATGTGATTTGGGCC
50342423 CAGTGGACCA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 47 0.77
29 14 0.23
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:50353906 original size:27 final size:26
Alignment explanation
Indices: 50353854--50353912 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
50353844 CCACATATAT
*
50353854 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
50353880 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
50353907 ATATCT
1 ATATCT
50353913 AGTAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:50357195 original size:27 final size:27
Alignment explanation
Indices: 50357165--50357337 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
50357155 AGGGAAAAAT
* * *
50357165 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50357192 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50357219 GAT-ATTACTACCCTACAAGGGTATTTC
1 GGTAATT-CTACCCTACAAGGGTATTTC
* *
50357246 GGCAATTCTATCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
50357273 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
50357300 AATAAATCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
50357327 GGTAATTCTAC
1 GGTAATTCTAC
50357338 AACTTATCCA
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
26 5 0.04
27 113 0.93
28 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:50357278 original size:81 final size:81
Alignment explanation
Indices: 50357184--50357336 Score: 236
Period size: 81 Copynumber: 1.9 Consensus size: 81
50357174 ACCCCACAAG
* *
50357184 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGAT-ATTACTACCCTACAAGGGTATTTCGG
1 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAAAT-CTACCCTACAAGGGTATTTCGG
50357248 CAATTCTATCCTACAGA
65 CAATTCTATCCTACAGA
* * * *
50357265 GGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAATAAATCTACCCTACAGGGGTATTTCGGT
1 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAAATCTACCCTACAAGGGTATTTCGGC
50357330 AATTCTA
66 AATTCTA
50357337 CAACTTATCC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 63 0.97
82 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (81 bp):
GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAAATCTACCCTACAAGGGTATTTCGGC
AATTCTATCCTACAGA
Found at i:50363205 original size:40 final size:40
Alignment explanation
Indices: 50363146--50363353 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
50363136 CAATTGAATG
* * *
50363146 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
50363186 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50363226 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50363266 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50363306 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
50363346 ATATCCGG
1 ATATCCGG
50363354 TTGTAATTCC
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:50363284 original size:80 final size:80
Alignment explanation
Indices: 50363148--50363353 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
50363138 ATTGAATGAT
* * * * * *
50363148 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
50363213 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
50363228 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
50363293 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
50363308 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
50363354 TTGTAATTCC
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:50369387 original size:40 final size:40
Alignment explanation
Indices: 50369342--50369508 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50369332 CGGAATATAA
50369342 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
50369382 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
50369422 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
50369462 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50369501 CCGGATAT
1 CCGGATAT
50369509 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50377377 original size:40 final size:40
Alignment explanation
Indices: 50377332--50377499 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50377322 CGGAATATAA
50377332 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
50377372 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
50377412 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
50377452 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50377492 CCGGATAT
1 CCGGATAT
50377500 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50379628 original size:93 final size:93
Alignment explanation
Indices: 50379516--50379687 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50379506 GCCCATAAGT
* *
50379516 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50379581 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50379609 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50379674 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
50379688 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50379683 original size:46 final size:46
Alignment explanation
Indices: 50379508--50379683 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
50379498 TGTAACCCGC
* * *
50379508 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
50379554 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
50379604 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
50379647 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50379684 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:50385300 original size:40 final size:40
Alignment explanation
Indices: 50385241--50385448 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 40
50385231 CAATTGAATG
* * *
50385241 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
50385281 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50385321 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50385361 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
50385401 ATATCCGGGCTAAGACCCGAATGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
50385441 ATATCCGG
1 ATATCCGG
50385449 TTGTAATCCA
Statistics
Matches: 144, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:50385379 original size:80 final size:80
Alignment explanation
Indices: 50385243--50385448 Score: 252
Period size: 80 Copynumber: 2.6 Consensus size: 80
50385233 ATTGAATGAT
* * * * * *
50385243 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
50385308 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
50385323 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
50385388 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* * *
50385403 ATCCGGGCTAAGACCCGAATGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
50385449 TTGTAATCCA
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 107 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:50392561 original size:28 final size:29
Alignment explanation
Indices: 50392523--50392633 Score: 93
Period size: 28 Copynumber: 3.9 Consensus size: 29
50392513 CATGAATTTA
* *
50392523 AATGTTATTTGGACCTAAT-GGCCATTTG
1 AATGTGATTTGGACCTAATAGGCCATATG
* * * * *
50392551 AATTTGATTTGGGCCTAATAGACCACATA
1 AATGTGATTTGGACCTAATAGGCCATATG
*
50392580 AATGTGA-TTGGACCTAATGGGCCATATG
1 AATGTGATTTGGACCTAATAGGCCATATG
* * * *
50392608 AATGAGA-TTGGGCCTAGTGGGCCATA
1 AATGTGATTTGGACCTAATAGGCCATA
50392634 AGCATGTATG
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
28 55 0.83
29 11 0.17
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (29 bp):
AATGTGATTTGGACCTAATAGGCCATATG
Found at i:50406763 original size:29 final size:29
Alignment explanation
Indices: 50406696--50406791 Score: 140
Period size: 29 Copynumber: 3.3 Consensus size: 29
50406686 AAGGCTACAT
* *
50406696 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
50406724 TCATTCATATGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
50406753 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
50406782 ACATTCATAT
1 ACATTCATAT
50406792 ACATGCTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 20 0.34
29 39 0.66
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:50408257 original size:8 final size:8
Alignment explanation
Indices: 50408246--50408271 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
50408236 AAAAAAAAAG
50408246 TTCGGGAT
1 TTCGGGAT
50408254 TTCGGGAT
1 TTCGGGAT
50408262 TTCGGGAT
1 TTCGGGAT
50408270 TT
1 TT
50408272 TTGGGGCGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.35, T:0.42
Consensus pattern (8 bp):
TTCGGGAT
Found at i:50411569 original size:93 final size:93
Alignment explanation
Indices: 50411444--50411613 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
50411434 CCCATAAGTA
50411444 AACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
50411509 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGTTCGGATGCCTAGTTACATTTCACG
* *
50411537 AACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACAAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50411601 CGAGTTCGGATGC
65 CGAGTTCGGATGC
50411614 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACG
Found at i:50411610 original size:46 final size:46
Alignment explanation
Indices: 50411435--50411610 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
50411425 TGTAACCCGC
* * *
50411435 CCATAAGTAAACTCGGACTCAACTCAACAAGCTCAGG-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
50411481 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
50411531 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
50411574 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50411611 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 60 0.55
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50412066 original size:30 final size:30
Alignment explanation
Indices: 50412032--50412091 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50412022 ATTTAATACG
50412032 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50412062 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50412092 GGCTTGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50413570 original size:29 final size:29
Alignment explanation
Indices: 50413503--50413627 Score: 153
Period size: 29 Copynumber: 4.3 Consensus size: 29
50413493 AAGTCTACAT
* *
50413503 ACATGCATATGGCCCACTAAGCCC-AATC
1 ACATTCATATGGCCCATTAAGCCCAAATC
* *
50413531 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAAGCCCAAATC
** * *
50413560 ACATTTGTATGGACCATTAAGCCTAAATC
1 ACATTCATATGGCCCATTAAGCCCAAATC
* *
50413589 ACATTCATATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATTAAGCCCAAATC
50413618 ACATTCATAT
1 ACATTCATAT
50413628 ACATGCTTTC
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 20 0.24
29 62 0.76
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAAGCCCAAATC
Found at i:50413603 original size:58 final size:57
Alignment explanation
Indices: 50413510--50413622 Score: 172
Period size: 58 Copynumber: 2.0 Consensus size: 57
50413500 CATACATGCA
* * *
50413510 TATGGCCCACTAAGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATCACATTTG
1 TATGGACCACTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATCACATTTG
* *
50413567 TATGGACCATTAAGCCTAAATCACATTCATATGGCCCATTAGGCCTAAATCACATT
1 TATGGACCACTAAGCC-AAATCACATTCATATGGCCCATTAGGCCCAAATCACATT
50413623 CATATACATG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 14 0.28
58 36 0.72
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.27
Consensus pattern (57 bp):
TATGGACCACTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATCACATTTG
Found at i:50413707 original size:17 final size:18
Alignment explanation
Indices: 50413685--50413719 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
50413675 TGCCTATTAT
50413685 GGGCCCA-ATAGCCCATC
1 GGGCCCACATAGCCCATC
*
50413702 GGGCCCACTTAGCCCATC
1 GGGCCCACATAGCCCATC
50413720 CTGACCTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.43, G:0.23, T:0.14
Consensus pattern (18 bp):
GGGCCCACATAGCCCATC
Found at i:50417034 original size:7 final size:7
Alignment explanation
Indices: 50417022--50417101 Score: 106
Period size: 7 Copynumber: 10.9 Consensus size: 7
50417012 GTGATGCATC
50417022 ACCCTAA
1 ACCCTAA
50417029 ACCCTAAA
1 ACCCT-AA
50417037 ACCCTAA
1 ACCCTAA
*
50417044 ACCTTAAA
1 ACCCT-AA
50417052 ACCCTAAA
1 ACCCT-AA
50417060 ACCCTAA
1 ACCCTAA
50417067 ACCCTAA
1 ACCCTAA
*
50417074 ACCTTTAA
1 ACC-CTAA
50417082 ACCCTAA
1 ACCCTAA
50417089 ACCCTAA
1 ACCCTAA
50417096 ACCCTA
1 ACCCTA
50417102 TGGTTTGGGC
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
7 39 0.59
8 27 0.41
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (7 bp):
ACCCTAA
Found at i:50417042 original size:15 final size:14
Alignment explanation
Indices: 50417022--50417101 Score: 106
Period size: 15 Copynumber: 5.4 Consensus size: 14
50417012 GTGATGCATC
50417022 ACCCTAAACCCTAAA
1 ACCCTAAACCCT-AA
*
50417037 ACCCTAAACCTTAAA
1 ACCCTAAACCCT-AA
50417052 ACCCTAAAACCCTAA
1 ACCCT-AAACCCTAA
*
50417067 ACCCTAAACCTTTAA
1 ACCCTAAACC-CTAA
50417082 ACCCTAAACCCTAA
1 ACCCTAAACCCTAA
50417096 ACCCTA
1 ACCCTA
50417102 TGGTTTGGGC
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
14 14 0.24
15 39 0.66
16 6 0.10
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCCTAAACCCTAA
Found at i:50417058 original size:30 final size:29
Alignment explanation
Indices: 50417022--50417101 Score: 133
Period size: 30 Copynumber: 2.7 Consensus size: 29
50417012 GTGATGCATC
50417022 ACCCTAAACCCTAAAACCCTAAACCTTAAA
1 ACCCTAAACCCT-AAACCCTAAACCTTAAA
*
50417052 ACCCTAAAACCCTAAACCCTAAACCTTTAA
1 ACCCT-AAACCCTAAACCCTAAACCTTAAA
50417082 ACCCTAAACCCTAAACCCTA
1 ACCCTAAACCCTAAACCCTA
50417102 TGGTTTGGGC
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
29 15 0.31
30 26 0.54
31 7 0.15
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (29 bp):
ACCCTAAACCCTAAACCCTAAACCTTAAA
Found at i:50418498 original size:50 final size:50
Alignment explanation
Indices: 50418437--50418662 Score: 215
Period size: 50 Copynumber: 4.5 Consensus size: 50
50418427 TGAATACACG
* * *
50418437 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCATATTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
* * * * * ** *
50418487 TGTGTAGTACTAAATGCAGGCTACTATGCGAACTCCATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA--CCA-GATTGTTAAGTCACA
* * * * *
50418538 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
* * * *
50418588 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
*
50418637 TGTGTAGTACTAAGTGCAAGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
50418663 TGGATATCAG
Statistics
Matches: 141, Mismatches: 30, Indels: 11
0.77 0.16 0.06
Matches are distributed among these distances:
48 2 0.01
49 32 0.23
50 69 0.49
51 31 0.22
52 5 0.04
53 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
Found at i:50420566 original size:39 final size:39
Alignment explanation
Indices: 50420512--50420674 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
50420502 TGTGAATGTA
50420512 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
50420551 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
50420590 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
50420629 TGTACGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
50420669 TGTGCG
1 TGTGCG
50420675 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 98 0.86
40 16 0.14
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:50420690 original size:40 final size:39
Alignment explanation
Indices: 50420512--50420704 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 39
50420502 TGTGAATGTA
* *
50420512 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
50420551 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
50420590 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
50420629 TGTACGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
50420669 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
50420705 TGTTTTGAAC
Statistics
Matches: 137, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 98 0.72
40 39 0.28
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:50434477 original size:50 final size:48
Alignment explanation
Indices: 50434364--50434687 Score: 253
Period size: 50 Copynumber: 6.5 Consensus size: 48
50434354 CTGGTATGCA
* * * * *
50434364 TAGTAGCCTGGACTTAGTACTACACATGCGACCAACAGTCTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCCACA-TCTGGTACACG
* **
50434413 TAGTAGCCTTCACTTAGTACTACACACGTGACCTCACTATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-CAC-ATCTGGTACACG
* * * *
50434463 TAGTAGCCTGCACTTAGTACTACACACGTGA-TCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCCACA----TCTGGTACACG
* * *
50434514 TAGTAGCCTGCACTTAGTACT--ACATGCGA-CCAGCAGTCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCCA-CA-TCTGGTACACG
* ** *
50434561 TAGTAGGCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACAAG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-CA-CATCTGGTACACG
* * * * *
50434611 TAGTAGCATGCACTTAGTACTACACACGTGA-TCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCCACA----TCTGGTACACG
*
50434662 TAGTAGCCTGCACTTAGTACTGCACA
1 TAGTAGCCTGCACTTAGTACTACACA
50434688 TGCGACCTCA
Statistics
Matches: 219, Mismatches: 41, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
47 30 0.14
48 5 0.02
49 43 0.20
50 80 0.37
51 61 0.28
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCCACATCTGGTACACG
Found at i:50434486 original size:26 final size:24
Alignment explanation
Indices: 50434407--50434487 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 24
50434397 AACAGTCTGG
50434407 TACACATAGTAGCCTTCACTTAGTAC
1 TACAC-TAGTAGCC-TCACTTAGTAC
* *
50434433 TACAC-ACGT-GACCTCAC-TATCTAA
1 TACACTA-GTAG-CCTCACTTA-GTAC
50434457 TACACGTAGTAGCCTGCACTTAGTAC
1 TACAC-TAGTAGCCT-CACTTAGTAC
50434483 TACAC
1 TACAC
50434488 ACGTGATCAC
Statistics
Matches: 43, Mismatches: 4, Indels: 16
0.68 0.06 0.25
Matches are distributed among these distances:
23 2 0.05
24 13 0.30
25 9 0.21
26 17 0.40
27 2 0.05
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (24 bp):
TACACTAGTAGCCTCACTTAGTAC
Found at i:50434631 original size:148 final size:149
Alignment explanation
Indices: 50434356--50434694 Score: 563
Period size: 148 Copynumber: 2.3 Consensus size: 149
50434346 GAAGCTATCT
* *
50434356 GGTATGCATAGTAGCCTGGACTTAGTACTACACATGCGACCAACAGTCTGGTACACATAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACT-CACATGCGACCAACAGTCTGGTACACATAGTAGCC
* * * *
50434421 TTCACTTAGTACTACACACGTGACCTCACTATCTAATACACGTAGTAGCCTGCACTTAGTACTAC
65 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACAAGTAGTAGCATGCACTTAGTACTAC
50434486 ACACGTGATCACAGTTTTCG
130 ACACGTGATCACAGTTTTCG
* ** *
50434506 GGTACGCATAGTAGCCTGCACTTAGTACT-ACATGCGACCAGCAGTCTGGTACATGTAGTAGGCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTCACATGCGACCAACAGTCTGGTACACATAGTAGCCT
50434570 GCACTTAGTACTACACACGTGACCTCACCATCTAATACAAGTAGTAGCATGCACTTAGTACTACA
66 GCACTTAGTACTACACACGTGACCTCACCATCTAATACAAGTAGTAGCATGCACTTAGTACTACA
50434635 CACGTGATCACAGTTTTCG
131 CACGTGATCACAGTTTTCG
50434654 GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGCGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACT-CACATGCGACC
50434695 TCACAATAGA
Statistics
Matches: 177, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
148 140 0.79
150 37 0.21
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (149 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTCACATGCGACCAACAGTCTGGTACACATAGTAGCCT
GCACTTAGTACTACACACGTGACCTCACCATCTAATACAAGTAGTAGCATGCACTTAGTACTACA
CACGTGATCACAGTTTTCG
Found at i:50438129 original size:30 final size:30
Alignment explanation
Indices: 50438075--50438204 Score: 160
Period size: 30 Copynumber: 4.4 Consensus size: 30
50438065 TAGTGAATTT
*
50438075 GCACACTTAGTGCTATAT-ATTTTCAGCTC
1 GCACACTTAGTGCTATATAATTTTCAACTC
*
50438104 GCACACTTAGTGCTATATAATTTTCAGCTC
1 GCACACTTAGTGCTATATAATTTTCAACTC
*
50438134 GCACACTTAGTGCTGTATAA---TCAAACTC
1 GCACACTTAGTGCTATATAATTTTC-AACTC
* * * *
50438162 GCACACTTAGTGCTGTACAATTTTAAACCC
1 GCACACTTAGTGCTATATAATTTTCAACTC
50438192 GCACACTTAGTGC
1 GCACACTTAGTGC
50438205 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 5, Indels: 9
0.87 0.05 0.09
Matches are distributed among these distances:
27 2 0.02
28 23 0.25
29 18 0.20
30 47 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (30 bp):
GCACACTTAGTGCTATATAATTTTCAACTC
Found at i:50438172 original size:58 final size:58
Alignment explanation
Indices: 50438075--50438204 Score: 163
Period size: 58 Copynumber: 2.2 Consensus size: 58
50438065 TAGTGAATTT
* * * * * *
50438075 GCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTC
1 GCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAACCC
* *
50438134 GCACACTTAGTGCTGTATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAACCC
1 GCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAACCC
50438192 GCACACTTAGTGC
1 GCACACTTAGTGC
50438205 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.68
59 18 0.29
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (58 bp):
GCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAACCC
Found at i:50446097 original size:27 final size:29
Alignment explanation
Indices: 50446067--50446180 Score: 99
Period size: 30 Copynumber: 4.0 Consensus size: 29
50446057 ATGCAAGAGC
*
50446067 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
50446094 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
50446123 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * * *
50446153 GTATA-ATCAAACTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
50446181 GTACAATTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 5 0.07
28 22 0.29
29 20 0.27
30 28 0.37
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:50446134 original size:30 final size:30
Alignment explanation
Indices: 50446079--50446209 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
50446069 ATAGTGAATC
*
50446079 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
50446108 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
50446138 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
50446166 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
50446196 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50446210 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.25
29 19 0.21
30 47 0.51
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:50446178 original size:58 final size:58
Alignment explanation
Indices: 50446078--50446209 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
50446068 TATAGTGAAT
* * * * *
50446078 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* * *
50446137 TCGCACACTTAGTGCTGTATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
50446195 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50446210 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.67
59 19 0.30
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:50448141 original size:40 final size:40
Alignment explanation
Indices: 50448097--50448208 Score: 154
Period size: 39 Copynumber: 2.8 Consensus size: 40
50448087 ATATCACGAT
50448097 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
* * * *
50448137 TTGCACGAATGCCTTCGGGTCTT-GCCCGGATATAGCTAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
* * *
50448176 TAGCACAATTGCCTTCGGGTCTTAACCCGGATT
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATT
50448209 AATTTCAGCA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 33 0.53
40 29 0.47
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (40 bp):
TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
Found at i:50448189 original size:39 final size:40
Alignment explanation
Indices: 50448067--50448247 Score: 163
Period size: 40 Copynumber: 4.6 Consensus size: 40
50448057 CCGCACCAAG
* * * * * * * *
50448067 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
50448107 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
50448147 GCCTTCGGGTCTT-GCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
50448186 GCCTTCGGGTCTTAACCCGGAT-TAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
50448224 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
50448248 CATTCAATTT
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 29 0.25
39 37 0.31
40 50 0.42
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:50456351 original size:39 final size:40
Alignment explanation
Indices: 50456173--50456355 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
50456163 CCGCACCAAG
* * * * * * * *
50456173 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
50456213 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
50456253 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
50456293 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
50456332 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
50456356 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:50462625 original size:40 final size:40
Alignment explanation
Indices: 50462576--50462687 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
50462566 CAGAATTTAA
* *
50462576 CCGGATATAGCTA-CTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TATCTCGCACAAATGCCTTCGGGACATAAC
* * *
50462616 CCGGTTATAGTATCTTGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTATCTCGCACAAATGCCTTCGGGACATAAC
* * * *
50462656 CCGGATTTATTAACTCGCACCAATGCCTTCGG
1 CCGGATATAGTATCTCGCACAAATGCCTTCGG
50462688 TGTAACACCC
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 2 0.03
40 58 0.97
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
CCGGATATAGTATCTCGCACAAATGCCTTCGGGACATAAC
Found at i:50464189 original size:40 final size:40
Alignment explanation
Indices: 50464046--50464212 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 40
50464036 CGGAATATAA
* ** *
50464046 CCGGATATAATCACGTGCACAAATGCCTT-GGGTCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
* **
50464085 CCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
50464125 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * *
50464165 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGG-TCTTAGC
50464205 CCGGATAT
1 CCGGATAT
50464213 CATTCAATTT
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 24 0.23
40 80 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:50466623 original size:2 final size:2
Alignment explanation
Indices: 50466616--50466645 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
50466606 ATGTGCAAAC
50466616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50466646 GTGCAAGAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50468928 original size:30 final size:30
Alignment explanation
Indices: 50468892--50468952 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
50468882 AATTTAATAC
*
50468892 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
50468922 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
50468952 A
1 A
50468953 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:50476426 original size:29 final size:29
Alignment explanation
Indices: 50476382--50476438 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
50476372 CATTTAATAC
*
50476382 AAACTTTGGCAAAATTACATTTTTGCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCT
* *
50476411 AAACTTTTGCATAATTACACTTTTGCCC
1 AAACTTTGGCAAAATTACACTTTTGCCC
50476439 CTAGGCTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (29 bp):
AAACTTTGGCAAAATTACACTTTTGCCCT
Found at i:50487674 original size:28 final size:28
Alignment explanation
Indices: 50487605--50487705 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
50487595 GACAAGATTG
* * * *
50487605 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
50487635 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
50487663 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
50487692 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50487706 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:50487699 original size:29 final size:28
Alignment explanation
Indices: 50487634--50487705 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
50487624 AAAATTGTAC
*
50487634 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
50487662 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
50487691 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
50487706 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:50494429 original size:48 final size:47
Alignment explanation
Indices: 50494370--50494528 Score: 161
Period size: 48 Copynumber: 3.4 Consensus size: 47
50494360 CGAGAGCCAA
*
50494370 TGTAAGGCATGTCTGGGACATGCATCGGCCTCGAGATATGTGTGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGG-CTCGAGATATGTGTGCTAG
* *
50494418 TGTAAGACATGTCTGGGACATGCATCGGC-CGCG-T-TGTGAAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTCGAGATATGTG--TGCTAG
** *
50494464 TGTAAGACCACATCTGGGACATGGCATCGGCT--TGATATGTGT-C-AG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTCGAGATATGTGTGCTAG
*
50494509 TGTAAGACCTGTCTGGGACA
1 TGTAAGACATGTCTGGGACA
50494529 CGGCATTGAC
Statistics
Matches: 94, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
44 14 0.15
45 10 0.11
46 16 0.17
47 14 0.15
48 36 0.38
49 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTCGAGATATGTGTGCTAG
Found at i:50502365 original size:40 final size:40
Alignment explanation
Indices: 50502307--50502491 Score: 196
Period size: 39 Copynumber: 4.7 Consensus size: 40
50502297 GTTCAAAACA
* * ***
50502307 CCTTCGGGACATAGCCCGGTTATGGGAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
50502347 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * * *
50502387 CCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* ** *
50502426 CCTTCGGG-CTTAGCTCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
*
50502465 CCTTCGGG-CTTAGCCCAGATATCACAA
1 CCTTCGGGACTTAGCCCGGATATCACAA
50502492 TTCGCACATT
Statistics
Matches: 128, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:50502418 original size:39 final size:39
Alignment explanation
Indices: 50502337--50502499 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
50502327 TATGGGAACC
* *
50502337 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
50502377 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
50502416 CGCACAATTGCCTTCGGGCTTAGCTCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
50502455 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
50502494 CGCACA
1 CGCACA
50502500 TTCATTCACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 96 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:50507683 original size:40 final size:40
Alignment explanation
Indices: 50507622--50507861 Score: 358
Period size: 40 Copynumber: 6.0 Consensus size: 40
50507612 GGATTTAACA
* * *
50507622 GGATATAGCT-ACTCACTCGAATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGCCC
*
50507662 GGATATAGTAACTCGAACGAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCC
50507702 GGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCC
*
50507742 GGATACAGTAACTCGCACGAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCC
*
50507782 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCC
* * * *
50507822 GGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACTCGCACGAATGCCTTCGGGACTTAGCCC
50507862 AGTTATCATC
Statistics
Matches: 187, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 185 0.99
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
GGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCC
Found at i:50515785 original size:40 final size:40
Alignment explanation
Indices: 50515687--50515942 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
50515677 AAGCCACGTA
* * *
50515687 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
*
50515726 CCTT-GGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
50515765 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
50515805 -CTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
50515844 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * *
50515884 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
50515924 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50515943 TTATCATCCA
Statistics
Matches: 203, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
38 7 0.03
39 70 0.34
40 126 0.62
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:50515819 original size:79 final size:80
Alignment explanation
Indices: 50515687--50515942 Score: 378
Period size: 79 Copynumber: 3.2 Consensus size: 80
50515677 AAGCCACGTA
* * * *
50515687 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATGCCTT-GGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATA
50515749 GTAACTCGCACGAATG
65 GTAACTCGCACGAATG
50515765 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG-CTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAG
50515829 TAACTCGCACGAATG
66 TAACTCGCACGAATG
*
50515844 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATA-TA
* * * *
50515908 GTCACTAGCGCAAATG
65 GTAACTCGCACGAATG
50515924 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50515943 TTATCATCCA
Statistics
Matches: 164, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
78 16 0.10
79 96 0.59
80 52 0.32
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACGAATG
Found at i:50520613 original size:45 final size:46
Alignment explanation
Indices: 50520450--50520624 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
50520440 TGGTTGAGCA
*
50520450 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
50520496 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
50520541 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
50520589 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50520625 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:50528073 original size:46 final size:46
Alignment explanation
Indices: 50528023--50528198 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50528013 TGGTTGAGCA
50528023 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50528069 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
50528114 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50528162 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50528199 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50528179 original size:93 final size:93
Alignment explanation
Indices: 50528020--50528191 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50528010 GGATGGTTGA
* *
50528020 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50528085 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
50528113 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50528178 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
50528192 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50530216 original size:33 final size:33
Alignment explanation
Indices: 50530178--50530283 Score: 158
Period size: 33 Copynumber: 3.0 Consensus size: 33
50530168 GTTCGAGTGA
50530178 TATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 TATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
50530211 TATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATG
1 TATCCGGGCTAAGCCCGAAGGCAATTGTGC--G--A-G
50530249 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 -TATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
50530283 T
1 T
50530284 TGTGATATCC
Statistics
Matches: 67, Mismatches: 0, Indels: 12
0.85 0.00 0.15
Matches are distributed among these distances:
33 31 0.46
34 1 0.01
35 2 0.03
37 2 0.03
38 1 0.01
39 30 0.45
ACGTcount: A:0.25, C:0.24, G:0.32, T:0.20
Consensus pattern (33 bp):
TATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
Found at i:50530336 original size:40 final size:39
Alignment explanation
Indices: 50530175--50530350 Score: 211
Period size: 39 Copynumber: 4.6 Consensus size: 39
50530165 AATGTTCGAG
50530175 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC--G--A
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
50530210 -G-TATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
50530247 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
50530286 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
50530326 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
50530351 TGTTTTGAAC
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
33 30 0.24
34 1 0.01
35 1 0.01
37 1 0.01
38 1 0.01
39 49 0.40
40 40 0.33
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:50539907 original size:39 final size:39
Alignment explanation
Indices: 50539853--50539936 Score: 143
Period size: 39 Copynumber: 2.2 Consensus size: 39
50539843 AATGTTCGAG
*
50539853 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
50539892 TGATAT-CGAGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCG-GGCTAAGCCCGAAGGCAATTGTGCGAGCTA
50539931 TGATAT
1 TGATAT
50539937 GAGTACACAT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
38 2 0.05
39 41 0.95
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:50540676 original size:37 final size:39
Alignment explanation
Indices: 50540576--50540736 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
50540566 TGTGTATGAA
*
50540576 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
50540615 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
50540654 TGTGCGAG-T-TGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
50540691 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
50540731 TGTGCG
1 TGTGCG
50540737 GGTTACCATA
Statistics
Matches: 116, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
37 36 0.31
38 2 0.02
39 61 0.53
40 17 0.15
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:50540788 original size:80 final size:76
Alignment explanation
Indices: 50540593--50540791 Score: 211
Period size: 76 Copynumber: 2.6 Consensus size: 76
50540583 ATTGTGATAT
** *
50540593 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
* *
50540658 CGAGTTGATAT
66 CGAGTTCATAA
** * * *
50540669 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
*
50540734 GCGGGTTACCATAA
65 GCGAGTT--CATAA
* ***
50540748 CCGGGCTATGTCCCGAAGGTGTTTGAACGAGTAGCT-ATATCCGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGG
50540792 ATAAACTCCG
Statistics
Matches: 106, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
76 48 0.45
77 20 0.19
79 12 0.11
80 25 0.24
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.24
Consensus pattern (76 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGTTCATAA
Found at i:50542311 original size:40 final size:39
Alignment explanation
Indices: 50542174--50542305 Score: 183
Period size: 39 Copynumber: 3.4 Consensus size: 39
50542164 AATGTTTGAG
*
50542174 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
50542213 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
50542252 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
50542292 CCATAACCGGGCTA
1 TGATATCCGGGCTA
50542306 TGTCCCAAGG
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.63
40 30 0.37
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:50543898 original size:40 final size:40
Alignment explanation
Indices: 50543816--50544032 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
50543806 AAGCCAAGTA
* * *
50543816 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
50543854 CCTTCGGGACGTAGCCCGGATATAGTAACTGGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50543894 CCTTCGGGACTTAGCCCGGATATAGTAACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
50543934 CCTTCAGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
50543974 CCTTCAGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50544014 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50544033 TTATCATCCA
Statistics
Matches: 163, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 12 0.07
39 16 0.10
40 135 0.83
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50545396 original size:187 final size:187
Alignment explanation
Indices: 50545075--50545461 Score: 756
Period size: 187 Copynumber: 2.1 Consensus size: 187
50545065 GGCCTTTGAC
50545075 CAAGACTTTAAACAAAGTCTATGTTCGGCTATCACACATATGGGCATTATTAGTTCAAAGTTTTA
1 CAAGA-TTTAAACAAAGTCTATGTTCGGCTATCACACATATGGGCATTATTAGTTCAAAGTTTTA
*
50545140 ACAAGATTAATTTCTTTGATCTTAACCTAAGTGACAATCCCCATTGTTCATCTAGATTTAGCATG
65 ACAAGATTAATTTCTTTGATCTTAACCTAAGTGACAACCCCCATTGTTCATCTAGATTTAGCATG
50545205 AAACAAACACCAACCAAGAAAACAACACCCATGGCCGAGTATCATCTTCATCACATAG
130 AAACAAACACCAACCAAGAAAACAACACCCATGGCCGAGTATCATCTTCATCACATAG
50545263 CAAGATTTAAACAAAGTCTATGTTCGGCTATCACACATATGGGCATTATTAGTTCAAAGTTTTAA
1 CAAGATTTAAACAAAGTCTATGTTCGGCTATCACACATATGGGCATTATTAGTTCAAAGTTTTAA
50545328 CAAGATTAATTTCTTTGATCTTAACCTAAGTGACAACCCCCATTGTTCATCTAGATTTAGCATGA
66 CAAGATTAATTTCTTTGATCTTAACCTAAGTGACAACCCCCATTGTTCATCTAGATTTAGCATGA
50545393 AACAAACACCAACCAAGAAAACAACACCCATGGCCGAGTATCATCTTCATCACATAG
131 AACAAACACCAACCAAGAAAACAACACCCATGGCCGAGTATCATCTTCATCACATAG
50545450 CAAGATTTAAAC
1 CAAGATTTAAAC
50545462 CATGGGCTAG
Statistics
Matches: 198, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
187 193 0.97
188 5 0.03
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (187 bp):
CAAGATTTAAACAAAGTCTATGTTCGGCTATCACACATATGGGCATTATTAGTTCAAAGTTTTAA
CAAGATTAATTTCTTTGATCTTAACCTAAGTGACAACCCCCATTGTTCATCTAGATTTAGCATGA
AACAAACACCAACCAAGAAAACAACACCCATGGCCGAGTATCATCTTCATCACATAG
Found at i:50547125 original size:15 final size:15
Alignment explanation
Indices: 50547105--50547134 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50547095 ATCAAATCCA
50547105 TAAATACAGCAGGGG
1 TAAATACAGCAGGGG
50547120 TAAATACAGCAGGGG
1 TAAATACAGCAGGGG
50547135 CATTAGTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.33, T:0.13
Consensus pattern (15 bp):
TAAATACAGCAGGGG
Found at i:50549050 original size:71 final size:71
Alignment explanation
Indices: 50548967--50549130 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
50548957 GAGATGTATC
*
50548967 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGGTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50549032 AGGACA
66 AGGACA
*
50549038 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
50549103 CGGACA
66 AGGACA
50549109 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50549131 AGACAAATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50553248 original size:39 final size:40
Alignment explanation
Indices: 50553205--50553317 Score: 131
Period size: 40 Copynumber: 2.9 Consensus size: 40
50553195 TATCTAGCAC
* * *
50553205 AGCCTATAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACGA
1 AGCCTACAGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
* *
50553244 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTACAGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
50553284 AGCCTGCGGGTCTTTAAGCCCGGATACCATTCCA
1 AGCCTACAGGTCTTTAAGCCCGGATACAATTCCA
50553318 CATCAAATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 14 0.21
40 52 0.79
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
AGCCTACAGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:50553276 original size:40 final size:40
Alignment explanation
Indices: 50553232--50553317 Score: 163
Period size: 40 Copynumber: 2.1 Consensus size: 40
50553222 CCCGGATGTC
50553232 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
*
50553272 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACC
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
50553312 ATTCCA
1 ATTCCA
50553318 CATCAAATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.21
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
Found at i:50562850 original size:34 final size:35
Alignment explanation
Indices: 50562802--50562878 Score: 120
Period size: 34 Copynumber: 2.2 Consensus size: 35
50562792 ATATGGCTTG
* *
50562802 AAAATGATGTTAGTTTGGTGTGTATATTGCCTTGT
1 AAAATGATGTTAGTTTGGTGTATATATTGCCTTCT
*
50562837 ACAATGAT-TTAGTTTGGTGTATATATTGCCTTCT
1 AAAATGATGTTAGTTTGGTGTATATATTGCCTTCT
50562871 AAAATGAT
1 AAAATGAT
50562879 ATATCTTGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
34 31 0.82
35 7 0.18
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (35 bp):
AAAATGATGTTAGTTTGGTGTATATATTGCCTTCT
Found at i:50565524 original size:16 final size:18
Alignment explanation
Indices: 50565498--50565531 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
50565488 TTAGAATTGG
50565498 ATTGAGAAATTT-ATTTA
1 ATTGAGAAATTTAATTTA
50565515 ATTG-GAAATTTAATTTA
1 ATTGAGAAATTTAATTTA
50565532 TCTAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (18 bp):
ATTGAGAAATTTAATTTA
Found at i:50566749 original size:18 final size:19
Alignment explanation
Indices: 50566726--50566761 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
50566716 AAATGCAATT
50566726 GGCCAAAACT-AGAAAAAA
1 GGCCAAAACTAAGAAAAAA
50566744 GGCCAAAACTAAGAAAAA
1 GGCCAAAACTAAGAAAAA
50566762 GATATTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.61, C:0.17, G:0.17, T:0.06
Consensus pattern (19 bp):
GGCCAAAACTAAGAAAAAA
Found at i:50567861 original size:13 final size:14
Alignment explanation
Indices: 50567834--50567862 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
50567824 TTATTAATAT
50567834 TTAAAAAAATCAAA
1 TTAAAAAAATCAAA
50567848 TTAAAAAAAT-AAA
1 TTAAAAAAATCAAA
50567861 TT
1 TT
50567863 TTAATGTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (14 bp):
TTAAAAAAATCAAA
Found at i:50568379 original size:13 final size:13
Alignment explanation
Indices: 50568355--50568401 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 13
50568345 CTATATTAGA
50568355 TTTTTATT-ATAT
1 TTTTTATTAATAT
50568367 TTTTTATTAATAT
1 TTTTTATTAATAT
* **
50568380 TTTCTAAAAATA-
1 TTTTTATTAATAT
50568392 TTTTTATTAA
1 TTTTTATTAA
50568402 AAATTAATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
12 15 0.54
13 13 0.46
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTTATTAATAT
Found at i:50571531 original size:30 final size:30
Alignment explanation
Indices: 50571495--50571595 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
50571485 GACAAGATTG
* * *
50571495 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
50571525 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
50571553 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
50571582 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50571596 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:50571607 original size:29 final size:28
Alignment explanation
Indices: 50571524--50571599 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
50571514 AAAATTGTAC
* *
50571524 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
50571552 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
50571581 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
50571600 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:50579415 original size:30 final size:30
Alignment explanation
Indices: 50579379--50579479 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
50579369 GACAAGATTG
* * *
50579379 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
50579409 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
50579437 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
50579466 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50579480 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:50579491 original size:29 final size:28
Alignment explanation
Indices: 50579408--50579483 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
50579398 AAAATTGTAC
* *
50579408 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
50579436 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
50579465 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
50579484 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:50581528 original size:31 final size:32
Alignment explanation
Indices: 50581493--50581553 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
50581483 TATTTAGAGG
50581493 AATA-TTATTATCATTTAAAAAAATTAAAGCT
1 AATATTTATTATCATTTAAAAAAATTAAAGCT
* * *
50581524 AATATTTGTTATCATTTTACAAAATTAAAG
1 AATATTTATTATCATTTAAAAAAATTAAAG
50581554 TTGTAATTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.41
Consensus pattern (32 bp):
AATATTTATTATCATTTAAAAAAATTAAAGCT
Found at i:50581596 original size:33 final size:32
Alignment explanation
Indices: 50581500--50581609 Score: 123
Period size: 32 Copynumber: 3.4 Consensus size: 32
50581490 AGGAATATTA
* * * * *
50581500 TTATCATTTAAAAAAATTAAAGCTAATATTTG
1 TTATCATTTCACAAAATAAAAGTTGATATTTG
* *
50581532 TTATCATTTTACAAAATTAAAGTTG-TAATTTG
1 TTATCATTTCACAAAATAAAAGTTGAT-ATTTG
50581564 TTATCATTTCACAAAATGAAAAGTTGATATTTG
1 TTATCATTTCACAAAAT-AAAAGTTGATATTTG
*
50581597 TTACCATTTCACA
1 TTATCATTTCACA
50581610 GAACTGAGTG
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
31 1 0.01
32 42 0.62
33 24 0.35
34 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (32 bp):
TTATCATTTCACAAAATAAAAGTTGATATTTG
Found at i:50589401 original size:42 final size:42
Alignment explanation
Indices: 50589257--50589401 Score: 141
Period size: 42 Copynumber: 3.4 Consensus size: 42
50589247 TGTCATATAT
* * * * *
50589257 CAGATATGGTCTTGCATGTAA-TCTCGTATCGATGCCAATAGCC
1 CAGATATGGTCTTACACG-AAGTCTCATATCGATG-CTATATCC
* * * * * * *
50589300 TAGCTATGGTCTTACACAAAGTCTCCTAACGATG-TCACATCT
1 CAGATATGGTCTTACACGAAGTCTCATATCGATGCT-ATATCC
50589342 CAGATATGGTCTTACACGAAGTCTCATATCGATGCTATATCC
1 CAGATATGGTCTTACACGAAGTCTCATATCGATGCTATATCC
50589384 CAGATATGGTCTTACACG
1 CAGATATGGTCTTACACG
50589402 TAATCTTAGT
Statistics
Matches: 81, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
42 56 0.69
43 25 0.31
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (42 bp):
CAGATATGGTCTTACACGAAGTCTCATATCGATGCTATATCC
Found at i:50589415 original size:85 final size:85
Alignment explanation
Indices: 50589246--50589400 Score: 197
Period size: 85 Copynumber: 1.8 Consensus size: 85
50589236 TACCGTACCA
* * * * * *
50589246 ATGTCATATATCAGATATGGTCTTGCATGTAATCTCGTATCGATGCCAATAGCCTAGCTATGGTC
1 ATGTCACATATCAGATATGGTCTTACACGTAATCTCATATCGATGCCAATAGCCCAGATATGGTC
*
50589311 TTACACAAAGTCTCCTAACG
66 TTACACAAAGTCTACTAACG
* * *
50589331 ATGTCACATCTCAGATATGGTCTTACACG-AAGTCTCATATCGATG-CTATATCCCAGATATGGT
1 ATGTCACATATCAGATATGGTCTTACACGTAA-TCTCATATCGATGCCAATAGCCCAGATATGGT
50589394 CTTACAC
65 CTTACAC
50589401 GTAATCTTAG
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
84 23 0.38
85 37 0.62
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (85 bp):
ATGTCACATATCAGATATGGTCTTACACGTAATCTCATATCGATGCCAATAGCCCAGATATGGTC
TTACACAAAGTCTACTAACG
Found at i:50593395 original size:26 final size:27
Alignment explanation
Indices: 50593366--50593417 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 27
50593356 TGAAAATTTG
50593366 GCTTAAAATATATTATGA-TCATAAAA
1 GCTTAAAATATATTATGACTCATAAAA
50593392 GCTTAAAATATATTATGACTCATAAA
1 GCTTAAAATATATTATGACTCATAAA
50593418 GATTTGAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.35
Consensus pattern (27 bp):
GCTTAAAATATATTATGACTCATAAAA
Found at i:50603918 original size:27 final size:27
Alignment explanation
Indices: 50603598--50603928 Score: 454
Period size: 27 Copynumber: 12.3 Consensus size: 27
50603588 CCAAAGTACT
50603598 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
50603625 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
50603652 CTC-AGTTTACAGAATTACCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
50603679 CTCAATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
50603706 CTTGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
50603733 CTC-AGTTTACAGAATTACCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* **
50603760 ATC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
50603787 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
50603814 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
50603841 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
50603868 CTC-AGTTTACAAAATTATCATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
50603895 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
50603922 CTTGATT
1 CTCGATT
50603929 GTGAAATTAC
Statistics
Matches: 268, Mismatches: 30, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.01
27 262 0.98
28 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:50604001 original size:54 final size:54
Alignment explanation
Indices: 50603933--50604128 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
50603923 TTGATTGTGA
* ** * *
50603933 AATTACTGAAATACCCCTGTAGGATAGAATTTTCGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAG
* *
50603987 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAG
* *
50604041 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
50604095 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGATAGAATTACC
50604129 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.99
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:50604120 original size:81 final size:81
Alignment explanation
Indices: 50603933--50604126 Score: 244
Period size: 81 Copynumber: 2.4 Consensus size: 81
50603923 TTGATTGTGA
* * * * *
50603933 AATTACTGAAATACCCCTGTAGGATAGAATTTTCGAAATACCCCTATAAGGTAGAATTACTGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCGAAA
*
50603998 TACCCTTATAGGATAG
66 TACCCCTATAGGATAG
* * * *
50604014 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCGAAA
* *
50604079 TACCCCTGTAGGGTAG
66 TACCCCTATAGGATAG
* * * *
50604095 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTA
50604127 CCATTTTGCC
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 96 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCGAAA
TACCCCTATAGGATAG
Found at i:50604128 original size:27 final size:27
Alignment explanation
Indices: 50603933--50604128 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
50603923 TTGATTGTGA
* * *
50603933 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * * *
50603960 AATTTTCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
50603987 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
50604014 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
50604041 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
50604068 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
50604095 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
50604122 AATTACC
1 AATTACC
50604129 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:50604388 original size:27 final size:26
Alignment explanation
Indices: 50604331--50604409 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
50604321 GAAAGCGTTA
* *
50604331 TGGTGGCTATGCCACAAATTTCTGTTC
1 TGGTGGCTCTGCCAC-AATATCTGTTC
*
50604358 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGT-TC
* **
50604385 TGGTGACTCTATCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
50604410 GACCGATCGA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 9 0.20
27 36 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:50604690 original size:32 final size:32
Alignment explanation
Indices: 50604624--50604697 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 32
50604614 ATTTACCGAA
* *
50604624 GGCTGTGTGCCAAGTATATTACCGTCACTGAT
1 GGCTATGTGCCAAGTATATTACAGTCACTGAT
*
50604656 GGCTATGTGCCGAAGT-TATTACAGTTATCT-AT
1 GGCTATGTGCC-AAGTATATTACAGTCA-CTGAT
*
50604688 GGCTTTGTGC
1 GGCTATGTGC
50604698 TACGTATTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 30 0.83
33 6 0.17
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (32 bp):
GGCTATGTGCCAAGTATATTACAGTCACTGAT
Found at i:50604742 original size:27 final size:27
Alignment explanation
Indices: 50604712--50604793 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 27
50604702 TATTCTGTTA
* *
50604712 GGTGGGTTTGCCACATTATCTG-ATTCT
1 GGTGGCTTTGCCACAATATCTGTA-TCT
*
50604739 GGTGGCTTTGCCATAATATCTGTATCT
1 GGTGGCTTTGCCACAATATCTGTATCT
* * * *
50604766 GGTGACTCTGTCACGATATCTGT-TCT
1 GGTGGCTTTGCCACAATATCTGTATCT
50604792 GG
1 GG
50604794 CAGTCATGCT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.11
27 40 0.87
28 1 0.02
ACGTcount: A:0.16, C:0.20, G:0.26, T:0.39
Consensus pattern (27 bp):
GGTGGCTTTGCCACAATATCTGTATCT
Found at i:50604920 original size:6 final size:6
Alignment explanation
Indices: 50604911--50605072 Score: 165
Period size: 6 Copynumber: 26.8 Consensus size: 6
50604901 TTGCATTCAC
* *
50604911 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
50604959 ATTACTA ATACTG ATTCTG ATTCTA ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
*
50605008 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
50605056 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
50605073 CATTTTGGTT
Statistics
Matches: 132, Mismatches: 11, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
5 11 0.08
6 110 0.83
7 9 0.07
8 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Done.