Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 180 of 345
Found at i:50957683 original size:29 final size:28
Alignment explanation
Indices: 50957598--50957712 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
50957588 TACCTGTATC
* *
50957598 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* * * *
50957626 TGGCCTATTAGGCACAAACGAC-CTCTATA
1 TGGCCCATTAGGCCCAATC-ACATTC-ATA
*
50957655 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
50957684 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
50957712 T
1 T
50957713 ACATGCTCAC
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
28 29 0.42
29 36 0.52
30 4 0.06
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:50957948 original size:8 final size:8
Alignment explanation
Indices: 50957935--50957977 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
50957925 TCAGCTTTTT
50957935 GGCATTTC
1 GGCATTTC
50957943 GGCATTTC
1 GGCATTTC
*
50957951 GGCTTTTC
1 GGCATTTC
*
50957959 GGCATTTT
1 GGCATTTC
50957967 GGCATTTC
1 GGCATTTC
50957975 GGC
1 GGC
50957978 TTTTGCCGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.09, C:0.23, G:0.28, T:0.40
Consensus pattern (8 bp):
GGCATTTC
Found at i:50957955 original size:24 final size:24
Alignment explanation
Indices: 50957923--50957981 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
50957913 GTAGCCAAAC
* *
50957923 TTTCAGCTTTTTGGCATTTCGGCA
1 TTTCGGCTTTTCGGCATTTCGGCA
*
50957947 TTTCGGCTTTTCGGCATTTTGGCA
1 TTTCGGCTTTTCGGCATTTCGGCA
50957971 TTTCGGCTTTT
1 TTTCGGCTTTT
50957982 GCCGATCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.08, C:0.20, G:0.22, T:0.49
Consensus pattern (24 bp):
TTTCGGCTTTTCGGCATTTCGGCA
Found at i:50957958 original size:16 final size:15
Alignment explanation
Indices: 50957931--50957982 Score: 68
Period size: 16 Copynumber: 3.3 Consensus size: 15
50957921 ACTTTCAGCT
50957931 TTTTGGCATTTCGGC
1 TTTTGGCATTTCGGC
* *
50957946 ATTTCGGCTTTTCGGC
1 -TTTTGGCATTTCGGC
50957962 ATTTTGGCATTTCGGC
1 -TTTTGGCATTTCGGC
50957978 TTTTG
1 TTTTG
50957983 CCGATCTACT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 5 0.16
16 27 0.84
ACGTcount: A:0.08, C:0.19, G:0.25, T:0.48
Consensus pattern (15 bp):
TTTTGGCATTTCGGC
Found at i:50962260 original size:29 final size:28
Alignment explanation
Indices: 50962175--50962289 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
50962165 TACCTGTATC
* *
50962175 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* * * *
50962203 TGGCCTATTAGGCACAAACGAC-CTCTATA
1 TGGCCCATTAGGCCCAATC-ACATTC-ATA
*
50962232 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
50962261 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
50962289 T
1 T
50962290 ACATGCTCAC
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
28 29 0.42
29 36 0.52
30 4 0.06
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:50962370 original size:17 final size:18
Alignment explanation
Indices: 50962348--50962381 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50962338 TGCCTATTAT
50962348 GGGCCCAAC-AGCCCATC
1 GGGCCCAACTAGCCCATC
*
50962365 GGGCCCATCTAGCCCAT
1 GGGCCCAACTAGCCCAT
50962382 TCTGGCTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
GGGCCCAACTAGCCCATC
Found at i:50962525 original size:8 final size:8
Alignment explanation
Indices: 50962512--50962554 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
50962502 TCAGCTTTTT
50962512 GGCATTTC
1 GGCATTTC
50962520 GGCATTTC
1 GGCATTTC
*
50962528 GGCTTTTC
1 GGCATTTC
*
50962536 GGCATTTT
1 GGCATTTC
50962544 GGCATTTC
1 GGCATTTC
50962552 GGC
1 GGC
50962555 TTTTGCCGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.09, C:0.23, G:0.28, T:0.40
Consensus pattern (8 bp):
GGCATTTC
Found at i:50962532 original size:24 final size:24
Alignment explanation
Indices: 50962500--50962558 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
50962490 GTAGCCAAAC
* *
50962500 TTTCAGCTTTTTGGCATTTCGGCA
1 TTTCGGCTTTTCGGCATTTCGGCA
*
50962524 TTTCGGCTTTTCGGCATTTTGGCA
1 TTTCGGCTTTTCGGCATTTCGGCA
50962548 TTTCGGCTTTT
1 TTTCGGCTTTT
50962559 GCCGATCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.08, C:0.20, G:0.22, T:0.49
Consensus pattern (24 bp):
TTTCGGCTTTTCGGCATTTCGGCA
Found at i:50962535 original size:16 final size:15
Alignment explanation
Indices: 50962508--50962559 Score: 68
Period size: 16 Copynumber: 3.3 Consensus size: 15
50962498 ACTTTCAGCT
50962508 TTTTGGCATTTCGGC
1 TTTTGGCATTTCGGC
* *
50962523 ATTTCGGCTTTTCGGC
1 -TTTTGGCATTTCGGC
50962539 ATTTTGGCATTTCGGC
1 -TTTTGGCATTTCGGC
50962555 TTTTG
1 TTTTG
50962560 CCGATCTACT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 5 0.16
16 27 0.84
ACGTcount: A:0.08, C:0.19, G:0.25, T:0.48
Consensus pattern (15 bp):
TTTTGGCATTTCGGC
Found at i:50966834 original size:29 final size:28
Alignment explanation
Indices: 50966749--50966863 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
50966739 TACCTGTATC
* *
50966749 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* * * *
50966777 TGGCCTATTAGGCACAAACGAC-CTCTATA
1 TGGCCCATTAGGCCCAATC-ACATTC-ATA
*
50966806 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
50966835 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
50966863 T
1 T
50966864 ACATGCTCAC
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
28 29 0.42
29 36 0.52
30 4 0.06
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:50966944 original size:17 final size:18
Alignment explanation
Indices: 50966922--50966955 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50966912 TGCCTATTAT
50966922 GGGCCCAAC-AGCCCATC
1 GGGCCCAACTAGCCCATC
*
50966939 GGGCCCATCTAGCCCAT
1 GGGCCCAACTAGCCCAT
50966956 TCTGGCTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
GGGCCCAACTAGCCCATC
Found at i:50967099 original size:8 final size:8
Alignment explanation
Indices: 50967086--50967128 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
50967076 TCAGCTTTTT
50967086 GGCATTTC
1 GGCATTTC
50967094 GGCATTTC
1 GGCATTTC
*
50967102 GGCTTTTC
1 GGCATTTC
* *
50967110 GGTATTTT
1 GGCATTTC
50967118 GGCATTTC
1 GGCATTTC
50967126 GGC
1 GGC
50967129 TTTTGCCGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (8 bp):
GGCATTTC
Found at i:50967106 original size:24 final size:24
Alignment explanation
Indices: 50967074--50967132 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
50967064 GTAGCCAAAC
* *
50967074 TTTCAGCTTTTTGGCATTTCGGCA
1 TTTCGGCTTTTCGGCATTTCGGCA
* *
50967098 TTTCGGCTTTTCGGTATTTTGGCA
1 TTTCGGCTTTTCGGCATTTCGGCA
50967122 TTTCGGCTTTT
1 TTTCGGCTTTT
50967133 GCCGATCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.08, C:0.19, G:0.22, T:0.51
Consensus pattern (24 bp):
TTTCGGCTTTTCGGCATTTCGGCA
Found at i:50967109 original size:16 final size:16
Alignment explanation
Indices: 50967074--50967132 Score: 66
Period size: 16 Copynumber: 3.7 Consensus size: 16
50967064 GTAGCCAAAC
*
50967074 TTTCAGCTTTTTGGCA
1 TTTCGGCTTTTTGGCA
* * *
50967090 TTTCGGCATTTCGGCT
1 TTTCGGCTTTTTGGCA
50967106 TTTCGG-TATTTTGGCA
1 TTTCGGCT-TTTTGGCA
50967122 TTTCGGCTTTT
1 TTTCGGCTTTT
50967133 GCCGATCTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
16 33 0.97
17 1 0.03
ACGTcount: A:0.08, C:0.19, G:0.22, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTTGGCA
Found at i:50971373 original size:29 final size:28
Alignment explanation
Indices: 50971335--50971419 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 28
50971325 CAAACATATT
50971335 TATATGGCCCATTAGGCCCAATC-CAACTG
1 TATATGGCCCATTAGGCCCAATCAC-A-TG
*
50971364 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCC-AATCACATG
* *
50971393 TATATGGCCCGTTAGGCCCATTCACAT
1 TATATGGCCCATTAGGCCCAATCACAT
50971420 TCATATTCAT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
28 7 0.14
29 38 0.75
30 5 0.10
31 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACATG
Found at i:50971374 original size:57 final size:58
Alignment explanation
Indices: 50971304--50971412 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 58
50971294 ATCCACTTAC
* *
50971304 CTGTATCTAGCCCACTAAGCCCAAA-CATATTTATATGGCCCATTAGGCCCAATCCAA
1 CTGTATATAGCCCACTAAGCCCAAATCACATTTATATGGCCCATTAGGCCCAATCCAA
* * * *
50971361 CTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 CTGTATATAGCCCACTAAGCCCAAATCACATTTATATGGCCCATTAGGCCCA
50971413 TTCACATTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (58 bp):
CTGTATATAGCCCACTAAGCCCAAATCACATTTATATGGCCCATTAGGCCCAATCCAA
Found at i:50973199 original size:40 final size:40
Alignment explanation
Indices: 50973114--50973264 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
50973104 AATTGAATGA
* * *
50973114 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
50973154 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
50973195 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
50973234 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
50973265 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:50973278 original size:40 final size:40
Alignment explanation
Indices: 50973150--50973280 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
50973140 TATGCTGGAA
* * *
50973150 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
50973190 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
50973230 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
50973270 ATTATATCCGG
1 ATTATATCCGG
50973281 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:50987210 original size:43 final size:43
Alignment explanation
Indices: 50987163--50987278 Score: 139
Period size: 41 Copynumber: 2.7 Consensus size: 43
50987153 TATGTGTTCT
50987163 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATAAGCGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATAAGCGATTA
* * * * * *
50987206 CGTGTAAGGCC-CTGTTTGGGAAG-TGGCA-TAATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGACGTTGGCATTGATAAGCGATTA
*
50987247 CATGTAAGACCACGTCTGGGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTG
50987279 TACGATATGT
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
41 27 0.47
42 12 0.21
43 19 0.33
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATTGATAAGCGATTA
Found at i:50989302 original size:28 final size:29
Alignment explanation
Indices: 50989192--50989306 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
50989182 GTGAGCATCA
* * *
50989192 ATATGAATGTGA-CTGGGCTTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
50989220 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
50989249 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
50989278 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
50989306 A
1 A
50989307 AATACAGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:50989312 original size:57 final size:58
Alignment explanation
Indices: 50989205--50989315 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
50989195 TGAATGTGAC
* * *
50989205 TGGGCTTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGTGATT
* * *
50989263 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAAATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGT
50989316 ATGTAAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGTGATT
Found at i:50992807 original size:27 final size:28
Alignment explanation
Indices: 50992777--50992876 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
50992767 ATAGTGAGTC
50992777 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
50992804 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
50992832 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
50992863 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50992877 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:50993726 original size:7 final size:7
Alignment explanation
Indices: 50993716--50993740 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
50993706 TCATCACCAC
50993716 AACATCA
1 AACATCA
50993723 AACATCA
1 AACATCA
50993730 AACATCA
1 AACATCA
50993737 AACA
1 AACA
50993741 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:50996835 original size:93 final size:93
Alignment explanation
Indices: 50996723--50996894 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50996713 GCCCATAAGT
* *
50996723 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50996788 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50996816 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50996881 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
50996895 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50996890 original size:46 final size:46
Alignment explanation
Indices: 50996715--50996890 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
50996705 TGTAACCCGC
* * *
50996715 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
50996761 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
50996811 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
50996854 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50996891 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:51002419 original size:27 final size:28
Alignment explanation
Indices: 51002389--51002488 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
51002379 ATAGTGAGTC
51002389 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
51002416 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
51002444 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
51002475 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51002489 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:51003335 original size:7 final size:7
Alignment explanation
Indices: 51003325--51003349 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51003315 TCATCACCAC
51003325 AACATCA
1 AACATCA
51003332 AACATCA
1 AACATCA
51003339 AACATCA
1 AACATCA
51003346 AACA
1 AACA
51003350 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:51006767 original size:29 final size:29
Alignment explanation
Indices: 51006735--51006807 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
51006725 CTTCGAGCTC
* *
51006735 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
** *
51006764 GCACACTTAGTGCCATATATTTCTAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
51006793 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
51006808 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:51008017 original size:25 final size:24
Alignment explanation
Indices: 51007981--51008037 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
51007971 TTTTTTTCCT
51007981 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* * *
51008006 TTTCTTTTTTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
51008030 TATTCTTT
1 T-TTCTTT
51008038 CTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:51009069 original size:53 final size:54
Alignment explanation
Indices: 51008924--51009081 Score: 203
Period size: 53 Copynumber: 2.9 Consensus size: 54
51008914 GTAAGGTTTC
* * *
51008924 TAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTA
1 TAAGGCAAGG-TACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTA
* * * * *
51008979 TAAGGCAAAGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-A
1 TAAGGCAAGGTACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTA
*
51009031 TAAGGCAAGGCTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGGCAAGG-TACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
51009082 TCAAAAGGAT
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
52 10 0.11
53 36 0.41
54 33 0.38
55 9 0.10
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
TAAGGCAAGGTACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTA
Found at i:51009346 original size:16 final size:16
Alignment explanation
Indices: 51009325--51009355 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51009315 ATAAATCTGA
51009325 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
51009341 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
51009356 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:51011493 original size:21 final size:22
Alignment explanation
Indices: 51011467--51011507 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
51011457 CACGTTAGAT
*
51011467 AAGGGC-ACACGCCCGTGTGGG
1 AAGGGCAACACGCCCATGTGGG
51011488 AAGGGCAACACGCCCATGTG
1 AAGGGCAACACGCCCATGTG
51011508 ACCATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (22 bp):
AAGGGCAACACGCCCATGTGGG
Found at i:51012840 original size:48 final size:47
Alignment explanation
Indices: 51012671--51012988 Score: 199
Period size: 48 Copynumber: 6.7 Consensus size: 47
51012661 TGTCTGAAGT
* * * * *
51012671 CGATGCCATATCCCAGACATGGTATTACGCTGACTATCGTCAT-CGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CCTCATACG-TGC
* * * * *
51012720 CGATGCCATGTCCCTGGCATGGTCTTACACTTG-CTCTTGCATATCTGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACAC-TGACACCT-CATA-C-GTGC
* *
51012770 CGATGCCATGTCCGAGATATGGTCTTACACTGACACCTCTATACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTC-ATACGTGC
*
51012818 CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACTTCATGA-G-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACCTCAT-ACGTGC
* * * * * **
51012866 CGATG-CATATCCCAGACAT-GTCTTAAACTAGTTCTCGTC-TAAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACCTCATACGTGC
* * * *
51012912 CGATGCCATGTCCTAGACATGGTCTTACACT-AGC-TCTCATAATGTCAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CACCTCAT-ACGT-GC
51012960 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
51012989 AGCTCACAAT
Statistics
Matches: 214, Mismatches: 35, Indels: 43
0.73 0.12 0.15
Matches are distributed among these distances:
44 1 0.00
45 3 0.01
46 31 0.14
47 43 0.20
48 61 0.29
49 33 0.15
50 41 0.19
51 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCATACGTGC
Found at i:51012930 original size:47 final size:43
Alignment explanation
Indices: 51012815--51012993 Score: 164
Period size: 47 Copynumber: 3.9 Consensus size: 43
51012805 CCTCTATACG
*
51012815 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GACTTACTTCATGA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-C-T-C-TCATAA
* * *
51012863 GGCCGATGCATATCCCAGACATGTCTTAAACTAGTTCTCGTC-TAAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAG--CTC-TCAT-AA
*
51012909 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAA
51012954 TGTCACCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 TG---CCGATGCATGTCCCAGACATGTCTTACACTAGCTC
51012994 ACAATAACCC
Statistics
Matches: 111, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
45 7 0.06
46 39 0.35
47 40 0.36
48 25 0.23
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (43 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAA
Found at i:51012930 original size:94 final size:94
Alignment explanation
Indices: 51012815--51012990 Score: 248
Period size: 94 Copynumber: 1.9 Consensus size: 94
51012805 CCTCTATACG
* * **
51012815 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GACT-TACTTCATGAGGCCGATGCATATCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCT-CATAATGACACCGATGCATATCC
51012878 CAGACATGTCTTAAACTAGTTCTCGTCTAAA
64 CAGACATGTCTTAAACTAGTTCTCGTCTAAA
* * *
51012909 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTCACCGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGACACCGATGCATATCCCA
*
51012974 GACATGTCTTACACTAG
66 GACATGTCTTAAACTAG
51012991 CTCACAATAA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
94 70 0.97
95 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGACACCGATGCATATCCCA
GACATGTCTTAAACTAGTTCTCGTCTAAA
Found at i:51013629 original size:13 final size:13
Alignment explanation
Indices: 51013611--51013635 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51013601 CTAAAAGTAC
51013611 AAAAATCATCAAG
1 AAAAATCATCAAG
51013624 AAAAATCATCAA
1 AAAAATCATCAA
51013636 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:51014525 original size:53 final size:53
Alignment explanation
Indices: 51014445--51014550 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
51014435 AGCCAAACGA
*
51014445 TAGGCCACAGGCCCTACTCTCTCGGTAACCTCATAAGGTCCTATGAAATGAGG
1 TAGGCCACAGGCCCTACTCTCTCGGTAACCTCATAAGGTCCTATGAAACGAGG
51014498 TAGGCCACAGGCCCTACTCTCTCGGTAACCTCATAAGGTCCTATGAAACGAGG
1 TAGGCCACAGGCCCTACTCTCTCGGTAACCTCATAAGGTCCTATGAAACGAGG
51014551 ACTTAACTTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (53 bp):
TAGGCCACAGGCCCTACTCTCTCGGTAACCTCATAAGGTCCTATGAAACGAGG
Found at i:51018987 original size:30 final size:30
Alignment explanation
Indices: 51018951--51019009 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
51018941 TATAGGCTGG
*
51018951 AATGTGTTTTAAAATGATGAACTTTGGTTT
1 AATGTGTCTTAAAATGATGAACTTTGGTTT
51018981 AATGTGTCTTAAAATGATGAACTTTGGTT
1 AATGTGTCTTAAAATGATGAACTTTGGTT
51019010 ATGTACTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.44
Consensus pattern (30 bp):
AATGTGTCTTAAAATGATGAACTTTGGTTT
Found at i:51030335 original size:9 final size:9
Alignment explanation
Indices: 51030313--51030341 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
51030303 GTTGAGGAAT
51030313 TGGGGGAGG
1 TGGGGGAGG
51030322 T-GGGGAGG
1 TGGGGGAGG
51030330 TGGGGGAGG
1 TGGGGGAGG
51030339 TGG
1 TGG
51030342 AGTATTCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.10, C:0.00, G:0.76, T:0.14
Consensus pattern (9 bp):
TGGGGGAGG
Found at i:51033174 original size:80 final size:80
Alignment explanation
Indices: 51033090--51033238 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
51033080 TATGGTAACC
* * * *
51033090 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
51033154 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
51033170 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
51033235 CCGG
66 CCGG
51033239 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:51033180 original size:40 final size:38
Alignment explanation
Indices: 51033131--51033238 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
51033121 ATCACGATTT
*
51033131 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
51033171 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
51033211 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
51033239 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:51041291 original size:80 final size:80
Alignment explanation
Indices: 51041207--51041355 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
51041197 TATGGTAACC
* * * *
51041207 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
51041271 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
51041287 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
51041352 CCGG
66 CCGG
51041356 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:51041297 original size:40 final size:38
Alignment explanation
Indices: 51041248--51041355 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
51041238 ATCACGATTT
*
51041248 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
51041288 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
51041328 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
51041356 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:51043743 original size:48 final size:47
Alignment explanation
Indices: 51043432--51043752 Score: 200
Period size: 48 Copynumber: 6.8 Consensus size: 47
51043422 GTATAATGCA
* *
51043432 GATGCCA--TCCCAGACATGGTCTTACACTAGCTCAT-GTCTCAAGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCGTCTCAAGCC
* *
51043477 GAT-CCATGTCCCAAACATGGTC-TACACT-GACTATCGTCATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTCGTC-TC-AAGCC
* * * * **
51043524 AATGCCATGTCCCAAACATGGTCTTACAATAGCTCTTGCATATCTGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTC-T-CGTCTC-AAGCC
* * * *
51043574 GATGCTATGTCCTAGACATGGTCTTACACT-GACAC-C-TCT-ATACGTACC
1 GATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTCGTCTCA-A-G--CC
* * * * *
51043622 AATGCCATGTCCCAAACATGGTCTTACACTGGCT-TACTTCACGAGACC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CGTCTCAAG-CC
* *
51043670 GATG-CATGTTCCAAACAT-GTCTTACACTAGCTCTCGTCTCAATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAA-GCC
* * *
51043716 GATGCCATGTCCCAGATATGGTCTTACACTGGCTCTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC
51043753 ATAATGTCGT
Statistics
Matches: 212, Mismatches: 39, Indels: 47
0.71 0.13 0.16
Matches are distributed among these distances:
44 5 0.02
45 14 0.07
46 41 0.19
47 32 0.15
48 70 0.33
49 11 0.05
50 37 0.17
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAAGCC
Found at i:51050845 original size:40 final size:40
Alignment explanation
Indices: 51050800--51050965 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
51050790 CGGAATATAA
51050800 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51050840 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
51050880 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51050919 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51050958 CCGGATAT
1 CCGGATAT
51050966 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51050922 original size:39 final size:38
Alignment explanation
Indices: 51050816--51050927 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
51050806 ATAATCACGT
* * *
51050816 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
51050856 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
51050895 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
51050928 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:51050949 original size:79 final size:78
Alignment explanation
Indices: 51050816--51050965 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
51050806 ATAATCACGT
*
51050816 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
51050881 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
51050895 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
51050958 CCGGATAT
64 CCGGATAT
51050966 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:51051810 original size:17 final size:19
Alignment explanation
Indices: 51051787--51051832 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51051777 AAGAAGCATG
51051787 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51051805 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51051823 AATCATGCTC
1 AATCATGCTC
51051833 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51053054 original size:29 final size:29
Alignment explanation
Indices: 51053030--51053094 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
51053020 TCGCACACCC
51053030 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51053059 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51053088 AGTGCCA
1 AGTGCCA
51053095 ATCTCGTCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:51056679 original size:40 final size:39
Alignment explanation
Indices: 51056634--51056841 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
51056624 CGGAATACAA
*
51056634 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51056674 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51056714 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
51056754 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
51056794 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
51056834 CCGGATAT
1 CCGGATAT
51056842 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51056774 original size:80 final size:80
Alignment explanation
Indices: 51056634--51056840 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
51056624 CGGAATACAA
* * *
51056634 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
51056698 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
51056714 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
51056778 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
51056794 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
51056841 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:51064203 original size:29 final size:29
Alignment explanation
Indices: 51064179--51064243 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
51064169 TCGCACACCC
51064179 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51064208 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51064237 AGTGCCA
1 AGTGCCA
51064244 ATGTCGTCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:51065669 original size:10 final size:10
Alignment explanation
Indices: 51065654--51065699 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
51065644 AGGTCACTTG
51065654 AGCTCGTTTC
1 AGCTCGTTTC
*
51065664 AGCTCGTTTG
1 AGCTCGTTTC
* *
51065674 AGCTTGATTTT
1 AGCTCG-TTTC
51065685 AGCTCGTTTC
1 AGCTCGTTTC
51065695 AGCTC
1 AGCTC
51065700 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.41
Consensus pattern (10 bp):
AGCTCGTTTC
Found at i:51065690 original size:21 final size:20
Alignment explanation
Indices: 51065651--51065699 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
51065641 ATCAGGTCAC
51065651 TTGAGCTCGTTTCAGCTCGT
1 TTGAGCTCGTTTCAGCTCGT
* *
51065671 TTGAGCTTGATTTTAGCTCGT
1 TTGAGCTCG-TTTCAGCTCGT
*
51065692 TTCAGCTC
1 TTGAGCTC
51065700 ATTCCTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.43
Consensus pattern (20 bp):
TTGAGCTCGTTTCAGCTCGT
Found at i:51067464 original size:29 final size:29
Alignment explanation
Indices: 51067425--51067489 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
51067415 CTCGCACACC
*
51067425 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51067454 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
51067483 AGTGCCA
1 AGTGCCA
51067490 ATGTCGTCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:51070336 original size:46 final size:46
Alignment explanation
Indices: 51070286--51070458 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
51070276 TGGTTGAGCA
51070286 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
51070332 TCCGAACTCGTTGAGTTGAGTCCGAATTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
51070377 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
51070425 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51070459 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.56
47 27 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:51070720 original size:19 final size:20
Alignment explanation
Indices: 51070683--51070720 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
51070673 ATAAGGTGGT
51070683 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
51070703 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
51070721 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:51074646 original size:47 final size:47
Alignment explanation
Indices: 51074577--51075014 Score: 678
Period size: 47 Copynumber: 9.3 Consensus size: 47
51074567 CTCTTCGGGA
* * * * * *
51074577 CTTATCACATTTATACACTTTCACATCCATCGCATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51074624 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51074671 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51074718 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
51074765 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51074812 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
51074859 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
51074906 CTTATCACATATATACACTTTCACATTCATTGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51074953 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51075000 CTTATCACATATATA
1 CTTATCACATATATA
51075015 TATCTCATAC
Statistics
Matches: 361, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 361 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51074655 original size:25 final size:25
Alignment explanation
Indices: 51074627--51074705 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
51074617 ACTCGGCCTT
*
51074627 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
51074652 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
51074674 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
51074699 ATCACAT
1 ATCACAT
51074706 GGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:51090455 original size:47 final size:46
Alignment explanation
Indices: 51090386--51090607 Score: 207
Period size: 47 Copynumber: 4.7 Consensus size: 46
51090376 GATTTGTGCA
*
51090386 CCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAG
* * * *
51090432 CCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCCA-GACGAGGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATTATGAGAG
* * * * *
51090480 CTAGTGTAAGATATGTCTGGGACATGCTTCAGCCATATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAG
* * ** *
51090526 CCAGTGTAAGACCATGTTTGGGAGATGGCATCGG-CACAGAAATGAGTG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-TTATGAGAG
* *
51090574 CCAGAGTAGGACATGTCTGGGACATGCATCGGCC
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCC
51090608 TCAACAGAGA
Statistics
Matches: 140, Mismatches: 26, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 39 0.28
47 58 0.41
48 40 0.29
49 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAG
Found at i:51090590 original size:94 final size:93
Alignment explanation
Indices: 51090386--51090600 Score: 297
Period size: 94 Copynumber: 2.3 Consensus size: 93
51090376 GATTTGTGCA
*
51090386 CCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
51090451 GGGACATGGCATCAGCATCCAGACGAGGG
66 GGGACATGGCATCAGCA-CCAGACGAGGG
* * * *
51090480 CTAGTGTAAGATATGTCTGGGACATGCTTCAGCCATATTATGAGAGCCAGTGTAAGACCATGTTT
1 CCAGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
* * * *
51090545 GGGAGATGGCATCGGCA-CAGAAATGAGTG
66 GGGACATGGCATCAGCACCAG--ACGAGGG
* *
51090574 CCAGAGTAGGACATGTCTGGGACATGC
1 CCAGTGTAAGACATGTCTGGGACATGC
51090601 ATCGGCCTCA
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
92 3 0.03
94 103 0.97
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (93 bp):
CCAGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCAGCACCAGACGAGGG
Found at i:51092493 original size:23 final size:24
Alignment explanation
Indices: 51092459--51092513 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
51092449 AATTATTTTC
* *
51092459 ACTCCCTTTTAGCCGAATTC-TGG
1 ACTCCCTATTAGCCAAATTCTTGG
*
51092482 ACTCCCTATTAGCTAAATTCTTGG
1 ACTCCCTATTAGCCAAATTCTTGG
51092506 A-TCCCTAT
1 ACTCCCTAT
51092514 ACTCTTTCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 24 0.86
24 4 0.14
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (24 bp):
ACTCCCTATTAGCCAAATTCTTGG
Found at i:51093430 original size:27 final size:27
Alignment explanation
Indices: 51093310--51093428 Score: 168
Period size: 27 Copynumber: 4.4 Consensus size: 27
51093300 CCCTCAAATT
* *
51093310 GGTAAAATGATAGTTTTGCCCTTATGA
1 GGTAAAATGACAGTTTTGCCTTTATGA
*
51093337 GGTAAAATGACAGTATTGCCTTTATGA
1 GGTAAAATGACAGTTTTGCCTTTATGA
51093364 GGTAAAATGACAGTTTTGCCTTTATGA
1 GGTAAAATGACAGTTTTGCCTTTATGA
***
51093391 GGTAAAATGACTA-TTTTGGAGTTATGA
1 GGTAAAATGAC-AGTTTTGCCTTTATGA
51093418 GGTAAAATGAC
1 GGTAAAATGAC
51093429 TACCCCTAAC
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (27 bp):
GGTAAAATGACAGTTTTGCCTTTATGA
Found at i:51107285 original size:137 final size:137
Alignment explanation
Indices: 51107034--51107312 Score: 382
Period size: 137 Copynumber: 2.0 Consensus size: 137
51107024 TTCTCGTTTT
* * * *
51107034 GGGGTGCTCCTGTATTGTTTGTGAAAAAGAAAGATGGCATGATGAGAATGTGTATAGACTACCGA
1 GGGGCGCTCCTGTATTGTTTGTGAAAAAGAAAGATGGCACGATAAGAATGTGTATAAACTACCGA
* * * ** *
51107099 CAACTTAACAAAGTGACTATTAAAAACAATTATCCTTCGCTGCGAATTGATGATTTATTTGATCA
66 CAACTTAAAAAAGTGACTATTAAAAACAAATATCCTTCACCACGAATTGATGATTTATTTGATAA
51107164 ATTGAAA
131 ATTGAAA
* *
51107171 GGGGCGCTCCTGTATTGTTTGTGAAAAAGAAAGATGGCACGATAAGAATGTGTATAAACTACTGT
1 GGGGCGCTCCTGTATTGTTTGTGAAAAAGAAAGATGGCACGATAAGAATGTGTATAAACTACCGA
* * * *
51107236 CAGCTTAAAAAAGTGA-TGATTAAGAAA-AAATATCTTTTACCATGAATTGATGATTTATTTGAT
66 CAACTTAAAAAAGTGACT-ATTAA-AAACAAATATCCTTCACCACGAATTGATGATTTATTTGAT
51107299 AAATTGAAA
129 AAATTGAAA
51107308 GGGGC
1 GGGGC
51107313 TACAACGTTT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
136 1 0.01
137 120 0.97
138 3 0.02
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.30
Consensus pattern (137 bp):
GGGGCGCTCCTGTATTGTTTGTGAAAAAGAAAGATGGCACGATAAGAATGTGTATAAACTACCGA
CAACTTAAAAAAGTGACTATTAAAAACAAATATCCTTCACCACGAATTGATGATTTATTTGATAA
ATTGAAA
Found at i:51111966 original size:40 final size:40
Alignment explanation
Indices: 51111911--51112114 Score: 194
Period size: 40 Copynumber: 5.1 Consensus size: 40
51111901 TGAATGATAC
* * *
51111911 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
* *
51111951 CCGGGTTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATAT
* ** * *
51111991 CTGGGCTAAGACCCGAAGGCATGCGTGCGAGCGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
* * * ** *
51112031 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
* * * ** *
51112071 CTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
51112111 CCGG
1 CCGG
51112115 TTAAATCCTG
Statistics
Matches: 132, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 129 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
Found at i:51112107 original size:80 final size:80
Alignment explanation
Indices: 51111913--51112114 Score: 228
Period size: 80 Copynumber: 2.5 Consensus size: 80
51111903 AATGATACCC
* * * * *
51111913 GGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCATTCGTG
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCGTG
* **** *
51111978 CGAGTTGTTATATCT
66 CAAGTCACCAAATCT
* * *
51111993 GGGCTAAGACCCGAAGGC-ATGCGTGCGAGCGGTTATATCCGGGCTAAGACCCGAAGGCAATT-G
1 GGGCTAAGACCCGAAGGCAAT-TGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGC-ATTCG
51112056 TGCAAGTCACCAAATCT
64 TGCAAGTCACCAAATCT
* *
51112073 GGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGG
51112115 TTAAATCCTG
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
79 1 0.01
80 94 0.94
81 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
GGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCGTG
CAAGTCACCAAATCT
Found at i:51114130 original size:28 final size:28
Alignment explanation
Indices: 51114087--51114153 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
51114077 TATAGTAAAT
* *
51114087 TCGCACACTTAGTGCT-TAATAATCAAAC
1 TCGCACACTTAATGCTAT-ACAATCAAAC
*
51114115 TCGCACACTTAATGCTATACAATTAAAC
1 TCGCACACTTAATGCTATACAATCAAAC
*
51114143 TCACACACTTA
1 TCGCACACTTA
51114154 GTGCCAATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 33 0.97
29 1 0.03
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAATGCTATACAATCAAAC
Found at i:51120218 original size:40 final size:40
Alignment explanation
Indices: 51120142--51120363 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
51120132 CAAACTCAAG
* * * *
51120142 TGCCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAA
* *
51120181 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* *
51120221 AGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
51120261 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* *
51120301 TGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
*
51120341 TGCC-TC-GGACTTAACCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
51120364 CATTCGAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 16 0.10
39 16 0.10
40 131 0.79
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
Found at i:51128703 original size:40 final size:40
Alignment explanation
Indices: 51128627--51128850 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
51128617 CAAACTCAAG
* * * *
51128627 TGCCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAA
* *
51128666 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* *
51128706 AGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
51128746 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* *
51128786 TGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAA
1 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* * *
51128826 TACCCTCGGGACTTAACCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
51128851 CATTCGAATA
Statistics
Matches: 166, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.08
40 149 0.90
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
Found at i:51133283 original size:43 final size:43
Alignment explanation
Indices: 51133217--51133373 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
51133207 CTCGTACAAA
* *
51133217 GCCAATGTCCCATACATGGTCTTACATGTAATCAAATATCGAT
1 GCCACTGTCCCAGACATGGTCTTACATGTAATCAAATATCGAT
* * *
51133260 GCCACTGTCCCAAACATGGTCTTAGATGTAATCATATAT-GAT
1 GCCACTGTCCCAGACATGGTCTTACATGTAATCAAATATCGAT
* * *
51133302 GCTGA-TG-CCCTAGACATGGTCTTACACGTAAATCTCAA-ATCGAT
1 GC-CACTGTCCC-AGACATGGTCTTACATGT-AATC-AAATATCGAT
51133346 GCCAAC-GTCCCAGACATGGTCTTACATG
1 GCC-ACTGTCCCAGACATGGTCTTACATG
51133374 AAGTCTCATA
Statistics
Matches: 94, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.03
42 22 0.23
43 42 0.45
44 24 0.26
45 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
GCCACTGTCCCAGACATGGTCTTACATGTAATCAAATATCGAT
Found at i:51136701 original size:43 final size:43
Alignment explanation
Indices: 51136647--51136775 Score: 163
Period size: 43 Copynumber: 3.0 Consensus size: 43
51136637 ATATCGTACA
* * *
51136647 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGGAATCACATATCG
** *
51136690 ATGCCACTGTCCCAGACAAGGTCTTACACGGAATCACTTATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGGAATCACATATCG
*
51136733 ATGCCAAC-GTCCCAGACGTGGTCTTACACAAGAA-CACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACAC-GGAATCACATATCG
51136776 GAAATCCTAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 69 0.93
44 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGGAATCACATATCG
Found at i:51140819 original size:13 final size:13
Alignment explanation
Indices: 51140801--51140825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51140791 GTAAGTGATT
51140801 TTGATGATTTTTC
1 TTGATGATTTTTC
51140814 TTGATGATTTTT
1 TTGATGATTTTT
51140826 GTACATATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:51141585 original size:48 final size:47
Alignment explanation
Indices: 51141533--51141857 Score: 234
Period size: 47 Copynumber: 6.8 Consensus size: 47
51141523 ACGACATTAT
* *
51141533 GAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGACATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGAC-TTGAGAC
* * * * * *
51141581 GAGAGCTAGTGTAAGA-CATGTTTGGAACAT-GCATCGGTCTCGTGAA
1 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GACTTGAGAC
*
51141627 GTA-AGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGTACGTAT-AGA-
1 G-AGAGCCAGTGTAAGACCATGTTTGGGACATGGCA-TCG-AC-T-TGAGAC
* * * * * * *
51141676 G-GTGTCAGTGTAAGACCATGTCTAGGACATAGCATCGGCAC-AGATATGC
1 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-G-ACTTGAGA--C
* * * * * *
51141725 AAGAGCTATTGTAAGACCATGTTTGGGACATGGCATTGGCCTCGATGAC
1 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCA-TCGACTTGA-GAC
* *
51141774 GATAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGAC
1 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGAC
* *
51141821 -ATGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GA-GAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
51141858 TGCATTATAC
Statistics
Matches: 211, Mismatches: 47, Indels: 39
0.71 0.16 0.13
Matches are distributed among these distances:
46 25 0.12
47 62 0.29
48 55 0.26
49 35 0.17
50 32 0.15
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGAC
Found at i:51141805 original size:147 final size:142
Alignment explanation
Indices: 51141539--51141809 Score: 355
Period size: 147 Copynumber: 1.9 Consensus size: 142
51141529 TTATGAGAGC
* * ** *
51141539 CAGTGTAAGACCATATCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTTT
1 CAGTGTAAGACCATATCTAGGACATAGCATCGACACAGAGACAAGAGCTAGTGTAAGACATGTTT
*
51141604 GGAACATGCATCGGTCTCGTGAAGTAAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGTAC
66 GGAACATGCATCGGCCTCGTGAAGTAAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGTAC
51141669 GTATAGAGGTGT
131 GTATAGAGGTGT
* * * *
51141681 CAGTGTAAGACCATGTCTAGGACATAGCATCGGCACAGATATGCAAGAGCTATTGTAAGACCATG
1 CAGTGTAAGACCATATCTAGGACATAGCATCGACACAGAGA--CAAGAGCTAGTGTAAGA-CATG
* * * *
51141746 TTTGGGACATGGCATTGGCCTCGATGACG-ATAGTCAGTGTAAGACCATGTTTGGGACATGGCAT
63 TTTGGAACAT-GCATCGGCCTCG-TGAAGTA-AGCCAGTGTAAGACCATGTTTGGGACATGGCAT
51141810 CGACTTGAGA
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
142 34 0.31
144 15 0.14
145 13 0.12
146 11 0.10
147 36 0.33
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (142 bp):
CAGTGTAAGACCATATCTAGGACATAGCATCGACACAGAGACAAGAGCTAGTGTAAGACATGTTT
GGAACATGCATCGGCCTCGTGAAGTAAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGTAC
GTATAGAGGTGT
Found at i:51141811 original size:99 final size:95
Alignment explanation
Indices: 51141634--51141856 Score: 265
Period size: 98 Copynumber: 2.3 Consensus size: 95
51141624 GAAGTAAGCC
*
51141634 AGTGTAAGACCATGTTTGGGACATGGCATTGGTACGTATAGAGGTGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGGACATGGCATTGGTACGTATAGAGATGTCAGTGTAAGACCATGTCT
*
51141699 AGGACATAGCATCGGCAC-AGATATGCAAGAGCT
66 AGGACATAGCATC-G-ACTAGAGA--CAAGAGCT
*
51141732 ATTGTAAGACCATGTTTGGGACATGGCATTGGCCT-CG-AT-GACGATAGTCAGTGTAAGACCAT
1 AGTGTAAGACCATGTTTGGGACATGGCATTGG--TACGTATAGA-GAT-GTCAGTGTAAGACCAT
* * * * *
51141794 GTTTGGGACATGGCATCGACTTGAGACATGAGCT
62 GTCTAGGACATAGCATCGACTAGAGACAAGAGCT
*
51141828 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTTTGGGACATGGCAT
51141857 CTGCATTATA
Statistics
Matches: 110, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
96 34 0.31
97 4 0.04
98 39 0.35
99 32 0.29
100 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (95 bp):
AGTGTAAGACCATGTTTGGGACATGGCATTGGTACGTATAGAGATGTCAGTGTAAGACCATGTCT
AGGACATAGCATCGACTAGAGACAAGAGCT
Found at i:51144061 original size:40 final size:39
Alignment explanation
Indices: 51143896--51144079 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51143886 AAATTGAATG
* * *
51143896 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51143936 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51143976 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51144016 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51144055 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51144080 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51144104 original size:80 final size:81
Alignment explanation
Indices: 51143936--51144124 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51143926 GCTGGAAATT
* * * *
51143936 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51144001 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51144017 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51144080 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51144096 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51144125 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51152180 original size:40 final size:39
Alignment explanation
Indices: 51152015--51152198 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51152005 AAATTGAATG
* * *
51152015 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51152055 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51152095 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51152135 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51152174 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51152199 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51152223 original size:80 final size:81
Alignment explanation
Indices: 51152055--51152243 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51152045 GCTGGAAATT
* * * *
51152055 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51152120 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51152136 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51152199 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51152215 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51152244 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51155116 original size:27 final size:28
Alignment explanation
Indices: 51155060--51155129 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
51155050 TTGTGATCAT
51155060 GCACTAAGTGTGCGAGTTTTGATCATATA
1 GCACTAAGTGTGCGAG-TTTGATCATATA
*
51155089 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATCATATA
51155116 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51155130 GACTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 24 0.60
29 16 0.40
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATCATATA
Found at i:51155140 original size:27 final size:27
Alignment explanation
Indices: 51155084--51155141 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
51155074 AGTTTTGATC
* * *
51155084 ATATAGCACTAAGTGTGCGAGTTGATT
1 ATATAGCACTAAGTGTGCGAGCTCACT
51155111 ATATAGCACTAAGTGTGCG-GACTCACT
1 ATATAGCACTAAGTGTGCGAG-CTCACT
51155138 ATAT
1 ATAT
51155142 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAGCTCACT
Found at i:51163061 original size:27 final size:28
Alignment explanation
Indices: 51163005--51163074 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
51162995 AAACTTGTAC
51163005 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
51163033 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
51163060 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51163075 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:51163085 original size:27 final size:27
Alignment explanation
Indices: 51163005--51163086 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
51162995 AAACTTGTAC
* *
51163005 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
51163033 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
51163060 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
51163087 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:51165246 original size:21 final size:19
Alignment explanation
Indices: 51165215--51165264 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
51165205 TCTCTCTTAA
51165215 CAAAAA-TTATAAAATAATT
1 CAAAAATTTATAAAA-AATT
51165234 CAAAATATTTAT-AAAAATT
1 CAAAA-ATTTATAAAAAATT
*
51165253 CTAAAATTTATA
1 CAAAAATTTATA
51165265 TTTTTTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 6 0.22
19 13 0.48
20 4 0.15
21 4 0.15
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
CAAAAATTTATAAAAAATT
Found at i:51165296 original size:20 final size:20
Alignment explanation
Indices: 51165271--51165310 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51165261 TATATTTTTT
51165271 AAAAAATGATAAA-AATATTA
1 AAAAAAT-ATAAAGAATATTA
*
51165291 AAAAAATCTAAAGAATATTA
1 AAAAAATATAAAGAATATTA
51165311 CAATACCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.25
Consensus pattern (20 bp):
AAAAAATATAAAGAATATTA
Found at i:51169775 original size:2 final size:2
Alignment explanation
Indices: 51169758--51169791 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
51169748 ACCATCAGTC
* *
51169758 AT AT GT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51169792 CGGTAATCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:51174507 original size:15 final size:15
Alignment explanation
Indices: 51174487--51174522 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
51174477 CAAAAAGATC
51174487 TGTGGTAAAGTGGCA
1 TGTGGTAAAGTGGCA
51174502 TGTGGTAAAGTGGCA
1 TGTGGTAAAGTGGCA
51174517 TGTGGT
1 TGTGGT
51174523 GCCACTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.06, G:0.42, T:0.31
Consensus pattern (15 bp):
TGTGGTAAAGTGGCA
Found at i:51176374 original size:20 final size:20
Alignment explanation
Indices: 51176337--51176381 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
51176327 CTATTTTATT
*
51176337 ATGGG-CCAATTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
51176356 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
51176376 ATGGGC
1 ATGGGC
51176382 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:51176440 original size:60 final size:59
Alignment explanation
Indices: 51176372--51176510 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 59
51176362 CCAACTGTGT
* *
51176372 TGATATGGGCAAGGCCCAATATATCTCGACT-TGTAATAGGGCTACT-GCCCAGATTGATAC
1 TGATATGGGCAAGGCCCAATATA-CTCGAATATGTAA-AGGGCTA-TGGCCCAGATTAATAC
* * * * *
51176432 TGATATGGGCTAGGCCCAGTATACTCTAATACTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCAAGGCCCAATATACTCGAATA-TGTAAAGGGCTATGGCCCAGATTAATAC
51176492 TGATATGGGCTAAGGCCCA
1 TGATATGGGC-AAGGCCCA
51176511 GATAGCTCTG
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
59 6 0.09
60 49 0.73
61 12 0.18
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (59 bp):
TGATATGGGCAAGGCCCAATATACTCGAATATGTAAAGGGCTATGGCCCAGATTAATAC
Found at i:51176501 original size:28 final size:28
Alignment explanation
Indices: 51176410--51176513 Score: 88
Period size: 28 Copynumber: 3.6 Consensus size: 28
51176400 ACTTGTAATA
*
51176410 GGGCTACT-GCCCAGATTGATACTGATAT
1 GGGCTA-TGGCCCAGATTAATACTGATAT
*
51176438 GGGCTA-GGCCCAGTATACTCTAATACTG-TAAG
1 GGGCTATGGCCCAG---A-T-TAATACTGAT-AT
*
51176470 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTATGGCCCAGATTAATACTGATAT
*
51176498 GGGCTAAGGCCCAGAT
1 GGGCTATGGCCCAGAT
51176514 AGCTCTGATT
Statistics
Matches: 62, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
27 6 0.10
28 29 0.47
29 2 0.03
30 2 0.03
31 2 0.03
32 14 0.23
33 7 0.11
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (28 bp):
GGGCTATGGCCCAGATTAATACTGATAT
Found at i:51179487 original size:2 final size:2
Alignment explanation
Indices: 51179480--51179504 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51179470 TTACATAAAC
51179480 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
51179505 CCATATGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51182536 original size:23 final size:23
Alignment explanation
Indices: 51182510--51182560 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
51182500 ACCAATATCG
51182510 GGTAACTTAAAAAAACATTATGA
1 GGTAACTTAAAAAAACATTATGA
51182533 GGTAACTTAAAAAAACATTATGA
1 GGTAACTTAAAAAAACATTATGA
51182556 GGTAA
1 GGTAA
51182561 AAGTATTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.51, C:0.08, G:0.16, T:0.25
Consensus pattern (23 bp):
GGTAACTTAAAAAAACATTATGA
Found at i:51183689 original size:3 final size:3
Alignment explanation
Indices: 51183681--51183709 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51183671 TCAAAAAGAC
51183681 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51183710 AAGAGAAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:51192382 original size:18 final size:16
Alignment explanation
Indices: 51192355--51192444 Score: 64
Period size: 18 Copynumber: 5.7 Consensus size: 16
51192345 TTCAAAATAT
51192355 TTATAAATTTTTAAAAA
1 TTATAAA-TTTTAAAAA
*
51192372 TATATATATTTTAAAAA
1 T-TATAAATTTTAAAAA
*
51192389 TTATAAAAATTTCAAAAA
1 TTAT--AAATTTTAAAAA
51192407 --A-AAATTTTAAAAA
1 TTATAAATTTTAAAAA
* *
51192420 --ATAAAGTTAAAAAA
1 TTATAAATTTTAAAAA
*
51192434 TTAAAAATTTT
1 TTATAAATTTT
51192445 CTAGGATAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
13 12 0.21
14 10 0.17
16 10 0.17
17 11 0.19
18 15 0.26
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (16 bp):
TTATAAATTTTAAAAA
Found at i:51192776 original size:20 final size:20
Alignment explanation
Indices: 51192747--51192785 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
51192737 ATTTTAAAAT
*
51192747 CAAGTTAAAATGATTTTAAC
1 CAAGTCAAAATGATTTTAAC
51192767 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
51192786 AATGATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
CAAGTCAAAATGATTTTAAC
Found at i:51192807 original size:30 final size:31
Alignment explanation
Indices: 51192742--51192815 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
51192732 AAATAATTTT
** *
51192742 AAAATCAAGTTAAAATGATTTTAACCAAGTC
1 AAAATCATTTTAAAATGATTTCAACCAAGTC
* * *
51192773 AAAATGATTTTAAAATGA-TTCAATCAAGTT
1 AAAATCATTTTAAAATGATTTCAACCAAGTC
51192803 AAAATCATTTTAA
1 AAAATCATTTTAA
51192816 CATATCAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 21 0.58
31 15 0.42
ACGTcount: A:0.49, C:0.09, G:0.08, T:0.34
Consensus pattern (31 bp):
AAAATCATTTTAAAATGATTTCAACCAAGTC
Found at i:51194905 original size:28 final size:28
Alignment explanation
Indices: 51194866--51194939 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
51194856 GTTCAAATTG
* *
51194866 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
51194894 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
51194922 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
51194940 GGCTTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:51196689 original size:20 final size:18
Alignment explanation
Indices: 51196664--51196700 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
51196654 ATTACTAAGT
51196664 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
51196684 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
51196701 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:51198551 original size:50 final size:50
Alignment explanation
Indices: 51198493--51198597 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
51198483 TTTTAATGTG
51198493 AGTA-TGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
51198542 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
51198592 AGTATT
1 AGTATT
51198598 AGTCATGTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 4 0.07
50 51 0.93
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (50 bp):
AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
Found at i:51200248 original size:21 final size:21
Alignment explanation
Indices: 51200224--51200265 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51200214 TAAAAAAATA
51200224 AGATTTATCAACTAAAAATTT
1 AGATTTATCAACTAAAAATTT
* * *
51200245 AGATTTGTCAAGTAGAAATTT
1 AGATTTATCAACTAAAAATTT
51200266 TTTCACCCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (21 bp):
AGATTTATCAACTAAAAATTT
Found at i:51201817 original size:23 final size:22
Alignment explanation
Indices: 51201784--51201859 Score: 82
Period size: 23 Copynumber: 3.4 Consensus size: 22
51201774 TAGGTGTTAT
*
51201784 AGAATATACCACAAAGGCTCTAC
1 AGAATA-ACCACAAAGGCTCCAC
*
51201807 AGAATACACCATAAAGGCTCCAC
1 AGAATA-ACCACAAAGGCTCCAC
* *
51201830 ATAATAAGCCACAAAAGCTCCAC
1 AGAATAA-CCACAAAGGCTCCAC
51201853 A-AATAAC
1 AGAATAAC
51201860 TTACTGCTCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.02
22 6 0.13
23 39 0.85
ACGTcount: A:0.47, C:0.28, G:0.11, T:0.14
Consensus pattern (22 bp):
AGAATAACCACAAAGGCTCCAC
Found at i:51202693 original size:12 final size:12
Alignment explanation
Indices: 51202676--51202705 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
51202666 CCCCAAACGC
51202676 CTGTGTGCTAGG
1 CTGTGTGCTAGG
51202688 CTGTGTGCTAGG
1 CTGTGTGCTAGG
*
51202700 CCGTGT
1 CTGTGT
51202706 AACTGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.20, G:0.40, T:0.33
Consensus pattern (12 bp):
CTGTGTGCTAGG
Found at i:51209391 original size:40 final size:40
Alignment explanation
Indices: 51209336--51209585 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
51209326 AACATTGGAA
51209336 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51209376 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51209416 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51209456 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51209496 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51209535 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51209576 CTATATCCGG
1 ATATATCCGG
51209586 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51217493 original size:40 final size:40
Alignment explanation
Indices: 51217438--51217687 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
51217428 AACATTGGAA
51217438 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51217478 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51217518 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51217558 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51217598 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51217637 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51217678 CTATATCCGG
1 ATATATCCGG
51217688 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51227732 original size:57 final size:56
Alignment explanation
Indices: 51227662--51227792 Score: 183
Period size: 57 Copynumber: 2.3 Consensus size: 56
51227652 GTCGATTTTG
*
51227662 AAAATGGCACTTAGTGTGCGAGTTA-CTGAGGATGGCACTTAGTGTGCGAAACATCC
1 AAAATGGCACTTAGTGTGCGAATTATC-GAGGATGGCACTTAGTGTGCGAAACATCC
* * * *
51227718 AGAAATGGCTCTTAGTGAGCGAATTATCGAGGATGGCACTTAGTGTGCTAGACATCC
1 A-AAATGGCACTTAGTGTGCGAATTATCGAGGATGGCACTTAGTGTGCGAAACATCC
*
51227775 AAGATGGCACTTAGTGTG
1 AAAATGGCACTTAGTGTG
51227793 TGATACATCC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
56 15 0.23
57 49 0.75
58 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (56 bp):
AAAATGGCACTTAGTGTGCGAATTATCGAGGATGGCACTTAGTGTGCGAAACATCC
Found at i:51227762 original size:28 final size:28
Alignment explanation
Indices: 51227665--51227792 Score: 116
Period size: 28 Copynumber: 4.5 Consensus size: 28
51227655 GATTTTGAAA
*
51227665 ATGGCACTTAGTGTGCGAGTTA-CTGAGG
1 ATGGCACTTAGTGTGCGAATTATC-GAGG
** * *
51227693 ATGGCACTTAGTGTGCGAAACATCCAGAA
1 ATGGCACTTAGTGTGCGAATTATCGAG-G
* *
51227722 ATGGCTCTTAGTGAGCGAATTATCGAGG
1 ATGGCACTTAGTGTGCGAATTATCGAGG
* * * *
51227750 ATGGCACTTAGTGTGCTAGA-CATCCAAG
1 ATGGCACTTAGTGTGCGA-ATTATCGAGG
51227778 ATGGCACTTAGTGTG
1 ATGGCACTTAGTGTG
51227793 TGATACATCC
Statistics
Matches: 80, Mismatches: 17, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
28 56 0.70
29 24 0.30
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAATTATCGAGG
Found at i:51227811 original size:28 final size:28
Alignment explanation
Indices: 51227752--51227819 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
51227742 TATCGAGGAT
*
51227752 GGCACTTAGTGTGCTAGACATCCAAGAT
1 GGCACTTAGTGTGCTAGACATCCAAGAA
* **
51227780 GGCACTTAGTGTG-TGATACATCCGTGAA
1 GGCACTTAGTGTGCT-AGACATCCAAGAA
*
51227808 GGCACTGAGTGT
1 GGCACTTAGTGT
51227820 CCGAAGCTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (28 bp):
GGCACTTAGTGTGCTAGACATCCAAGAA
Found at i:51233720 original size:835 final size:830
Alignment explanation
Indices: 51231906--51234406 Score: 3438
Period size: 835 Copynumber: 3.0 Consensus size: 830
51231896 TGGGCTCTAG
* * *
51231906 ATGAAGAATCAAGTATATTAAGATGATTTGAACCATTCTTGGATGAAAAGATGATGTCAAATAAA
1 ATGAAGAATCAAGTATATTAAGATGATTTGAAGCATTCTTGGATGAAAAGATGATGTCGAATCAA
* * * * * *
51231971 TATCTAAACAAAATAAATAAAACCAATTAGATTTTTTGTTAAAAGAAA-GAAAAAGAAAACCAAA
66 GATCTAAACAAAAGAAATAAAACAAATTAGA-TTTCTGTTAAAAAAAATGAAAAAGTAAACCAAA
* * * * * * * * * * *
51232035 CAGCACGGAAAGAGAGAGATAGCCAAAGAGAAGTCCAAGAAAGAGTGGGAAATGGTTTCGTGGCT
130 CAACATGGAAGGAGAGAGGTAGGCAAAGAGAAGTACAAGAACGACTGGGATATGGTTTCTTGGAT
** * * *
51232100 GAG-AAGAAACAATTCTTGAACCAAAAGAAGGCCTCCAACTAGTTCTAAAATTGAGATAAGAAAA
195 GAGAAAGAAAC-ATTCTTGAACCAAAAGAAGGCCTAAAACTAGATCTAAAATTGAAAGAAGAAAA
* * * ** * * * * * *
51232164 TAGATTATCAGAATGGATTTTTAAGTAAGAAAATAATTATTTTGTGGTAAAAGTAATTGACACAA
259 CAGATTGTTAGAATGGATTTTTAAGCCATAAAA-AATTGTTTTGTGATAAAAGCAATCGTCACAA
* * * *
51232229 TAAGAAAAGAAGAGATTTCCTAGTTTTTAATGGTTCTTTGTGTATTAAGAAGGGGGGAATGTCTT
323 TAAGAAAAGAAGAGACTTCCTAGTTTTCAATGGTTCTTGGTGTATTAAGAAGGGGAGAATGTCTT
* *
51232294 TTCTTGTTGATTCCTGATATGGAAGTAAAGAAATAAAAGATTAGAAATAAACAAACAAGAATCGA
388 TTCTTGTTGATTCTTGATATGGAAGTAAAGAAATAAAAGATTAGAAACAAACAAACAAGAATCGA
* * *
51232359 ACTACAAATTCAAGGAAAGAGAGAAGAAAGTTAGGAAAAGACTAAAGTGGCGTGAAGATGTCCTA
453 ACTACAAATTCAAGGAAAGAGAGAAGAAAGTTGGGAAATGACTAAAGTGGTGTGAAGATGTCCTA
* * *
51232424 AGGAGCATTAGATTGTTGCGTTCTCAAGATTAAGGAATCATGGAGTTGAACCCCACCTAGAACTC
518 AGGAGCATTAGATTGTTGCGTTCTCAAGATTAAGGAATCATGGAGTTCAACCCCACCCAAAACTC
*
51232489 AAACAATCCAAGTTAGAATTAAAAGGGCAACAACACAAATAAACTTATAAAAGAACTAGGAAATT
583 AAACAATCCAAGTTAGAATTAAAAGGGCAACAACACAAATAAACTTATAAAAGAACAAGGAAATT
* * *
51232554 GAATCCAAATTAGGGTTCTTGGAGGAGACCAAGTAGGTTAAAGAA-GCATAATTCTGTATAAAAT
648 GAATCCAAATTAGGGTTCTTGGAGGAGACCAAGTAGGTTAAGGAATGCAT-ATTTTGTACAAAAT
*
51232618 CCAAAGGGGTTAGGGCCGCAAATTAAGTGAAAACAAATGGTTAGACAGATTTGAAGCATAAAAGA
712 CCAAAGGGGTTAGGGCTGCAAATTAAGTGAAAACAAAT-GTTAGACAGATTTGAAGCA-AAAAGA
* * *
51232683 TCAAAATTGAATGAAATCAGAAGAAAGATGAAAGGAAGGCCTGACGAGTAAAGAAC
775 TCAAAATTGAATGAAATCACAAGAAAGATTAATGGAAGGCCTGACGAGTAAAGAAC
* * *
51232739 ATGAAGAATCAAGTATATTAAGATTATTTAAAGCATTCTTGGATGAAAATATGATGTCGAATCAA
1 ATGAAGAATCAAGTATATTAAGATGATTTGAAGCATTCTTGGATGAAAAGATGATGTCGAATCAA
* * *
51232804 GATCTAAACAAAAGAAATAAAACAAATTAGATTTCTGGTT-AAAAGAATGAAAAAGTACACCAAC
66 GATCTAAACAAAAGAAATAAAACAAATTAGATTTCT-GTTAAAAAAAATGAAAAAGTAAACCAAA
* *
51232868 CAACATGGAAGGAGAGAGGTGGGCAAAGAGAAGTACAAGAACTACTGGGATATGGTTTCTTGGAT
130 CAACATGGAAGGAGAGAGGTAGGCAAAGAGAAGTACAAGAACGACTGGGATATGGTTTCTTGGAT
*
51232933 GAGAAAGAAACATTCTTGAACCAAAAGAAGGCCTAAAACTAGATCTAAAATTGACAGAAGAAAAC
195 GAGAAAGAAACATTCTTGAACCAAAAGAAGGCCTAAAACTAGATCTAAAATTGAAAGAAGAAAAC
* *
51232998 AAATTGTTAGAATGGATTTTTAAGCCATAACAAAATTGTTTTATGATAAAAGCAATCGTCACAAT
260 AGATTGTTAGAATGGATTTTTAAGCCATAA-AAAATTGTTTTGTGATAAAAGCAATCGTCACAAT
* **
51233063 AAGAAAAGAAGAGACTTCCTAGTTTTCAATGGTTCTTGGTGAATTAAGAAGGGGAGAACATCTTT
324 AAGAAAAGAAGAGACTTCCTAGTTTTCAATGGTTCTTGGTGTATTAAGAAGGGGAGAATGTCTTT
** * * *
51233128 TCTTGTTGATTCTTGATACAGAAGTAAAGAAATAAAAGATTAGAAACAAATAGACAAGAATCAAA
389 TCTTGTTGATTCTTGATATGGAAGTAAAGAAATAAAAGATTAGAAACAAACAAACAAGAATCGAA
* * *
51233193 CTACAAATTTAAGGATAGAGAAAAGAAAGTTGGGAAATGACTAAAGTGGTGTGAAGATGTCTCCT
454 CTACAAATTCAAGGAAAGAGAGAAGAAAGTTGGGAAATGACTAAAGTGGTGTGAAGATG--TCCT
* * *
51233258 AAGGAGCACTAGATTGTTGCATTCTCAAGATTAAGGAATCATGGAGTTCATCCCCACCCAAAACA
517 AAGGAGCATTAGATTGTTGCGTTCTCAAGATTAAGGAATCATGGAGTTCAACCCCACCCAAAAC-
* *
51233323 T-AAACAATCTAAGTTAGAATTAAAAGGGCATCAACACAAATAAACTTATAAAAGAACAAGGAAA
581 TCAAACAATCCAAGTTAGAATTAAAAGGGCAACAACACAAATAAACTTATAAAAGAACAAGGAAA
* *
51233387 TTGAATCCAAATTAGGGTTCTTGGATGAGACCAGGTAGGTTAAGGAAGTGC-TATTTTGTACAAA
646 TTGAATCCAAATTAGGGTTCTTGGAGGAGACCAAGTAGGTTAAGGAA-TGCATATTTTGTACAAA
* * *
51233451 ATCCAAAAGGGTTAGGGCTACAAATTAAGTGAAAACAAACTGTTCGACAGATTTGAAGCAAAAAG
710 ATCCAAAGGGGTTAGGGCTGCAAATTAAGTGAAAACAAA-TGTTAGACAGATTTGAAGCAAAAAG
* * * * * * *
51233516 ATCAAAATAGAATAAAATTATAAGAATGATTAATGGAAGGCTTGACCAGTAAAGAAC
774 ATCAAAATTGAATGAAATCACAAGAAAGATTAATGGAAGGCCTGACGAGTAAAGAAC
** * *
51233573 ATGAAGAATCAAGTATATTAAGATGACATGAAGCATTCTTGGATTAAAAGATGATGTCGAATCGA
1 ATGAAGAATCAAGTATATTAAGATGATTTGAAGCATTCTTGGATGAAAAGATGATGTCGAATCAA
*
51233638 GATCTAAACAAAAGAAATAAAACAAATTAGATTTCTGATTAAAAAAAATGAGAAAGTAAACCAAA
66 GATCTAAACAAAAGAAATAAAACAAATTAGATTTCTG-TTAAAAAAAATGAAAAAGTAAACCAAA
* * * * * * *
51233703 CAACATAGAAGGAGAGAGGTTA-GAAAAAAGGAGTGCAAGAACGATTGAGATATGGTTTCTTGGA
130 CAACATGGAAGGAGAGAGG-TAGGCAAAGAGAAGTACAAGAACGACTGGGATATGGTTTCTTGGA
* ** * * * * **
51233767 TGAGAAAGAAAAATTCTTGAACTGAAAGAAGGCTTTAATCTAGATCTGAAATCAAAAGAAGAAAA
194 TGAGAAAGAAACATTCTTGAACCAAAAGAAGGCCTAAAACTAGATCTAAAATTGAAAGAAGAAAA
* *
51233832 CAGATTGTTAGAATGGATTTTTAAGCCATAATAAAATTGTTTTGTGATAAAAGCAATGGAT-GCA
259 CAGATTGTTAGAATGGATTTTTAAGCCATAA-AAAATTGTTTTGTGATAAAAGCAATCG-TCACA
* * * *
51233896 ATAAGAAAAGAATAAACTTCCTAGTTTTTGAATGGTTCGTGGTGTATTAAGAAGGGGAGAATGTC
322 ATAAGAAAAGAAGAGACTTCCTAG-TTTTCAATGGTTCTTGGTGTATTAAGAAGGGGAGAATGTC
* **
51233961 TTTTCTTGTTGATTCTTGATATGGAAGTAATGAAACGAAAGATTAGAAACAAACAAACAAGAATC
386 TTTTCTTGTTGATTCTTGATATGGAAGTAAAGAAATAAAAGATTAGAAACAAACAAACAAGAATC
* * * *
51234026 GAACTACAAATTCAAAGAAAGAGAGGAGAAATTTGGGAAATGACTAAAGTGGTGTGGAGATGTCC
451 GAACTACAAATTCAAGGAAAGAGAGAAGAAAGTTGGGAAATGACTAAAGTGGTGTGAAGATGTCC
**
51234091 TAAGGAGCATTAGATTGTTGCGTTCTCAAGATTAAGGAATCATGGAGTTCAACCCCATGCAAAAC
516 TAAGGAGCATTAGATTGTTGCGTTCTCAAGATTAAGGAATCATGGAGTTCAACCCCACCCAAAAC
* * * * *
51234156 TCAAACAATCCAAGTTAGAATTAAAAGGGAAACAATACAAAAAAAATTATAAAAGAACAAAGAAA
581 TCAAACAATCCAAGTTAGAATTAAAAGGGCAACAACACAAATAAACTTATAAAAGAACAAGGAAA
* *
51234221 TTAAATCCAAATTAGGGTTCTTGGAGGAGACCAAGTATGTTAAGGAAT-CATTATTTTGTACAAA
646 TTGAATCCAAATTAGGGTTCTTGGAGGAGACCAAGTAGGTTAAGGAATGCA-TATTTTGTACAAA
* * * * * *
51234285 ATCCAAAGGGGTCAGGACTGCAAATTAAGTGAAAA-AATTGTTGGACAAATTTGAAGCATAAAGA
710 ATCCAAAGGGGTTAGGGCTGCAAATTAAGTGAAAACAAATGTTAGACAGATTTGAAGCAAAAAGA
* * *
51234349 TGAAAATTGAATGAAATCACAAGAAAGATTAATGGAAGCCCTGATGAGTAAAGAAC
775 TCAAAATTGAATGAAATCACAAGAAAGATTAATGGAAGGCCTGACGAGTAAAGAAC
51234405 AT
1 AT
51234407 CAAGTGTAAC
Statistics
Matches: 1466, Mismatches: 184, Indels: 37
0.87 0.11 0.02
Matches are distributed among these distances:
832 81 0.06
833 430 0.29
834 364 0.25
835 437 0.30
836 152 0.10
837 2 0.00
ACGTcount: A:0.44, C:0.11, G:0.21, T:0.24
Consensus pattern (830 bp):
ATGAAGAATCAAGTATATTAAGATGATTTGAAGCATTCTTGGATGAAAAGATGATGTCGAATCAA
GATCTAAACAAAAGAAATAAAACAAATTAGATTTCTGTTAAAAAAAATGAAAAAGTAAACCAAAC
AACATGGAAGGAGAGAGGTAGGCAAAGAGAAGTACAAGAACGACTGGGATATGGTTTCTTGGATG
AGAAAGAAACATTCTTGAACCAAAAGAAGGCCTAAAACTAGATCTAAAATTGAAAGAAGAAAACA
GATTGTTAGAATGGATTTTTAAGCCATAAAAAATTGTTTTGTGATAAAAGCAATCGTCACAATAA
GAAAAGAAGAGACTTCCTAGTTTTCAATGGTTCTTGGTGTATTAAGAAGGGGAGAATGTCTTTTC
TTGTTGATTCTTGATATGGAAGTAAAGAAATAAAAGATTAGAAACAAACAAACAAGAATCGAACT
ACAAATTCAAGGAAAGAGAGAAGAAAGTTGGGAAATGACTAAAGTGGTGTGAAGATGTCCTAAGG
AGCATTAGATTGTTGCGTTCTCAAGATTAAGGAATCATGGAGTTCAACCCCACCCAAAACTCAAA
CAATCCAAGTTAGAATTAAAAGGGCAACAACACAAATAAACTTATAAAAGAACAAGGAAATTGAA
TCCAAATTAGGGTTCTTGGAGGAGACCAAGTAGGTTAAGGAATGCATATTTTGTACAAAATCCAA
AGGGGTTAGGGCTGCAAATTAAGTGAAAACAAATGTTAGACAGATTTGAAGCAAAAAGATCAAAA
TTGAATGAAATCACAAGAAAGATTAATGGAAGGCCTGACGAGTAAAGAAC
Found at i:51234675 original size:23 final size:23
Alignment explanation
Indices: 51234645--51234704 Score: 120
Period size: 23 Copynumber: 2.6 Consensus size: 23
51234635 CTTAAGGCTC
51234645 CACATGCCCGTGTGGGTATAGGG
1 CACATGCCCGTGTGGGTATAGGG
51234668 CACATGCCCGTGTGGGTATAGGG
1 CACATGCCCGTGTGGGTATAGGG
51234691 CACATGCCCGTGTG
1 CACATGCCCGTGTG
51234705 CTTGGGACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.17, C:0.25, G:0.37, T:0.22
Consensus pattern (23 bp):
CACATGCCCGTGTGGGTATAGGG
Found at i:51235961 original size:47 final size:46
Alignment explanation
Indices: 51235759--51236073 Score: 221
Period size: 47 Copynumber: 6.7 Consensus size: 46
51235749 GGGATAAGTT
* *
51235759 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCATCGAG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTAGC-ATCATCATCGAG
* * * * *
51235808 GCCGATGCCATGTCCTAGACATGGTCTTACACTATCTCTCATATATACG-T
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTAGC-ATCAT-CAT-CGAG
* * * *
51235858 TCTGATGCATGTCCCGGACATGTCTTACACTAGCA-CAACTC-TC-A-
1 GCCGATGCATGTCCCAGACAGGTCTTACACTAGCATC-A-TCATCGAG
* *
51235902 GCCGATGCATGTCCCAGACACGTCTTACACTAGCTATCATCGTCGAG
1 GCCGATGCATGTCCCAGACAGGTCTTACACTAGC-ATCATCATCGAG
* * * * *
51235949 GCCGATGCATGTCCCAGACATGTCTTACGCTGGCACTCATC-TCTAC
1 GCCGATGCATGTCCCAGACAGGTCTTACACTAGCA-TCATCATCGAG
* * * **
51235995 GCCGATGCCATGTCCCAGAGATGGTCTTACACTGGCACTCATAAT-TTG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTAGCA-TCATCATCGAG
* *
51236043 TCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACAGGTCTTACACT
51236074 GGCACATAAG
Statistics
Matches: 221, Mismatches: 31, Indels: 31
0.78 0.11 0.11
Matches are distributed among these distances:
44 32 0.14
45 5 0.02
46 25 0.11
47 61 0.28
48 38 0.17
49 51 0.23
50 7 0.03
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACAGGTCTTACACTAGCATCATCATCGAG
Found at i:51236048 original size:141 final size:139
Alignment explanation
Indices: 51235752--51236073 Score: 355
Period size: 141 Copynumber: 2.3 Consensus size: 139
51235742 CAAACATGGG
* * * *
51235752 ATAAGTTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGCC
1 ATAATTTGCCGATG-CATGTCCCAGACA-CGTCTTACACTAGCTATCATCATCGAGGCCGATGCC
* * * * *
51235817 ATGTCCTAGACATGGTCTTACACTATCTCTCATATATACGTTCTGATGCATGTCCCGGACATGTC
64 ATGTCCCAGACATGGTCTTACACTAGCACTCATATATACG-TCCGATGCATGTCCCAGACATGTC
51235882 TTACACTAGCAC
128 TTACACTAGCAC
* * *
51235894 A-ACTCTCAGCCGATGCATGTCCCAGACACGTCTTACACTAGCTATCATCGTCGAGGCCGATG-C
1 ATAAT-T-TGCCGATGCATGTCCCAGACACGTCTTACACTAGCTATCATCATCGAGGCCGATGCC
* * * * *
51235957 ATGTCCCAGACAT-GTCTTACGCTGGCACTCATCTCTACG-CCGATGCCATGTCCCAGAGATGGT
64 ATGTCCCAGACATGGTCTTACACTAGCACTCATATATACGTCCGATG-CATGTCCCAGACAT-GT
*
51236020 CTTACACTGGCACTC
127 CTTACACTAGCA--C
*
51236035 ATAATTTGTCCGATGCATGTCCCAGACATGTCTTACACT
1 ATAATTTG-CCGATGCATGTCCCAGACACGTCTTACACT
51236074 GGCACATAAG
Statistics
Matches: 151, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
137 5 0.03
138 12 0.08
139 33 0.22
140 14 0.09
141 64 0.42
142 16 0.11
143 7 0.05
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (139 bp):
ATAATTTGCCGATGCATGTCCCAGACACGTCTTACACTAGCTATCATCATCGAGGCCGATGCCAT
GTCCCAGACATGGTCTTACACTAGCACTCATATATACGTCCGATGCATGTCCCAGACATGTCTTA
CACTAGCAC
Found at i:51236078 original size:94 final size:93
Alignment explanation
Indices: 51235752--51236077 Score: 322
Period size: 94 Copynumber: 3.5 Consensus size: 93
51235742 CAAACATGGG
* * * *
51235752 ATAAGTTG-CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGC
1 ATAATTTGTCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATC-TCTACGCCGATGC
* * *
51235816 CATGTCCTAGACATGGTCTTACACTATCTCTC
62 CATGTCCCAGACATGGTCTTACACTAGCACTC
** * * * *
51235848 ATATATACGTTCTGATGCATGTCCCGGACATGTCTTACACTAGCA-CAACTCT-CAGCCGATG-C
1 ATA-ATTTG-TCCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTAC-GCCGATGCC
*
51235910 ATGTCCCAGACA-CGTCTTACACTAGCTA-TC
63 ATGTCCCAGACATGGTCTTACACTAGC-ACTC
** ** * *
51235940 ATCGTCGAGGCCGATGCATGTCCCAGACATGTCTTACGCTGGCACTCATCTCTACGCCGATGCCA
1 ATAAT-TTGTCCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTACGCCGATGCCA
* *
51236005 TGTCCCAGAGATGGTCTTACACTGGCACTC
64 TGTCCCAGACATGGTCTTACACTAGCACTC
51236035 ATAATTTGTCCGATGCATGTCCCAGACATGTCTTACACTGGCA
1 ATAATTTGTCCGATGCATGTCCCAGACATGTCTTACACTGGCA
51236078 CATAAGTAAT
Statistics
Matches: 185, Mismatches: 33, Indels: 26
0.76 0.14 0.11
Matches are distributed among these distances:
91 31 0.17
92 17 0.09
93 25 0.14
94 57 0.31
95 20 0.11
96 4 0.02
97 14 0.08
98 12 0.06
99 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
ATAATTTGTCCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTACGCCGATGCCATG
TCCCAGACATGGTCTTACACTAGCACTC
Found at i:51236813 original size:12 final size:12
Alignment explanation
Indices: 51236796--51236820 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51236786 CAACAATGTA
51236796 AAAATCATCAAG
1 AAAATCATCAAG
51236808 AAAATCATCAAG
1 AAAATCATCAAG
51236820 A
1 A
51236821 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:51238736 original size:27 final size:27
Alignment explanation
Indices: 51238706--51238803 Score: 160
Period size: 27 Copynumber: 3.6 Consensus size: 27
51238696 AAAGTACTCC
**
51238706 TGATTTACAGAATTACCATTTTACCCT
1 TGATTTACAGAATTACTGTTTTACCCT
*
51238733 TGATTTATAGAATTACTGTTTTACCCT
1 TGATTTACAGAATTACTGTTTTACCCT
51238760 TGATTTACAGAATTACTGTTTTACCCT
1 TGATTTACAGAATTACTGTTTTACCCT
*
51238787 TGATTTACAAAATTACT
1 TGATTTACAGAATTACT
51238804 AAAATACCCT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.44
Consensus pattern (27 bp):
TGATTTACAGAATTACTGTTTTACCCT
Found at i:51238747 original size:54 final size:54
Alignment explanation
Indices: 51238687--51238815 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
51238677 CTCGACTTGT
*
51238687 AAAATTACCAAAGTACTCC-TGATTTACAGAATTACCATTTTACCCTTGATTTAT
1 AAAATTACCAAAGTAC-CCTTGATTTACAGAATTACCATTTTACCCTTGATTTAC
* ***** **
51238741 AGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTTGATTTAC
1 AAAATTACCAAAGTACCCTTGATTTACAGAATTACCATTTTACCCTTGATTTAC
* *
51238795 AAAATTACTAAAATACCCTTG
1 AAAATTACCAAAGTACCCTTG
51238816 GTTTGTGAAA
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
53 2 0.03
54 58 0.97
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTTGATTTACAGAATTACCATTTTACCCTTGATTTAC
Found at i:51240144 original size:9 final size:9
Alignment explanation
Indices: 51240132--51240208 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
51240122 TTTGATAAAC
51240132 ATGATATGT
1 ATGATATGT
*
51240141 ATGATATGCAC
1 ATGATATG--T
51240152 ATGATATGT
1 ATGATATGT
*
51240161 ATGATATGCAC
1 ATGATATG--T
*
51240172 ATGACATGT
1 ATGATATGT
*
51240181 ATGATATGCAC
1 ATGATATG--T
51240192 ATGATATGT
1 ATGATATGT
51240201 ATGATATG
1 ATGATATG
51240209 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:51240157 original size:11 final size:11
Alignment explanation
Indices: 51240141--51240212 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
51240131 CATGATATGT
51240141 ATGATATGCAC
1 ATGATATGCAC
*
51240152 ATGATATG--T
1 ATGATATGCAC
51240161 ATGATATGCAC
1 ATGATATGCAC
* *
51240172 ATGACATG--T
1 ATGATATGCAC
51240181 ATGATATGCAC
1 ATGATATGCAC
*
51240192 ATGATATG--T
1 ATGATATGCAC
51240201 ATGATATGCAC
1 ATGATATGCAC
51240212 A
1 A
51240213 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51240220 original size:20 final size:20
Alignment explanation
Indices: 51240130--51240212 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
51240120 ATTTTGATAA
51240130 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51240150 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51240170 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
51240190 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51240210 ACA
1 ACA
51240213 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51240323 original size:24 final size:23
Alignment explanation
Indices: 51240267--51240433 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
51240257 GAGGAAGTGA
51240267 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
51240290 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
51240313 CAAAAGGGCTTATGCCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
51240337 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
51240361 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
51240384 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
51240409 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
51240433 A
1 A
51240434 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 44 0.34
24 75 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:51240336 original size:47 final size:47
Alignment explanation
Indices: 51240267--51240433 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 47
51240257 GAGGAAGTGA
*
51240267 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
51240313 CAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
51240361 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
51240409 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
51240434 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 64 0.59
48 32 0.30
49 12 0.11
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Done.