Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 182 of 345
Found at i:51633757 original size:53 final size:53
Alignment explanation
Indices: 51633615--51633818 Score: 188
Period size: 53 Copynumber: 3.9 Consensus size: 53
51633605 AGGCATGACA
* * * *
51633615 ATTGGTAAGGTTTC-TAATGCAAGGATACCATGTAAGACGATGTCAAGAAATGGC
1 ATTGGTAA-G-TTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATAGC
* * * *
51633669 ATTGATAAGTTACTATAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATAGC
1 ATTGGTAAGTT-C-ATAAGGC-AAGGATACCATGTAAGACCATGTCAAGACATAGC
* **
51633724 ATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATGTTGAGACATAGC
1 ATTGGTAAGTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATAGC
* *
51633777 AATGGTAAGTTTCA-AA-G---GGATACCATGTAAGACCATGACAAG
1 ATTGGTAAG-TTCATAAGGCAAGGATACCATGTAAGACCATGTCAAG
51633819 TCATGGCAAT
Statistics
Matches: 124, Mismatches: 20, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
49 22 0.18
52 7 0.06
53 42 0.34
54 12 0.10
55 37 0.30
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.24
Consensus pattern (53 bp):
ATTGGTAAGTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATAGC
Found at i:51633928 original size:23 final size:24
Alignment explanation
Indices: 51633902--51633950 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
51633892 CAAGGTAAGG
*
51633902 AAAGGTAAGACGAGTT-ATACTAA
1 AAAGGTAAGACAAGTTCATACTAA
*
51633925 AAAGGTAAGACAAGTTCATGCTAA
1 AAAGGTAAGACAAGTTCATACTAA
51633949 AA
1 AA
51633951 GAGCAAAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.49, C:0.10, G:0.20, T:0.20
Consensus pattern (24 bp):
AAAGGTAAGACAAGTTCATACTAA
Found at i:51644200 original size:22 final size:24
Alignment explanation
Indices: 51644175--51644229 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 24
51644165 ATAGTGAGTC
51644175 CGCAC-GTGCTATATAATC-AACT
1 CGCACTGTGCTATATAATCAAACT
51644197 CGCACACTTAGTGCTATATAATCAAACT
1 CG--CAC-T-GTGCTATATAATCAAACT
51644225 CGCAC
1 CGCAC
51644230 ACTTAGTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
22 2 0.07
24 3 0.11
26 3 0.11
27 13 0.48
28 6 0.22
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (24 bp):
CGCACTGTGCTATATAATCAAACT
Found at i:51644218 original size:27 final size:28
Alignment explanation
Indices: 51644180--51644239 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
51644170 GAGTCCGCAC
51644180 GTGCTATATAATC-AACTCGCACACTTA
1 GTGCTATATAATCAAACTCGCACACTTA
51644207 GTGCTATATAATCAAACTCGCACACTTA
1 GTGCTATATAATCAAACTCGCACACTTA
51644235 GTGCT
1 GTGCT
51644240 GTACAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 13 0.41
28 19 0.59
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (28 bp):
GTGCTATATAATCAAACTCGCACACTTA
Found at i:51652306 original size:28 final size:27
Alignment explanation
Indices: 51652243--51652312 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
51652233 ATAGTGAGTC
51652243 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
51652270 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51652298 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51652313 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51654038 original size:53 final size:55
Alignment explanation
Indices: 51653942--51654070 Score: 172
Period size: 53 Copynumber: 2.4 Consensus size: 55
51653932 GGCTGTCACA
* *
51653942 AAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCC
1 AAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTACCATGTAAGACCATGCC
* * * * *
51653997 AAGGCATGGCATTGGTGAGTT-C-ATAAGGCAAGGGTATCATGTAAGACCATGTC
1 AAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTACCATGTAAGACCATGCC
*
51654050 AAGACATGGCAATGGTAAGTT
1 AAGACATGGCATTGGTAAGTT
51654071 TCAAAAGGAT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 45 0.70
54 1 0.02
55 18 0.28
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.23
Consensus pattern (55 bp):
AAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTACCATGTAAGACCATGCC
Found at i:51658399 original size:40 final size:40
Alignment explanation
Indices: 51658305--51658550 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
51658295 TGAATGATAC
* * *
51658305 CCGGGCTAAG-TCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
51658344 -CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
51658383 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51658423 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
51658463 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
51658503 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51658543 CC-GGCTAA
1 CCGGGCTAA
51658551 ATTCCGAAGA
Statistics
Matches: 189, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 9 0.05
39 28 0.15
40 152 0.80
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:51673975 original size:40 final size:40
Alignment explanation
Indices: 51673930--51674114 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
51673920 TACACATTCA
* *
51673930 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACG
* * *
51673970 AATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
* *
51674010 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * ** * *
51674050 TATGCCGTC-GGATCTTATTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACG
*
51674090 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
51674115 ATCATTCGAA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 107 0.89
41 10 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Found at i:51674094 original size:80 final size:80
Alignment explanation
Indices: 51673933--51674114 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
51673923 ACATTCAAAT
* * *
51673933 GCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTT
* *
51673997 AGTAGCTCGCTCGAAA
65 AGTAGCTAGCACGAAA
* * **
51674013 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTATTCCGGATT
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTTAACCCGGATT
51674076 TAGTCA-CTTAGCAC-AAA
64 TAGT-AGC-TAGCACGAAA
51674093 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
51674115 ATCATTCGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
79 6 0.07
80 70 0.81
81 10 0.12
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTTA
GTAGCTAGCACGAAA
Found at i:51681963 original size:40 final size:39
Alignment explanation
Indices: 51681887--51682070 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
51681877 TACACATTCA
* *
51681887 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAC
* * *
51681926 GAATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
51681966 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCAC
* * ** * *
51682005 GTATGCCGTC-GGATCTTATTCCGGATTTAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
51682046 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
51682071 ATCATTCGAA
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 3 0.03
39 30 0.25
40 75 0.64
41 10 0.08
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:51681997 original size:79 final size:80
Alignment explanation
Indices: 51681885--51682070 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 80
51681875 GCTACACATT
* * *
51681885 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTC-GGATCTTAACCC
* *
51681948 GGATTTAGT-AGC-TCGCT
63 GGATTTAGTCA-CTTAGCA
* * **
51681965 CAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTATTCCGG
1 CAAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGATCTTAACCCGG
51682029 ATTTAGTCACTTAGCA
65 ATTTAGTCACTTAGCA
51682045 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
51682071 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 6 0.07
79 50 0.56
80 31 0.34
81 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGATCTTAACCCGGA
TTTAGTCACTTAGCA
Found at i:51688951 original size:46 final size:46
Alignment explanation
Indices: 51688901--51689017 Score: 146
Period size: 46 Copynumber: 2.5 Consensus size: 46
51688891 TGTAGTCGAC
* * *
51688901 GCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCCAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAAGGCCGAT
**
51688947 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATTCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGAT
*
51688993 GCCATGTCCTAGACATGGTCTTACA
1 G-CATGTCCCAGACAT-GTCTTACA
51689018 TTGGTTCTCG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
46 40 0.65
47 14 0.23
48 8 0.13
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGAT
Found at i:51703195 original size:93 final size:93
Alignment explanation
Indices: 51703083--51703254 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
51703073 GCCCATAAGT
* *
51703083 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51703148 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
51703176 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
51703241 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
51703255 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:51703250 original size:46 final size:46
Alignment explanation
Indices: 51703075--51703250 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
51703065 TGTAACCCGC
* *
51703075 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51703121 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
51703167 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51703214 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
51703251 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51709737 original size:25 final size:25
Alignment explanation
Indices: 51709676--51709740 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
51709666 CCAAAATGAG
* * *
51709676 AATCAGAATCAAAATCAGGTGATAG
1 AATCAGAATCAGAATCAGGTGACAA
*
51709701 AATCAGAATCAGAATTAGGTGACAA
1 AATCAGAATCAGAATCAGGTGACAA
*
51709726 AATTAGAATCAGAAT
1 AATCAGAATCAGAAT
51709741 AAGTATCAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTGACAA
Found at i:51709970 original size:2 final size:2
Alignment explanation
Indices: 51709965--51709994 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
51709955 TATATATATA
*
51709965 TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
51709995 GAGAAGCCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.03, C:0.00, G:0.47, T:0.50
Consensus pattern (2 bp):
TG
Found at i:51710274 original size:27 final size:27
Alignment explanation
Indices: 51710244--51710777 Score: 467
Period size: 27 Copynumber: 19.2 Consensus size: 27
51710234 AACACCCTAG
* *
51710244 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
51710271 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
51710298 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
51710325 GGGT-AAACTGGTAATTCTGTAAATCGA
1 GGGTAAAAC-GGTAATTTTGTAAATCGA
*
51710352 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
51710379 GGGTAAAATGGTAATTTTGTAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** * * *
51710406 GGGTAAAATAGTAATTCTGTAAAACAATAA
1 GGGTAAAACGGTAATTTTGTAAATC---GA
*** *
51710436 TTCTATAAATAGAGGGTAAAACAGTAATTCTGTAAATCGA
1 --GGGT-AA-A-ACGGT-A---A-T--TT-TGTAAATCGA
* * * * *
51710476 GGGTAAAATGGTAAATCTGGAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGA
**
51710503 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
51710530 GGGTAAAACGATAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*** *
51710557 GGGTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
51710584 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * * *
51710611 GAGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
51710638 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** * *
51710665 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
51710692 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** *
51710719 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
51710746 TGGTAAAACGGTAATTTTGTAAACCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
51710773 GGGTA
1 GGGTA
51710778 CTTTGGTAAT
Statistics
Matches: 418, Mismatches: 71, Indels: 36
0.80 0.14 0.07
Matches are distributed among these distances:
26 4 0.01
27 379 0.91
28 5 0.01
30 1 0.00
31 1 0.00
32 1 0.00
33 2 0.00
34 2 0.00
35 7 0.02
36 2 0.00
37 2 0.00
38 1 0.00
39 1 0.00
40 2 0.00
42 1 0.00
43 7 0.02
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTGTAAATCGA
Found at i:51710312 original size:54 final size:54
Alignment explanation
Indices: 51710244--51710777 Score: 642
Period size: 54 Copynumber: 10.1 Consensus size: 54
51710234 AACACCCTAG
** * * *
51710244 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
*
51710298 GGGTAAAACAGTAATTTTGTAAATCGAGGGT-AAACTGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC-GGTAATTCTGTAAATCGA
* * * *
51710352 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * *
51710406 GGGTAAAATAGTAATTCTGT-AA---A----ACAA---TAATTCTATAAATAGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * *
51710449 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAAATCTGGAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * * *
51710503 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* *
51710557 GGGTAAAATAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * *
51710611 GAGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * *
51710665 GGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * * *
51710719 GGGTAAAATAGTAATTCTGTAAATCGATGGTAAAACGGTAATTTTGTAAACCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
51710773 GGGTA
1 GGGTA
51710778 CTTTGGTAAT
Statistics
Matches: 413, Mismatches: 54, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
43 32 0.08
44 2 0.00
46 3 0.01
47 1 0.00
50 1 0.00
51 3 0.01
53 6 0.01
54 362 0.88
55 3 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
Found at i:51710349 original size:81 final size:81
Alignment explanation
Indices: 51710244--51710777 Score: 633
Period size: 81 Copynumber: 6.7 Consensus size: 81
51710234 AACACCCTAG
* * * *
51710244 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
* *
51710309 TAATTTTGTAAATCGA
66 TAATTCTATAAATCGA
* * **
51710325 GGGTAAACTGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
* * *
51710390 TAATTTTGTAAATTGA
66 TAATTCTATAAATCGA
* * * *
51710406 GGGTAAAATAGTAATTC------T-----GTAAAACAATAATTCTATAAATAGAGGGTAAAACAG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
*
51710460 TAATTCTGTAAATCGA
66 TAATTCTATAAATCGA
* * * * *
51710476 GGGTAAAATGGTAAATCTGGAAATCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAAC-G
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
*
51710540 ATAATTTTATAAATCGA
66 -TAATTCTATAAATCGA
** * *
51710557 GGGTAAAATAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAGTAAAACAG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
51710622 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * * *
51710638 GGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
51710703 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * * *
51710719 GGGTAAAATAGTAATTCTGTAAATCGATGGTAAAACGGTAATTTTGTAAACCGAGGGTA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
51710778 CTTTGGTAAT
Statistics
Matches: 385, Mismatches: 55, Indels: 26
0.83 0.12 0.06
Matches are distributed among these distances:
70 59 0.15
75 1 0.00
76 1 0.00
80 1 0.00
81 322 0.84
82 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (81 bp):
GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
TAATTCTATAAATCGA
Found at i:51712398 original size:16 final size:16
Alignment explanation
Indices: 51712377--51712413 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
51712367 GCCAAAATGC
51712377 CGAAATGCCGAAAAAT
1 CGAAATGCCGAAAAAT
* *
51712393 CGAAATGTCGAAAAGT
1 CGAAATGCCGAAAAAT
51712409 CGAAA
1 CGAAA
51712414 GTTAGGCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.16, G:0.22, T:0.14
Consensus pattern (16 bp):
CGAAATGCCGAAAAAT
Found at i:51712664 original size:28 final size:29
Alignment explanation
Indices: 51712624--51712737 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
51712614 GTAAGCATGA
* *
51712624 ATATGAATGTGA-TTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
51712652 ATATAAATGTGATTTGGGCTTAATGGACC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
51712681 ATATACA-GATGATTTGGGCCTAATGGGCC
1 ATATAAATG-TGATTTGGGCCTAATGGGCC
* * *
51712710 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
51712738 GGATACAGGT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 27 0.38
29 45 0.62
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:51712744 original size:57 final size:58
Alignment explanation
Indices: 51712636--51712745 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 58
51712626 ATGAATGTGA
* *
51712636 TTGGGCCTAACGGGCCATATAAATGTGATTTGGGCTTAATGGACCATATACAGATGAT
1 TTGGGCCTAACGGGCCATATAAATATGATTTGGGCTTAATGGACCAGATACAGATGAT
* * * *
51712694 TTGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCGGATACAG
1 TTGGGCCTAACGGGCCATATAAATATGATTTGGGCTTAATGGACCAGATACAG
51712746 GTATGTGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.46
58 25 0.54
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (58 bp):
TTGGGCCTAACGGGCCATATAAATATGATTTGGGCTTAATGGACCAGATACAGATGAT
Found at i:51716543 original size:26 final size:26
Alignment explanation
Indices: 51716488--51716573 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
51716478 TTAGTTTACC
* * *
51716488 AAATTATTGAAATACCCTTGGTTTA-AA
1 AAATTATTG-AATACCC-TCGATTAGCA
51716515 AAATTATTGAATACCCTCGATTAGCA
1 AAATTATTGAATACCCTCGATTAGCA
***
51716541 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTA-TTGAATACCCTCGATTAGCA
51716568 AAATTA
1 AAATTA
51716574 CGAAAATATC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
25 5 0.10
26 14 0.27
27 32 0.63
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTATTGAATACCCTCGATTAGCA
Found at i:51716571 original size:27 final size:27
Alignment explanation
Indices: 51716524--51716779 Score: 254
Period size: 27 Copynumber: 9.5 Consensus size: 27
51716514 AAAATTATTG
* *
51716524 AATACCCTCGATTAGCAAAATTACCAA
1 AATACCCTCGATTTGTAAAATTACCAA
* * *
51716551 AATACCCTCGATTAGCAAAATTACGAA
1 AATACCCTCGATTTGTAAAATTACCAA
*
51716578 AATATCCCT-GGTTTGTAAAATTACCAA
1 AATA-CCCTCGATTTGTAAAATTACCAA
* *
51716605 AATACCCCTGGA-TTGTAAAATTACAAA
1 AATA-CCCTCGATTTGTAAAATTACCAA
* *
51716632 AATACCC-CTGGTTTGTAAAATTACAAA
1 AATACCCTC-GATTTGTAAAATTACCAA
*
51716659 AATACCC-CTGGTTTGTAAAATTACCAA
1 AATACCCTC-GATTTGTAAAATTACCAA
* *
51716686 AATACCC-CTAGTTTGTAAGATTACCAA
1 AATACCCTCGA-TTTGTAAAATTACCAA
* * *
51716713 AATACCCTTGATTTGTGAAATTACTAA
1 AATACCCTCGATTTGTAAAATTACCAA
* *
51716740 AATATCCTCGACTTGTAAAATTACCAA
1 AATACCCTCGATTTGTAAAATTACCAA
*
51716767 AGTACCC-CGATTT
1 AATACCCTCGATTT
51716780 ACAGAACTAC
Statistics
Matches: 196, Mismatches: 27, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
26 9 0.05
27 181 0.92
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
AATACCCTCGATTTGTAAAATTACCAA
Found at i:51716652 original size:81 final size:81
Alignment explanation
Indices: 51716540--51716774 Score: 303
Period size: 81 Copynumber: 2.9 Consensus size: 81
51716530 CTCGATTAGC
* * *
51716540 AAAATTACCAAAATA-CCCTCGATTAGCAAAATTACGAAAATATCCCTGGTTTGTAAAATTACCA
1 AAAATTACCAAAATACCCCT-GATTTGTAAAATTACAAAAATATCCCTGGTTTGTAAAATTACCA
*
51716604 AAATACCCCTGGATTGT
65 AAATACCCCTAGATTGT
* * *
51716621 AAAATTACAAAAATACCCCTGGTTTGTAAAATTACAAAAATACCCCTGGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACAAAAATATCCCTGGTTTGTAAAATTACCAA
*
51716686 AATACCCCTAGTTTGT
66 AATACCCCTAGATTGT
* * * * **
51716702 AAGATTACCAAAATACCCTTGATTTGTGAAATTACTAAAATAT-CCTCGACTTGTAAAATTACCA
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACAAAAATATCCCT-GGTTTGTAAAATTACCA
*
51716766 AAGTACCCC
65 AAATACCCC
51716775 GATTTACAGA
Statistics
Matches: 134, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
80 3 0.02
81 127 0.95
82 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACAAAAATATCCCTGGTTTGTAAAATTACCAA
AATACCCCTAGATTGT
Found at i:51716876 original size:54 final size:53
Alignment explanation
Indices: 51716809--51716921 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 53
51716799 CTCGATTTAC
* * *
51716809 AAAATTATTGAAATACCCCTTTAGGGTAGAATTACTGAAATACCCTTGTAGGGT
1 AAAA-TATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT
* *
51716863 AGAAATATCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGT
1 A-AAATATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT
51716917 AAAAT
1 AAAAT
51716922 TACCATTTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 4 0.08
54 46 0.87
55 3 0.06
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27
Consensus pattern (53 bp):
AAAATATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT
Found at i:51716905 original size:27 final size:27
Alignment explanation
Indices: 51716818--51716925 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
51716808 CAAAATTATT
* *
51716818 GAAATACCCCTTTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
51716845 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
51716872 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
51716899 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
51716926 ATTTTGCCTC
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:51717739 original size:26 final size:26
Alignment explanation
Indices: 51717662--51717742 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 26
51717652 TTTCTGTTAA
*
51717662 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTG-TTCTG
*
51717689 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTTTGCCAC-AATATCTGTTCTG
51717716 GTGGCTTTGCCACAATATCTGTTCTG
1 GTGGCTTTGCCACAATATCTGTTCTG
51717742 G
1 G
51717743 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
26 14 0.28
27 29 0.58
28 7 0.14
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTGTTCTG
Found at i:51717922 original size:6 final size:6
Alignment explanation
Indices: 51717911--51718059 Score: 117
Period size: 6 Copynumber: 24.3 Consensus size: 6
51717901 CTGTCACCTA
* * **
51717911 ATTCTG ATTCTG ATTCTT ATTCTA ATTCTG -TTACCTG ACACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
51717960 ATTCTG -TCAGCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
51718009 ATTCTG -TCACCTG ATTTTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
51718058 AT
1 AT
51718060 AATGCTTCTT
Statistics
Matches: 113, Mismatches: 19, Indels: 22
0.73 0.12 0.14
Matches are distributed among these distances:
5 5 0.04
6 97 0.86
7 9 0.08
8 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:51717924 original size:31 final size:31
Alignment explanation
Indices: 51717889--51717996 Score: 96
Period size: 31 Copynumber: 3.5 Consensus size: 31
51717879 TTACCCGATA
*
51717889 CTGATTATGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATT
* * * * **
51717920 CTGATTCTTATTC--TAATTCT-GTTACCTGACA
1 CTGATTCTGATTCTGTCA-CCTAATT--CTGATT
*
51717951 CTGATTCTGATTCTGTCAGCTAATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATT
51717982 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
51717997 ATTCTGATTC
Statistics
Matches: 58, Mismatches: 13, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
29 4 0.07
30 2 0.03
31 46 0.79
32 2 0.03
33 4 0.07
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (31 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:51717927 original size:25 final size:25
Alignment explanation
Indices: 51717861--51718038 Score: 102
Period size: 25 Copynumber: 7.7 Consensus size: 25
51717851 TTGCATTCAC
* * *
51717861 ATTCTGATTCTGATTCGGTTACCCG
1 ATTCTGATTCTGATTCTGTCACCTG
* * *
51717886 ATACTGATTATGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
51717911 ATTCTGATTCTGATTC--T----T-
1 ATTCTGATTCTGATTCTGTCACCTG
* *
51717929 ATTCTAATTCTG-TTACCTGACA-CTG
1 ATTCTGATTCTGATT--CTGTCACCTG
* *
51717954 ATTCTGA------TTCTGTCAGCTA
1 ATTCTGATTCTGATTCTGTCACCTG
*
51717973 ATTCTGATTCTGATTCTG--ATTCTG
1 ATTCTGATTCTGATTCTGTCA-CCTG
51717997 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
*
51718022 ATTTTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
51718039 CATTTTGATT
Statistics
Matches: 118, Mismatches: 17, Indels: 36
0.69 0.10 0.21
Matches are distributed among these distances:
17 2 0.02
18 16 0.14
19 11 0.09
20 2 0.02
23 2 0.02
24 21 0.18
25 63 0.53
26 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:51717962 original size:62 final size:62
Alignment explanation
Indices: 51717861--51718002 Score: 221
Period size: 62 Copynumber: 2.3 Consensus size: 62
51717851 TTGCATTCAC
* *
51717861 ATTCTGATTCTGATTCGGTTACCCGATACTGATTATGATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCCGACACTGATTATGATTCTGTCACCTAATTCTGATTCTG
* * * * *
51717923 ATTCTTATTCTAATTCTGTTACCTGACACTGATTCTGATTCTGTCAGCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCCGACACTGATTATGATTCTGTCACCTAATTCTGATTCTG
51717985 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
51718003 ATTCTGATTC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.44
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCCGACACTGATTATGATTCTGTCACCTAATTCTGATTCTG
Found at i:51718007 original size:49 final size:49
Alignment explanation
Indices: 51717951--51718059 Score: 157
Period size: 49 Copynumber: 2.2 Consensus size: 49
51717941 TTACCTGACA
* *
51717951 CTGATTCTGATTCTGTCAGCTAATTCTGATTCTGATTCTGATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTCATTCTGATT
* * *
51718000 CTGATTCTGATTCTGTCACCTGATTTTGATTCTGATTCTCATTTTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTCATTCTGATT
51718049 CT-AGTTCTGAT
1 CTGA-TTCTGAT
51718060 AATGCTTCTT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 1 0.02
49 53 0.98
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (49 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTCATTCTGATT
Found at i:51718048 original size:37 final size:37
Alignment explanation
Indices: 51717896--51718050 Score: 154
Period size: 37 Copynumber: 4.2 Consensus size: 37
51717886 ATACTGATTA
* *
51717896 TGATTCTGTCACCTAATTCTGATTCTGATTCTTATTC
1 TGATTCTGTCACCTGATTCTGATTCTGATTCTCATTC
* * ** *
51717933 TAATTCTGTTACCTGACACTGATTCTGATTCTGTCA-GC
1 TGATTCTGTCACCTGATTCTGATTCTGATTC--TCATTC
* * *
51717971 TAATTCTG--ATTCTGATTCTGATTCTGATTCTGATTC
1 TGATTCTGTCA-CCTGATTCTGATTCTGATTCTCATTC
* *
51718007 TGATTCTGTCACCTGATTTTGATTCTGATTCTCATTT
1 TGATTCTGTCACCTGATTCTGATTCTGATTCTCATTC
51718044 TGATTCT
1 TGATTCT
51718051 AGTTCTGATA
Statistics
Matches: 95, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
35 2 0.02
36 9 0.09
37 72 0.76
38 10 0.11
39 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.48
Consensus pattern (37 bp):
TGATTCTGTCACCTGATTCTGATTCTGATTCTCATTC
Found at i:51720876 original size:30 final size:30
Alignment explanation
Indices: 51720842--51720902 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51720832 TCCTTAACTC
*
51720842 AAACTTTTGAAAAATTATAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * *
51720872 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
51720902 A
1 A
51720903 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:51724575 original size:40 final size:39
Alignment explanation
Indices: 51724530--51724659 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
51724520 CGGAATATAA
51724530 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
51724570 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51724610 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
51724650 CCGGATATAA
1 CCGGATATAA
51724660 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51724674 original size:40 final size:40
Alignment explanation
Indices: 51724546--51724693 Score: 140
Period size: 40 Copynumber: 3.7 Consensus size: 40
51724536 ATAACCATGT
* * *
51724546 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
51724586 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
51724626 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
51724666 GCATAATTGTCTTCGGGAT-TTAGCCCGG
1 GCACAATTGCCTTCGGG-TCTTAGCCCGG
51724694 GTATCATTCA
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 82 0.94
41 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:51724680 original size:80 final size:80
Alignment explanation
Indices: 51724546--51724693 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
51724536 ATAACCATGT
*
51724546 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
51724610 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
51724626 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
51724689 CCCGG
64 CCCGG
51724694 GTATCATTCA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 55 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:51726839 original size:29 final size:29
Alignment explanation
Indices: 51726796--51726872 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
51726786 TGCATGTGAC
* *
51726796 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* **
51726825 TGGGCCTAATAGGCCATATTTAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
51726854 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
51726873 GAATATAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:51734353 original size:40 final size:40
Alignment explanation
Indices: 51734226--51734355 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
51734216 ATGCTGGAAA
* * *
51734226 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
51734266 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
51734306 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
51734346 TTATATCCGG
1 TTATATCCGG
51734356 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:51736357 original size:46 final size:47
Alignment explanation
Indices: 51736306--51736428 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 47
51736296 CGTAGCTGAT
*
51736306 GCATGTCCCAAACATGTCTTACACTGGCTTA-T-GTCTCGAGGCCGAA
1 GCATGTCCCAAACATGTCTTACACTGGC-TACTCGTCTCAAGGCCGAA
* * *
51736352 GCATGTCCCAAACATGTCTTACACTAGC-ACTCGTCTCAATGCCGAT
1 GCATGTCCCAAACATGTCTTACACTGGCTACTCGTCTCAAGGCCGAA
*
51736398 GCCATGTCCCAGACATGGTCTTACACTGGCT
1 G-CATGTCCCAAACAT-GTCTTACACTGGCT
51736429 CTCAAAATGT
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 1 0.02
45 1 0.02
46 39 0.59
47 13 0.20
48 12 0.18
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (47 bp):
GCATGTCCCAAACATGTCTTACACTGGCTACTCGTCTCAAGGCCGAA
Found at i:51736451 original size:47 final size:46
Alignment explanation
Indices: 51736400--51736521 Score: 165
Period size: 47 Copynumber: 2.7 Consensus size: 46
51736390 ATGCCGATGC
51736400 CATGTCCCAGACATGGTCTTACACTGGCTCTCAAAATGTGGCTAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCAAAATGT-GCTAATG
* * * *
51736447 CATGTCCTAAACATGGTCTTACATTGGCTCTCAAAATGTGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCAAAATGTGCTAATG
* **
51736493 TATGTCCCAGACAT-GTCACACACTGGCTC
1 CATGTCCCAGACATGGTCTTACACTGGCTC
51736522 ACACAAGTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 12 0.18
46 17 0.26
47 36 0.55
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCAAAATGTGCTAATG
Found at i:51743155 original size:16 final size:17
Alignment explanation
Indices: 51743128--51743160 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
51743118 ATGGCAAGTG
51743128 TGATGTTAATCGTGGTA
1 TGATGTTAATCGTGGTA
51743145 TGATG-TAATCGTGGTA
1 TGATGTTAATCGTGGTA
51743161 AGATAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.24, C:0.06, G:0.30, T:0.39
Consensus pattern (17 bp):
TGATGTTAATCGTGGTA
Found at i:51745550 original size:29 final size:29
Alignment explanation
Indices: 51745510--51745581 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
51745500 AATGTGACTG
*
51745510 GGCCTAACGGGCCATA-TAAATGTGATTTA
1 GGCCTAATGGGCCATATTAAA-GTGATTTA
* *
51745539 GGCCTAATGGGCCATATTCAAGTGATTTG
1 GGCCTAATGGGCCATATTAAAGTGATTTA
*
51745568 GGCCTAATCGGCCA
1 GGCCTAATGGGCCA
51745582 AATGAATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (29 bp):
GGCCTAATGGGCCATATTAAAGTGATTTA
Found at i:51748420 original size:20 final size:21
Alignment explanation
Indices: 51748395--51748458 Score: 89
Period size: 20 Copynumber: 3.2 Consensus size: 21
51748385 CTTTGATAGT
51748395 CCTGTTTGCACTAT-GGTGCC
1 CCTGTTTGCACTATCGGTGCC
*
51748415 CCTGTTTGCA-TATCTGTGCC
1 CCTGTTTGCACTATCGGTGCC
*
51748435 CCTGTTTGCACT-TCAGTGCC
1 CCTGTTTGCACTATCGGTGCC
51748455 CCTG
1 CCTG
51748459 ACTGCATGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.08
20 36 0.90
21 1 0.03
ACGTcount: A:0.09, C:0.33, G:0.22, T:0.36
Consensus pattern (21 bp):
CCTGTTTGCACTATCGGTGCC
Found at i:51750589 original size:29 final size:29
Alignment explanation
Indices: 51750551--51750607 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
51750541 AGGTGTTAGC
*
51750551 ATGAAAATACCTAAAATGACTATTTTGTT
1 ATGAAAATACCTAAAAGGACTATTTTGTT
*
51750580 ATGAAAATACCTGAAAGGACTATTTTGT
1 ATGAAAATACCTAAAAGGACTATTTTGT
51750608 ATAAGTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (29 bp):
ATGAAAATACCTAAAAGGACTATTTTGTT
Found at i:51751288 original size:46 final size:46
Alignment explanation
Indices: 51751094--51751314 Score: 141
Period size: 46 Copynumber: 4.7 Consensus size: 46
51751084 TTATTATGGG
* * * * * *
51751094 CTAGTGAAAGACATGTGTGGGACATGCATCGGCCAC-ATTATGAAAG-
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GACG-TAGT
* * * *
51751140 CTTGTGTAAGACCATGTCCGGGATATGGCATCGGC-ATCGGGACG-AGT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGACGTAGT
* * *
51751187 GCTAGTGTAAGACATGTCCGGGACATGCATCGGCCT-CAAAACGTAAG-
1 -CTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGT-AGT
* * *
51751234 CCAATGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACG-TAGT
*
51751281 C-AGTGTAAGACCATGTCTGGGATATGGCATCGGC
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
51751315 ACCCTACCCC
Statistics
Matches: 139, Mismatches: 21, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
45 2 0.01
46 65 0.47
47 41 0.29
48 31 0.22
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGTAGT
Found at i:51752745 original size:40 final size:40
Alignment explanation
Indices: 51752700--51752867 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
51752690 CGGAATATAA
*
51752700 CCGGATATAATCACGAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51752740 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51752780 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51752820 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
51752860 CCGGATAT
1 CCGGATAT
51752868 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 101 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51752850 original size:80 final size:80
Alignment explanation
Indices: 51752715--51752865 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
51752705 TATAATCACG
*
51752715 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAG
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAG
51752779 CCCGGATGTAGCCACT
65 CCCGGATGTAGCCACT
* * * * *
51752795 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTA
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTA
51752858 GCCCGGAT
64 GCCCGGAT
51752866 ATCATTCAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 58 0.94
81 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGC
CCGGATGTAGCCACT
Found at i:51754187 original size:55 final size:56
Alignment explanation
Indices: 51754074--51754199 Score: 245
Period size: 55 Copynumber: 2.3 Consensus size: 56
51754064 CCTTAGTATT
51754074 TTCGGCCAAGAAGTGAAAATGGATGAGCAAAATTTTTCTTTTCTTTCCTTAGGACA
1 TTCGGCCAAGAAGTGAAAATGGATGAGCAAAATTTTTCTTTTCTTTCCTTAGGACA
51754130 TTCGGCCAAGAAGTGAAAATGGATGAGC-AAATTTTTCTTTTCTTTCCTTAGGACA
1 TTCGGCCAAGAAGTGAAAATGGATGAGCAAAATTTTTCTTTTCTTTCCTTAGGACA
51754185 TTCGGCCAAGAAGTG
1 TTCGGCCAAGAAGTG
51754200 GTGAAAGATG
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
55 42 0.60
56 28 0.40
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (56 bp):
TTCGGCCAAGAAGTGAAAATGGATGAGCAAAATTTTTCTTTTCTTTCCTTAGGACA
Found at i:51764436 original size:47 final size:46
Alignment explanation
Indices: 51764322--51764543 Score: 172
Period size: 47 Copynumber: 4.8 Consensus size: 46
51764312 GTTATTGTGG
* * * * *
51764322 GCTAGTGTAAGACATGTTTAGGACATGCATCGGCCA-C-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGA-GACGATA
* *
51764368 GCCTA-TATAAGACAATGTCTGGGATATGGCATCGGCATCGAGACGAGT-
1 G-CTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATCGAGACGA-TA
* *
51764416 GCTAGTGTATGACATGTCTGGGACATGCA-CGGCCTCGAGAC-ATTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGA-TA
* * *
51764461 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-TACGAAATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGATA
*
51764507 G-TCAGTGTAAGACCATGTCTGGGATATGGCATCGGCA
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
51764544 CCCTACCCCA
Statistics
Matches: 143, Mismatches: 18, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
44 2 0.01
45 39 0.27
46 31 0.22
47 44 0.31
48 26 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGATA
Found at i:51764468 original size:45 final size:46
Alignment explanation
Indices: 51764375--51764543 Score: 166
Period size: 45 Copynumber: 3.6 Consensus size: 46
51764365 AGAGCCTATA
* *
51764375 TAAGACAATGTCTGGGATATGGCATCGGCATCGAGACGAGTGCTAGTG
1 TAAGAC-ATGTCTGGGACAT-GCATCGGCATCGAGACGAGTGCCAGTG
* * *
51764423 TATGACATGTCTGGGACATGCA-CGGCCTCGAGAC-ATTAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGT-GCCAGTG
* * *
51764468 TAAGACATGTCTGGGACATGCATCGGC-TACGAAATGA-TAGTCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGAGT-GCCAGTG
*
51764514 TAAGACCATGTCTGGGATATGGCATCGGCA
1 TAAGA-CATGTCTGGGACAT-GCATCGGCA
51764544 CCCTACCCCA
Statistics
Matches: 104, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
44 2 0.02
45 39 0.38
46 24 0.23
47 26 0.25
48 13 0.12
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGTGCCAGTG
Found at i:51776570 original size:46 final size:44
Alignment explanation
Indices: 51776475--51776589 Score: 144
Period size: 46 Copynumber: 2.5 Consensus size: 44
51776465 GTACCGATTC
*
51776475 CATGTCCTAGACATGGTCTTACACTGACACATCTCGTAGTCGATG
1 CATGTCCTAGACAT-GTCTTACACTGACACATCTCGTAGCCGATG
* *
51776520 CATGTCCTAGACATGTCTTACATTGACTCATGTCTCG-AGACCGATG
1 CATGTCCTAGACATGTCTTACACTGACACA--TCTCGTAG-CCGATG
51776566 CATGT-CTCAGACATGTCTTACACT
1 CATGTCCT-AGACATGTCTTACACT
51776590 AGCACTTGTC
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
44 14 0.23
45 18 0.29
46 30 0.48
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (44 bp):
CATGTCCTAGACATGTCTTACACTGACACATCTCGTAGCCGATG
Found at i:51779268 original size:56 final size:56
Alignment explanation
Indices: 51779187--51779298 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
51779177 CACCCAATAT
51779187 GTGCCTCATCTAAAATCTTCCAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
1 GTGCCTCATCTAAAATCTTCCAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
* *
51779243 GTGCCTTATCTAAAATCTTCTAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
1 GTGCCTCATCTAAAATCTTCCAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
51779299 TCTTTGAACA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (56 bp):
GTGCCTCATCTAAAATCTTCCAGGTCAATTCTTTGTTCTTGGGTACACAAACTCTA
Found at i:51784754 original size:55 final size:53
Alignment explanation
Indices: 51784599--51784805 Score: 153
Period size: 53 Copynumber: 3.8 Consensus size: 53
51784589 TTCCTTTTTA
* * * *
51784599 AACTTACCATTGCCATGTCTTGACATGATCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * * *
51784652 AACTCACCATTCCCACGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * * * *
51784706 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* * ** * * *
51784761 AACTTACAAATTTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
51784806 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 35, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
53 43 0.37
54 35 0.30
55 39 0.33
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:51784922 original size:13 final size:13
Alignment explanation
Indices: 51784904--51784937 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
51784894 AATCATCAAG
51784904 GAATAAATTTACA
1 GAATAAATTTACA
51784917 GAATAAATTTACA
1 GAATAAATTTACA
*
51784930 AAATAAAT
1 GAATAAAT
51784938 ATATAGATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (13 bp):
GAATAAATTTACA
Found at i:51792122 original size:53 final size:54
Alignment explanation
Indices: 51792053--51792259 Score: 193
Period size: 53 Copynumber: 3.8 Consensus size: 54
51792043 TTCCTTTTTA
* * * * *
51792053 AACTTACCATTTCCATGTCTTAGAATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGGAATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
51792106 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGGAATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
51792160 TAGTTTATCAATGCCATGTCTT-GACATGGTTTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGGA-ATGGTCTTACATGGTATCCTTGCCTTATAG
* *
51792215 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGGAATGGTCTTACATGGTATCCTT
51792260 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 31, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
53 44 0.37
54 36 0.30
55 39 0.33
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGGAATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:51794120 original size:40 final size:40
Alignment explanation
Indices: 51794061--51794268 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
51794051 CAATTGAATG
* * * *
51794061 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
51794101 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51794141 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51794181 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
51794221 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
51794261 ATATCCGG
1 ATATCCGG
51794269 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:51794199 original size:80 final size:80
Alignment explanation
Indices: 51794062--51794268 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
51794052 AATTGAATGA
* * ** * * *
51794062 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
51794127 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
51794140 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
51794205 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
51794222 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51794269 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:51802278 original size:40 final size:40
Alignment explanation
Indices: 51802219--51802426 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
51802209 CAATTGAATG
* * * *
51802219 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
51802259 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51802299 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51802339 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
51802379 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
51802419 ATATCCGG
1 ATATCCGG
51802427 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:51802357 original size:80 final size:80
Alignment explanation
Indices: 51802220--51802426 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
51802210 AATTGAATGA
* * ** * * *
51802220 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
51802285 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
51802298 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
51802363 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
51802380 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51802427 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:51811729 original size:46 final size:45
Alignment explanation
Indices: 51811664--51811834 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
51811654 ACATCAAATA
* *
51811664 GCCGATGCATGTCCCAGACATGTCTTACACTG-ACTTACGTCTCGA-
1 GCCGATGCATGTCCTAGACATGTCTTACACTGCAC-T-CGTCTCAAT
51811709 GACCGATGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAAT
1 G-CCGATGCATGTCCTAGACATGTCTTACACT-GCACTCGTCTCAAT
* * **
51811756 GCCAATGCCATGTCCTAGACATGGTCTTACACTG-GCTC-TCAAAATGT
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGCACTCGTCTCAA--T
* *
51811803 AGCCGATGCAAGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCTAGACATGTCTTACACT
51811835 AGCTCACAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 17
0.81 0.07 0.13
Matches are distributed among these distances:
45 5 0.05
46 54 0.50
47 31 0.29
48 18 0.17
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGCACTCGTCTCAAT
Found at i:51817444 original size:48 final size:48
Alignment explanation
Indices: 51817352--51817445 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
51817342 GATTAATTAG
* * *
51817352 AGCCAGTGTAAGACCATGCCTGGGACATGACATTAGCGTTGATATGAT
1 AGCCAGTGTAAGACCATGCCTGGGACATGACATCAGCATGGATATGAT
* * *
51817400 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATG
1 AGCCAGTGTAAGACCATGCCTGGGACATGACATCAGCATGGATATG
51817446 TGTGTCATTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGCCTGGGACATGACATCAGCATGGATATGAT
Found at i:51818788 original size:29 final size:28
Alignment explanation
Indices: 51818731--51818816 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
51818721 TACCTGTATC
* *
51818731 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
51818759 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* * *
51818788 TGACCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
51818816 T
1 T
51818817 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 26 0.52
29 24 0.48
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:51819053 original size:16 final size:16
Alignment explanation
Indices: 51819032--51819071 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
51819022 CAAACTTTTG
51819032 GCTTTTCGACATTTCA
1 GCTTTTCGACATTTCA
* *
51819048 GCTTTTCGGCTTTTCA
1 GCTTTTCGACATTTCA
*
51819064 GCATTTCG
1 GCTTTTCG
51819072 GCTTTTGCCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.45
Consensus pattern (16 bp):
GCTTTTCGACATTTCA
Found at i:51819059 original size:24 final size:23
Alignment explanation
Indices: 51819026--51819078 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
51819016 TGTAGCCAAA
51819026 CTTTTGGCTTTTC-GACATTTCAG
1 CTTTTGGCTTTTCAG-CATTTCAG
*
51819049 CTTTTCGGCTTTTCAGCATTTCGG
1 CTTTT-GGCTTTTCAGCATTTCAG
51819073 CTTTTG
1 CTTTTG
51819079 CCGATACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 6 0.22
24 20 0.74
25 1 0.04
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (23 bp):
CTTTTGGCTTTTCAGCATTTCAG
Found at i:51819072 original size:16 final size:16
Alignment explanation
Indices: 51819043--51819077 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
51819033 CTTTTCGACA
*
51819043 TTTCAGCTTTTCGGCT
1 TTTCAGCATTTCGGCT
51819059 TTTCAGCATTTCGGCT
1 TTTCAGCATTTCGGCT
51819075 TTT
1 TTT
51819078 GCCGATACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.23, G:0.17, T:0.51
Consensus pattern (16 bp):
TTTCAGCATTTCGGCT
Found at i:51823030 original size:41 final size:41
Alignment explanation
Indices: 51822973--51823151 Score: 281
Period size: 41 Copynumber: 4.3 Consensus size: 41
51822963 ACATAAAATT
*
51822973 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
51823014 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
51823057 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
51823098 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
51823139 TGCAAGGCAATAA
1 TGCTAGGCAATAA
51823152 AGCCCGAATA
Statistics
Matches: 130, Mismatches: 4, Indels: 8
0.92 0.03 0.06
Matches are distributed among these distances:
41 88 0.68
42 3 0.02
43 39 0.30
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:51823106 original size:84 final size:82
Alignment explanation
Indices: 51822973--51823151 Score: 281
Period size: 84 Copynumber: 2.2 Consensus size: 82
51822963 ACATAAAATT
*
51822973 TGCTAGGC-ATAAAGCCTAGTATAATACACCGGCACAGAGCCTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAAT-AAGCCTAGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
*
51823037 ATACACCGGCATATAAAGCC
65 ATACACCGGC--ACAAAGCC
51823057 TGCTAGGCAATAAGCCT-GATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAATAAGCCTAG-TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
51823121 ATACACCGGCACAAAGCC
65 ATACACCGGCACAAAGCC
*
51823139 TGCAAGGCAATAA
1 TGCTAGGCAATAA
51823152 AGCCCGAATA
Statistics
Matches: 90, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
82 19 0.21
83 1 0.01
84 68 0.76
85 2 0.02
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (82 bp):
TGCTAGGCAATAAGCCTAGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
TACACCGGCACAAAGCC
Found at i:51827248 original size:46 final size:46
Alignment explanation
Indices: 51827173--51827335 Score: 172
Period size: 46 Copynumber: 3.5 Consensus size: 46
51827163 TGTAACCCTC
* *
51827173 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
51827219 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
51827269 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
51827312 CCATAAGTGAACTCGGACTCAACT
1 CCATAAGTGAACTCGGACTCAACT
51827336 TGTAATATCC
Statistics
Matches: 95, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 48 0.51
47 27 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:51828681 original size:46 final size:46
Alignment explanation
Indices: 51828628--51828803 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
51828618 TATTTGGGCA
51828628 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
51828674 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
51828721 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
51828767 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51828804 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:51828783 original size:93 final size:93
Alignment explanation
Indices: 51828624--51828795 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51828614 GGGATATTTG
* *
51828624 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51828689 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
51828717 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51828782 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
51828796 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51831777 original size:15 final size:15
Alignment explanation
Indices: 51831757--51831825 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
51831747 GTATCTTGGG
51831757 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
51831772 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
51831787 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
51831802 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
51831817 TTTCTTTAT
1 TTTCTTTAT
51831826 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:51831826 original size:30 final size:30
Alignment explanation
Indices: 51831748--51831835 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
51831738 CATAGTATCG
* * * *
51831748 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
51831778 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
51831808 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
51831836 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:51834271 original size:46 final size:46
Alignment explanation
Indices: 51834221--51834396 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
51834211 TATTTGGGCA
51834221 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
51834267 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
51834314 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
51834360 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51834397 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:51834376 original size:93 final size:93
Alignment explanation
Indices: 51834217--51834388 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51834207 TGGATATTTG
* *
51834217 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51834282 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
51834310 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51834375 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
51834389 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51838145 original size:30 final size:30
Alignment explanation
Indices: 51838110--51838189 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
51838100 CAAGGAAACC
*
51838110 GAATAAAGAAATCCAAGATAGAGAAATCCA
1 GAATAAAGAAATCCAAGATAAAGAAATCCA
* * *
51838140 GAATAAAGAATTCC-AGAATAAAGAGATTCA
1 GAATAAAGAAATCCAAG-ATAAAGAAATCCA
* *
51838170 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
51838190 TGATACTATG
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 2 0.05
30 37 0.90
31 2 0.05
ACGTcount: A:0.55, C:0.12, G:0.17, T:0.15
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAATCCA
Found at i:51838149 original size:15 final size:15
Alignment explanation
Indices: 51838110--51838180 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
51838100 CAAGGAAACC
51838110 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
51838125 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
*
51838140 GAATAAAGAATTCCA
1 GAATAAAGAAATCCA
* *
51838155 GAATAAAGAGATTCA
1 GAATAAAGAAATCCA
*
51838170 GGATAAAGAAA
1 GAATAAAGAAA
51838181 CCCAAGATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
14 1 0.02
15 44 0.96
16 1 0.02
ACGTcount: A:0.56, C:0.10, G:0.18, T:0.15
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:51838189 original size:15 final size:15
Alignment explanation
Indices: 51838112--51838189 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
51838102 AGGAAACCGA
51838112 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
51838127 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
51838141 AATAAAGAATTCC-AG
1 -ATAAAGAAATCCAAG
* * *
51838156 AATAAAGAGATTCAGG
1 -ATAAAGAAATCCAAG
*
51838172 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51838187 ATA
1 ATA
51838190 TGATACTATG
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
14 2 0.04
15 47 0.94
16 1 0.02
ACGTcount: A:0.55, C:0.13, G:0.17, T:0.15
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51841950 original size:40 final size:40
Alignment explanation
Indices: 51841784--51841968 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
51841774 TTCGAATGAT
* * *
51841784 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
51841824 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
51841864 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
51841904 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
51841945 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
51841969 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:51841962 original size:80 final size:80
Alignment explanation
Indices: 51841784--51841971 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
51841774 TTCGAATGAT
* *
51841784 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAATAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
51841849 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
51841864 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGAATAAGAT-CCGAAGG
* *
51841925 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
51841945 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
51841972 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:51849921 original size:40 final size:40
Alignment explanation
Indices: 51849755--51849939 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
51849745 TTCGAATGAT
* * *
51849755 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
51849795 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
51849835 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
51849875 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
51849916 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
51849940 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:51849933 original size:80 final size:80
Alignment explanation
Indices: 51849755--51849942 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
51849745 TTCGAATGAT
* *
51849755 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAATAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
51849820 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
51849835 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGAATAAGAT-CCGAAGG
* *
51849896 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
51849916 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
51849943 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:51852412 original size:93 final size:93
Alignment explanation
Indices: 51852253--51852427 Score: 278
Period size: 93 Copynumber: 1.9 Consensus size: 93
51852243 CGCCCATAAG
* * * * *
51852253 CGAACTCGGACTCAATTCAACGAGCTCGGGCGTTCGCATCTATGAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
51852318 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
51852346 CGAACTCTGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
51852411 ACGAGTTCGGATGCCTA
66 ACGAGTTCGGATGCCTA
51852428 AACATCCTAG
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51852421 original size:46 final size:46
Alignment explanation
Indices: 51852246--51852421 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
51852236 TGTAACCCGC
* * * *
51852246 CCATAAGCGAACTCGGACTCAATTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * * *
51852292 CTATGAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51852342 -C-TCA-CGAACTCTGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51852385 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51852422 TGCCTAAACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51854821 original size:48 final size:48
Alignment explanation
Indices: 51854751--51854916 Score: 187
Period size: 48 Copynumber: 3.5 Consensus size: 48
51854741 TCCTAGATAG
* ** *
51854751 GTCTTACACTAGCTTGTC-TATCTCGAGGCAAATCCATGTCCCAGACAT
1 GTCTTACACTAGCTT-ACATATCTCGAGGCCGATGCATGTCCCAGACAT
* * *
51854799 GTCTTACACTGGCTTAAATATCTCGAGGCCGATGTATGTCCCAGACAT
1 GTCTTACACTAGCTTACATATCTCGAGGCCGATGCATGTCCCAGACAT
* * *
51854847 ATCTTACACTGGCTCT-CATAT-T-GTGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCT-TACATATCTCGAGGCCGATGCATGTCCCAGACAT
*
51854893 GTCTTACACTAGCATACATATCTC
1 GTCTTACACTAGCTTACATATCTC
51854917 CCAATATCAA
Statistics
Matches: 99, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 38 0.38
47 2 0.02
48 57 0.58
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (48 bp):
GTCTTACACTAGCTTACATATCTCGAGGCCGATGCATGTCCCAGACAT
Found at i:51869972 original size:49 final size:49
Alignment explanation
Indices: 51869912--51870224 Score: 545
Period size: 49 Copynumber: 6.4 Consensus size: 49
51869902 TACATATATG
* * * * *
51869912 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
51869961 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
51870010 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
51870059 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
51870108 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
51870157 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
51870206 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
51870225 TAATGTAAAA
Statistics
Matches: 255, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 255 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:51870356 original size:21 final size:21
Alignment explanation
Indices: 51870332--51870393 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
51870322 TGTTACGGGT
51870332 GAGACCCGATGACTACGTGTG
1 GAGACCCGATGACTACGTGTG
** *
51870353 GAGA--TTATGAC--CGGGT-
1 GAGACCCGATGACTACGTGTG
*
51870369 AAGACCCGATGACTACGTGTG
1 GAGACCCGATGACTACGTGTG
51870390 GAGA
1 GAGA
51870394 TTATGTCCGG
Statistics
Matches: 28, Mismatches: 8, Indels: 10
0.61 0.17 0.22
Matches are distributed among these distances:
16 3 0.11
17 4 0.14
18 5 0.18
19 5 0.18
20 4 0.14
21 7 0.25
ACGTcount: A:0.27, C:0.19, G:0.34, T:0.19
Consensus pattern (21 bp):
GAGACCCGATGACTACGTGTG
Found at i:51870377 original size:37 final size:37
Alignment explanation
Indices: 51870327--51870410 Score: 150
Period size: 37 Copynumber: 2.3 Consensus size: 37
51870317 GAATATGTTA
*
51870327 CGGGTGAGACCCGATGACTACGTGTGGAGATTATGAC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
*
51870364 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
51870401 CGGGTAAGAC
1 CGGGTAAGAC
51870411 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.21
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
Found at i:51872036 original size:46 final size:46
Alignment explanation
Indices: 51871918--51872052 Score: 161
Period size: 46 Copynumber: 3.0 Consensus size: 46
51871908 TGTCTATCTT
*
51871918 GAGGTCGATGCATGTCCCAAACATGTCTTACACTGGCT-T-A-ATC
1 GAGGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATATC
* * *
51871961 GAGGCCAATGCATGTCCCAGACATTTCTTACACTGGCTCTCATATC
1 GAGGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATATC
* * * *
51872007 -ATGGCTGATGCATGTCCCACACATGTCTTACACTAGCTCACATATC
1 GA-GGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATATC
51872053 TTCCAATATC
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
43 34 0.44
44 1 0.01
45 2 0.03
46 41 0.53
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
GAGGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATATC
Found at i:51873491 original size:10 final size:10
Alignment explanation
Indices: 51873476--51873522 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
51873466 GCTTATAATC
51873476 CATACCAAAT
1 CATACCAAAT
51873486 CATACCAAAT
1 CATACCAAAT
51873496 CATAAGCCAAAGT
1 CAT-A-CCAAA-T
*
51873509 CATACCAAAA
1 CATACCAAAT
51873519 CATA
1 CATA
51873523 TGTTTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 17 0.52
11 6 0.18
12 6 0.18
13 4 0.12
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.17
Consensus pattern (10 bp):
CATACCAAAT
Found at i:51873512 original size:23 final size:22
Alignment explanation
Indices: 51873480--51873522 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
51873470 ATAATCCATA
*
51873480 CCAAATCATACCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
51873502 CCAAAGTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
51873523 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:51884201 original size:32 final size:32
Alignment explanation
Indices: 51884157--51884249 Score: 84
Period size: 33 Copynumber: 2.8 Consensus size: 32
51884147 TCAAGCCCAT
*
51884157 TGGGCCTAAGCCC-ATTCAGATAACAGTGATAC
1 TGGGCC-AAGCCCTATTCAGATAACAGTGAAAC
* * *
51884189 TGGGCCAGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCA-AGCCCTATTCAGATAACAGTGAAAC
51884221 T-GGCCATAGCCCCTTATTCAGATAACAGT
1 TGGGCCA-AG-CCC-TATTCAGATAACAGT
51884250 ATGGCCCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
31 8 0.16
32 19 0.39
33 21 0.43
34 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (32 bp):
TGGGCCAAGCCCTATTCAGATAACAGTGAAAC
Found at i:51884605 original size:26 final size:26
Alignment explanation
Indices: 51884559--51884611 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
51884549 TCAAACATTC
*
51884559 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
51884585 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
51884611 A
1 A
51884612 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:51891109 original size:402 final size:402
Alignment explanation
Indices: 51890359--51891165 Score: 1524
Period size: 402 Copynumber: 2.0 Consensus size: 402
51890349 TCCTTTCTCC
51890359 GTGCACCCACATAGCTAGCTCTGACATACTTCGCCTTGAAGGACTGCTTAAACAACTCCCAAGTT
1 GTGCACCCACATAGCTAGCTCTGACATACTTCGCCTTGAAGGACTGCTTAAACAACTCCCAAGTT
51890424 AACCTCTCAGCTGGGGTACCCTCTCTCACAGTGATCCACCACTGATTTGCCTTGTCGCGCAACAA
66 AACCTCTCAGCTGGGGTACCCTCTCTCACAGTGATCCACCACTGATTTGCCTTGTCGCGCAACAA
51890489 GGACACCGACCCTTGCATCTTTTACTCCACTATGCAGTCCAGGTCATCCATAATCCGCTCCGTGG
131 GGACACCGACCCTTGCATCTTTTACTCCACTATGCAGTCCAGGTCATCCATAATCCGCTCCGTGG
*
51890554 CTTCCAGCCAGTACTCAGCCACATTTGGGGCTACTCTAGATATACCCCTAAAGACCTCCGCTCCG
196 CTTCCAGCCAGTACTCAGCCACATTTGGGGCTACTCTAGATATACCCCTAAAGACCTCCACTCCG
51890619 TTGGCCCGGAGTCGCTCAGAAATGGACCCCCTATTGATGGGCCCGATATTAGCTCCGGCCACCCT
261 TTGGCCCGGAGTCGCTCAGAAATGGACCCCCTATTGATGGGCCCGATATTAGCTCCGGCCACCCT
*
51890684 TTCCAAATCTCTTAACATGGCCTAGGACAGAGTATAATCCCCCGCGGCCCGATCATACGACCCGT
326 TTCCAAATCTCTTAACATGGCCTAGGACAGAGCATAATCCCCCGCGGCCCGATCATACGACCCGT
51890749 TCTCATCCACCA
391 TCTCATCCACCA
*
51890761 GTGCATCCACATAGCTAGCTCTGACATACTTCGCCTTGAAGGACTGCTTAAACAACTCCCAAGTT
1 GTGCACCCACATAGCTAGCTCTGACATACTTCGCCTTGAAGGACTGCTTAAACAACTCCCAAGTT
* *
51890826 ACCCTCTCAGCTGGGGTACCCTCTCTCACAGTGATCCACCACTGATTTGCCTTGTCGCGCAGCAA
66 AACCTCTCAGCTGGGGTACCCTCTCTCACAGTGATCCACCACTGATTTGCCTTGTCGCGCAACAA
* *
51890891 GGACACCGACCCTTGCATCTTTTAGTCCACTGTGCAGTCCAGGTCATCCATAATCCGCTCCGTGG
131 GGACACCGACCCTTGCATCTTTTACTCCACTATGCAGTCCAGGTCATCCATAATCCGCTCCGTGG
*
51890956 CTTTCAGCCAGTACTCAGCCACATTTGGGGCTACTCTAGATATACCCCTAAAGACCTCCACTCCG
196 CTTCCAGCCAGTACTCAGCCACATTTGGGGCTACTCTAGATATACCCCTAAAGACCTCCACTCCG
*
51891021 TTGGCCCGGAGTCGCTCAGAAATGGACCCCCTATTGATGGGCCCGATATTAGCTCCGGCCACGCT
261 TTGGCCCGGAGTCGCTCAGAAATGGACCCCCTATTGATGGGCCCGATATTAGCTCCGGCCACCCT
*
51891086 TTCCAAATCTCTTAACATGGCCTAGGACAGAGCGTAATCCCCCGCGGCCCGATCATACGACCCGT
326 TTCCAAATCTCTTAACATGGCCTAGGACAGAGCATAATCCCCCGCGGCCCGATCATACGACCCGT
51891151 TCTCATCCACCA
391 TCTCATCCACCA
51891163 GTG
1 GTG
51891166 GTGATCATGC
Statistics
Matches: 395, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
402 395 1.00
ACGTcount: A:0.22, C:0.34, G:0.19, T:0.24
Consensus pattern (402 bp):
GTGCACCCACATAGCTAGCTCTGACATACTTCGCCTTGAAGGACTGCTTAAACAACTCCCAAGTT
AACCTCTCAGCTGGGGTACCCTCTCTCACAGTGATCCACCACTGATTTGCCTTGTCGCGCAACAA
GGACACCGACCCTTGCATCTTTTACTCCACTATGCAGTCCAGGTCATCCATAATCCGCTCCGTGG
CTTCCAGCCAGTACTCAGCCACATTTGGGGCTACTCTAGATATACCCCTAAAGACCTCCACTCCG
TTGGCCCGGAGTCGCTCAGAAATGGACCCCCTATTGATGGGCCCGATATTAGCTCCGGCCACCCT
TTCCAAATCTCTTAACATGGCCTAGGACAGAGCATAATCCCCCGCGGCCCGATCATACGACCCGT
TCTCATCCACCA
Found at i:51892874 original size:25 final size:27
Alignment explanation
Indices: 51892837--51892889 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
51892827 TCAAACATGC
51892837 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
51892863 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
51892889 A
1 A
51892890 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:51898717 original size:8 final size:8
Alignment explanation
Indices: 51898706--51898754 Score: 75
Period size: 8 Copynumber: 6.4 Consensus size: 8
51898696 TATACAGGTA
51898706 TTATTTTT
1 TTATTTTT
51898714 TTATTTTT
1 TTATTTTT
51898722 TTATTTTT
1 TTATTTTT
51898730 TTA-TTTT
1 TTATTTTT
51898737 TTATTTTT
1 TTATTTTT
*
51898745 AT-TTTTT
1 TTATTTTT
51898752 TTA
1 TTA
51898755 AGAACAAGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
7 13 0.35
8 24 0.65
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (8 bp):
TTATTTTT
Found at i:51898727 original size:16 final size:16
Alignment explanation
Indices: 51898706--51898754 Score: 75
Period size: 15 Copynumber: 3.2 Consensus size: 16
51898696 TATACAGGTA
51898706 TTATTTTTTTATTTTT
1 TTATTTTTTTATTTTT
51898722 TTATTTTTTTA-TTTT
1 TTATTTTTTTATTTTT
*
51898737 TTATTTTTAT-TTTTT
1 TTATTTTTTTATTTTT
51898752 TTA
1 TTA
51898755 AGAACAAGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
15 20 0.65
16 11 0.35
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (16 bp):
TTATTTTTTTATTTTT
Found at i:51908179 original size:22 final size:22
Alignment explanation
Indices: 51908151--51908204 Score: 81
Period size: 24 Copynumber: 2.4 Consensus size: 22
51908141 TGTTACTGGA
51908151 AGCTTACTGTTCAGCTCAATAG
1 AGCTTACTGTTCAGCTCAATAG
*
51908173 AGCTTACCGTTTTCAGCTCAATAG
1 AGCTTA-C-TGTTCAGCTCAATAG
51908197 AGCTTACT
1 AGCTTACT
51908205 ATTTATCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 7 0.24
23 2 0.07
24 20 0.69
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (22 bp):
AGCTTACTGTTCAGCTCAATAG
Found at i:51926934 original size:24 final size:24
Alignment explanation
Indices: 51926898--51926948 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
51926888 AGAATGAAGC
*
51926898 CCTCGTCCAGACGACGTGACCATT
1 CCTCATCCAGACGACGTGACCATT
*
51926922 CCTCATCCCGACGACGTGACCATT
1 CCTCATCCAGACGACGTGACCATT
51926946 CCT
1 CCT
51926949 TGTCACGACG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.41, G:0.18, T:0.22
Consensus pattern (24 bp):
CCTCATCCAGACGACGTGACCATT
Found at i:51926957 original size:24 final size:24
Alignment explanation
Indices: 51926907--51926960 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
51926897 CCCTCGTCCA
*
51926907 GACGACGTGACCATTCCTCATCCC
1 GACGACGTGACCATTCCTCATCAC
**
51926931 GACGACGTGACCATTCCTTGTCAC
1 GACGACGTGACCATTCCTCATCAC
51926955 GACGAC
1 GACGAC
51926961 CAAACGCCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.20
Consensus pattern (24 bp):
GACGACGTGACCATTCCTCATCAC
Found at i:51932736 original size:21 final size:21
Alignment explanation
Indices: 51932712--51932753 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
51932702 ATGTATGGCC
51932712 AACAATTGTAGCATACTGAAT
1 AACAATTGTAGCATACTGAAT
51932733 AACAATTGTAGCATACTGAAT
1 AACAATTGTAGCATACTGAAT
51932754 TAACCATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (21 bp):
AACAATTGTAGCATACTGAAT
Found at i:51938169 original size:46 final size:46
Alignment explanation
Indices: 51938119--51938294 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
51938109 TGGTTGAGCA
*
51938119 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
51938165 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
51938212 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
51938258 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51938295 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51938275 original size:93 final size:93
Alignment explanation
Indices: 51938116--51938287 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
51938106 GGATGGTTGA
* * *
51938116 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
51938181 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
51938209 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
51938274 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
51938288 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51939899 original size:12 final size:12
Alignment explanation
Indices: 51939863--51939922 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
51939853 AATTCCGCAT
*
51939863 ACATAGTGCCAT
1 ACATAGTGCCAC
*
51939875 ACATA-TACGCAC
1 ACATAGTGC-CAC
51939887 ACATAGTGCCAC
1 ACATAGTGCCAC
* *
51939899 ACA-AATACGCAC
1 ACATAGTGC-CAC
51939911 ACATAGTGCCAC
1 ACATAGTGCCAC
51939923 TCAAATCCGC
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
11 5 0.14
12 27 0.73
13 5 0.14
ACGTcount: A:0.38, C:0.32, G:0.13, T:0.17
Consensus pattern (12 bp):
ACATAGTGCCAC
Found at i:51939941 original size:24 final size:24
Alignment explanation
Indices: 51939835--51939933 Score: 117
Period size: 24 Copynumber: 4.1 Consensus size: 24
51939825 ATTCAACTCT
* * * *
51939835 GCACACATAGTGCCAAATAATTCC
1 GCACACATAGTGCCACACAAATAC
* * *
51939859 GCATACATAGTGCCATACATATAC
1 GCACACATAGTGCCACACAAATAC
51939883 GCACACATAGTGCCACACAAATAC
1 GCACACATAGTGCCACACAAATAC
* *
51939907 GCACACATAGTGCCACTCAAATCC
1 GCACACATAGTGCCACACAAATAC
51939931 GCA
1 GCA
51939934 TATCTAGTAC
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.37, C:0.31, G:0.13, T:0.18
Consensus pattern (24 bp):
GCACACATAGTGCCACACAAATAC
Found at i:51942835 original size:28 final size:27
Alignment explanation
Indices: 51942772--51942841 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51942762 ATAGTGAGTC
51942772 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51942799 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51942827 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51942842 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51950864 original size:28 final size:27
Alignment explanation
Indices: 51950801--51950870 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51950791 ATAGTGAGTC
51950801 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51950828 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51950856 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51950871 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51953541 original size:12 final size:13
Alignment explanation
Indices: 51953526--51953554 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
51953516 CGAAACTTTC
51953526 ACACATACT-TAA
1 ACACATACTGTAA
51953538 ACACATACTGTAA
1 ACACATACTGTAA
51953551 ACAC
1 ACAC
51953555 GAAAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.48, C:0.28, G:0.03, T:0.21
Consensus pattern (13 bp):
ACACATACTGTAA
Found at i:51959168 original size:12 final size:11
Alignment explanation
Indices: 51959135--51959169 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
51959125 TATATATTCA
51959135 TACCATTCAAT
1 TACCATTCAAT
*
51959146 TACCATCCAAT
1 TACCATTCAAT
51959157 TCACCATTCAAT
1 T-ACCATTCAAT
51959169 T
1 T
51959170 TCTCAACCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (11 bp):
TACCATTCAAT
Found at i:51968101 original size:11 final size:11
Alignment explanation
Indices: 51968085--51968117 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
51968075 AGACAAGGCT
51968085 AAATGAGTGTG
1 AAATGAGTGTG
51968096 AAATGAGTGTG
1 AAATGAGTGTG
51968107 AAATGAGTGTG
1 AAATGAGTGTG
51968118 TTTAACTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.27
Consensus pattern (11 bp):
AAATGAGTGTG
Found at i:51970482 original size:29 final size:29
Alignment explanation
Indices: 51970449--51970551 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
51970439 GTGACGAGAT
51970449 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
51970478 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
51970507 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
51970536 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
51970552 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:51978514 original size:29 final size:29
Alignment explanation
Indices: 51978481--51978583 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
51978471 GTGACGAGAT
51978481 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
51978510 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
51978539 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
51978568 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
51978584 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:51982155 original size:17 final size:17
Alignment explanation
Indices: 51982133--51982179 Score: 94
Period size: 17 Copynumber: 2.8 Consensus size: 17
51982123 AAATTTATTG
51982133 TGAAGTAAGCTTACTTT
1 TGAAGTAAGCTTACTTT
51982150 TGAAGTAAGCTTACTTT
1 TGAAGTAAGCTTACTTT
51982167 TGAAGTAAGCTTA
1 TGAAGTAAGCTTA
51982180 TTTAGGTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (17 bp):
TGAAGTAAGCTTACTTT
Found at i:51993899 original size:27 final size:27
Alignment explanation
Indices: 51993862--51993922 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
51993852 GGCCGAATCA
*
51993862 CACACACCCATAGGGCAAGCCATGCGT
1 CACACACCCATAGGGCAAGCCATGCAT
*
51993889 CACACACCCATGGGGCAAGCCATGCAT
1 CACACACCCATAGGGCAAGCCATGCAT
51993916 CACACAC
1 CACACAC
51993923 TAACTAGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.31, C:0.39, G:0.20, T:0.10
Consensus pattern (27 bp):
CACACACCCATAGGGCAAGCCATGCAT
Found at i:51994165 original size:56 final size:56
Alignment explanation
Indices: 51994098--51994208 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
51994088 TTCATTATCC
*
51994098 ACACTCAACATATTTACAACAACATATTTTGTCAAACCAAATCATACCAGCTCATT
1 ACACTCAACATATTTACAACAACATATTTTGTCAAACCAAATCATACCAACTCATT
*
51994154 ACACTCAACATATTTACAACAGCATATTTTGTCAAACCAAATCATACCAACTCAT
1 ACACTCAACATATTTACAACAACATATTTTGTCAAACCAAATCATACCAACTCAT
51994209 ATTCTACAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.41, C:0.27, G:0.04, T:0.28
Consensus pattern (56 bp):
ACACTCAACATATTTACAACAACATATTTTGTCAAACCAAATCATACCAACTCATT
Found at i:51998166 original size:43 final size:42
Alignment explanation
Indices: 51998106--51998264 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 42
51998096 AAGCTCATAC
51998106 AATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATAT
1 AATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATAT
*
51998148 CAATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAAT-AAA-AT
1 -AATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAATAT
** * * *
51998189 AGATGCTGATGTCCCAGACTTGGTCTTACACGTAAATCATAAGT-T
1 A-ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AA-TAT
* *
51998234 GATGCCAACGTCCCAGACATGGTCTTACATG
1 AATGCCAACGTCCCAGACGTGGTCTTACATG
51998265 AGAACACATA
Statistics
Matches: 94, Mismatches: 12, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
40 1 0.01
41 25 0.27
42 9 0.10
43 30 0.32
44 28 0.30
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
AATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATAT
Found at i:51998214 original size:41 final size:41
Alignment explanation
Indices: 51998115--51998265 Score: 135
Period size: 44 Copynumber: 3.6 Consensus size: 41
51998105 CAATGCCAAC
* * *
51998115 GTCCCAGACGTGGTCTTACATGTAATCAAATATCA-ATGCCACT
1 GTCCCAGACATGGTCTTACATGAAATCAAA-AT-AGATG-CAAT
* *
51998158 GTCCCAGACAGGGTCTTACATGAAAT-AAAATAGATGCTGAT
1 GTCCCAGACATGGTCTTACATGAAATCAAAATAGATGC-AAT
* * * * *
51998199 GTCCCAGACTTGGTCTTACACGTAAATCATAAGTTGATGCCAAC
1 GTCCCAGACATGGTCTTACATG-AAATCA-AAATAGATG-CAAT
51998243 GTCCCAGACATGGTCTTACATGA
1 GTCCCAGACATGGTCTTACATGA
51998266 GAACACATAT
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
40 2 0.02
41 25 0.28
42 7 0.08
43 25 0.28
44 28 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACATGAAATCAAAATAGATGCAAT
Found at i:52005003 original size:40 final size:40
Alignment explanation
Indices: 52004958--52005124 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
52004948 CGGAATATAA
52004958 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
52004998 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
52005038 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
52005078 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
52005117 CCGGATAT
1 CCGGATAT
52005125 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:52013010 original size:40 final size:40
Alignment explanation
Indices: 52012965--52013131 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
52012955 CGGAATATAA
52012965 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
52013005 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
52013045 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
52013085 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
52013124 CCGGATAT
1 CCGGATAT
52013132 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.