Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 195 of 345
Found at i:55564577 original size:14 final size:14
Alignment explanation
Indices: 55564558--55564596 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
55564548 TATTAATTAA
55564558 TTAAAAAATTATTT
1 TTAAAAAATTATTT
*
55564572 TTAAAAAAAATATTT
1 TT-AAAAAATTATTT
55564587 TTAAAAAATT
1 TTAAAAAATT
55564597 TAAAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAAAAAATTATTT
Found at i:55564580 original size:15 final size:15
Alignment explanation
Indices: 55564560--55564594 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
55564550 TTAATTAATT
*
55564560 AAAAAATTATTTTTA
1 AAAAAAATATTTTTA
55564575 AAAAAAATATTTTTA
1 AAAAAAATATTTTTA
55564590 AAAAA
1 AAAAA
55564595 TTTAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAAAAATATTTTTA
Found at i:55566559 original size:22 final size:24
Alignment explanation
Indices: 55566507--55566560 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
55566497 TTTTTGATGA
55566507 TTAAATTATTGTTATTAAATATGCT
1 TTAAATTATTGTTATT-AATATGCT
*
55566532 TGAAATTATTG-TATT-ATAT-CTT
1 TTAAATTATTGTTATTAATATGC-T
55566554 TTAAATT
1 TTAAATT
55566561 GGATTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 1 0.04
22 11 0.42
24 4 0.15
25 10 0.38
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (24 bp):
TTAAATTATTGTTATTAATATGCT
Found at i:55571122 original size:20 final size:20
Alignment explanation
Indices: 55571094--55571132 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
55571084 ATTAACAATT
55571094 TATAATTTT-TTAGATTTTTA
1 TATAATTTTATTA-ATTTTTA
*
55571114 TATACTTTTATTAATTTTT
1 TATAATTTTATTAATTTTT
55571133 GACTGATGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TATAATTTTATTAATTTTTA
Found at i:55572344 original size:40 final size:40
Alignment explanation
Indices: 55572300--55572380 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
55572290 TTTATGTAAC
55572300 TAAATTGTATATGTTTTTGTGCTTGAATTAAATGTTGTGT
1 TAAATTGTATATGTTTTTGTGCTTGAATTAAATGTTGTGT
55572340 TAAATTGTATATGTTTTTGTGCTTGAATTAAATGTTGTGT
1 TAAATTGTATATGTTTTTGTGCTTGAATTAAATGTTGTGT
55572380 T
1 T
55572381 TGTGAATTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.25, C:0.02, G:0.20, T:0.53
Consensus pattern (40 bp):
TAAATTGTATATGTTTTTGTGCTTGAATTAAATGTTGTGT
Found at i:55575743 original size:18 final size:18
Alignment explanation
Indices: 55575720--55575756 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
55575710 GATAGTATAT
55575720 ACTGAAAACAGTAGCAAA
1 ACTGAAAACAGTAGCAAA
* *
55575738 ACTGAAAACTGTAGTAAA
1 ACTGAAAACAGTAGCAAA
55575756 A
1 A
55575757 TTGCGATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.16, T:0.16
Consensus pattern (18 bp):
ACTGAAAACAGTAGCAAA
Found at i:55589063 original size:48 final size:48
Alignment explanation
Indices: 55588992--55589470 Score: 517
Period size: 48 Copynumber: 10.0 Consensus size: 48
55588982 TGATACTATG
* *
55588992 GTTATGTGAGCTAGTGTAAGACCATGTTTGGAACGTGGCATCGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * ** * *
55589040 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGATATGTTATCAGCGTT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * * * *
55589088 AATATGTGAGCCAGTATAAGACCATGTTTGGAACATAGCATCAGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* ** * *
55589136 GTTATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCATCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * *
55589184 AATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * *
55589232 GTTATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * * *
55589280 AATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * *
55589328 AATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * *
55589376 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACAGGGCATCGACTTT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * *
55589424 GTTACGAGAGCTAGTTTAAGACTATGTCTGGGACATGGCATCGGCAT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
55589471 CTTACCCTTT
Statistics
Matches: 360, Mismatches: 71, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 360 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
Found at i:55589466 original size:96 final size:96
Alignment explanation
Indices: 55588994--55589471 Score: 614
Period size: 96 Copynumber: 5.0 Consensus size: 96
55588984 ATACTATGGT
* *
55588994 TATGTGAGCTAGTGTAAGACCATGTTTGGAACGTGGCATCGGCATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * ** * * *
55589059 GACCATGTCTGGGATATGTTATCAGCGTTAA
66 GACCATGTTTGGGACATGGCATCGGCATCAA
* * *
55589090 TATGTGAGCCAGTATAAGACCATGTTTGGAACATAGCATCAGCATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
** *
55589155 GACCATGTTTGGGACATGGCATCATCCTCAA
66 GACCATGTTTGGGACATGGCATCGGCATCAA
*
55589186 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
*
55589251 GACCATGTTTGGGACATGGCATCGGCCTCAA
66 GACCATGTTTGGGACATGGCATCGGCATCAA
* *** * *
55589282 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* ***
55589347 GACCATGTTTGGAACATGGCATCGGCATTGT
66 GACCATGTTTGGGACATGGCATCGGCATCAA
* * * * * * * * *
55589378 TATGAGAGCTAGTGTAAGACCATGTCTGGGACAGGGCATCGACTTTGTTACGAGAGCTAGTTTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* *
55589443 GACTATGTCTGGGACATGGCATCGGCATC
66 GACCATGTTTGGGACATGGCATCGGCATC
55589472 TTACCCTTTT
Statistics
Matches: 334, Mismatches: 48, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 334 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
GACCATGTTTGGGACATGGCATCGGCATCAA
Found at i:55593446 original size:41 final size:41
Alignment explanation
Indices: 55593363--55593589 Score: 268
Period size: 41 Copynumber: 5.5 Consensus size: 41
55593353 ATAGCGGTGT
*
55593363 TTTTGGTAAAACGCCGCTAAAAA-CAGAGCAATATCA--GTGC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGC-AT-TCACGGCGC
* *
55593403 TTTTGGTAAAACGCCGTTAAAAACTAGAGCATTCACGGCGC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTCACGGCGC
** *
55593444 TTTTGGTAAAACGTGGCTAAAAACCAGAGCATTCGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTCACGGCGC
55593485 TTTTTGGTAAAACGCCGCTAAAAACCAGAGCATT-AGCGGCGC
1 -TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTCA-CGGCGC
*
55593527 TTTTGGTAAAACGCCGCTAAAAATC-GAAGCATT-AGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAACCAG-AGCATTCA-CGGCGC
** *
55593568 TTTCCGTAAAACGTCGCTAAAA
1 TTTTGGTAAAACGCCGCTAAAA
55593590 GTCATATAAC
Statistics
Matches: 166, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 3 0.02
40 25 0.15
41 101 0.61
42 37 0.22
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (41 bp):
TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTCACGGCGC
Found at i:55593515 original size:83 final size:81
Alignment explanation
Indices: 55593347--55593589 Score: 292
Period size: 83 Copynumber: 3.0 Consensus size: 81
55593337 TGTAAAACAT
* * * * * * *
55593347 AGAGCAATAGCGGTGTTTTTGGTAAAACGCCGCTAAAAACAGAGCAATATCAGTGCTTTTGGTAA
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTAA
* *
55593412 AACGCCGTTAAAAACT
66 AACGCCGCTAAAAACC
** *
55593428 AGAGCATTCA-CGGCGCTTTTGGTAAAACGTGGCTAAAAACCAGAGCATTCGCGGCGCTTTTTGG
1 AGAGCATT-AGCGGCGCTTTTGGTAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGC-TTTTGG
55593492 TAAAACGCCGCTAAAAACC
63 TAAAACGCCGCTAAAAACC
**
55593511 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATC-GAAGCATTAGCGGCGCTTTCCGT
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA-CAG-AGCATTAGCGGCGCTTTTGGT
*
55593575 AAAACGTCGCTAAAA
64 AAAACGCCGCTAAAA
55593590 GTCATATAAC
Statistics
Matches: 138, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
81 32 0.23
82 34 0.25
83 72 0.52
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (81 bp):
AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTAA
AACGCCGCTAAAAACC
Found at i:55593548 original size:124 final size:123
Alignment explanation
Indices: 55593362--55593589 Score: 334
Period size: 124 Copynumber: 1.8 Consensus size: 123
55593352 AATAGCGGTG
* * *
55593362 TTTTTGGTAAAACGCCGCTAAAAACAGAGCAATATCAGTGCTTTTGGTAAAACGCCGTTAAAAAC
1 TTTTTGGTAAAACGCCGCTAAAAACAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAA-
** *
55593427 TAG-AGCATTCA-CGGCGCTTTTGGTAAAACGTGGCTAAAAACCAGAGCATTCGCGGCGC
65 TAGAAGCATT-AGCGGCGCTTTCCGTAAAACGTCGCTAAAAACCAGAGCATTCGCGGCGC
* *
55593485 TTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
1 TTTTTGGTAAAACGCCGCTAAAAA-CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAA
*
55593550 TCGAAGCATTAGCGGCGCTTTCCGTAAAACGTCGCTAAAA
65 TAGAAGCATTAGCGGCGCTTTCCGTAAAACGTCGCTAAAA
55593590 GTCATATAAC
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
123 27 0.29
124 66 0.71
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.23
Consensus pattern (123 bp):
TTTTTGGTAAAACGCCGCTAAAAACAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAAT
AGAAGCATTAGCGGCGCTTTCCGTAAAACGTCGCTAAAAACCAGAGCATTCGCGGCGC
Found at i:55593916 original size:15 final size:15
Alignment explanation
Indices: 55593893--55593929 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
55593883 TATTTTAAGT
*
55593893 TTTATGGATTATGGG
1 TTTAGGGATTATGGG
*
55593908 TTTAGGGATTATGGT
1 TTTAGGGATTATGGG
55593923 TTTAGGG
1 TTTAGGG
55593930 TTAGGGGTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
TTTAGGGATTATGGG
Found at i:55594484 original size:2 final size:2
Alignment explanation
Indices: 55594473--55594506 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
55594463 TTTTATCCCT
55594473 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
55594507 TTAAGGTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:55594783 original size:17 final size:18
Alignment explanation
Indices: 55594761--55594794 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
55594751 TATTTGTTTT
55594761 AATATA-TTAAAATTATC
1 AATATAGTTAAAATTATC
*
55594778 AATATAGTTTAAATTAT
1 AATATAGTTAAAATTAT
55594795 TTAAGAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AATATAGTTAAAATTATC
Found at i:55597064 original size:37 final size:37
Alignment explanation
Indices: 55597011--55597101 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
55597001 TTATTACGAA
55597011 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
55597048 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
55597085 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
55597102 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:55597252 original size:49 final size:49
Alignment explanation
Indices: 55597197--55597513 Score: 571
Period size: 49 Copynumber: 6.5 Consensus size: 49
55597187 TTTTACATTA
*
55597197 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
55597246 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
55597295 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACCTCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
55597344 GTCGTTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
55597393 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
55597442 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACCTCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
55597491 GCCATTAGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
55597514 TATATCTCAT
Statistics
Matches: 258, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 258 1.00
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:55600749 original size:81 final size:81
Alignment explanation
Indices: 55600652--55600802 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
55600642 TACCTTTTTG
* * * * * *
55600652 AATTTGTGATAGATTTTCAGTGGG-AATTTATTG-ATATTCTTTGTCACTTACTTGTGTATCTTG
1 AATTTGTAATAAATTTTCAGTGGGAAAATT-TTGCAGA-TCTTTATCACATACTTGTGTATCTTG
55600715 GCTGTTGGTACATTGTTT
64 GCTGTTGGTACATTGTTT
* *
55600733 AATTTGTAATAAATTTTCAGTGGGAAAATTTTGCAGATGTTTATCACATGCTTGTGTATCTTGGC
1 AATTTGTAATAAATTTTCAGTGGGAAAATTTTGCAGATCTTTATCACATACTTGTGTATCTTGGC
55600798 TGTTG
66 TGTTG
55600803 ACTTCAGAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
81 54 0.90
82 6 0.10
ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46
Consensus pattern (81 bp):
AATTTGTAATAAATTTTCAGTGGGAAAATTTTGCAGATCTTTATCACATACTTGTGTATCTTGGC
TGTTGGTACATTGTTT
Found at i:55603785 original size:19 final size:19
Alignment explanation
Indices: 55603759--55603820 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
55603749 TGATTCTATA
*
55603759 TTTA-TATTTAATTTAATT
1 TTTATTATTTATTTTAATT
*
55603777 TTTATTATTTATTTTAGTT
1 TTTATTATTTATTTTAATT
* * * *
55603796 TTGATTCTATATTTTTATT
1 TTTATTATTTATTTTAATT
55603815 TTTATT
1 TTTATT
55603821 TTAATTTGAT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
18 4 0.11
19 31 0.89
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTATTATTTATTTTAATT
Found at i:55603788 original size:25 final size:24
Alignment explanation
Indices: 55603757--55603827 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 24
55603747 TTTGATTCTA
* *
55603757 TATTTATATTTAATTTAATTTTTAT
1 TATTTAT-TTTATTTTAATTTATAT
*
55603782 TATTTATTTTAGTTTTGATTCTATAT
1 TATTTATTTTA-TTTTAATT-TATAT
55603808 T-TTTATTTTTATTTTAATTT
1 TATTTA-TTTTATTTTAATTT
55603828 GATAATGAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 5 0.13
25 24 0.62
26 10 0.26
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.70
Consensus pattern (24 bp):
TATTTATTTTATTTTAATTTATAT
Found at i:55603814 original size:6 final size:6
Alignment explanation
Indices: 55603759--55603827 Score: 50
Period size: 6 Copynumber: 11.2 Consensus size: 6
55603749 TGATTCTATA
* * * * *
55603759 TTTATA TTTAAT TTAATT TTTATT ATTTA-T TTTAGTT TTGATT CTATATT
1 TTTATT TTTATT TTTATT TTTATT -TTTATT TTTA-TT TTTATT -TTTATT
*
55603809 TTTATT TTTATT TTAATT T
1 TTTATT TTTATT TTTATT T
55603828 GATAATGAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
5 4 0.08
6 33 0.67
7 12 0.24
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (6 bp):
TTTATT
Found at i:55603921 original size:16 final size:16
Alignment explanation
Indices: 55603900--55603940 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
55603890 TTGATAACGA
55603900 ATTTTAATTTT-TTTAT
1 ATTTTAATTTTATTT-T
55603916 ATTTTAATTTTATTTT
1 ATTTTAATTTTATTTT
55603932 -TTTTAATTT
1 ATTTTAATTT
55603941 CAAAAAGCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.38
16 12 0.50
17 3 0.12
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
ATTTTAATTTTATTTT
Found at i:55603924 original size:22 final size:21
Alignment explanation
Indices: 55603899--55603940 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
55603889 TTTGATAACG
55603899 AATTTTAATTTTTTTATATTTT
1 AATTTTAATTTTTTTA-ATTTT
*
55603921 AATTTTATTTTTTTTAATTT
1 AATTTTAATTTTTTTAATTT
55603941 CAAAAAGCGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (21 bp):
AATTTTAATTTTTTTAATTTT
Found at i:55605627 original size:17 final size:18
Alignment explanation
Indices: 55605607--55605640 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
55605597 TACCAAGGCA
*
55605607 TGAATTATG-GATTAATT
1 TGAATAATGTGATTAATT
55605624 TGAATAATGTGATTAAT
1 TGAATAATGTGATTAAT
55605641 GAACAAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (18 bp):
TGAATAATGTGATTAATT
Found at i:55606100 original size:43 final size:43
Alignment explanation
Indices: 55606009--55606125 Score: 155
Period size: 43 Copynumber: 2.7 Consensus size: 43
55605999 GAAGTCCAAA
* * * ** *
55606009 CTCGTTGAGTGGTCCGGGTTCGTAATATATG-TGGCATCCGAG
1 CTCGTTGAGTGGTCCGAGATCATAATGGATGCTAGCATCCGAG
*
55606051 CTCGTTGAGTGGTCCGAGATCATTATGGATGCTAGCATCCGAG
1 CTCGTTGAGTGGTCCGAGATCATAATGGATGCTAGCATCCGAG
*
55606094 CTCGTTGAGTGGTCCGAGTTCATAATGGATGC
1 CTCGTTGAGTGGTCCGAGATCATAATGGATGC
55606126 GATACATGTG
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 25 0.38
43 40 0.62
ACGTcount: A:0.19, C:0.20, G:0.32, T:0.30
Consensus pattern (43 bp):
CTCGTTGAGTGGTCCGAGATCATAATGGATGCTAGCATCCGAG
Found at i:55609745 original size:29 final size:29
Alignment explanation
Indices: 55609713--55609785 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
55609703 CTTCGAGCTC
* *
55609713 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
55609742 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
55609771 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
55609786 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:55610987 original size:25 final size:24
Alignment explanation
Indices: 55610959--55611015 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
55610949 TTTTTTTCCT
55610959 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* * *
55610984 TTTCTTTTTTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
55611008 TATTCTTT
1 T-TTCTTT
55611016 CTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:55618842 original size:29 final size:29
Alignment explanation
Indices: 55618810--55618882 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
55618800 CTTCGAGCTC
* *
55618810 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
55618839 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
55618868 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
55618883 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:55620094 original size:24 final size:24
Alignment explanation
Indices: 55620053--55620108 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
55620043 TTTTTTTCCT
55620053 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
55620078 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
55620101 TATTCTTT
1 T-TTCTTT
55620109 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:55626735 original size:29 final size:29
Alignment explanation
Indices: 55626703--55626775 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
55626693 CTTCGAGCTC
* *
55626703 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
55626732 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
55626761 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
55626776 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:55634077 original size:605 final size:605
Alignment explanation
Indices: 55632922--55634128 Score: 2270
Period size: 605 Copynumber: 2.0 Consensus size: 605
55632912 ATCAATTACA
*
55632922 ACCCGGGAAAGGCGAATATGGTCGCTGATGCACTGAGTAGAAAATCCTTGTATGTCTTGAGAGCT
1 ACCCAGGAAAGGCGAATATGGTCGCTGATGCACTGAGTAGAAAATCCTTGTATGTCTTGAGAGCT
* *
55632987 ATGGATGCTCGTTTGACCTTGCTTGATGATGGTTTAGTTTTGGCCGAGCTGGAGGCTAGGCCAAC
66 ATCGATGCTCCTTTGACCTTGCTTGATGATGGTTTAGTTTTGGCCGAGCTGGAGGCTAGGCCAAC
*
55633052 ATTTCTGCAAGAAATTCATGATGCTCAGTTAAATGATGATGACTTGCAAGCAAAAAGGGCTCAAT
131 ATTTCTGCAAGAAATTCATGATGCTCAGTTAAATGATGATGACTTGCAAGAAAAAAGGGCTCAAT
55633117 GTGAGTCTGGGATTGAGTCCGATTTTCAAATTAGTCCTGATGGATGTTTGATGTTCAAAGATAGG
196 GTGAGTCTGGGATTGAGTCCGATTTTCAAATTAGTCCTGATGGATGTTTGATGTTCAAAGATAGG
55633182 GTTTGTGTACCCAAAGACAATGAACTTATTCAGAAGATTTTGCAAGAAGCACATAACAGTCATTT
261 GTTTGTGTACCCAAAGACAATGAACTTATTCAGAAGATTTTGCAAGAAGCACATAACAGTCATTT
55633247 GTCTATTCACCCCGGAAGTACCAAGATGTACAATGATTTAAAGAAGATGTACTGGTGGAACGGCA
326 GTCTATTCACCCCGGAAGTACCAAGATGTACAATGATTTAAAGAAGATGTACTGGTGGAACGGCA
55633312 TGAAAAGAGATGTTTCTGAATTTGTATCGAAATGCGTAGTATGTCAGCAAGTTAAAGTTGAACAT
391 TGAAAAGAGATGTTTCTGAATTTGTATCGAAATGCGTAGTATGTCAGCAAGTTAAAGTTGAACAT
* * *
55633377 CAAGTGCCTTCAGGTATGTTATAGCCTGTAATGGTCGCCGAATGGAAGTGGGATAGAATTACCAT
456 CAAGTGCCTTCAGGTATGTTACAGCCTGTAATGGTCACCAAATGGAAGTGGGATAGAATTACCAT
*
55633442 GGACTTTGTGACAGGACTACCTAAGACTCCAAAAAAGAAAGATGCCATATAGGTCATAGTGGACA
521 GGACTTCGTGACAGGACTACCTAAGACTCCAAAAAAGAAAGATGCCATATAGGTCATAGTGGACA
55633507 AATTGACAAATTCGGCTCAT
586 AATTGACAAATTCGGCTCAT
*
55633527 ACCCAGGAAAGGCGAATGTGGTCGCTGATGCACTGAGTAGAAAATCCTTGTATGTCTTGAGAGCT
1 ACCCAGGAAAGGCGAATATGGTCGCTGATGCACTGAGTAGAAAATCCTTGTATGTCTTGAGAGCT
*
55633592 ATCGATGCTCCTTTGACCTTGTTTGATGATGGTTTAGTTTTGGCCGAGCTGGAGGCTAGGCCAAC
66 ATCGATGCTCCTTTGACCTTGCTTGATGATGGTTTAGTTTTGGCCGAGCTGGAGGCTAGGCCAAC
55633657 ATTTCTGCAAGAAATTCATGATGCTCAGTTAAATGATGATGACTTGCAAGAAAAAAGGGCTCAAT
131 ATTTCTGCAAGAAATTCATGATGCTCAGTTAAATGATGATGACTTGCAAGAAAAAAGGGCTCAAT
55633722 GTGAGTCTGGGATTGAGTCCGATTTTCAAATTAGTCCTGATGGATGTTTGATGTTCAAAGATAGG
196 GTGAGTCTGGGATTGAGTCCGATTTTCAAATTAGTCCTGATGGATGTTTGATGTTCAAAGATAGG
*
55633787 GTTTGTGTACCCAAAGACAATGAACTTATTCAGAAGATTTTTCAAGAAGCACATAACAGTCATTT
261 GTTTGTGTACCCAAAGACAATGAACTTATTCAGAAGATTTTGCAAGAAGCACATAACAGTCATTT
* *
55633852 GTCTGTTCACCCGGGAAGTACCAAGATGTACAATGATTTAAAGAAGATGTACTGGTGGAACGGCA
326 GTCTATTCACCCCGGAAGTACCAAGATGTACAATGATTTAAAGAAGATGTACTGGTGGAACGGCA
*
55633917 TGAAAAGAGATGTTTCTGAATTTGTATCGAAATGCGTAGTATGTCAGTAAGTTAAAGTTGAACAT
391 TGAAAAGAGATGTTTCTGAATTTGTATCGAAATGCGTAGTATGTCAGCAAGTTAAAGTTGAACAT
*
55633982 CAAGTGCCTTTAGGTATGTTACAGCCTGTAATGGTCACCAAATGGAAGTGGGATAGAATTACCAT
456 CAAGTGCCTTCAGGTATGTTACAGCCTGTAATGGTCACCAAATGGAAGTGGGATAGAATTACCAT
*
55634047 GGACTTCGTGACAGGACTACCTAAGACTCCAAAAAAGAAAGATGCCATATGGGTCATAGTGGACA
521 GGACTTCGTGACAGGACTACCTAAGACTCCAAAAAAGAAAGATGCCATATAGGTCATAGTGGACA
55634112 AATTGACAAATTCGGCT
586 AATTGACAAATTCGGCT
55634129 TATTGCATCA
Statistics
Matches: 586, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
605 586 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (605 bp):
ACCCAGGAAAGGCGAATATGGTCGCTGATGCACTGAGTAGAAAATCCTTGTATGTCTTGAGAGCT
ATCGATGCTCCTTTGACCTTGCTTGATGATGGTTTAGTTTTGGCCGAGCTGGAGGCTAGGCCAAC
ATTTCTGCAAGAAATTCATGATGCTCAGTTAAATGATGATGACTTGCAAGAAAAAAGGGCTCAAT
GTGAGTCTGGGATTGAGTCCGATTTTCAAATTAGTCCTGATGGATGTTTGATGTTCAAAGATAGG
GTTTGTGTACCCAAAGACAATGAACTTATTCAGAAGATTTTGCAAGAAGCACATAACAGTCATTT
GTCTATTCACCCCGGAAGTACCAAGATGTACAATGATTTAAAGAAGATGTACTGGTGGAACGGCA
TGAAAAGAGATGTTTCTGAATTTGTATCGAAATGCGTAGTATGTCAGCAAGTTAAAGTTGAACAT
CAAGTGCCTTCAGGTATGTTACAGCCTGTAATGGTCACCAAATGGAAGTGGGATAGAATTACCAT
GGACTTCGTGACAGGACTACCTAAGACTCCAAAAAAGAAAGATGCCATATAGGTCATAGTGGACA
AATTGACAAATTCGGCTCAT
Found at i:55639674 original size:29 final size:29
Alignment explanation
Indices: 55639617--55639731 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
55639607 TACCTGTATC
* * *
55639617 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTAATA
*
55639645 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TAATA
* * *
55639674 TGGTCCGTTAGGCCCAAATCACATTAATG
1 TGGCCCATTAGGCCCAAATCACATTAATA
* *
55639703 TGGCCCATTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTAATA
55639731 T
1 T
55639732 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 26 0.36
29 45 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTAATA
Found at i:55639711 original size:58 final size:57
Alignment explanation
Indices: 55639608--55639718 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
55639598 AATTTCACAT
* * *
55639608 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTAATATGGCCCATTAGGCCCAAATC
* * * *
55639665 ACCTGTATATGGTCCGTTAGGCCCAAATCACATTAATGTGGCCCATTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTAATATGGCCCATTAGGCCCA
55639719 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.43
58 26 0.57
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTAATATGGCCCATTAGGCCCAAATC
Found at i:55641458 original size:46 final size:46
Alignment explanation
Indices: 55641408--55641577 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
55641398 TTGAGCATCC
*
55641408 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* * * * *
55641454 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCT
* * * *
55641501 GAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* *
55641547 GAGCTGGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
55641578 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 55 0.56
47 27 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
Found at i:55641561 original size:93 final size:93
Alignment explanation
Indices: 55641402--55641572 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
55641392 GGATGGTTGA
* *
55641402 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAGT
55641467 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
55641495 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCCTGAGCTGGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAGT
55641560 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
55641573 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:55647942 original size:84 final size:85
Alignment explanation
Indices: 55647686--55647983 Score: 347
Period size: 84 Copynumber: 3.5 Consensus size: 85
55647676 AAACCACATT
* * *
55647686 TGGGACGTTGGCATTGATATGTGATTACGTGGAAGACCCTGTCTAGGACAGTAGCATCGATATGT
1 TGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACAGT-GCATCGATATGT
*
55647751 GTTCTCGTGTAAGACCATGTC
65 GTTCTCGTGTAAGACCCTGTC
* * * *
55647772 TGAGATGTTGGCATCGATATGTGATTA-GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGT
1 TGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACAGT-GCATCGATATGT
*
55647836 GTTCTCGTGTAAGACAC-GTC
65 GTTCTCGTGTAAGACCCTGTC
* * * *
55647856 TGGGACGTTGGCATCGATATGTGATTACGTGTAAAACCATGTCTAGGACA-TCGATATTG-TATT
1 TGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACAGT-G-CATCGATATG
* * *
55647919 TGAT-TAGTGTAAGACCCTATC
64 TGTTCTCGTGTAAGACCCTGTC
* *
55647940 TGGGATAG-TGGCATCGATATGTGATTACATGTAAGACCATGTCT
1 TGGGA-CGTTGGCATCGATATGTGATTACGTGTAAGACCATGTCT
55647984 GGGATGTTGG
Statistics
Matches: 184, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
83 11 0.06
84 77 0.42
85 72 0.39
86 24 0.13
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (85 bp):
TGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACAGTGCATCGATATGTG
TTCTCGTGTAAGACCCTGTC
Found at i:55647988 original size:43 final size:43
Alignment explanation
Indices: 55647686--55647987 Score: 291
Period size: 43 Copynumber: 7.1 Consensus size: 43
55647676 AAACCACATT
* * *
55647686 TGGGAC-GTTGGCATTGATATGTGATTACGTGGAAGACCCTGTC
1 TGGGACAG-TGGCATCGATATGTGATTACGTGTAAGACCATGTC
* * *
55647729 TAGGACAGTAGCATCGATATGTG-TTCTCGTGTAAGACCATGTC
1 TGGGACAGTGGCATCGATATGTGATT-ACGTGTAAGACCATGTC
* * *
55647772 TGAGA-TGTTGGCATCGATATGTGATTA-GTGTAAGACCCTGTC
1 TGGGACAG-TGGCATCGATATGTGATTACGTGTAAGACCATGTC
* *
55647814 TGGGACAGTGGCATCGATATGTG-TTCTCGTGTAAGA-CACGTC
1 TGGGACAGTGGCATCGATATGTGATT-ACGTGTAAGACCATGTC
*
55647856 TGGGAC-GTTGGCATCGATATGTGATTACGTGTAAAACCATGTC
1 TGGGACAG-TGGCATCGATATGTGATTACGTGTAAGACCATGTC
* ** * * * *
55647899 TAGGACA-TCGATATTG-TATTTGATTA-GTGTAAGACCCTATC
1 TGGGACAGT-GGCATCGATATGTGATTACGTGTAAGACCATGTC
* *
55647940 TGGGATAGTGGCATCGATATGTGATTACATGTAAGACCATGTC
1 TGGGACAGTGGCATCGATATGTGATTACGTGTAAGACCATGTC
55647983 TGGGA
1 TGGGA
55647988 TGTTGGCATT
Statistics
Matches: 207, Mismatches: 37, Indels: 30
0.76 0.14 0.11
Matches are distributed among these distances:
41 24 0.12
42 89 0.43
43 91 0.44
44 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
TGGGACAGTGGCATCGATATGTGATTACGTGTAAGACCATGTC
Found at i:55648190 original size:19 final size:18
Alignment explanation
Indices: 55648166--55648209 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
55648156 GATACAAATT
55648166 ATATATGATGCAAATGAAA
1 ATATAT-ATGCAAATGAAA
* *
55648185 ATATATATGTATATGAAA
1 ATATATATGCAAATGAAA
55648203 AGTATAT
1 A-TATAT
55648210 TCGGCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (18 bp):
ATATATATGCAAATGAAA
Found at i:55653784 original size:43 final size:42
Alignment explanation
Indices: 55653737--55653934 Score: 179
Period size: 43 Copynumber: 4.6 Consensus size: 42
55653727 TGTGTTCTCA
* * *
55653737 TGTAAGACCACATCTGGGACGTTGGCATTGATATATGATTACG
1 TGTAAGACC-CGTCTGGGACGTTGGCATCGATATGTGATTACG
55653780 TGTAAGACCCTGTCTGGGACAG-TGGCATCGATATGTGATTACG
1 TGTAAGACCC-GTCTGGGAC-GTTGGCATCGATATGTGATTACG
* * * * * *
55653823 TGTAAGACCTTGTCTAGGACATCGGTATCG-TATTTGATTA-G
1 TGTAAGACC-CGTCTGGGACGTTGGCATCGATATGTGATTACG
* * *
55653864 TGTAAGACCCTATCTGGGATAG-TGGCATCGATATGTGATTACA
1 TGTAAGACCC-GTCTGGGA-CGTTGGCATCGATATGTGATTACG
* *
55653907 TGTAAGACCATGTCTGGGATGTTGGCAT
1 TGTAAGACC-CGTCTGGGACGTTGGCAT
55653935 TGTACGATAT
Statistics
Matches: 124, Mismatches: 21, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
41 22 0.18
42 20 0.16
43 81 0.65
44 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCCGTCTGGGACGTTGGCATCGATATGTGATTACG
Found at i:55654138 original size:18 final size:20
Alignment explanation
Indices: 55654107--55654147 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
55654097 ACAAATTATT
55654107 TATGATGCAAATGAAAA-TA
1 TATGATGCAAATGAAAAGTA
*
55654126 TATG-TGCATATGAAAAGTA
1 TATGATGCAAATGAAAAGTA
55654145 TAT
1 TAT
55654148 TAGGCCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (20 bp):
TATGATGCAAATGAAAAGTA
Found at i:55661307 original size:41 final size:40
Alignment explanation
Indices: 55661254--55661422 Score: 175
Period size: 41 Copynumber: 4.2 Consensus size: 40
55661244 AGTCCGACTC
*
55661254 TTAG-CACCGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
* * *
55661293 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGA
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACTAAGCTCGGA
* * *
55661333 TTATGACACTGGCTTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGC-TCAAAAGCCCTTCGAGACTAAGCTCGG--A
*
55661377 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
55661416 TTTAGAC
1 -TTAGAC
55661423 CCCGATTAGC
Statistics
Matches: 106, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
39 5 0.05
40 19 0.18
41 67 0.63
42 10 0.09
43 1 0.01
44 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
Found at i:55666982 original size:3 final size:3
Alignment explanation
Indices: 55666974--55666999 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
55666964 GGAGAGTGCA
55666974 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
55667000 AGAAATTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:55674984 original size:28 final size:29
Alignment explanation
Indices: 55674952--55675050 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
55674942 ATAATAAGCC
*
55674952 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
55674980 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
55675008 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
55675037 CGCACACTTAGTGC
1 CGCACACTTAGTGC
55675051 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:55675124 original size:29 final size:29
Alignment explanation
Indices: 55675082--55675142 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
55675072 TTACACCCGC
55675082 ACACTTAGTGCCGAAACCAACAACTCAAT
1 ACACTTAGTGCCGAAACCAACAACTCAAT
55675111 ACACTTAGTGCCGAAACCAACAACTCAAT
1 ACACTTAGTGCCGAAACCAACAACTCAAT
55675140 ACA
1 ACA
55675143 TCTCACCTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.43, C:0.31, G:0.10, T:0.16
Consensus pattern (29 bp):
ACACTTAGTGCCGAAACCAACAACTCAAT
Found at i:55683027 original size:28 final size:29
Alignment explanation
Indices: 55682995--55683093 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
55682985 ATAATAAGCC
*
55682995 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
55683023 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
55683051 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
55683080 CGCACACTTAGTGC
1 CGCACACTTAGTGC
55683094 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:55685503 original size:49 final size:49
Alignment explanation
Indices: 55685443--55685657 Score: 358
Period size: 49 Copynumber: 4.4 Consensus size: 49
55685433 TACATATATG
* * * *
55685443 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
55685492 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
55685541 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
55685590 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
55685639 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
55685658 TAATGTAAAA
Statistics
Matches: 159, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 159 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:55685816 original size:37 final size:37
Alignment explanation
Indices: 55685766--55685843 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
55685756 GTTCCGAGTG
55685766 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
*
55685803 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
55685840 AGAC
1 AGAC
55685844 TTCTTTTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:55694148 original size:43 final size:42
Alignment explanation
Indices: 55694070--55694231 Score: 171
Period size: 42 Copynumber: 3.8 Consensus size: 42
55694060 TACCATACCA
* **** *
55694070 ATGCCATATCCCAGATATGGTCTTATATGGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* *
55694112 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * * * * *
55694155 ATGCCATATCACAGATATGGTCTTACGCGAAGTCGCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* *
55694197 ATGTCATATCCCAGATATGGTCTTACACATAATCT
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCT
55694232 TAGTAACCCT
Statistics
Matches: 96, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 62 0.65
43 34 0.35
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:55699201 original size:23 final size:23
Alignment explanation
Indices: 55699171--55699270 Score: 91
Period size: 23 Copynumber: 4.4 Consensus size: 23
55699161 CTGATGAACA
*
55699171 GTAAGCTCTATTGAGCTTAAATG
1 GTAAGCTCTATTGAGCTGAAATG
55699194 GTAAGCTCTATTGAGCTGAACA--
1 GTAAGCTCTATTGAGCTGAA-ATG
*
55699216 GTAAGCTCT-TTCAAGCT-AAATTG
1 GTAAGCTCTATT-GAGCTGAAA-TG
* * * *
55699239 ATAAGCTCAAATGAGCTGAAATA
1 GTAAGCTCTATTGAGCTGAAATG
55699262 GTAAGCTCT
1 GTAAGCTCT
55699271 TCCGAGCTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 14
0.73 0.11 0.17
Matches are distributed among these distances:
20 1 0.02
21 4 0.07
22 13 0.21
23 38 0.62
24 5 0.08
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAATG
Found at i:55699217 original size:45 final size:45
Alignment explanation
Indices: 55699165--55699271 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
55699155 CCTGTGCTGA
* * * *
55699165 TGAACAGTAAGCTCTATT-GAGCTTAAA-TGGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCT-TTCAAGC-TAAATTGATAAGCTCAAATGAGC
55699210 TGAACAGTAAGCTCTTTCAAGCTAAATTGATAAGCTCAAATGAGC
1 TGAACAGTAAGCTCTTTCAAGCTAAATTGATAAGCTCAAATGAGC
*
55699255 TGAAATAGTAAGCTCTT
1 TG-AACAGTAAGCTCTT
55699272 CCGAGCTGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
44 6 0.11
45 35 0.65
46 13 0.24
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.30
Consensus pattern (45 bp):
TGAACAGTAAGCTCTTTCAAGCTAAATTGATAAGCTCAAATGAGC
Found at i:55700231 original size:25 final size:27
Alignment explanation
Indices: 55700183--55700234 Score: 90
Period size: 25 Copynumber: 2.0 Consensus size: 27
55700173 CTTCCTTCAT
55700183 CTACAAGAATCTCTATTATTATAATCA
1 CTACAAGAATCTCTATTATTATAATCA
55700210 CTACAAGAATC-C-ATTATTATAATCA
1 CTACAAGAATCTCTATTATTATAATCA
55700235 AACTCGCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 13 0.52
26 1 0.04
27 11 0.44
ACGTcount: A:0.42, C:0.19, G:0.04, T:0.35
Consensus pattern (27 bp):
CTACAAGAATCTCTATTATTATAATCA
Found at i:55705462 original size:12 final size:12
Alignment explanation
Indices: 55705445--55705470 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
55705435 TTTTGACATT
55705445 TCAATTCGATAG
1 TCAATTCGATAG
55705457 TCAATTCGATAG
1 TCAATTCGATAG
55705469 TC
1 TC
55705471 TTCGGTCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (12 bp):
TCAATTCGATAG
Found at i:55709803 original size:37 final size:37
Alignment explanation
Indices: 55709750--55709827 Score: 129
Period size: 37 Copynumber: 2.1 Consensus size: 37
55709740 TTATTACGAA
55709750 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
* * *
55709787 GTCTTACCCGGTCATAATCTCCTCTCGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
55709824 GTCT
1 GTCT
55709828 CACCTGGAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.19, C:0.32, G:0.19, T:0.29
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:55709974 original size:40 final size:42
Alignment explanation
Indices: 55709936--55710022 Score: 102
Period size: 49 Copynumber: 1.9 Consensus size: 42
55709926 TTTTACATTA
*
55709936 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATT-----CA-C
55709984 GGCCATTAGGCCTTATCACATATACATACACTTTCACAT
1 -GCCATTAGGCCTTATCACATATACATACACTTTCACAT
55710023 ATACATACAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 37 1.00
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (42 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCAC
Found at i:55710022 original size:18 final size:18
Alignment explanation
Indices: 55709999--55710040 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
55709989 TTAGGCCTTA
55709999 TCACATATACATACACTT
1 TCACATATACATACACTT
55710017 TCACATATACATACACTT
1 TCACATATACATACACTT
55710035 TCACAT
1 TCACAT
55710041 TCACCACATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.38, C:0.29, G:0.00, T:0.33
Consensus pattern (18 bp):
TCACATATACATACACTT
Found at i:55710025 original size:67 final size:67
Alignment explanation
Indices: 55709950--55710089 Score: 271
Period size: 67 Copynumber: 2.1 Consensus size: 67
55709940 TTAGGCCTTA
*
55709950 TCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACAC
1 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACAC
55710015 TT
66 TT
55710017 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACAC
1 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACAC
55710082 TT
66 TT
55710084 TCACAT
1 TCACAT
55710090 TCACCACATC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 72 1.00
ACGTcount: A:0.33, C:0.31, G:0.06, T:0.31
Consensus pattern (67 bp):
TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACAC
TT
Found at i:55710145 original size:47 final size:47
Alignment explanation
Indices: 55710027--55710219 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
55710017 TCACATATAC
*
55710027 ATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACAT
55710074 ACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACAT
1 --ATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACAT
* *
55710123 ATACACTTTCACATTCATCACATTGGCCA-TACGGCCTTATCACACAT
1 ATACACTTTCACATTCACCACATCGGCCATTA-GGCCTTATCACACAT
* * * *
55710170 ATGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
1 ATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACAT
55710217 ATA
1 ATA
55710220 TGTATATCAT
Statistics
Matches: 136, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.01
47 87 0.64
48 1 0.01
49 46 0.34
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.30
Consensus pattern (47 bp):
ATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACAT
Found at i:55713797 original size:29 final size:29
Alignment explanation
Indices: 55713761--55713892 Score: 246
Period size: 29 Copynumber: 4.6 Consensus size: 29
55713751 TGTTGAAAAA
*
55713761 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
55713790 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
55713819 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
55713848 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
55713877 CTCGCACACATAGTGC
1 CTCGCACACATAGTGC
55713893 TCGGTTAACG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 101 1.00
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:55713913 original size:87 final size:87
Alignment explanation
Indices: 55713761--55713924 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 87
55713751 TGTTGAAAAA
*
55713761 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCAC
1 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACGGATCTCGCAC
*
55713826 ACATAGTGCCTCAATTACTGAT
66 ACACAGTGCCTCAATTACTGAT
* * ** *
55713848 CTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTG-CTCGGTTAACGGAAT-TTGC
1 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATT-ACGG-ATCTCGC
55713911 ACACACAGTGCCTC
64 ACACACAGTGCCTC
55713925 TAATCATTCG
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
86 5 0.07
87 61 0.90
88 2 0.03
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (87 bp):
CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACGGATCTCGCAC
ACACAGTGCCTCAATTACTGAT
Found at i:55716035 original size:37 final size:37
Alignment explanation
Indices: 55715982--55716067 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
55715972 TTATTACGAA
55715982 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
* *
55716019 GTCTTACCCGGTCATAATCTCCTCACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
55716056 GTCTCACCCGGA
1 GTCTTACCCGGA
55716068 ACATTTCCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:55716309 original size:47 final size:47
Alignment explanation
Indices: 55716167--55716383 Score: 310
Period size: 47 Copynumber: 4.5 Consensus size: 47
55716157 TTTTACATTA
*
55716167 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCAC--ACATATACACTTTCACATTCACCACATCG
* *
55716216 GCCATTTGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACACAT--ATACACTTTCACATTCACCACATCG
*
55716265 GCCATTAGGCCTTATCACACATATACACTTTCACATTCACCACATTG
1 GCCATTAGGCCTTATCACACATATACACTTTCACATTCACCACATCG
* * *
55716312 GCCA-TACGGCCTTATCACACATATGCACTTTCACATTCATCACATTG
1 GCCATTA-GGCCTTATCACACATATACACTTTCACATTCACCACATCG
*
55716359 GCCATTCGGCCTTATCACACATATA
1 GCCATTAGGCCTTATCACACATATA
55716384 TGTATATCAT
Statistics
Matches: 156, Mismatches: 8, Indels: 10
0.90 0.05 0.06
Matches are distributed among these distances:
46 2 0.01
47 91 0.58
48 1 0.01
49 62 0.40
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACACATATACACTTTCACATTCACCACATCG
Found at i:55719934 original size:42 final size:42
Alignment explanation
Indices: 55719887--55719966 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
55719877 TCACTTGATC
*
55719887 ATAATACACATATGTATATATTGTAACATCCCGATTTAGATT
1 ATAATACACATATGTATATATTGTAACAGCCCGATTTAGATT
*
55719929 ATAATACACATATGTATATATTGTAATAGCCCGATTTA
1 ATAATACACATATGTATATATTGTAACAGCCCGATTTA
55719967 AACCCTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.38
Consensus pattern (42 bp):
ATAATACACATATGTATATATTGTAACAGCCCGATTTAGATT
Found at i:55719955 original size:22 final size:22
Alignment explanation
Indices: 55719888--55719956 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
55719878 CACTTGATCA
55719888 TAATACACATATGTATATATTG
1 TAATACACATATGTATATATTG
* ** * *
55719910 TAACATC-CCGAT-T-TAGATTA
1 TAATA-CACATATGTATATATTG
55719930 TAATACACATATGTATATATTG
1 TAATACACATATGTATATATTG
55719952 TAATA
1 TAATA
55719957 GCCCGATTTA
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 1 0.03
20 12 0.36
21 2 0.06
22 17 0.52
23 1 0.03
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.39
Consensus pattern (22 bp):
TAATACACATATGTATATATTG
Found at i:55719976 original size:42 final size:42
Alignment explanation
Indices: 55719886--55719976 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
55719876 TTCACTTGAT
* * *
55719886 CATAATACACATATGTATATATTGTAACATCCCGATTTAGAT
1 CATAATACACATATGTATATATTGTAACAGCCCGATTTAAAC
* *
55719928 TATAATACACATATGTATATATTGTAATAGCCCGATTTAAAC
1 CATAATACACATATGTATATATTGTAACAGCCCGATTTAAAC
*
55719970 CCTAATA
1 CATAATA
55719977 GGAACGGTGG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (42 bp):
CATAATACACATATGTATATATTGTAACAGCCCGATTTAAAC
Found at i:55723480 original size:42 final size:43
Alignment explanation
Indices: 55723400--55723501 Score: 145
Period size: 42 Copynumber: 2.4 Consensus size: 43
55723390 CCAAGACGTA
* *
55723400 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGG
1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
*
55723443 GTCTTACACGAAATCAAATA-CGATGCCGA-TGTCCCAGACATG
1 GTCTTACACGAAATCAAATATCGATGCC-ACTGTCCCAGACAGG
55723485 GTCTTACACGTAAATCA
1 GTCTTACACG-AAATCA
55723502 TAAGTTGACT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
42 29 0.54
43 25 0.46
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
Found at i:55723500 original size:43 final size:43
Alignment explanation
Indices: 55723380--55723501 Score: 151
Period size: 43 Copynumber: 2.8 Consensus size: 43
55723370 AGCTGGTACA
* * * *
55723380 ATGCCAATGTCCAAGACGTAGTCTTACATGT-AATCAAATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
*
55723423 ATGCCACTGTCCCAGACAGGGTCTTACACG-AAATCAAATA-CG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
55723465 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCA
1 ATGCC-ATGTCCCAGACATGGTCTTACACGTAAATCA
55723502 TAAGTTGACT
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
42 30 0.43
43 39 0.57
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:55725148 original size:23 final size:23
Alignment explanation
Indices: 55725113--55725216 Score: 104
Period size: 23 Copynumber: 4.6 Consensus size: 23
55725103 TGAGTCGATG
*
55725113 AACAATAAGCTCTATTGAGCTGA
1 AACAGTAAGCTCTATTGAGCTGA
*
55725136 AACGGTAAGCTCTATTGAGCTG-
1 AACAGTAAGCTCTATTGAGCTGA
* *
55725158 AACAGTAAGATCTTTTGAGCT-A
1 AACAGTAAGCTCTATTGAGCTGA
* * * *
55725180 AATCGGTAAGCTCAAATGAGCCGA
1 AA-CAGTAAGCTCTATTGAGCTGA
*
55725204 AACAGTAATCTCT
1 AACAGTAAGCTCT
55725217 TCCGAGCTGT
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
22 20 0.31
23 41 0.64
24 3 0.05
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:55725176 original size:45 final size:45
Alignment explanation
Indices: 55725111--55725211 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 45
55725101 CCTGAGTCGA
* * * *
55725111 TGAACAATAAGCTCTATTGAGCTGAAA-CGGTAAGCTCTATTGAGC
1 TGAACAGTAAGATCTATTGAGCT-AAATCGGTAAGCTCAAATGAGC
*
55725156 TGAACAGTAAGATCTTTTGAGCTAAATCGGTAAGCTCAAATGAGC
1 TGAACAGTAAGATCTATTGAGCTAAATCGGTAAGCTCAAATGAGC
*
55725201 CGAAACAGTAA
1 TG-AACAGTAA
55725212 TCTCTTCCGA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 3 0.06
45 37 0.77
46 8 0.17
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (45 bp):
TGAACAGTAAGATCTATTGAGCTAAATCGGTAAGCTCAAATGAGC
Found at i:55728881 original size:27 final size:28
Alignment explanation
Indices: 55728825--55728894 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
55728815 AAACTTGTAC
*
55728825 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGATTGATCATAT
*
55728853 AGCACTAAGTGTGCGA-ATTGATTATAT
1 AGCACTAAGTGTGCGAGATTGATCATAT
55728880 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
55728895 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGATTGATCATAT
Found at i:55728905 original size:27 final size:27
Alignment explanation
Indices: 55728849--55728906 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
55728839 GAGTTTGATC
* * *
55728849 ATATAGCACTAAGTGTGCGAATTGATT
1 ATATAGCACTAAGTGTGCGAACTCACT
*
55728876 ATATAGCACTAAGTGTGCGGACTCACT
1 ATATAGCACTAAGTGTGCGAACTCACT
55728903 ATAT
1 ATAT
55728907 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAACTCACT
Found at i:55731150 original size:38 final size:39
Alignment explanation
Indices: 55731068--55731248 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
55731058 AATGTTCGAG
55731068 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
55731107 TGATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
55731145 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
55731184 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
55731224 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
55731249 TGTTTTGAAC
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:55731156 original size:77 final size:79
Alignment explanation
Indices: 55731068--55731248 Score: 249
Period size: 77 Copynumber: 2.3 Consensus size: 79
55731058 AATGTTCGAG
* *
55731068 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGTCCCGAAGGC
55731132 AATTG-GCGAGTTA
66 AATTGTGCGAGTTA
* *
55731145 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGTCCCGAAGGC
* *
55731210 ATTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
55731224 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
55731249 TGTTTTGAAC
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
77 51 0.56
78 13 0.14
79 19 0.21
80 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:55735468 original size:29 final size:29
Alignment explanation
Indices: 55735406--55735508 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
55735396 GTGACGAGAT
* * *
55735406 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
55735435 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
55735464 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
55735493 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
55735509 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 3 0.05
29 57 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:55744380 original size:27 final size:28
Alignment explanation
Indices: 55744324--55744393 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
55744314 AAACTTGTAC
55744324 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
55744352 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
55744379 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
55744394 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:55744404 original size:27 final size:27
Alignment explanation
Indices: 55744324--55744405 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
55744314 AAACTTGTAC
* *
55744324 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
55744352 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
55744379 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
55744406 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:55749708 original size:13 final size:13
Alignment explanation
Indices: 55749692--55749716 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55749682 TTTGCAGTAT
55749692 GTGTGAAAATTTC
1 GTGTGAAAATTTC
55749705 GTGTGAAAATTT
1 GTGTGAAAATTT
55749717 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:55750917 original size:42 final size:43
Alignment explanation
Indices: 55750871--55750967 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 43
55750861 ACCATGTCTG
** *
55750871 GGACATTGGCATCG-TATATGATTTCGTGTAAGACC-CTATATA
1 GGACATTGGCATCGATATATGATAACATGTAAGACCAC-ATATA
* * *
55750913 GGACAGTGGCATCGATATTTGATAACATGTAAGACCACATCTA
1 GGACATTGGCATCGATATATGATAACATGTAAGACCACATATA
*
55750956 GGACGTTGGCAT
1 GGACATTGGCAT
55750968 TGTACTAGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
42 13 0.29
43 31 0.69
44 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
GGACATTGGCATCGATATATGATAACATGTAAGACCACATATA
Found at i:55750966 original size:43 final size:42
Alignment explanation
Indices: 55750811--55750967 Score: 106
Period size: 43 Copynumber: 3.7 Consensus size: 42
55750801 TGTGATTTCG
* * *
55750811 TGTAAGACCAAATCTGGGACGTTGGCATCG-ATTTGA-AATTTA
1 TGTAAGACCACATCTAGGACGTTGGCATCGTATTTGATAA--CA
* ** * * * ** *
55750853 TGTGTAAAACCATGTCTGGGACATTGGCATCGTATATGATTTCG
1 --TGTAAGACCACATCTAGGACGTTGGCATCGTATTTGATAACA
*
55750897 TGTAAGACC-CTATATAGGACAG-TGGCATCGATATTTGATAACA
1 TGTAAGACCAC-ATCTAGGAC-GTTGGCATCG-TATTTGATAACA
55750940 TGTAAGACCACATCTAGGACGTTGGCAT
1 TGTAAGACCACATCTAGGACGTTGGCAT
55750968 TGTACTAGTT
Statistics
Matches: 86, Mismatches: 20, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
42 23 0.27
43 31 0.36
44 27 0.31
45 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACATCTAGGACGTTGGCATCGTATTTGATAACA
Found at i:55751736 original size:21 final size:24
Alignment explanation
Indices: 55751691--55751740 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
55751681 GAGACAAATG
*
55751691 AATTGGTATGCTTTTAGTCTATGA
1 AATTGGTATGCTTTTAGTATATGA
55751715 AATTGGTATGC-TTT-G-ATATGA
1 AATTGGTATGCTTTTAGTATATGA
55751736 AATTG
1 AATTG
55751741 ATTGGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 10 0.40
22 1 0.04
23 3 0.12
24 11 0.44
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (24 bp):
AATTGGTATGCTTTTAGTATATGA
Found at i:55757227 original size:40 final size:40
Alignment explanation
Indices: 55757168--55757309 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
55757158 AAATTGAATG
* * *
55757168 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
55757208 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
55757248 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
55757288 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
55757310 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:55757333 original size:40 final size:39
Alignment explanation
Indices: 55757206--55757335 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
55757196 ATGCTGGAAA
* * *
55757206 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
55757247 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
55757285 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
55757326 TTATATCCGG
1 TTATATCCGG
55757336 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:55761378 original size:25 final size:24
Alignment explanation
Indices: 55761350--55761401 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 24
55761340 CCAAAGATAG
55761350 CTTCCTTACTTCCCACTCATTATAA
1 CTTCCTTACTTCCCACTCATT-TAA
*
55761375 CTTCCTTGCTTCCCACTCATTTAA
1 CTTCCTTACTTCCCACTCATTTAA
55761399 CTT
1 CTT
55761402 ATTTTGAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.19, C:0.37, G:0.02, T:0.42
Consensus pattern (24 bp):
CTTCCTTACTTCCCACTCATTTAA
Found at i:55762344 original size:34 final size:34
Alignment explanation
Indices: 55762301--55762369 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
55762291 TTTGCCGAAC
55762301 TAGGGAACAAACTGAAGCACCAACAATATCTCAA
1 TAGGGAACAAACTGAAGCACCAACAATATCTCAA
55762335 TAGGGAACAAACTGAAGCACCAACAATATCTCAA
1 TAGGGAACAAACTGAAGCACCAACAATATCTCAA
55762369 T
1 T
55762370 TTGACTGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.46, C:0.23, G:0.14, T:0.16
Consensus pattern (34 bp):
TAGGGAACAAACTGAAGCACCAACAATATCTCAA
Found at i:55776069 original size:28 final size:27
Alignment explanation
Indices: 55776006--55776075 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
55775996 ATAGTGAGTC
55776006 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
55776033 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
55776061 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
55776076 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:55784098 original size:28 final size:27
Alignment explanation
Indices: 55784035--55784104 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
55784025 ATAGTGAGTC
55784035 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
55784062 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
55784090 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
55784105 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:55787638 original size:38 final size:38
Alignment explanation
Indices: 55787590--55787788 Score: 269
Period size: 38 Copynumber: 5.3 Consensus size: 38
55787580 GGCTCAAAGG
* * *
55787590 CCCGAATATAATACCAGCACTAGGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
* *
55787628 CCCGGATATAATACCAGCACGAAACCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
*
55787666 CCCGGATATAATACCAGCA-TGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
** *
55787704 CCCAAATATAATA-CAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
55787741 CCCGGATATAATACCAGCA-TGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
*
55787779 CCTGGATATA
1 CCCGGATATA
55787789 CATCGAATAT
Statistics
Matches: 141, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
37 32 0.23
38 109 0.77
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
Found at i:55787788 original size:75 final size:76
Alignment explanation
Indices: 55787590--55787788 Score: 303
Period size: 75 Copynumber: 2.6 Consensus size: 76
55787580 GGCTCAAAGG
* * *
55787590 CCCGAATATAATACCAGCACT-AGGCCTGCGAGATTTAACCCGGATATAATACCAGCACGAAACC
1 CCCGGATATAATACCAGCA-TGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAACC
55787654 TGCGGGATTTAA
65 TGCGGGATTTAA
* ** *
55787666 CCCGGATATAATACCAGCATGAAGCCTGTGGGATTTAACCCAAATATAATA-CAGCACGAAGCCT
1 CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAACCT
55787730 GCGGGATTTAA
66 GCGGGATTTAA
*
55787741 CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAACCTGGATATA
1 CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGGATATA
55787789 CATCGAATAT
Statistics
Matches: 111, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
75 68 0.61
76 43 0.39
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (76 bp):
CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAACCT
GCGGGATTTAA
Found at i:55794875 original size:40 final size:40
Alignment explanation
Indices: 55794811--55794923 Score: 138
Period size: 40 Copynumber: 2.9 Consensus size: 40
55794801 GCTACTCGTT
* * * ***
55794811 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
55794851 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
55794891 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
55794924 TTCGCACATT
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 18 0.29
40 45 0.71
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.20
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:55802771 original size:39 final size:39
Alignment explanation
Indices: 55802690--55802852 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
55802680 TATGGTAACC
* *
55802690 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
55802730 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
55802769 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
55802808 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
55802847 CGCACA
1 CGCACA
55802853 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:55806111 original size:27 final size:26
Alignment explanation
Indices: 55806071--55806212 Score: 194
Period size: 27 Copynumber: 5.2 Consensus size: 26
55806061 AGGAAGCGTC
*
55806071 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
55806098 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
55806125 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
55806152 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
55806179 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
55806207 CTGGTG
1 CTGGTG
55806213 ACTGTCATAT
Statistics
Matches: 103, Mismatches: 7, Indels: 9
0.87 0.06 0.08
Matches are distributed among these distances:
26 4 0.04
27 88 0.85
28 11 0.11
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:55806153 original size:54 final size:54
Alignment explanation
Indices: 55806071--55806212 Score: 257
Period size: 54 Copynumber: 2.6 Consensus size: 54
55806061 AGGAAGCGTC
*
55806071 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
55806125 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
55806179 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTG
1 CTGGTGGCTATGCCACGATTATCTG-ATCTGGTG
55806213 ACTGTCATAT
Statistics
Matches: 85, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
54 77 0.91
55 8 0.09
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:55809270 original size:14 final size:14
Alignment explanation
Indices: 55809233--55809264 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
55809223 GTCAATTTCA
*
55809233 TATTTAATATTTAG
1 TATTTAGTATTTAG
55809247 TATTTAGTATTTAG
1 TATTTAGTATTTAG
55809261 TATT
1 TATT
55809265 ATGTATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (14 bp):
TATTTAGTATTTAG
Found at i:55809329 original size:241 final size:237
Alignment explanation
Indices: 55808853--55809336 Score: 787
Period size: 241 Copynumber: 2.0 Consensus size: 237
55808843 TATTTAAATA
* *
55808853 GGTGGAACCATTTGTTGAGTTACGGGGGAATACCTATTGCTCTTGAAGATATACGACTTCTATTA
1 GGTGGAACCATTTGTTGAGTTACGAGGGAATACCTACTGCTCTTGAAGATATACGACTTCTATTA
55808918 GACCAACGGTTGGAAGCGCATGTAAGTATTTATTTCATTTTGAACTATATATACACATAACACAG
66 GACCAACGGTTGGAAGCGCATGTAAGTATTTATTTCATTTTGAACTATATATACACATAACACAG
55808983 TCAATTTCATATTTAATATTTAGTATTTAGTATTATGTATATAACTAATATTTTTATCACGTTTA
131 TCAATTTCATATTTAATATTTAGTATTTAGTATTATGTATATAACTAATATTTTTATCACGTTTA
55809048 TATAGTTTTATGGAAACCATACGAGGATTCGGCAATTCGGCAATTC
196 TATAGTTTTATGGAAACCATACGA-GA-T-GG-AATTCGGCAATTC
*
55809094 GGTGGAACCATTTGTTGAGTTACGAGGGAATACCTACTGCTCTTGAAGATATACGGCTTCTATTA
1 GGTGGAACCATTTGTTGAGTTACGAGGGAATACCTACTGCTCTTGAAGATATACGACTTCTATTA
*
55809159 GACCAATGGTTGGAAGCGCATGTAAGTATTTATTTCATTTTGAACTATATATACACATAACACAG
66 GACCAACGGTTGGAAGCGCATGTAAGTATTTATTTCATTTTGAACTATATATACACATAACACAG
55809224 TCAATTTCATATTTAATATTTAGTATTTAGTATTTAGTATTATGTATATAACTAATATTTTTATC
131 TCAATTTCATA-TT--TA---A-TATTTAGTATTTAGTATTATGTATATAACTAATATTTTTATC
*
55809289 ATGTTTATATAGTTTTAATGGAAACCATAC-A-A-GG-ATTCGGCAATTC
189 ACGTTTATATAGTTTT-ATGGAAACCATACGAGATGGAATTCGGCAATTC
55809335 GG
1 GG
55809337 GCAGTAAATA
Statistics
Matches: 230, Mismatches: 5, Indels: 16
0.92 0.02 0.06
Matches are distributed among these distances:
241 151 0.66
242 2 0.01
243 2 0.01
244 2 0.01
246 1 0.00
247 1 0.00
248 58 0.25
249 13 0.06
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (237 bp):
GGTGGAACCATTTGTTGAGTTACGAGGGAATACCTACTGCTCTTGAAGATATACGACTTCTATTA
GACCAACGGTTGGAAGCGCATGTAAGTATTTATTTCATTTTGAACTATATATACACATAACACAG
TCAATTTCATATTTAATATTTAGTATTTAGTATTATGTATATAACTAATATTTTTATCACGTTTA
TATAGTTTTATGGAAACCATACGAGATGGAATTCGGCAATTC
Found at i:55811316 original size:20 final size:20
Alignment explanation
Indices: 55811260--55811337 Score: 72
Period size: 20 Copynumber: 4.0 Consensus size: 20
55811250 AAAATATAAA
55811260 ATATTAAAAATTATATAAAAT
1 ATATTAAAAATTATA-AAAAT
**
55811281 -TCGTAATAAA-TATAAAAAT
1 ATATTAA-AAATTATAAAAAT
*
55811300 ATATTAAAAATTATAAAATT
1 ATATTAAAAATTATAAAAAT
* *
55811320 TTA-TAAAAATCATAAAAA
1 ATATTAAAAATTATAAAAA
55811338 ATTATAAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
19 21 0.46
20 22 0.48
21 3 0.07
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.35
Consensus pattern (20 bp):
ATATTAAAAATTATAAAAAT
Found at i:55811327 original size:29 final size:28
Alignment explanation
Indices: 55811245--55811348 Score: 88
Period size: 29 Copynumber: 3.6 Consensus size: 28
55811235 TTAAATTTTA
* *
55811245 ATTAAAAAATATAAAATATTAAAAAT-T
1 ATTAAAAATTATAAAATTTTAAAAATAT
* * *
55811272 A-TATAAAATTCGTAATAAATATAAAAATAT
1 ATTA-AAAATT-ATAA-AATTTTAAAAATAT
55811302 ATTAAAAATTATAAAATTTTATAAAA-AT
1 ATTAAAAATTATAAAATTTTA-AAAATAT
*
55811330 CATAAAAAATTATAAAATT
1 -ATTAAAAATTATAAAATT
55811349 GCATAAAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
26 2 0.03
27 6 0.10
28 10 0.16
29 33 0.54
30 8 0.13
31 2 0.03
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (28 bp):
ATTAAAAATTATAAAATTTTAAAAATAT
Found at i:55811344 original size:10 final size:10
Alignment explanation
Indices: 55811265--55811346 Score: 62
Period size: 10 Copynumber: 8.3 Consensus size: 10
55811255 ATAAAATATT
55811265 AAAAATTATA
1 AAAAATTATA
* *
55811275 TAAAATTCGTA
1 AAAAATT-ATA
*
55811286 ATAAA-TAT-
1 AAAAATTATA
*
55811294 AAAAATATATT
1 AAAAAT-TATA
55811305 AAAAATTATA
1 AAAAATTATA
**
55811315 AAATTTTAT-
1 AAAAATTATA
*
55811324 AAAAATCATA
1 AAAAATTATA
55811334 AAAAATTATA
1 AAAAATTATA
55811344 AAA
1 AAA
55811347 TTGCATAAAA
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
8 4 0.07
9 7 0.13
10 32 0.59
11 11 0.20
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.33
Consensus pattern (10 bp):
AAAAATTATA
Found at i:55811354 original size:29 final size:29
Alignment explanation
Indices: 55811292--55811357 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 29
55811282 CGTAATAAAT
**
55811292 ATAAAAATATATTAAAAATTATAAAATTTT
1 ATAAAAATATA-TAAAAATTATAAAATTGC
55811322 ATAAAAATCATA-AAAAATTATAAAATTGC
1 ATAAAAAT-ATATAAAAATTATAAAATTGC
55811351 ATAAAAA
1 ATAAAAA
55811358 ATGCCCTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 22 0.67
30 8 0.24
31 3 0.09
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.32
Consensus pattern (29 bp):
ATAAAAATATATAAAAATTATAAAATTGC
Found at i:55811356 original size:19 final size:19
Alignment explanation
Indices: 55811244--55811359 Score: 73
Period size: 19 Copynumber: 6.2 Consensus size: 19
55811234 ATTAAATTTT
55811244 AATTA-AAAAAT-ATAAAA
1 AATTATAAAAATCATAAAA
* * *
55811261 TA-T-TAAAAATTATATAA
1 AATTATAAAAATCATAAAA
*
55811278 AATTCGTAATAAAT-AT-AAA
1 AATT-ATAA-AAATCATAAAA
*
55811297 AATATATTAAAAATTATAAAA
1 AAT-TA-TAAAAATCATAAAA
**
55811318 TTTTATAAAAATCATAAAA
1 AATTATAAAAATCATAAAA
*
55811337 AATTATAAAATTGCATAAAA
1 AATTATAAAAAT-CATAAAA
55811357 AAT
1 AAT
55811360 GCCCTTTAGT
Statistics
Matches: 77, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
16 7 0.09
17 7 0.09
18 1 0.01
19 31 0.40
20 23 0.30
21 8 0.10
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.33
Consensus pattern (19 bp):
AATTATAAAAATCATAAAA
Found at i:55811700 original size:10 final size:10
Alignment explanation
Indices: 55811632--55811705 Score: 50
Period size: 10 Copynumber: 7.8 Consensus size: 10
55811622 ATTTTGCAAT
55811632 TTTTTA-TAA
1 TTTTTATTAA
55811641 TTTTTAATTAA
1 TTTTT-ATTAA
55811652 -TTTTA--AA
1 TTTTTATTAA
*
55811659 TTTTAATTAA
1 TTTTTATTAA
** * *
55811669 AATTTAATCA
1 TTTTTATTAA
55811679 TTTTTA-TAA
1 TTTTTATTAA
*
55811688 TTTTTATTGA
1 TTTTTATTAA
55811698 TTTTTATT
1 TTTTTATT
55811706 TTTTACCATT
Statistics
Matches: 49, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
7 2 0.04
8 4 0.08
9 14 0.29
10 26 0.53
11 3 0.06
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTTATTAA
Found at i:55821314 original size:33 final size:33
Alignment explanation
Indices: 55821257--55821323 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
55821247 TAAACATTAC
* *
55821257 ATAAATGTTAAAATAATTATATATAAAATTTTA
1 ATAAATGTAAAAATAATTAAATATAAAATTTTA
* *
55821290 ATAAAT-TAAAAATAATATAAATATATATTTTTA
1 ATAAATGTAAAAATAAT-TAAATATAAAATTTTA
55821323 A
1 A
55821324 ATTTATATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 9 0.31
33 20 0.69
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (33 bp):
ATAAATGTAAAAATAATTAAATATAAAATTTTA
Found at i:55825495 original size:26 final size:27
Alignment explanation
Indices: 55825458--55825514 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
55825448 TGATTGGTTG
55825458 AATTGTTAAAATTTAAAAAATTATTTT
1 AATTGTTAAAATTTAAAAAATTATTTT
55825485 AATT-TTAAAATTTAAAAAATTATTTT
1 AATTGTTAAAATTTAAAAAATTATTTT
55825511 AATT
1 AATT
55825515 ATTTAATTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (27 bp):
AATTGTTAAAATTTAAAAAATTATTTT
Found at i:55825598 original size:14 final size:14
Alignment explanation
Indices: 55825576--55825614 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
55825566 TGAACCATAA
*
55825576 AATAATATATTATT
1 AATAATATAATATT
*
55825590 AATATTATAATATT
1 AATAATATAATATT
55825604 -ATAATATAATA
1 AATAATATAATA
55825615 ATAAAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AATAATATAATATT
Found at i:55825602 original size:8 final size:8
Alignment explanation
Indices: 55825582--55825617 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
55825572 ATAAAATAAT
55825582 ATATTATTA
1 ATATTA-TA
55825591 ATATTATA
1 ATATTATA
55825599 ATATTATA
1 ATATTATA
*
55825607 ATATAATA
1 ATATTATA
55825615 ATA
1 ATA
55825618 AAAATCATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
8 20 0.77
9 6 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
ATATTATA
Found at i:55825677 original size:21 final size:22
Alignment explanation
Indices: 55825643--55825699 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 22
55825633 TATATTTATT
*
55825643 TATTATTTACTATTATTAAATA
1 TATTTTTTACTATTATTAAATA
* **
55825665 TATTTTTTA-TATTCTTACTTA
1 TATTTTTTACTATTATTAAATA
55825686 TA-TTTTT-CTATTAT
1 TATTTTTTACTATTAT
55825700 GTTATATGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
20 10 0.34
21 11 0.38
22 8 0.28
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTTTTTACTATTATTAAATA
Found at i:55836686 original size:39 final size:39
Alignment explanation
Indices: 55836632--55836709 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
55836622 TTAATACATC
55836632 TTATACATATACACTACATCAATTACACCATTTCATTCA
1 TTATACATATACACTACATCAATTACACCATTTCATTCA
*
55836671 TTATATATATACACTACATCAATTACACCATTTCATTCA
1 TTATACATATACACTACATCAATTACACCATTTCATTCA
55836710 AACACACAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.37
Consensus pattern (39 bp):
TTATACATATACACTACATCAATTACACCATTTCATTCA
Found at i:55840896 original size:56 final size:57
Alignment explanation
Indices: 55840762--55840904 Score: 171
Period size: 57 Copynumber: 2.5 Consensus size: 57
55840752 CTATTAGCAT
* * * * * **
55840762 ATACCAATTTCACATAATTCATTCCTATATCAAATTCTATTATCAATCCATAAGTTC
1 ATACCAAATTCACATAATTCATTTCAATTTTAAATTCTATTATCAATCCATAAACTC
* *
55840819 ATACCAATTTCACATAATTCATTTTAATTTTAAATTCTATTATCAAT-CATAAACTC
1 ATACCAAATTCACATAATTCATTTCAATTTTAAATTCTATTATCAATCCATAAACTC
* * *
55840875 ATACTAAATTCACGTATTTCATTTCAATTT
1 ATACCAAATTCACATAATTCATTTCAATTT
55840905 CATACTCCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
56 32 0.43
57 42 0.57
ACGTcount: A:0.37, C:0.20, G:0.01, T:0.42
Consensus pattern (57 bp):
ATACCAAATTCACATAATTCATTTCAATTTTAAATTCTATTATCAATCCATAAACTC
Found at i:55840917 original size:56 final size:57
Alignment explanation
Indices: 55840762--55840919 Score: 156
Period size: 56 Copynumber: 2.8 Consensus size: 57
55840752 CTATTAGCAT
* * * * * * **
55840762 ATACCAATTTCACATAATTCATTCCTATATCAAATTCTATTATCAATCCATAAGTTC
1 ATACCAAATTCACATAATTCATTTCAATTTCAAACTCCATTATCAATCCATAAACTC
* * * * *
55840819 ATACCAATTTCACATAATTCATTTTAATTTTAAATTCTATTATCAAT-CATAAACTC
1 ATACCAAATTCACATAATTCATTTCAATTTCAAACTCCATTATCAATCCATAAACTC
* * * *
55840875 ATACTAAATTCACGTATTTCATTTCAATTTCATACTCCATTATCA
1 ATACCAAATTCACATAATTCATTTCAATTTCAAACTCCATTATCA
55840920 TTTTATAAGA
Statistics
Matches: 85, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
56 43 0.51
57 42 0.49
ACGTcount: A:0.37, C:0.21, G:0.01, T:0.41
Consensus pattern (57 bp):
ATACCAAATTCACATAATTCATTTCAATTTCAAACTCCATTATCAATCCATAAACTC
Found at i:55841354 original size:38 final size:38
Alignment explanation
Indices: 55841312--55841390 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
55841302 AATCGGTTAC
55841312 TTCACATTTTTACATCCTAAATCATTCACATTCACATA
1 TTCACATTTTTACATCCTAAATCATTCACATTCACATA
55841350 TTCACATTTTTACATCCTAAATCATTCACATTCACATA
1 TTCACATTTTTACATCCTAAATCATTCACATTCACATA
55841388 TTC
1 TTC
55841391 TGTGACAGCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.41
Consensus pattern (38 bp):
TTCACATTTTTACATCCTAAATCATTCACATTCACATA
Found at i:55843107 original size:40 final size:40
Alignment explanation
Indices: 55843049--55843216 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
55843039 CAATTGAATG
* *
55843049 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
55843090 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
55843129 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
55843169 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
55843209 ATATCCGG
1 ATATCCGG
55843217 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:55843187 original size:80 final size:79
Alignment explanation
Indices: 55843049--55843216 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
55843039 CAATTGAATG
* * *
55843049 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
55843114 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
55843129 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
55843193 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
55843209 ATATCCGG
1 ATATCCGG
55843217 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:55851112 original size:40 final size:40
Alignment explanation
Indices: 55851054--55851221 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
55851044 CAATTGAATG
* *
55851054 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
55851095 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
55851134 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
55851174 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
55851214 ATATCCGG
1 ATATCCGG
55851222 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:55851192 original size:80 final size:79
Alignment explanation
Indices: 55851054--55851221 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
55851044 CAATTGAATG
* * *
55851054 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
55851119 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
55851134 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
55851198 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
55851214 ATATCCGG
1 ATATCCGG
55851222 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:55856184 original size:40 final size:40
Alignment explanation
Indices: 55856082--55856231 Score: 169
Period size: 40 Copynumber: 3.8 Consensus size: 40
55856072 AAATTGAATG
* * * * *
55856082 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
55856122 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
55856162 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
55856202 AAATCCGGGCTAAGACCCGAAGGCATTTGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGT
55856232 CCAAATCGTG
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 88 0.94
41 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:55856248 original size:40 final size:38
Alignment explanation
Indices: 55856078--55856265 Score: 155
Period size: 40 Copynumber: 4.8 Consensus size: 38
55856068 TGAGAAATTG
* * *
55856078 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
55856118 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
55856155 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
55856195 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTCCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
55856235 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
55856266 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 4 0.03
40 109 0.91
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:55858555 original size:5 final size:5
Alignment explanation
Indices: 55858547--55858577 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
55858537 GTTTCATTTA
*
55858547 AATTC AATTC AATTC AATTC AATCC AATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC A
55858578 TATATATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (5 bp):
AATTC
Found at i:55861489 original size:43 final size:43
Alignment explanation
Indices: 55861440--55861525 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
55861430 TATGTGATTG
55861440 ATATTGAAATGGA-AAAGATGAGAAATGAA-TATGAGATGAGAAA
1 ATATTGAAAT-GACAAAGATGAGAAAT-AATTATGAGATGAGAAA
*
55861483 ATATTGAAATGACAAATATGAGAAATAATTATGAGATGAGAAA
1 ATATTGAAATGACAAAGATGAGAAATAATTATGAGATGAGAAA
55861526 TTAAATATGA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
42 4 0.10
43 36 0.90
ACGTcount: A:0.53, C:0.01, G:0.22, T:0.23
Consensus pattern (43 bp):
ATATTGAAATGACAAAGATGAGAAATAATTATGAGATGAGAAA
Found at i:55861523 original size:18 final size:19
Alignment explanation
Indices: 55861500--55861540 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
55861490 AATGACAAAT
* *
55861500 ATGAGAAA-TAATTATGAG
1 ATGAGAAATTAAATATGAA
55861518 ATGAGAAATTAAATATGAA
1 ATGAGAAATTAAATATGAA
55861537 ATGA
1 ATGA
55861541 TGAATTGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.27
Consensus pattern (19 bp):
ATGAGAAATTAAATATGAA
Found at i:55862837 original size:15 final size:15
Alignment explanation
Indices: 55862794--55862843 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 15
55862784 CTGCCATTGC
55862794 ATATTATAATGTTATT
1 ATATTAT-ATGTTATT
55862810 AGTTAGTTTATATGTTATT
1 A--TA--TTATATGTTATT
55862829 ATATTATATGTTATT
1 ATATTATATGTTATT
55862844 CGTTAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 2 0.07
18 2 0.07
19 9 0.30
20 4 0.13
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (15 bp):
ATATTATATGTTATT
Found at i:55864537 original size:118 final size:118
Alignment explanation
Indices: 55864315--55864636 Score: 493
Period size: 118 Copynumber: 2.7 Consensus size: 118
55864305 CACAAATATG
* *
55864315 AAACT-ATTTGACTAGTAATAATCCCAAATAAGGTTAGCCCTTAATTTGCTGAGTGTTCAAATTT
1 AAACTGATTTGACTAGTAATAATCACAAATAAGGTTAGCACTTAATTTGCTGAGTGTTCAAATTT
* *
55864379 ACATATGAATTCTATGAAAATCACAAATATGAAAATAAATCAGTGCCAATTGC
66 ACATATGAATTCTATGAAAATCACAAATATAAAAAGAAATCAGTGCCAATTGC
* *
55864432 AAAGTGATTTGACTAGTAATAATCACAAATAAGGTTAGCACTTAATTTACTGAGTGTTCAAATTT
1 AAACTGATTTGACTAGTAATAATCACAAATAAGGTTAGCACTTAATTTGCTGAGTGTTCAAATTT
55864497 ACATATGAATTCTATGAAAATCACAAATATAAAAAGAAATCAGTGCCAATTGC
66 ACATATGAATTCTATGAAAATCACAAATATAAAAAGAAATCAGTGCCAATTGC
* * * * * * *
55864550 AAACTGATTTGACTAATAGTAATCACAAATAAGGTCAGCACTTAGCAGTTGGTGAATGTTTAAAT
1 AAACTGATTTGACTAGTAATAATCACAAATAAGGTTAGCACTTA--ATTTGCTGAGTGTTCAAAT
*
55864615 TTACATACGAATTCTATGAAAA
64 TTACATATGAATTCTATGAAAA
55864637 GCATGAAGAA
Statistics
Matches: 186, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
117 4 0.02
118 147 0.79
120 35 0.19
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (118 bp):
AAACTGATTTGACTAGTAATAATCACAAATAAGGTTAGCACTTAATTTGCTGAGTGTTCAAATTT
ACATATGAATTCTATGAAAATCACAAATATAAAAAGAAATCAGTGCCAATTGC
Found at i:55867363 original size:18 final size:17
Alignment explanation
Indices: 55867340--55867377 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
55867330 TCCAAATACC
55867340 AAAAAAAAACAAAAAACA
1 AAAAAAAAACAAAAAA-A
55867358 AAAAAAAAACAAAAAAA
1 AAAAAAAAACAAAAAAA
55867375 AAA
1 AAA
55867378 CCTTTGACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAAAACAAAAAAA
Found at i:55867364 original size:11 final size:11
Alignment explanation
Indices: 55867340--55867378 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
55867330 TCCAAATACC
*
55867340 AAAAAA-AAAC
1 AAAAAACAAAA
55867350 AAAAAACAAAA
1 AAAAAACAAAA
55867361 AAAAAACAAAA
1 AAAAAACAAAA
55867372 AAAAAAC
1 AAAAAAC
55867379 CTTTGACAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 6 0.22
11 21 0.78
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAACAAAA
Done.