Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 185 of 345
Found at i:52643418 original size:30 final size:30
Alignment explanation
Indices: 52643340--52643427 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
52643330 CATAGTATCG
* * * *
52643340 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
52643370 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
52643400 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
52643428 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:52645866 original size:46 final size:46
Alignment explanation
Indices: 52645813--52645988 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
52645803 TATTTGGGCA
52645813 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
52645859 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
52645906 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
52645952 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
52645989 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:52645968 original size:93 final size:93
Alignment explanation
Indices: 52645809--52645980 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
52645799 GGGATATTTG
* *
52645809 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
52645874 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
52645902 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
52645967 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
52645981 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:52647736 original size:73 final size:73
Alignment explanation
Indices: 52647645--52647787 Score: 268
Period size: 73 Copynumber: 2.0 Consensus size: 73
52647635 GGCTAAGCAT
52647645 GGGTGTGGTCAAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGCGAAAAATGTGA
1 GGGTGTGGTCAAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGCGAAAAATGTGA
52647710 AATGTTAG
66 AATGTTAG
* *
52647718 GGGTGTGGTCGAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGTGAAAAATGTGA
1 GGGTGTGGTCAAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGCGAAAAATGTGA
52647783 AATGT
66 AATGT
52647788 CAAGGGAAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.38
Consensus pattern (73 bp):
GGGTGTGGTCAAATTTTGAATATTTTGTGTTTTGTGAAATAGGGACTAAATTGCGAAAAATGTGA
AATGTTAG
Found at i:52648390 original size:43 final size:42
Alignment explanation
Indices: 52648234--52648395 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 42
52648224 TGTGTTATCG
* * *
52648234 TGTAAGACCACGTTTGGGACGTTGGCATCGATTTTTGATTTACA
1 TGTAAGACCACGTCTAGGACGTTGGCATCG-TATTTGA-TTACA
* * * * * *
52648278 TGTAAGACCATGTCTAGGACATTGACATCGTATATGATTTCG
1 TGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGATTACA
* *
52648320 TGTACGACC-CTGTCTGGGACAG-TGGCATCAGTATTTGATTACA
1 TGTAAGACCAC-GTCTAGGAC-GTTGGCATC-GTATTTGATTACA
*
52648363 TGTAAGACCACGTCTAGGACGTTGGCATTGTAT
1 TGTAAGACCACGTCTAGGACGTTGGCATCGTAT
52648396 GAGCTTATGA
Statistics
Matches: 93, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
42 30 0.32
43 37 0.40
44 26 0.28
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGATTACA
Found at i:52660416 original size:27 final size:28
Alignment explanation
Indices: 52660360--52660429 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
52660350 AAATTTGTAC
52660360 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
52660388 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
52660415 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
52660430 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:52661967 original size:48 final size:48
Alignment explanation
Indices: 52661896--52662014 Score: 159
Period size: 48 Copynumber: 2.5 Consensus size: 48
52661886 GTGTTACAAA
* *
52661896 GATATTAGCACTTCGGGTGCGAGTTTCGTTAATTTGACTTCAG-GCCAT
1 GATATTAGCACTTCGGGTGCGAGTTACATTAATTTGACTTC-GTGCCAT
* * *
52661944 GATATTAGCACTTCGGGTGCGAGTTACATTGATTTGGCTTCGTGTCAT
1 GATATTAGCACTTCGGGTGCGAGTTACATTAATTTGACTTCGTGCCAT
* *
52661992 GATATTGGCACTTAGGGTGCGAG
1 GATATTAGCACTTCGGGTGCGAG
52662015 ACTCTTGAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
47 1 0.02
48 62 0.98
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (48 bp):
GATATTAGCACTTCGGGTGCGAGTTACATTAATTTGACTTCGTGCCAT
Found at i:52662844 original size:25 final size:25
Alignment explanation
Indices: 52662780--52662847 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
52662770 TAGGAGGGAG
* *
52662780 AATGTTCACACAAGTTGTAACGGTA
1 AATGTTCACACGAGTTATAACGGTA
* * *
52662805 ACTGCTCACACGAGTTATAACTGTA
1 AATGTTCACACGAGTTATAACGGTA
*
52662830 AATGTTCACATGAGTTAT
1 AATGTTCACACGAGTTAT
52662848 GAAATGGGTC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (25 bp):
AATGTTCACACGAGTTATAACGGTA
Found at i:52665665 original size:20 final size:20
Alignment explanation
Indices: 52665651--52665721 Score: 108
Period size: 20 Copynumber: 3.5 Consensus size: 20
52665641 GTTGAAATGA
52665651 ATGAATTACTGTTGATACAG
1 ATGAATTACTGTTGATACAG
52665671 ATGAATTACTGTTGATACAG
1 ATGAATTACTGTTGATACAG
* *
52665691 ATAAATTACTGTT-ATTACTG
1 ATGAATTACTGTTGA-TACAG
52665711 ATGAATTACTG
1 ATGAATTACTG
52665722 GTTATAGGAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 1 0.02
20 46 0.98
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (20 bp):
ATGAATTACTGTTGATACAG
Found at i:52665745 original size:40 final size:38
Alignment explanation
Indices: 52665670--52665767 Score: 92
Period size: 39 Copynumber: 2.5 Consensus size: 38
52665660 TGTTGATACA
*
52665670 GATGAATTACTGTTGATACAGATAAATTACTGTTATTACT
1 GATGAATTACTGTTGATACAGATAAACTACTGTTA-TA-T
* *
52665710 GATGAATTACTGGTT-ATA-GGATGAACTACTAGTTATAT
1 GATGAATTACT-GTTGATACAGATAAACTACT-GTTATAT
* *
52665748 GAATGAATTACAGTTTATAC
1 G-ATGAATTACTGTTGATAC
52665768 GAATAAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
38 5 0.10
39 23 0.47
40 18 0.37
41 3 0.06
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (38 bp):
GATGAATTACTGTTGATACAGATAAACTACTGTTATAT
Found at i:52665766 original size:20 final size:18
Alignment explanation
Indices: 52665711--52665762 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
52665701 GTTATTACTG
* *
52665711 ATGAATTACTGGTTATAGG
1 ATGAATTAC-AGTTATAGA
*
52665730 ATGAACTACTAGTTATATGA
1 ATGAATTAC-AGTTATA-GA
52665750 ATGAATTACAGTT
1 ATGAATTACAGTT
52665763 TATACGAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 19 0.68
20 9 0.32
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.37
Consensus pattern (18 bp):
ATGAATTACAGTTATAGA
Found at i:52665771 original size:20 final size:20
Alignment explanation
Indices: 52665649--52665771 Score: 87
Period size: 20 Copynumber: 6.2 Consensus size: 20
52665639 ATGTTGAAAT
*
52665649 GAATGAATTACTGTTGATAC
1 GAATGAATTACTGTTTATAC
*
52665669 -AGATGAATTACTGTTGATAC
1 GA-ATGAATTACTGTTTATAC
*
52665689 -AGATAAATTACTG-TTATTAC
1 GA-ATGAATTACTGTTTA-TAC
*
52665709 TG-ATGAATTACTGGTTATA-
1 -GAATGAATTACTGTTTATAC
* * *
52665728 GGATGAACTACTAG-TTATAT
1 GAATGAATTACT-GTTTATAC
*
52665748 GAATGAATTACAGTTTATAC
1 GAATGAATTACTGTTTATAC
52665768 GAAT
1 GAAT
52665772 AAAAATGAAT
Statistics
Matches: 86, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
18 1 0.01
19 18 0.21
20 64 0.74
21 3 0.03
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.37
Consensus pattern (20 bp):
GAATGAATTACTGTTTATAC
Found at i:52668688 original size:40 final size:40
Alignment explanation
Indices: 52668526--52668693 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
52668516 TCTTCAGAAT
* * *
52668526 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
52668565 TTAACCAGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
52668605 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
52668645 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
52668685 TTAGCCCGG
1 TTAGCCCGG
52668694 GTATCATTCA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:52673382 original size:40 final size:40
Alignment explanation
Indices: 52673327--52673490 Score: 161
Period size: 40 Copynumber: 4.1 Consensus size: 40
52673317 TGAATGATAC
* * * *
52673327 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
52673367 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATGT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
52673407 TCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
52673447 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
52673487 CCGG
1 CCGG
52673491 TTAAATCCCG
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 92 0.92
41 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:52674934 original size:2 final size:2
Alignment explanation
Indices: 52674927--52674957 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
52674917 CAATGATAGA
52674927 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
52674958 AAGTTCATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:52676850 original size:47 final size:46
Alignment explanation
Indices: 52676677--52676848 Score: 181
Period size: 47 Copynumber: 3.7 Consensus size: 46
52676667 TTTGTGTGCT
*
52676677 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-GATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACTCGATGATG--AGCC
* * * *
52676723 AATGTAAGACATGTCTGGGACATGGCGTCGGCCTCGATTTTGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACTCGA---TGATGAGCC
* *
52676771 AGTGTAAGACCATGTCTAGGACATGGCATC-GACTTGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGACTCGAT-GATGAGCC
52676818 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG
52676849 ACATTCTACC
Statistics
Matches: 107, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
45 1 0.01
46 25 0.23
47 44 0.41
48 16 0.15
49 18 0.17
51 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGACTCGATGATGAGCC
Found at i:52678628 original size:43 final size:43
Alignment explanation
Indices: 52678567--52678661 Score: 190
Period size: 43 Copynumber: 2.2 Consensus size: 43
52678557 CAAACGGGCT
52678567 GAGACACGGCCATGTGTCTCTATCGTGTGAGGGACACGGCCTG
1 GAGACACGGCCATGTGTCTCTATCGTGTGAGGGACACGGCCTG
52678610 GAGACACGGCCATGTGTCTCTATCGTGTGAGGGACACGGCCTG
1 GAGACACGGCCATGTGTCTCTATCGTGTGAGGGACACGGCCTG
52678653 GAGACACGG
1 GAGACACGG
52678662 ACGTGTGGCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.20, C:0.25, G:0.36, T:0.19
Consensus pattern (43 bp):
GAGACACGGCCATGTGTCTCTATCGTGTGAGGGACACGGCCTG
Found at i:52678680 original size:43 final size:43
Alignment explanation
Indices: 52678567--52678681 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
52678557 CAAACGGGCT
* * * * *
52678567 GAGACACGGCCATGTGTCTCTATCGTGTGAGGGACACGGCCTG
1 GAGACACGGACATGTGGCCCGACCGTGTGAGGGACACGGCCTG
* * * * *
52678610 GAGACACGGCCATGTGTCTCTATCGTGTGAGGGACACGGCCTG
1 GAGACACGGACATGTGGCCCGACCGTGTGAGGGACACGGCCTG
*
52678653 GAGACACGGACGTGTGGCCCGACCGTGTG
1 GAGACACGGACATGTGGCCCGACCGTGTG
52678682 GTTCGATGTG
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.18, C:0.26, G:0.37, T:0.19
Consensus pattern (43 bp):
GAGACACGGACATGTGGCCCGACCGTGTGAGGGACACGGCCTG
Found at i:52684151 original size:21 final size:21
Alignment explanation
Indices: 52684125--52684165 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
52684115 AGACAAGCGA
* *
52684125 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
52684146 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
52684166 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:52687220 original size:16 final size:15
Alignment explanation
Indices: 52687201--52687230 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
52687191 ACGCGTGATA
52687201 AAATTTAAATCAAAAT
1 AAATTTAAAT-AAAAT
52687217 AAATTTAAATAAAA
1 AAATTTAAATAAAA
52687231 GTTGTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATTTAAATAAAAT
Found at i:52688097 original size:24 final size:24
Alignment explanation
Indices: 52688070--52688129 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
52688060 AATTGTGTTA
*
52688070 TTTGATAATAATAAATTTTA-ATTT
1 TTTGATAATAAT-AATTTCATATTT
* *
52688094 TTTGAAAATTAATTATTTCATATTT
1 TTTGATAA-TAATAATTTCATATTT
52688119 TTT-ATAATAAT
1 TTTGATAATAAT
52688130 TTATATCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
23 4 0.13
24 15 0.50
25 11 0.37
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (24 bp):
TTTGATAATAATAATTTCATATTT
Found at i:52689720 original size:21 final size:21
Alignment explanation
Indices: 52689694--52689735 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
52689684 TGAGGGGAAG
52689694 GCTCTCAATTTATAGTTGAGC
1 GCTCTCAATTTATAGTTGAGC
52689715 GCTCTCAATTTATAGTTGAGC
1 GCTCTCAATTTATAGTTGAGC
52689736 TCCCTCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (21 bp):
GCTCTCAATTTATAGTTGAGC
Found at i:52689742 original size:21 final size:21
Alignment explanation
Indices: 52689697--52689743 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
52689687 GGGGAAGGCT
*
52689697 CTCAATTTATAGTTGAGCGCT
1 CTCAATTTATAGTTGAGCGCC
*
52689718 CTCAATTTATAGTTGAGCTCC
1 CTCAATTTATAGTTGAGCGCC
52689739 CTCAA
1 CTCAA
52689744 AATCGACGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (21 bp):
CTCAATTTATAGTTGAGCGCC
Found at i:52691801 original size:46 final size:47
Alignment explanation
Indices: 52691720--52691840 Score: 169
Period size: 46 Copynumber: 2.6 Consensus size: 47
52691710 GCCCATAAGC
* * *
52691720 GAACTCAGACTCAACTCAATGA-TCTC-GAGCGTTCGCATCCAT-GAGT
1 GAACTCGGACTCAACTCAACGAGT-TCGGAGCATTCGCATCCATAG-GT
52691766 GAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCATAGGT
52691812 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
52691841 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
46 65 0.94
47 4 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCATAGGT
Found at i:52693644 original size:96 final size:96
Alignment explanation
Indices: 52693478--52693667 Score: 317
Period size: 96 Copynumber: 2.0 Consensus size: 96
52693468 TTCTTTTTGC
*
52693478 TCCTCTTTACCCTCTTGGCTTCGGCCTTTCCCTTGCTCGAACCAAGCTTATTGGGCTCCTTGTCT
1 TCCTCCTTACCCTCTTGGCTTCGGCCTTTCCCTTGCTCGAACCAAGCTTATTGGGCTCCTTGTCT
*
52693543 GCTCCATCATTCCCTTCGATGACAGACTTGT
66 ACTCCATCATTCCCTTCGATGACAGACTTGT
* * *
52693574 TCCTCCTTGCCCTCTTGGCTTCGGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCTTGTCT
1 TCCTCCTTACCCTCTTGGCTTCGGCCTTTCCCTTGCTCGAACCAAGCTTATTGGGCTCCTTGTCT
* *
52693639 ACTCCATCGTTCCTTTCGATGACAGACTT
66 ACTCCATCATTCCCTTCGATGACAGACTT
52693668 CTTCAAACAC
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.12, C:0.35, G:0.17, T:0.37
Consensus pattern (96 bp):
TCCTCCTTACCCTCTTGGCTTCGGCCTTTCCCTTGCTCGAACCAAGCTTATTGGGCTCCTTGTCT
ACTCCATCATTCCCTTCGATGACAGACTTGT
Found at i:52698892 original size:30 final size:30
Alignment explanation
Indices: 52698858--52698920 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
52698848 ATTGATTTGA
*
52698858 AAGAGGTGATCTAATAACTAAGAATTAAAT
1 AAGAGGTGATCCAATAACTAAGAATTAAAT
*
52698888 AAGAGGTGATCCAATAACTAAGAATTAACT
1 AAGAGGTGATCCAATAACTAAGAATTAAAT
52698918 AAG
1 AAG
52698921 TAATCAACGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (30 bp):
AAGAGGTGATCCAATAACTAAGAATTAAAT
Found at i:52701090 original size:19 final size:19
Alignment explanation
Indices: 52701066--52701105 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
52701056 TGAATCGAGA
52701066 ATGCTAAAAGATAACTGGG
1 ATGCTAAAAGATAACTGGG
*
52701085 ATGCTAAAAGATAATTGGG
1 ATGCTAAAAGATAACTGGG
52701104 AT
1 AT
52701106 AGTAGAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.25
Consensus pattern (19 bp):
ATGCTAAAAGATAACTGGG
Found at i:52704885 original size:46 final size:46
Alignment explanation
Indices: 52704835--52705007 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
52704825 TGGTAGAGCA
52704835 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
52704881 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
52704926 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATC
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
52704974 TCTGAACTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
52705008 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 28 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:52704991 original size:93 final size:93
Alignment explanation
Indices: 52704832--52705002 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
52704822 GGATGGTAGA
*
52704832 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCCGAACTCGTTGAGT
52704897 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
52704925 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCTGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCCGAACTCGTTGAGT
52704990 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
52705003 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:52711582 original size:47 final size:45
Alignment explanation
Indices: 52711518--52711689 Score: 170
Period size: 47 Copynumber: 3.7 Consensus size: 45
52711508 CATTATGAGA
* *
52711518 GCTAGAGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TTGAGA-GAGT
* * * * *
52711566 GTTAGTGTAAGA-CATGTCTAGGACATGCATCGGCCTCGATAGTGAT
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGG-CTTGAGAGAG-T
*
52711612 AGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGC-TGAGAGATGT
1 -GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGAGAGA-GT
*
52711657 GCTAGTGTAAGACCATGTCTGGGATATGACATC
1 GCTAGTGTAAGACCATGTCTGGGACATG-CATC
52711690 AACATGCATA
Statistics
Matches: 103, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.11
45 21 0.20
46 17 0.17
47 44 0.43
48 10 0.10
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTTGAGAGAGT
Found at i:52711635 original size:94 final size:91
Alignment explanation
Indices: 52711469--52711726 Score: 263
Period size: 94 Copynumber: 2.8 Consensus size: 91
52711459 GGCACTTGTG
* *
52711469 TGTGCTAGTGTAAGACATGTCAAGGACATGCATCAACCACATTATGAGAGCTAGAGTAAGACCAT
1 TGTGCTAGTGTAAGACATGTCTAGGACATGCATCAACCACATTATGAGAGCCAGAGTAAGACCAT
*
52711534 GTCTGGGACATGGCATTGGCATTGAGACGA
66 GTCTGGGACAT-GCATCGGC--TGAGA-GA
* ** * * *
52711564 -GTGTTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-TAGTGATAGCCAGTGTAAGA-C
1 TGTGCTAGTGTAAGACATGTCTAGGACATGCATCAACCAC-ATTA-TGAGAGCCAGAGTAAGACC
52711626 ATGTCTGGGACATGCATCGGCTGAGAGA
64 ATGTCTGGGACATGCATCGGCTGAGAGA
* * * *
52711654 TGTGCTAGTGTAAGACCATGTCTGGGATATGACATCAA-CATGCATATATGAGAGCTAGTGTAAG
1 TGTGCTAGTGTAAGA-CATGTCTAGGACATG-CATCAACCA--CAT-TATGAGAGCCAGAGTAAG
*
52711718 ACAATGTCT
61 ACCATGTCT
52711727 AGGAAATGGC
Statistics
Matches: 135, Mismatches: 18, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
90 2 0.01
91 18 0.13
92 14 0.10
93 12 0.09
94 66 0.49
95 23 0.17
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (91 bp):
TGTGCTAGTGTAAGACATGTCTAGGACATGCATCAACCACATTATGAGAGCCAGAGTAAGACCAT
GTCTGGGACATGCATCGGCTGAGAGA
Found at i:52713096 original size:31 final size:31
Alignment explanation
Indices: 52713058--52713136 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
52713048 TTTAACGGTT
52713058 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
* * *
52713089 ACTGGGCCGAAGCCTTTTTATGAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
52713120 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
52713137 ATTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:52713220 original size:42 final size:42
Alignment explanation
Indices: 52713160--52713251 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
52713150 TGGCCCATAG
*
52713160 GCCCATTTCAATAACACATGAAACATCAATCAATGTATGCAA
1 GCCCATTTCAATAACACATGAAACACCAATCAATGTATGCAA
* * *
52713202 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAACACCAATCAATGTATGCAA
52713244 GCCCATTT
1 GCCCATTT
52713252 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAACACCAATCAATGTATGCAA
Found at i:52713467 original size:26 final size:25
Alignment explanation
Indices: 52713396--52713491 Score: 147
Period size: 25 Copynumber: 3.8 Consensus size: 25
52713386 CCTCTTTAAT
52713396 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
* *
52713421 AACTAGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
52713446 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCA-AAGCCCTTTTCAGTA
*
52713472 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
52713492 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 41 0.64
26 23 0.36
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGTA
Found at i:52713467 original size:51 final size:50
Alignment explanation
Indices: 52713396--52713491 Score: 156
Period size: 51 Copynumber: 1.9 Consensus size: 50
52713386 CCTCTTTAAT
52713396 AACTGGGGCAAAGCCCTTTTCAGTAAACTAGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAGTAAACTAGGGCAAAGCCCTTTTCAATA
* * *
52713446 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCAGTAAACTAGGGCAAAGCCCTTTT
52713492 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 10 0.24
51 32 0.76
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCAGTAAACTAGGGCAAAGCCCTTTTCAATA
Found at i:52714363 original size:27 final size:27
Alignment explanation
Indices: 52714301--52714374 Score: 105
Period size: 27 Copynumber: 2.7 Consensus size: 27
52714291 GGGCATATTC
*
52714301 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTATAGGGGCTTTACG
52714328 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTATAGGGGCTTTACG
**
52714355 GTCTTTTTA-CCTAATAGGGG
1 GTCACTTTACCCT-ATAGGGG
52714375 TATTTTAGTC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
GTCACTTTACCCTATAGGGGCTTTACG
Found at i:52714449 original size:27 final size:27
Alignment explanation
Indices: 52714396--52714728 Score: 233
Period size: 27 Copynumber: 12.3 Consensus size: 27
52714386 TTTCACCCTA
* * * *
52714396 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
52714423 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
52714450 AAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
52714479 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
52714506 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
52714533 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
52714559 CTAGTGGAATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
52714587 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
52714614 CAAGGGTATTTTAGCAATTTTATAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
52714641 CAA-GGTATTTTGGTAATTTTAGT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
52714667 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
52714694 CAAGGGTATTTTAGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
52714721 CGAGGGTA
1 CAAGGGTA
52714729 AAACAGTAAT
Statistics
Matches: 242, Mismatches: 55, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
26 23 0.10
27 191 0.79
28 16 0.07
29 12 0.05
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:52714724 original size:54 final size:54
Alignment explanation
Indices: 52714398--52714782 Score: 224
Period size: 54 Copynumber: 7.1 Consensus size: 54
52714388 TCACCCTACA
* * * * * * *
52714398 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAA-CAA
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATC-G
* * * * * * *
52714452 ATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAAT-T
1 AGGGTATTT-TGGTAA-TTTTATAAA-CCAAGGGTATTTTAGTAATTTTATAAATCG
* *** ** * * *
52714507 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CT
1 A-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * * * * *
52714561 AGTGGAATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
1 AG-GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * *
52714616 AGGGTATTTTAGCAATTTTATAGACCAA-GGTATTTTGGTAATTTTAGT-GATCG
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTA-TAAATCG
*
52714669 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
***** * * * *** *
52714723 AGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
52714777 AGGGTA
1 AGGGTA
52714783 AAACGATAAT
Statistics
Matches: 264, Mismatches: 55, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
53 46 0.17
54 164 0.62
55 20 0.08
56 34 0.13
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAATCG
Found at i:52714783 original size:54 final size:53
Alignment explanation
Indices: 52714680--52714812 Score: 176
Period size: 54 Copynumber: 2.5 Consensus size: 53
52714670 GGGTATTTTG
* *** *
52714680 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAAC
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
*
52714733 AGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 -GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
**
52714787 GATAATTTTGTAAATTGAGGGTAAAA
1 G-TAATTTTGTAAATCAAGGGTAAAA
52714813 CGATAATTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 68 0.99
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.32
Consensus pattern (53 bp):
GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
Found at i:52714814 original size:27 final size:28
Alignment explanation
Indices: 52714706--52714828 Score: 146
Period size: 27 Copynumber: 4.5 Consensus size: 28
52714696 AGGGTATTTT
* *
52714706 AGTAATTTTATAAATCGAGGGTAAAAC-
1 AGTAATTCTGTAAATCGAGGGTAAAACG
* *
52714733 AGTAATTCTGTAAATCAAGGGTAAAA-T
1 AGTAATTCTGTAAATCGAGGGTAAAACG
*
52714760 AGTAATTCTATAAATCGAGGGTAAAACG
1 AGTAATTCTGTAAATCGAGGGTAAAACG
* *
52714788 A-TAATTTTGTAAATTGAGGGTAAAACG
1 AGTAATTCTGTAAATCGAGGGTAAAACG
*
52714815 A-TAATTATGTAAAT
1 AGTAATTCTGTAAAT
52714829 AGGGGGTACT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.31
Consensus pattern (28 bp):
AGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:52718478 original size:40 final size:39
Alignment explanation
Indices: 52718420--52718612 Score: 131
Period size: 40 Copynumber: 4.8 Consensus size: 39
52718410 GGATATAGCG
* * * *
52718420 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
52718460 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * * *
52718500 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGATTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCG-GTTTAGTA
* * * *
52718540 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
52718580 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
52718613 ACACCATTCG
Statistics
Matches: 121, Mismatches: 22, Indels: 19
0.75 0.14 0.12
Matches are distributed among these distances:
39 4 0.03
40 88 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:52718546 original size:80 final size:81
Alignment explanation
Indices: 52718462--52718611 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 81
52718452 TTATAGTGAT
* * * *
52718462 TCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTT
1 TCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTT
52718525 AACCCGATTTTGGTAAC
65 AACCCGATTTTGGTAAC
* * *
52718542 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTTA
*
52718607 GCCCG
66 ACCCG
52718612 GACACCATTC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 34 0.57
81 26 0.43
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTTA
ACCCGATTTTGGTAAC
Found at i:52718589 original size:41 final size:39
Alignment explanation
Indices: 52718462--52718613 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
52718452 TTATAGTGAT
* *
52718462 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * *
52718502 TCGCACGAATGCCTTCGGGACTTAACCC-GATTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGA-TTTAGTAAC
* *
52718542 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
52718582 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
52718614 CACCATTCGA
Statistics
Matches: 94, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
39 2 0.02
40 63 0.67
41 29 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:52726512 original size:40 final size:39
Alignment explanation
Indices: 52726454--52726646 Score: 140
Period size: 40 Copynumber: 4.8 Consensus size: 39
52726444 GGATATAGCG
* * * *
52726454 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
52726494 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
52726534 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
* * * *
52726574 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
52726614 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
52726647 ACACCATTCG
Statistics
Matches: 123, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.03
40 90 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:52726566 original size:80 final size:80
Alignment explanation
Indices: 52726454--52726646 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
52726444 GGATATAGCG
* * * * * * *
52726454 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
52726519 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
52726534 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
* *
52726599 GACCCGGATTTAGTC
66 GACCCGGATTTAATA
* * *
52726614 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
52726647 ACACCATTCG
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 67 0.71
81 27 0.29
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:52726635 original size:41 final size:39
Alignment explanation
Indices: 52726496--52726647 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
52726486 TTATAGTGAT
* *
52726496 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
52726536 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* *
52726576 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
52726616 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
52726648 CACCATTCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
40 67 0.71
41 27 0.29
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:52731245 original size:40 final size:40
Alignment explanation
Indices: 52731190--52731407 Score: 318
Period size: 40 Copynumber: 5.5 Consensus size: 40
52731180 CGGATGATAA
* *
52731190 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
52731230 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
52731270 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
52731310 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
52731350 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
52731390 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
52731408 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 151 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:52739262 original size:40 final size:40
Alignment explanation
Indices: 52739207--52739422 Score: 323
Period size: 40 Copynumber: 5.5 Consensus size: 40
52739197 CGGATGATAA
* *
52739207 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
52739247 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
52739286 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
52739326 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
52739366 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
52739406 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
52739423 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 55 0.33
40 110 0.67
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:52739338 original size:79 final size:80
Alignment explanation
Indices: 52739207--52739422 Score: 323
Period size: 79 Copynumber: 2.7 Consensus size: 80
52739197 CGGATGATAA
* *
52739207 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTG
**
52739271 TGCGAGTTACTAT-TC
65 TGCGAACTACTATATC
52739286 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
52739351 GCGAACTACTATATC
66 GCGAACTACTATATC
* * *
52739366 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
52739423 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
79 87 0.69
80 40 0.31
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAACTACTATATC
Found at i:52739418 original size:119 final size:119
Alignment explanation
Indices: 52739207--52739422 Score: 323
Period size: 119 Copynumber: 1.8 Consensus size: 119
52739197 CGGATGATAA
* * *
52739207 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGA
*
52739272 GCGAGTTACTATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
66 GCGAGTTACTATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATATC
52739326 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-AACTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTT
*
52739389 GAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
64 GAGCGAGTTA-CTAT-TCCGGGCTAAATCCCGAAGG
52739423 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
118 4 0.05
119 79 0.90
120 5 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (119 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTTACTATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:52741186 original size:44 final size:44
Alignment explanation
Indices: 52741086--52741203 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 44
52741076 AGCTCGTACA
* * *
52741086 ATGCCAACGTCCCAGACATGGTCTTACATG-TAAACAAATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGAAAAACAAATATCG
* *
52741129 ATGCC-ACTATCCCAGACAGGGTCTTACACGAAAAACAGAA-GTCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGAAAAACA-AATATCG
*
52741173 ATGCCAAGGTCCCAGAC-GTGGTCTTACACGA
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGA
52741204 TAACATATCG
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.03
43 25 0.40
44 33 0.52
45 3 0.05
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.19
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGAAAAACAAATATCG
Found at i:52750799 original size:39 final size:39
Alignment explanation
Indices: 52750718--52750877 Score: 248
Period size: 39 Copynumber: 4.1 Consensus size: 39
52750708 TATGGTAACC
** *
52750718 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
52750758 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
52750797 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
52750836 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
52750875 CGC
1 CGC
52750878 GCATTCATTC
Statistics
Matches: 112, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 96 0.86
40 16 0.14
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:52758773 original size:39 final size:39
Alignment explanation
Indices: 52758692--52758854 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
52758682 TATGGTAACC
** *
52758692 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
52758732 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
52758771 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
52758810 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
52758849 CGCACA
1 CGCACA
52758855 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:52759478 original size:39 final size:39
Alignment explanation
Indices: 52759435--52759547 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
52759425 GTGCGAATTG
52759435 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
52759474 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* **
52759513 TGATATCCGGGTTAAGTCCCGAAGGCGTTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
52759548 GGTTACCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 52 0.76
40 16 0.24
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:52759563 original size:79 final size:79
Alignment explanation
Indices: 52759424--52759577 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
52759414 TGTGAATGAA
** *
52759424 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
52759489 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * ** * *
52759502 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
52759567 TGTCCCGAAGG
65 AGTCCCGAAGG
52759578 TGTTTTGAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 25 0.39
79 31 0.48
80 8 0.12
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:52763158 original size:44 final size:43
Alignment explanation
Indices: 52763014--52763171 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 43
52763004 AGCTCGTACA
* *
52763014 ATGCCAACATCCCAGACGTGGTCTTACATGT--AGTCAAATATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAAGTC-AA-ATCG
* * * *
52763057 ATGCC-ACTGTCCCAGACAAGGTCTTAGAC--AAAATCAAATACG
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGTAAAGTCAAAT-CG
* **
52763099 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATGTCAAATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAA-GTCAAATCG
*
52763143 ATGCCAACATCCCAGACGTGGTCTTACAC
1 ATGCCAACATCCCAGACATGGTCTTACAC
52763172 AAAATCACAT
Statistics
Matches: 93, Mismatches: 14, Indels: 15
0.76 0.11 0.12
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 25 0.27
44 30 0.32
45 6 0.06
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACATCCCAGACATGGTCTTACACGTAAAGTCAAATCG
Found at i:52773833 original size:38 final size:38
Alignment explanation
Indices: 52773787--52773875 Score: 110
Period size: 38 Copynumber: 2.4 Consensus size: 38
52773777 CCCAAATAGC
*
52773787 GCTA-GCACAAAGCCTGAATAACACCAACACAAAGAC-T
1 GCTAGGCACAAAGCCCGAATAACACCAACACAAAG-CTT
* * *
52773824 GCTAGGCACAGAGCCCGAATAACACCGACACGAAGCTT
1 GCTAGGCACAAAGCCCGAATAACACCAACACAAAGCTT
*
52773862 GTTAGGCACAAAGC
1 GCTAGGCACAAAGC
52773876 TTGCTAGGCA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
37 5 0.11
38 39 0.89
ACGTcount: A:0.39, C:0.29, G:0.20, T:0.11
Consensus pattern (38 bp):
GCTAGGCACAAAGCCCGAATAACACCAACACAAAGCTT
Found at i:52773868 original size:98 final size:98
Alignment explanation
Indices: 52773692--52773871 Score: 234
Period size: 98 Copynumber: 1.8 Consensus size: 98
52773682 AAGTCTGGTA
** * * * * ** *
52773692 AGCACAAAGCCTGAATAACACCGGCACAAAGCCTGCAAGGCATAGAACCCGAATTACACTGGTAT
1 AGCACAAAGCCTGAATAACACCAACACAAAGACTGCAAGGCACAGAACCCGAATAACACCGACAC
52773757 AAAGCCTGCTAGGCACAGAGCCCAAATAGCGCT
66 AAAGCCTGCTAGGCACAGAGCCCAAATAGCGCT
* *
52773790 AGCACAAAGCCTGAATAACACCAACACAAAGACTGCTAGGCACAGAGCCCGAATAACACCGACAC
1 AGCACAAAGCCTGAATAACACCAACACAAAGACTGCAAGGCACAGAACCCGAATAACACCGACAC
* * *
52773855 GAAGCTTGTTAGGCACA
66 AAAGCCTGCTAGGCACA
52773872 AAGCTTGCTA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
98 68 1.00
ACGTcount: A:0.38, C:0.29, G:0.21, T:0.12
Consensus pattern (98 bp):
AGCACAAAGCCTGAATAACACCAACACAAAGACTGCAAGGCACAGAACCCGAATAACACCGACAC
AAAGCCTGCTAGGCACAGAGCCCAAATAGCGCT
Found at i:52773877 original size:16 final size:16
Alignment explanation
Indices: 52773856--52773894 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
52773846 CACCGACACG
*
52773856 AAGCTTGTTAGGCACA
1 AAGCTTGCTAGGCACA
52773872 AAGCTTGCTAGGCACA
1 AAGCTTGCTAGGCACA
*
52773888 AACCTTG
1 AAGCTTG
52773895 AATAACTCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (16 bp):
AAGCTTGCTAGGCACA
Found at i:52773898 original size:54 final size:54
Alignment explanation
Indices: 52773814--52773925 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
52773804 ATAACACCAA
* * **
52773814 CACAAAGACTGCTAGGCACAGAGCCCGAATAACACCGACACGAAGCTTGTTAGG
1 CACAAAGACTGCTAGGCACAGAACCCGAATAACACCGACACAAAGCTTACTAGG
* * *
52773868 CACAAAG-CTTGCTAGGCACA-AACCTTGAATAACTCCGGCACAAAGCTTACTAGG
1 CACAAAGAC-TGCTAGGCACAGAACC-CGAATAACACCGACACAAAGCTTACTAGG
52773922 CACA
1 CACA
52773926 GAGCCTGAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
53 4 0.08
54 45 0.92
ACGTcount: A:0.36, C:0.29, G:0.21, T:0.15
Consensus pattern (54 bp):
CACAAAGACTGCTAGGCACAGAACCCGAATAACACCGACACAAAGCTTACTAGG
Found at i:52773908 original size:38 final size:37
Alignment explanation
Indices: 52773866--52774053 Score: 178
Period size: 38 Copynumber: 4.9 Consensus size: 37
52773856 AAGCTTGTTA
* *
52773866 GGCACAAAGCTTGCTAGGCACAAACCTTGAATAACTCC
1 GGCACAAAGCCTGCTAGGCACAAACC-TGAATAACACC
* * *
52773904 GGCACAAAGCTTACTAGGCACAGAGCCTGAATAACACC
1 GGCACAAAGCCTGCTAGGCACA-AACCTGAATAACACC
* * * *
52773942 AGTACAAAGCCTGCTAGGCTCAGAGCCTGAATAACACC
1 GGCACAAAGCCTGCTAGGCACA-AACCTGAATAACACC
* * * * **
52773980 AGCACGAAGCCTGCTAAGCATAAAGTTTGAATAACACC
1 GGCACAAAGCCTGCTAGGCACAAA-CCTGAATAACACC
* *
52774018 GGCACGAAGCCTGCTAGGCACAAAGCCCGAATAACA
1 GGCACAAAGCCTGCTAGGCACAAA-CCTGAATAACA
52774054 TTATGCTTCT
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 122 0.97
39 3 0.02
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.15
Consensus pattern (37 bp):
GGCACAAAGCCTGCTAGGCACAAACCTGAATAACACC
Found at i:52773960 original size:92 final size:90
Alignment explanation
Indices: 52773787--52773960 Score: 210
Period size: 92 Copynumber: 1.9 Consensus size: 90
52773777 CCCAAATAGC
*
52773787 GCTAGCACAAAGCCTGAATAACACCAACACAAAGACTGCTAGGCACAGAGCCCGAATAACACCGA
1 GCTAGCACAAAGCCTGAATAACACCAACACAAAGACTACTAGGCACAGAGCCCGAATAACACCGA
* *
52773852 CACGAAGCTTGTTAGGCACAAAGCTT
66 CAC-AAGCCTGCTAGGCACAAAGCTT
* ** *
52773878 GCTAGGCACAAA-CCTTGAATAACTCCGGCACAAAG-CTTACTAGGCACAGAGCCTGAATAACAC
1 GCTA-GCACAAAGCC-TGAATAACACCAACACAAAGAC-TACTAGGCACAGAGCCCGAATAACAC
52773941 CAGTACA-AAGCCTGCTAGGC
63 C-G-ACACAAGCCTGCTAGGC
52773961 TCAGAGCCTG
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
91 7 0.10
92 60 0.85
93 1 0.01
94 3 0.04
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14
Consensus pattern (90 bp):
GCTAGCACAAAGCCTGAATAACACCAACACAAAGACTACTAGGCACAGAGCCCGAATAACACCGA
CACAAGCCTGCTAGGCACAAAGCTT
Found at i:52775027 original size:13 final size:13
Alignment explanation
Indices: 52775009--52775035 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
52774999 GAGGTATTCC
52775009 TGGACTCATAACT
1 TGGACTCATAACT
52775022 TGGACTCATAACT
1 TGGACTCATAACT
52775035 T
1 T
52775036 AGATCAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (13 bp):
TGGACTCATAACT
Found at i:52779604 original size:40 final size:40
Alignment explanation
Indices: 52779557--52779804 Score: 275
Period size: 40 Copynumber: 6.2 Consensus size: 40
52779547 CGGAATTTGG
*
52779557 CCGGATATAGCAACTCGCACAAATACCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
52779597 CCGGATATAGTC-ACTAGCACAATTACCTTCGGATCTTAGT
1 CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* * **
52779637 CCGGTTATAGTAACTCGCACAAATGCCTTCCAGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
52779677 CCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
52779717 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGATCTTAGT
1 CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
52779757 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
52779797 CCGGATAT
1 CCGGATAT
52779805 CATCCGAATA
Statistics
Matches: 171, Mismatches: 33, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
40 170 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:52779698 original size:80 final size:79
Alignment explanation
Indices: 52779543--52779804 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 79
52779533 AACCCAAGCA
* * * * * * *
52779543 CCTTCGGAATTTGGCCGGATATAGCAACTCGCACAAATACCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCCGGTCTTAGCCCGGTTATAGT
* * *
52779608 CACT-AGCACAATTA
66 AACTCA-CACAAATG
* * *
52779622 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCCAGTCTTAGCCCGGTTATAG
1 CCTTCGGA-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCCGGTCTTAGCCCGGTTATAG
52779687 TAACTCACACAAATG
65 TAACTCACACAAATG
* * * *
52779702 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTGCCTT-CGGATCTTAGTCCGGTTATA
1 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCCGG-TCTTAGCCCGGTTATA
*
52779766 GTAACTCGCACAAATG
64 GTAACTCACACAAATG
52779782 CCTTCGGGACTTAGCCCGGATAT
1 CCTTC-GGACTTAGCCCGGATAT
52779805 CATCCGAATA
Statistics
Matches: 159, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 10 0.06
80 145 0.91
81 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (79 bp):
CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCCGGTCTTAGCCCGGTTATAGT
AACTCACACAAATG
Found at i:52779775 original size:120 final size:120
Alignment explanation
Indices: 52779557--52779804 Score: 415
Period size: 120 Copynumber: 2.1 Consensus size: 120
52779547 CGGAATTTGG
* *
52779557 CCGGATATAGCAACTCGCACAAATACCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAATTA
1 CCGGATATAGCAACTCACACAAATACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTA
*
52779622 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCCAGTCTTAGC
66 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCCAGACTTAGC
* * * *
52779677 CCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTG
1 CCGGATATAGCAACTCACACAAATACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTA
**
52779742 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
66 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCCAGACTTAGC
52779797 CCGGATAT
1 CCGGATAT
52779805 CATCCGAATA
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (120 bp):
CCGGATATAGCAACTCACACAAATACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTA
CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCCAGACTTAGC
Found at i:52787952 original size:40 final size:40
Alignment explanation
Indices: 52787906--52788153 Score: 293
Period size: 40 Copynumber: 6.2 Consensus size: 40
52787896 CGGAATTTGG
*
52787906 CCGGATATAGCAACTCGAACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
52787946 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGATCTTAGT
1 CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
52787986 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
52788026 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
52788066 CCGGATATAGTC-ACTAGCACAATTGCCTTTGGATCTTAGT
1 CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
52788106 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
52788146 CCGGATAT
1 CCGGATAT
52788154 CATCCGAATA
Statistics
Matches: 174, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
40 173 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:52788009 original size:80 final size:79
Alignment explanation
Indices: 52787892--52788153 Score: 335
Period size: 80 Copynumber: 3.3 Consensus size: 79
52787882 AACCCAAGCA
* * * * * *
52787892 CCTTCGGAATTTGGCCGGATATAGCAACTCGAACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAGT
* *
52787957 CACTAGCACAATTG
66 AACTAGCACAAATG
* *
52787971 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAG
1 CCTTCGGA-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAG
*
52788036 TAACTTGCACAAATG
65 TAACTAGCACAAATG
* * * * * *
52788051 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTGCCTTTGGATCTTAGTCCGGTTATAG
1 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAG
*
52788116 TAACTCGCACAAATG
65 TAACTAGCACAAATG
52788131 CCTTCGGGACTTAGCCCGGATAT
1 CCTTC-GGACTTAGCCCGGATAT
52788154 CATCCGAATA
Statistics
Matches: 162, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 8 0.05
80 151 0.93
81 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (79 bp):
CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAGT
AACTAGCACAAATG
Found at i:52788076 original size:120 final size:120
Alignment explanation
Indices: 52787906--52788153 Score: 433
Period size: 120 Copynumber: 2.1 Consensus size: 120
52787896 CGGAATTTGG
*
52787906 CCGGATATAGCAACTCGAACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAATTG
1 CCGGATATAGCAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTG
*
52787971 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAGC
66 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
52788026 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTG
1 CCGGATATAGCAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTG
*
52788091 CCTTTGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
66 CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
52788146 CCGGATAT
1 CCGGATAT
52788154 CATCCGAATA
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (120 bp):
CCGGATATAGCAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTG
CCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:52792589 original size:27 final size:28
Alignment explanation
Indices: 52792533--52792602 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
52792523 AAATTTGTAC
52792533 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
52792561 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
52792588 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
52792603 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:52795238 original size:38 final size:38
Alignment explanation
Indices: 52795115--52795377 Score: 215
Period size: 38 Copynumber: 6.9 Consensus size: 38
52795105 AGCTTACTAG
* * *
52795115 GCACAAAGCCTGCTAGGCACAGAATCC-AAATAACACTA
1 GCACAAAGCCTGCTAGGCACAG-AGCCTGAATAACACCA
** * * ** ***
52795153 GCACAAAGTTTGCTAGACACAGAGCCCGAATAGTATTG
1 GCACAAAGCCTGCTAGGCACAGAGCCTGAATAACACCA
* * * *
52795191 GTACAAAGCCTGCTAGACACAGAGCCTGAAAAACACTA
1 GCACAAAGCCTGCTAGGCACAGAGCCTGAATAACACCA
** * **
52795229 GCATGAAGCCTGCTAGGCACAGAGTCTGAATAACACTG
1 GCACAAAGCCTGCTAGGCACAGAGCCTGAATAACACCA
** * *
52795267 GCACAAAGCCAACTAGGCATAGAGCCTGAATGACACCA
1 GCACAAAGCCTGCTAGGCACAGAGCCTGAATAACACCA
* * * *
52795305 GTACAAAGCCTACTAGGCACAGAGCTTGAATAATACCA
1 GCACAAAGCCTGCTAGGCACAGAGCCTGAATAACACCA
* *
52795343 GCACGAAGCCTGCTAGGCACAAAG-CTCGAATAACA
1 GCACAAAGCCTGCTAGGCACAGAGCCT-GAATAACA
52795378 TTATGTTTCT
Statistics
Matches: 177, Mismatches: 46, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
37 4 0.02
38 173 0.98
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (38 bp):
GCACAAAGCCTGCTAGGCACAGAGCCTGAATAACACCA
Found at i:52796625 original size:19 final size:19
Alignment explanation
Indices: 52796601--52796644 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
52796591 TAGAAGAATC
52796601 ATTATTAAAATTTGCTATG
1 ATTATTAAAATTTGCTATG
52796620 ATTATTAAAATTTGCTATG
1 ATTATTAAAATTTGCTATG
52796639 ATTATT
1 ATTATT
52796645 GTTGAAACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (19 bp):
ATTATTAAAATTTGCTATG
Found at i:52804469 original size:27 final size:27
Alignment explanation
Indices: 52804433--52804786 Score: 188
Period size: 27 Copynumber: 13.1 Consensus size: 27
52804423 GAATTACCGT
* * *
52804433 TTTACAAAATTATCGTTCTACCATCAA
1 TTTATAAAATTACCGTTTTACCATCAA
* *
52804460 TTTTTAAAATTACCGTTTTACCCTCAA
1 TTTATAAAATTACCGTTTTACCATCAA
* * *
52804487 TTTATAGAATTACCGTTTTACCCTCAG
1 TTTATAAAATTACCGTTTTACCATCAA
* * * * *
52804514 TTTACAGAATTACCATTTTACCCTCGA
1 TTTATAAAATTACCGTTTTACCATCAA
* * * * *
52804541 TTTACAGAATTACCATTTTACCCTCAG
1 TTTATAAAATTACCGTTTTACCATCAA
* * * * *
52804568 TTTACAGAATTACCATTTTACCCTCGA
1 TTTATAAAATTACCGTTTTACCATCAA
* * * * *
52804595 TTTACAGAATTATCGTTTTACCCTCAG
1 TTTATAAAATTACCGTTTTACCATCAA
* * * * *
52804622 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTATAAAATTACCGTTTTACCATCAA
* * ** * *
52804649 TTTACAGAATTACTATTTTACCCTCGA
1 TTTATAAAATTACCGTTTTACCATCAA
* * *
52804676 TTTGTAAAATTACCG-TTTACCCTCGA
1 TTTATAAAATTACCGTTTTACCATCAA
* * * * **
52804702 TTGATTTAAAATTACTGGTTTACCCTCGG
1 TT--TATAAAATTACCGTTTTACCATCAA
* * *
52804731 TTTACAAAATTATCGTTTTACCCTCAA
1 TTTATAAAATTACCGTTTTACCATCAA
* * * *
52804758 TTTACAGAATTACTGTTTTACCCTCAA
1 TTTATAAAATTACCGTTTTACCATCAA
52804785 TT
1 TT
52804787 GTGAAATTAC
Statistics
Matches: 281, Mismatches: 43, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 13 0.05
27 245 0.87
28 11 0.04
29 12 0.04
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TTTATAAAATTACCGTTTTACCATCAA
Found at i:52804526 original size:54 final size:54
Alignment explanation
Indices: 52804467--52804783 Score: 397
Period size: 54 Copynumber: 5.9 Consensus size: 54
52804457 CAATTTTTAA
* *
52804467 AATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
52804521 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
52804575 AATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCAGTTTACAG
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* ** *
52804629 AATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTGTA-A-
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAG
** * * * * *
52804683 AATTACCG-TTTACCCTCGATTGATTTAAAATTACTGGTTTACCCTCGGTTTACAA
1 AATTACCGTTTTACCCTCGATT--TACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
52804738 AATTATCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCA
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
52804784 ATTGTGAAAT
Statistics
Matches: 229, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
53 15 0.07
54 171 0.75
55 29 0.13
56 14 0.06
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:52804577 original size:81 final size:81
Alignment explanation
Indices: 52804467--52804782 Score: 347
Period size: 81 Copynumber: 3.9 Consensus size: 81
52804457 CAATTTTTAA
* * * *
52804467 AATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTT
1 AATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACCGTTT
52804532 TACCCTCGATTTACAG
66 TACCCTCGATTTACAG
* *
52804548 AATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTC-GATTTACAGAATTATCGTT
1 AATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACCGTT
52804612 TTACCCTC-AGTTTACAG
65 TTACCCTCGA-TTTACAG
* * *
52804629 AATTACTGTTTTACCCTC-GATTTACAGAATTACTATTTTACCCTCGATTTGTA-A-AATTACCG
1 AATTACCGTTTTACCCTCAG-TTTACAGAATTACCATTTTACCCTC-AGTT-TACAGAATTACCG
** *
52804691 -TTTACCCTCGATTGATTTAA
63 TTTTACCCTCGATT--TACAG
* * * * * * * *
52804711 AATTACTGGTTTACCCTCGGTTTACAAAATTATCGTTTTACCCTCAATTTACAGAATTACTGTTT
1 AATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACCGTTT
52804776 TACCCTC
66 TACCCTC
52804783 AATTGTGAAA
Statistics
Matches: 201, Mismatches: 21, Indels: 24
0.82 0.09 0.10
Matches are distributed among these distances:
80 16 0.08
81 123 0.61
82 50 0.25
83 12 0.06
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
AATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACCGTTT
TACCCTCGATTTACAG
Found at i:52804727 original size:55 final size:55
Alignment explanation
Indices: 52804433--52804796 Score: 303
Period size: 54 Copynumber: 6.7 Consensus size: 55
52804423 GAATTACCGT
* * * * *
52804433 TTTACAAAATTA-TCGTTCTACCATCAATTTTTAAAATTACCGTTTTACCCTCA-A
1 TTTACAGAATTACT-GTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCAGA
* * * *
52804487 TTTATAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTACCATTTTACCCTC-GA
1 TTTACAGAATTACTGTTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCTCAGA
** * *
52804541 TTTACAGAATTACCATTTTACCCTC-AGTT-TACAGAATTACCATTTTACCCTC-GA
1 TTTACAGAATTACTGTTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCTCAGA
* *
52804595 TTTACAGAATTA-TCGTTTTACCCTC-AGTT-TACAGAATTACTGTTTTACCCTC-GA
1 TTTACAGAATTACT-GTTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCTCAGA
*
52804649 TTTACAGAATTACTATTTTACCCTCGATTTGTAAAATTACCG-TTTACCCTCGATTGA
1 TTTACAGAATTACTGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTC-A--GA
* * ** *
52804706 TTTA-A-AATTACTGGTTTACCCTCGGTTTACAAAATTATCGTTTTACCCTCA-A
1 TTTACAGAATTACTGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCAGA
* *
52804758 TTTACAGAATTACTGTTTTACCCTC-AATTGTGAAATTAC
1 TTTACAGAATTACTGTTTTACCCTCGATTTGTAAAATTAC
52804797 TAAAATACCC
Statistics
Matches: 266, Mismatches: 29, Indels: 31
0.82 0.09 0.10
Matches are distributed among these distances:
52 7 0.03
53 22 0.08
54 184 0.69
55 35 0.13
56 12 0.05
57 6 0.02
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (55 bp):
TTTACAGAATTACTGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCAGA
Found at i:52804823 original size:27 final size:27
Alignment explanation
Indices: 52804791--52804959 Score: 196
Period size: 27 Copynumber: 6.2 Consensus size: 27
52804781 TCAATTGTGA
*
52804791 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
52804818 AATTACTGAAATACCCCTATAAGGGTAG
1 AATTACTGAAATACCCTTGT-AGGGTAG
* *
52804846 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
52804873 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * *
52804900 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * * *
52804927 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
52804954 AATTAC
1 AATTAC
52804960 CATTTTGCCC
Statistics
Matches: 123, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.79
28 25 0.20
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:52804833 original size:136 final size:136
Alignment explanation
Indices: 52804465--52804833 Score: 335
Period size: 135 Copynumber: 2.7 Consensus size: 136
52804455 ATCAATTTTT
* * * * * *
52804465 AAAATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCAT
1 AAAATTATCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACTAA
** * * ***
52804530 TTTACCCTCGAT--TTACAGAATTACC-ATTTTACCCTC-A--G-TTTACAGAATTACCATTTTA
66 AATACCCTCGATGGGTA-A-AATTACCGA--ATACCCTCGATTGATTTA-A-AATTACTGGTTTA
52804588 CCCTCGATTTAC
125 CCCTCGATTTAC
* * * *
52804600 AGAATTATCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTAT
1 AAAATTATCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACTAA
** ** **
52804665 TTTACCCTCGATTTGTAAAATTACCGTTTACCCTCGATTGATTTAAAATTACTGGTTTACCCTCG
66 AATACCCTCGATGGGTAAAATTACCGAATACCCTCGATTGATTTAAAATTACTGGTTTACCCTCG
*
52804730 GTTTAC
131 ATTTAC
*
52804736 AAAATTATCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCAATTGT-GA-AATTACTA
1 AAAATTATCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCAATT-TACAGAATTACTA
* * *
52804799 AAATACCCTTG-TAGGGTAGAATTACTGAAATACCC
65 AAATACCCTCGAT-GGGTAAAATTACCG-AATACCC
52804834 CTATAAGGGT
Statistics
Matches: 196, Mismatches: 28, Indels: 19
0.81 0.12 0.08
Matches are distributed among these distances:
134 9 0.05
135 102 0.52
136 76 0.39
137 5 0.03
138 4 0.02
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (136 bp):
AAAATTATCGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACTAA
AATACCCTCGATGGGTAAAATTACCGAATACCCTCGATTGATTTAAAATTACTGGTTTACCCTCG
ATTTAC
Found at i:52805197 original size:27 final size:26
Alignment explanation
Indices: 52805159--52805241 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
52805149 CGGAGGAAGC
*
52805159 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
52805186 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
52805212 GTATCTAGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
52805239 GTT
1 GTT
52805242 GACCGATCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:52805571 original size:27 final size:27
Alignment explanation
Indices: 52805549--52805622 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
52805539 TAGGTGGGTT
*
52805549 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
52805576 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
52805603 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
52805623 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:52805748 original size:6 final size:6
Alignment explanation
Indices: 52805739--52805868 Score: 96
Period size: 6 Copynumber: 21.8 Consensus size: 6
52805729 TTGCATTCAC
* *
52805739 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
52805787 -TACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTA ATAAT-TG A-TCTG
1 ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT--TCTG ATTCTG
52805834 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
52805869 CATTTTGGTT
Statistics
Matches: 100, Mismatches: 9, Indels: 30
0.72 0.06 0.22
Matches are distributed among these distances:
4 4 0.04
5 9 0.09
6 78 0.78
7 7 0.07
8 1 0.01
9 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:52805822 original size:30 final size:30
Alignment explanation
Indices: 52805739--52805868 Score: 171
Period size: 30 Copynumber: 4.4 Consensus size: 30
52805729 TTGCATTCAC
*
52805739 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
52805770 ATTCTGATTCTGATTC--TTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
52805798 ATTCTGATTCTGATTCTGTTACTAATAAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT--TCTG
*
52805829 A-TCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
52805858 ATTCTGATTCT
1 ATTCTGATTCT
52805869 CATTTTGGTT
Statistics
Matches: 91, Mismatches: 2, Indels: 13
0.86 0.02 0.12
Matches are distributed among these distances:
28 24 0.26
29 6 0.07
30 40 0.44
31 21 0.23
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:52806588 original size:47 final size:47
Alignment explanation
Indices: 52806493--52806729 Score: 406
Period size: 47 Copynumber: 5.1 Consensus size: 47
52806483 CAAGNATGAA
52806493 TGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA--AATG
1 TGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACGAATG
52806538 TGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACGAATG
1 TGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACGAATG
*
52806585 TGAATGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGACGAATG
1 TGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACGAATG
* *
52806632 TGAATGTGTATATATGTGATACGGCCGAATGGCCAATGTGATGAATG
1 TGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACGAATG
* * *
52806679 TGAATGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGGATG
1 TGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACGAATG
52806726 TGAA
1 TGAA
52806730 AGTATAAATG
Statistics
Matches: 183, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 41 0.22
47 142 0.78
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.29
Consensus pattern (47 bp):
TGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACGAATG
Found at i:52809349 original size:40 final size:40
Alignment explanation
Indices: 52809287--52809541 Score: 395
Period size: 40 Copynumber: 6.4 Consensus size: 40
52809277 AGGTCTTGAC
*
52809287 GATG-ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
52809326 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
52809366 GATGTATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
52809406 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
52809446 GATATATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
52809486 GATGTATCCGGGCTAAGTTCCGAAGAGTATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
52809526 GATATATCCGTGCTAA
1 GATGTATCCGGGCTAA
52809542 ACCCCAAAGA
Statistics
Matches: 196, Mismatches: 19, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 4 0.02
40 192 0.98
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:52809424 original size:80 final size:80
Alignment explanation
Indices: 52809291--52809546 Score: 449
Period size: 80 Copynumber: 3.2 Consensus size: 80
52809281 CTTGACGATG
* * *
52809291 ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
*
52809356 TCGTGCTAGTGATGT
66 TCGTGCTAGTGATAT
52809371 ATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
52809436 TCGTGCTAGTGATAT
66 TCGTGCTAGTGATAT
*
52809451 ATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGTAT
1 ATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
52809516 TCGTGCTAGTGATAT
66 TCGTGCTAGTGATAT
* *
52809531 ATCCGTGCTAAACCCC
1 ATCCGGGCTAAGCCCC
52809547 AAAGAGCAAT
Statistics
Matches: 169, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 169 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
TCGTGCTAGTGATAT
Found at i:52809776 original size:24 final size:25
Alignment explanation
Indices: 52809731--52809780 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
52809721 GTGTAATAAC
52809731 GAATGAATAAGAGCACTATGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
* *
52809756 GAATGATTAAG-GCACTGTGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
52809780 G
1 G
52809781 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTGTGT
Found at i:52813257 original size:22 final size:22
Alignment explanation
Indices: 52813231--52813352 Score: 86
Period size: 22 Copynumber: 5.3 Consensus size: 22
52813221 GTGAATATAT
52813231 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
52813253 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
52813277 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * **
52813300 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
52813324 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
52813347 ATGTGA
1 ATGTGA
52813353 CGAATGTGAA
Statistics
Matches: 74, Mismatches: 16, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
22 30 0.41
23 10 0.14
24 10 0.14
25 24 0.32
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:52813295 original size:47 final size:47
Alignment explanation
Indices: 52813185--52813475 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
52813175 ATAAGATATG
* * *
52813185 TATATGTGGTAAAGCCGAATGGCCAATGTGACGAATGTGAA----TA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
52813228 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
52813275 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
52813322 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
52813369 TATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
* * * *
52813416 TATATGTGATAAGGCCAAATGGCCAATGTAATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
*
52813463 TAAATGTGATAAG
1 TATATGTGATAAG
52813476 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
43 38 0.16
47 194 0.84
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
Found at i:52818146 original size:15 final size:15
Alignment explanation
Indices: 52818126--52818155 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
52818116 TTTGCCCCTA
52818126 ACCTTTCACATTATT
1 ACCTTTCACATTATT
52818141 ACCTTTCACATTATT
1 ACCTTTCACATTATT
52818156 TACGATTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.47
Consensus pattern (15 bp):
ACCTTTCACATTATT
Found at i:52824693 original size:27 final size:28
Alignment explanation
Indices: 52824637--52824706 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
52824627 AAATTTGTAC
52824637 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
52824665 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
52824692 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
52824707 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:52824717 original size:27 final size:27
Alignment explanation
Indices: 52824637--52824718 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
52824627 AAATTTGTAC
* *
52824637 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
52824665 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
52824692 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
52824719 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:52832521 original size:27 final size:28
Alignment explanation
Indices: 52832465--52832534 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
52832455 AAATTTGTAC
52832465 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
52832493 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
52832520 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
52832535 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:52832545 original size:27 final size:27
Alignment explanation
Indices: 52832465--52832546 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
52832455 AAATTTGTAC
* *
52832465 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
52832493 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
52832520 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
52832547 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:52834878 original size:23 final size:23
Alignment explanation
Indices: 52834844--52834899 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
52834834 AGTTAAGCCT
52834844 CACACGCCCGAGTAGAGGCAGTG
1 CACACGCCCGAGTAGAGGCAGTG
*
52834867 CACACGCTCGAGTAGAGGCAGTG
1 CACACGCCCGAGTAGAGGCAGTG
52834890 CACACGCCCG
1 CACACGCCCG
52834900 TGTCCCCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.25, C:0.34, G:0.32, T:0.09
Consensus pattern (23 bp):
CACACGCCCGAGTAGAGGCAGTG
Found at i:52852599 original size:54 final size:54
Alignment explanation
Indices: 52852534--52852640 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
52852524 CTAGCAAGTT
* *
52852534 AGGGCACAACACCTCGAATCTCAGAAAGTAAACATTTTATTCAAAACTCGTATC
1 AGGGCACAACACCTCGAATCGCAGAAAGCAAACATTTTATTCAAAACTCGTATC
* * *
52852588 AGGGCATAACACCTCGAATCGCAGAGAGCAAGCATTTTATTCAAAACTCGTAT
1 AGGGCACAACACCTCGAATCGCAGAAAGCAAACATTTTATTCAAAACTCGTAT
52852641 TGCGATTTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.23
Consensus pattern (54 bp):
AGGGCACAACACCTCGAATCGCAGAAAGCAAACATTTTATTCAAAACTCGTATC
Found at i:52853212 original size:3 final size:3
Alignment explanation
Indices: 52853200--52853350 Score: 132
Period size: 3 Copynumber: 51.7 Consensus size: 3
52853190 ATAGGTAAAA
*
52853200 AAT AAT -AT AAT AAT AAT -AT AAT AGT AAT AAT AAT -AT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
52853245 AGT AGT AAT AGT AAT AA- AGAT AAT AGT TAT AAA AAT AAT ACT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
52853290 AGT AAT AAT AAT AAT AAG AAT AAT AAT -AT ATT TAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
52853337 AGT AAA AAT AAT AA
1 AAT AAT AAT AAT AA
52853351 GATTAACTAA
Statistics
Matches: 116, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
2 9 0.08
3 106 0.91
4 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:52854923 original size:137 final size:138
Alignment explanation
Indices: 52854701--52855010 Score: 487
Period size: 137 Copynumber: 2.3 Consensus size: 138
52854691 GTTTGTAGTT
* * * *
52854701 TTCAGCCTACTCCACTACAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTC
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAGTTTGCTATGATCTGCTCTACTGCAACTTC
*
52854766 AGAAAGATAAGATCTGTTTATTTATAGCTTCAATCTGTTCCA-TGCAACGTTAGGGAAATAAGAT
66 AGAAAGATAAGATCTATTTATTTATAGCTTCAATCTGTTCCACTGCAACGTTAGGGAAATAAGAT
*
52854830 TCGCTATT
131 TCGCTATC
* * * *
52854838 TTTAGTGTGCTCCACTGCAACTTCAGGGAGATAAAGTTTGTTTTGATCTGCTCTACTGCAACTTC
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAGTTTGCTATGATCTGCTCTACTGCAACTTC
* *
52854903 AGAGAGATAAGATCTATTTATTTATAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGAT
66 AGAAAGATAAGATCTATTTATTTATAGCTTCAATCTGTTCCACTGCAACGTTAGGGAAATAAGAT
*
52854968 TTGCTATC
131 TCGCTATC
*
52854976 TTCAGTCTGCTTCACTGCAACTTCAGGGAGATAAA
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAA
52855011 ACTAGTGACT
Statistics
Matches: 156, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
137 97 0.62
138 59 0.38
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (138 bp):
TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAGTTTGCTATGATCTGCTCTACTGCAACTTC
AGAAAGATAAGATCTATTTATTTATAGCTTCAATCTGTTCCACTGCAACGTTAGGGAAATAAGAT
TCGCTATC
Found at i:52855158 original size:181 final size:181
Alignment explanation
Indices: 52854845--52855371 Score: 829
Period size: 181 Copynumber: 2.9 Consensus size: 181
52854835 ATTTTTAGTG
* *
52854845 TGCTCCACTGCAACTTCAGGGAGATAAAGTTTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTACTCTACTGCAACTTCAGAGAGA
* * *
52854910 TAAGATCTATTTATTTATAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTAT
66 TAAGATCT-GTGATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTAT
*
52854975 CTTCAGTCTGCTTCACTGCAACTTCAGGGAGATAAAACTAGTGACTTCAACC
130 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGTGACTTCAACC
* * * * *
52855027 TGCTCCACTACAACTTCAAGGATATAAGGTTTGCTTTGATCTACTCTACTGCAACTTTAGAGAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTACTCTACTGCAACTTCAGAGAGA
*
52855092 TAAGATCTGTGATTTATAACTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATC
66 TAAGATCTGTGATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATC
* *
52855157 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACC
131 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGTGACTTCAACC
* * * * *
52855208 TGCTCCACCGCAACTTTAGGGGGATAAGCTTTGTTTTGATCTACTTTACTGCAACTTCAGAGAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTACTCTACTGCAACTTCAGAGAGA
* * *
52855273 TAAGATCTGAGATTTATAGCTTCAATCTGTTCCACTGTAACTTCAGGGAATTAAGATTTGCTATC
66 TAAGATCTGTGATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATC
* *
52855338 TTCAGTCTGCTCCAATGCAACTTCAAGGAGATAA
131 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAA
52855372 GGTTTGATTT
Statistics
Matches: 315, Mismatches: 30, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
181 249 0.79
182 66 0.21
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (181 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTACTCTACTGCAACTTCAGAGAGA
TAAGATCTGTGATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATC
TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGTGACTTCAACC
Found at i:52855221 original size:44 final size:44
Alignment explanation
Indices: 52854930--52855512 Score: 292
Period size: 45 Copynumber: 12.9 Consensus size: 44
52854920 TTATTTATAG
* * * *
52854930 CTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
* * * *
52854974 TCTTCAGTCTGCTTCACTGCAACTTCAGGGAGATAAAACTAG-TGA
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT-A
* * * * **
52855019 CTTCAACCTGCTCCACTACAACTTCAAGGATATAAGGTTTGCT-
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
* * * * * *
52855062 -TT-GATCTACTCTACTGCAACTTTAGAGAGATAAGATCTGTGATTTATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TG----CT-A
* * *
52855111 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
*
52855155 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TGA
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT-A
* * * *
52855200 CTTCAACCTGCTCCACCGCAACTTTAGGGGGATAAG-CTTTG-T-
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC-TTGCTA
** * ** * **
52855242 -TTTGATCTACTTTACTGCAACTTCAGAGAGATAAGATCTGAGATTTATA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-C-----TTGCTA
* * *
52855291 GCTTCAATCTGTTCCACTGTAACTTCAGGGA-ATTAAGATTTGCTA
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGA-TAAGACTTGCTA
* * * **
52855336 TCTTCAGTCTGCTCCAATGCAACTTCAAGGAGATAAGGTTTG--A
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
** * * *
52855379 -TTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TG----CTA
** * * * *
52855428 GCTTCAATCTATTCCATTACAACTTCAGGGAAATAAGATTTGCTA
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
* * *
52855473 TCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACT
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT
52855513 AGTGACTTCA
Statistics
Matches: 397, Mismatches: 104, Indels: 74
0.69 0.18 0.13
Matches are distributed among these distances:
41 76 0.19
42 4 0.01
43 7 0.02
44 69 0.17
45 147 0.37
46 1 0.00
47 3 0.01
48 1 0.00
49 5 0.01
50 5 0.01
51 79 0.20
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
Found at i:52855371 original size:137 final size:136
Alignment explanation
Indices: 52855156--52855509 Score: 469
Period size: 137 Copynumber: 2.6 Consensus size: 136
52855146 GATTTGCTAT
* * * ** *
52855156 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TGA-CTTCAACCTGCTCCACCGC
1 CTTCAATCTGTTCCACTGCAACTTCAGGGA-ATAAGATTTGCT-ATCTTCAGTCTGCTCCACTGC
* * * *
52855219 AACTTTAGGGGGATAAGCTTTGTTTTGATCTACTTTACTGCAACTTCAGAGAGATAAGATCTGAG
64 AACTTCAGGGAGATAAGCTTTGATTTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGAG
52855284 ATTTATAG
129 ATTTATAG
* *
52855292 CTTCAATCTGTTCCACTGTAACTTCAGGGAATTAAGATTTGCTATCTTCAGTCTGCTCCAATGCA
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAA-TAAGATTTGCTATCTTCAGTCTGCTCCACTGCA
* * * *
52855357 ACTTCAAGGAGATAAGGTTTGATTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGA
65 ACTTCAGGGAGATAAGCTTTGATTTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGAGA
52855422 TTTATAG
130 TTTATAG
* * * * *
52855429 CTTCAATCTATTCCATTACAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTACA
1 CTTCAATCTGTTCCACTGCAACTTCAGGG-AATAAGATTTGCTATCTTCAGTCTGCTCCACTGCA
52855494 ACTTCAGGGAGATAAG
65 ACTTCAGGGAGATAAG
52855510 ACTAGTGACT
Statistics
Matches: 190, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
135 1 0.01
136 36 0.19
137 151 0.79
138 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (136 bp):
CTTCAATCTGTTCCACTGCAACTTCAGGGAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAA
CTTCAGGGAGATAAGCTTTGATTTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGAGAT
TTATAG
Found at i:52855395 original size:318 final size:318
Alignment explanation
Indices: 52854701--52855525 Score: 960
Period size: 318 Copynumber: 2.6 Consensus size: 318
52854691 GTTTGTAGTT
* * * * *
52854701 TTCAGCCTACTCCACTACAACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTC
1 TTCAACCTGCTCCAATACAACTTCAAGGAGATAAGGTTTGCTTTGATCTGCTCTACTGCAACTTC
* *
52854766 AGAAAGATAAGATCTGTTTATTTATAGCTTCAATCTGTTCCATGCAACGTT-AGGGAAATAAGAT
66 AGAGAGATAAGATCTG-TGATTTATAGCTTCAATCTGTTCCATGCAAC-TTCAGGGAAATAAGAT
* * * * * * ** * *
52854830 TCGCTATTTTTAGTGTGCTCCACTGCAACTTCAGGGAGATAA-AGTT-TG-TTTTGATCTGCTCT
129 TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCC
* * *
52854892 ACTGCAACTTCAGAGAGATAAGATCTATTTATTTATAGCTTCAATCTGTTCCACTGCAACTTTAG
194 ACCGCAACTTCAGAGAGATAAGA-C-ATTTATTTATAGCATCAATCTGTT-CACTGCAACTTCAG
* * *
52854957 GGAAATAAGATTTGCTATCTTCAGTCTGCTTCACTGCAACTTCAGGGAGATAAAACTAGTGAC
256 AGAAATAAGATTAGCTATCTTCAATCTGCTTCACTGCAACTTCAGGGAGATAAAACTAGTGAC
* * * *
52855020 TTCAACCTGCTCCACTACAACTTCAAGGATATAAGGTTTGCTTTGATCTACTCTACTGCAACTTT
1 TTCAACCTGCTCCAATACAACTTCAAGGAGATAAGGTTTGCTTTGATCTGCTCTACTGCAACTTC
*
52855085 AGAGAGATAAGATCTGTGATTTATAACTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATT
66 AGAGAGATAAGATCTGTGATTTATAGCTTCAATCTGTTCCA-TGCAACTTCAGGGAAATAAGATT
52855150 TGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCCA
130 TGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCCA
* * * * * *
52855215 CCGCAACTTTAGGGGGATAAG-C-TTTGTTT-T-G-ATCTA-CT-TT-ACTGCAACTTCAGAGAG
195 CCGCAACTTCAGAGAGATAAGACATTTATTTATAGCATCAATCTGTTCACTGCAACTTCAGAGAA
* * * * *
52855272 ATAAGATCTGAGATTTATAGCTTCAATCTG-TTCCACTGTAACTTCAGGGA-ATTAAGATTTGCT
260 ATAAGAT-T-AG--CTAT--CTTCAATCTGCTT-CACTGCAACTTCAGGGAGA-TAAAACTAG-T
52855335 -ATC
316 GA-C
** * *
52855338 TTCAGTCTGCTCCAATGCAACTTCAAGGAGATAAGGTTTGATTTGATCTGCTCTACTGCAACTTC
1 TTCAACCTGCTCCAATACAACTTCAAGGAGATAAGGTTTGCTTTGATCTGCTCTACTGCAACTTC
* *
52855403 AGAGAGATAAGATCTGTGATTTATAGCTTCAATCTATTCCATTACAACTTCAGGGAAATAAGATT
66 AGAGAGATAAGATCTGTGATTTATAGCTTCAATCTGTTCCA-TGCAACTTCAGGGAAATAAGATT
* * *
52855468 TGCTATCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTAGTGACTTCAACC
130 TGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACC
52855526 GATCTTGCTA
Statistics
Matches: 439, Mismatches: 52, Indels: 31
0.84 0.10 0.06
Matches are distributed among these distances:
311 21 0.05
312 1 0.00
313 3 0.01
314 2 0.00
315 6 0.01
316 4 0.01
317 33 0.08
318 206 0.47
319 130 0.30
320 4 0.01
321 2 0.00
322 27 0.06
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (318 bp):
TTCAACCTGCTCCAATACAACTTCAAGGAGATAAGGTTTGCTTTGATCTGCTCTACTGCAACTTC
AGAGAGATAAGATCTGTGATTTATAGCTTCAATCTGTTCCATGCAACTTCAGGGAAATAAGATTT
GCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGACTTCAACCTGCTCCAC
CGCAACTTCAGAGAGATAAGACATTTATTTATAGCATCAATCTGTTCACTGCAACTTCAGAGAAA
TAAGATTAGCTATCTTCAATCTGCTTCACTGCAACTTCAGGGAGATAAAACTAGTGAC
Found at i:52857991 original size:37 final size:37
Alignment explanation
Indices: 52857938--52858077 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
52857928 CGAATAGTCC
* *
52857938 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
52857975 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
52858012 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
52858049 CCACACGTAGTCATCGGGCCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
52858078 ATATATTTCC
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:52858272 original size:99 final size:99
Alignment explanation
Indices: 52858151--52858351 Score: 384
Period size: 99 Copynumber: 2.0 Consensus size: 99
52858141 TTGTAATTCA
*
52858151 TTTGCCTCATCAAATATCTAATAATATACACCTTTCACATTTGGTCATTCGGCCACAATGTACAT
1 TTTGCCTCATCAAATATCTAATAATACACACCTTTCACATTTGGTCATTCGGCCACAATGTACAT
52858216 ACATCTCCTACATATTTCACACTAGCCATTCGGC
66 ACATCTCCTACATATTTCACACTAGCCATTCGGC
*
52858250 TTTGCCTCATCAAATATCTAATAATACACACCTTTCACATTTGGTCATTCGGCTACAATGTACAT
1 TTTGCCTCATCAAATATCTAATAATACACACCTTTCACATTTGGTCATTCGGCCACAATGTACAT
52858315 ACATCTCCTACATATTTCACACTAGCCATTCGGC
66 ACATCTCCTACATATTTCACACTAGCCATTCGGC
52858349 TTT
1 TTT
52858352 ACCACATATA
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 100 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (99 bp):
TTTGCCTCATCAAATATCTAATAATACACACCTTTCACATTTGGTCATTCGGCCACAATGTACAT
ACATCTCCTACATATTTCACACTAGCCATTCGGC
Found at i:52858380 original size:48 final size:48
Alignment explanation
Indices: 52858317--52858704 Score: 632
Period size: 48 Copynumber: 8.1 Consensus size: 48
52858307 ATGTACATAC
*
52858317 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
52858365 ATCTCATACATATTTCACACAAGTCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
52858413 ATCTCATACATATTTCACACTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
52858461 ATCTCATCCATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
52858509 ATCTCATGCATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
52858557 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
52858605 ATCTCATGCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
52858653 ATCTCATATATATTTCACATTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
52858701 ATCT
1 ATCT
52858705 ATTTATCTTG
Statistics
Matches: 313, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 313 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:52858455 original size:96 final size:96
Alignment explanation
Indices: 52858218--52858704 Score: 653
Period size: 96 Copynumber: 5.0 Consensus size: 96
52858208 ATGTACATAC
* * * * *
52858218 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTGCCTCATCA-A-ATATCTAATAATACACAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT-ATACATATC---TCATACATA-
* * *
52858281 CTTTCACATTTGGTCATTCGGC--TA-CA-ATGTACAT
61 -TTTCACA-TTAGCCATTCGGCTTTACCACATATACAT
*
52858315 ACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 --ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
** * *
52858380 CACACAAGTCATTCAGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* *
52858413 ATCTCATACATATTTCACACTAGCCATTCGGCTTTGCCACATATACATATCTCATCCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
52858478 CATTAGCCATTCGGCTTTACCACATATGCAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
* * *
52858509 ATCTCATGCATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
52858574 CATTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
* *
52858605 ATCTCATGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
52858670 CATTATCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
52858701 ATCT
1 ATCT
52858705 ATTTATCTTG
Statistics
Matches: 357, Mismatches: 25, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
94 9 0.03
95 7 0.02
96 278 0.78
97 9 0.03
98 8 0.02
99 41 0.11
100 5 0.01
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (96 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACAT
Found at i:52871280 original size:31 final size:29
Alignment explanation
Indices: 52871245--52871308 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 29
52871235 ATAAGAGCAA
*
52871245 AAAATAAATAAATG-AATAAAACGAATAAGCT
1 AAAATAAA-AAAGGAAATAAAA--AATAAGCT
*
52871276 AAAATAAAAAAGGAAATAATAAATAAGCT
1 AAAATAAAAAAGGAAATAAAAAATAAGCT
52871305 AAAA
1 AAAA
52871309 AATATTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 12 0.40
30 4 0.13
31 14 0.47
ACGTcount: A:0.69, C:0.05, G:0.09, T:0.17
Consensus pattern (29 bp):
AAAATAAAAAAGGAAATAAAAAATAAGCT
Found at i:52871416 original size:15 final size:15
Alignment explanation
Indices: 52871373--52871416 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
52871363 ATTTTAAAAA
* *
52871373 AATGATAGTAATAGT
1 AATGATAATAATATT
52871388 AATGATAATAATATT
1 AATGATAATAATATT
*
52871403 AATGGTAATAATAT
1 AATGATAATAATAT
52871417 AAGTAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (15 bp):
AATGATAATAATATT
Found at i:52871554 original size:3 final size:3
Alignment explanation
Indices: 52871542--52871687 Score: 113
Period size: 3 Copynumber: 50.0 Consensus size: 3
52871532 AGGTAAAAAC
* *
52871542 TAA T-A TAA TAA TAA TAA T-A TAA TAG TAA TAA TAA T-A TAA TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** * * *
52871587 TAG TAA TAG TAA TAA -AGA TAA TGG TAA TAA AAA TAA TAC TAA TAG
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
52871632 TAA TAA GAA TAA GAA TAA TAA T-A TAT TTA TAA TAA TAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
52871679 AAA TAA TAA
1 TAA TAA TAA
52871688 GATTAACTAA
Statistics
Matches: 109, Mismatches: 28, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
2 9 0.08
3 99 0.91
4 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.08, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:52872373 original size:16 final size:15
Alignment explanation
Indices: 52872349--52872388 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
52872339 TAGATTTGAA
*
52872349 AAAAAAAAAGAAAAT
1 AAAAAAAAAGAAAAG
*
52872364 AAATAAAAAAGGAAAG
1 AAA-AAAAAAGAAAAG
52872380 AAAAAAAAA
1 AAAAAAAAA
52872389 CAACAGTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (15 bp):
AAAAAAAAAGAAAAG
Found at i:52877306 original size:45 final size:44
Alignment explanation
Indices: 52877222--52877306 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
52877212 ATGTAATCTA
*
52877222 AACTCATTGAATTGTGTCTGAGTTCATGATATATGTGACATCCG
1 AACTCATTGAATTGTGTCTGAGTTCATGATATATATGACATCCG
* * *
52877266 AACTCATTGAATTTTGGTCTGAGTTCGTGATATGTATGACA
1 AACTCATTGAATTGT-GTCTGAGTTCATGATATATATGACA
52877307 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 14 0.39
45 22 0.61
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (44 bp):
AACTCATTGAATTGTGTCTGAGTTCATGATATATATGACATCCG
Found at i:52895951 original size:15 final size:15
Alignment explanation
Indices: 52895900--52895945 Score: 92
Period size: 15 Copynumber: 3.1 Consensus size: 15
52895890 TTGTCCTTTA
52895900 AAACTTTCAGTTTTC
1 AAACTTTCAGTTTTC
52895915 AAACTTTCAGTTTTC
1 AAACTTTCAGTTTTC
52895930 AAACTTTCAGTTTTC
1 AAACTTTCAGTTTTC
52895945 A
1 A
52895946 CCCTTTTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.46
Consensus pattern (15 bp):
AAACTTTCAGTTTTC
Found at i:52902879 original size:71 final size:71
Alignment explanation
Indices: 52902763--52902904 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
52902753 AGGCTTAATT
52902763 AGTAAAAAAAAAGAGGCTATTTTTAAAAGTTAATTAGTAAATTAGGCCGGTTTTCTCAAAATTTA
1 AGTAAAAAAAAAGAGGCTATTTTTAAAAGTTAATTAGTAAATTAGGCCGGTTTTCTCAAAATTTA
52902828 GGAAAA
66 GGAAAA
*
52902834 AGTAAAAGAAAAGAGGCTATTTTTAAAAGTTAATTAGTAAATTAGGCCGGTTTTCTCAAAATTTA
1 AGTAAAAAAAAAGAGGCTATTTTTAAAAGTTAATTAGTAAATTAGGCCGGTTTTCTCAAAATTTA
52902899 GGAAAA
66 GGAAAA
52902905 TTTGACCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.31
Consensus pattern (71 bp):
AGTAAAAAAAAAGAGGCTATTTTTAAAAGTTAATTAGTAAATTAGGCCGGTTTTCTCAAAATTTA
GGAAAA
Found at i:52906565 original size:7 final size:8
Alignment explanation
Indices: 52906539--52906567 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
52906529 TGAAATTTGG
52906539 ATTTTAAA
1 ATTTTAAA
52906547 ATTTTAAA
1 ATTTTAAA
52906555 ATTTT-AA
1 ATTTTAAA
52906562 ATTTTA
1 ATTTTA
52906568 TATGAATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
ATTTTAAA
Found at i:52908161 original size:8 final size:8
Alignment explanation
Indices: 52908148--52908172 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
52908138 CTAGAAGAGC
52908148 TAATATAT
1 TAATATAT
52908156 TAATATAT
1 TAATATAT
52908164 TAATATAT
1 TAATATAT
52908172 T
1 T
52908173 GTGATGGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TAATATAT
Found at i:52908415 original size:43 final size:43
Alignment explanation
Indices: 52908354--52908487 Score: 173
Period size: 43 Copynumber: 3.1 Consensus size: 43
52908344 GGCATTTATT
*
52908354 TAAAGACCATGACCTTTAGCGGCGCTTTTCCCGCAAACGCCGC
1 TAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
* * * * *
52908397 TAAAGACCATGGCCTTTAGCGGTGCTTTTTCTACAAACTCCGC
1 TAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
* *
52908440 TATAGA--ATAGACCTTTAGCGGCGCTTTTCTCACAAACGCCGC
1 TAAAGACCAT-GACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
52908482 TAAAGA
1 TAAAGA
52908488 ATATAACCTT
Statistics
Matches: 76, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
41 2 0.03
42 32 0.42
43 42 0.55
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (43 bp):
TAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
Found at i:52911965 original size:41 final size:41
Alignment explanation
Indices: 52911912--52911989 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
52911902 CTTTTGCGGT
* *
52911912 GTTTTTAACAAAAATATCACTATAGCTCAATTTTTTGCATC
1 GTTTTTAACAAAAACACCACTATAGCTCAATTTTTTGCATC
* * *
52911953 GTTTTTACCAAAAACGCCACTATAGCTTAATTTTTTG
1 GTTTTTAACAAAAACACCACTATAGCTCAATTTTTTG
52911990 TGGCGTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (41 bp):
GTTTTTAACAAAAACACCACTATAGCTCAATTTTTTGCATC
Found at i:52911997 original size:41 final size:39
Alignment explanation
Indices: 52911929--52912025 Score: 115
Period size: 39 Copynumber: 2.4 Consensus size: 39
52911919 ACAAAAATAT
* *
52911929 CACTATAGCTCAATTTTTTGCATCGTTTTTACCA-AAAACGC
1 CACTATAGCTTAATTTTTTGCAGCG-TTTT--CAGAAAACGC
**
52911970 CACTATAGCTTAATTTTTTGTGGCGTTTTCAGAAAACGC
1 CACTATAGCTTAATTTTTTGCAGCGTTTTCAGAAAACGC
*
52912009 CACTATTGCTTAATTTT
1 CACTATAGCTTAATTTT
52912026 AATTTTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.04
39 23 0.46
40 4 0.08
41 21 0.42
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (39 bp):
CACTATAGCTTAATTTTTTGCAGCGTTTTCAGAAAACGC
Found at i:52912163 original size:7 final size:7
Alignment explanation
Indices: 52912151--52912175 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
52912141 ATATAGACTA
52912151 AAATATT
1 AAATATT
52912158 AAATATT
1 AAATATT
52912165 AAATATT
1 AAATATT
52912172 AAAT
1 AAAT
52912176 TTTTAGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATATT
Found at i:52912193 original size:15 final size:15
Alignment explanation
Indices: 52912173--52912202 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
52912163 TTAAATATTA
*
52912173 AATTTTTAGTTTTTT
1 AATTTTTAATTTTTT
52912188 AATTTTTAATTTTTT
1 AATTTTTAATTTTTT
52912203 TTGAAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
AATTTTTAATTTTTT
Found at i:52912781 original size:15 final size:15
Alignment explanation
Indices: 52912746--52912793 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
52912736 CTTAAACTCC
* *
52912746 AACCCTTAAACCATA
1 AACCCATAATCCATA
*
52912761 AA-CCATAATCCCTA
1 AACCCATAATCCATA
52912775 AACCCATAATCCATA
1 AACCCATAATCCATA
52912790 AACC
1 AACC
52912794 TTAAAATAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCATAATCCATA
Done.