Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 203 of 345
Found at i:58277160 original size:11 final size:10
Alignment explanation
Indices: 58277137--58277183 Score: 58
Period size: 11 Copynumber: 4.4 Consensus size: 10
58277127 TCATTGAATC
*
58277137 TTTTTTTTTA
1 TTTTATTTTA
58277147 TTTTATTCTTA
1 TTTTATT-TTA
58277158 TTTTTATTTTA
1 -TTTTATTTTA
58277169 TTTTATTTTTA
1 TTTTA-TTTTA
58277180 TTTT
1 TTTT
58277184 TCTTTTGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
10 11 0.33
11 15 0.45
12 7 0.21
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:58277167 original size:22 final size:21
Alignment explanation
Indices: 58277137--58277195 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 21
58277127 TCATTGAATC
58277137 TTTTTTTTTATTTTATTCTTA
1 TTTTTTTTTATTTTATTCTTA
*
58277158 TTTTTATTTTATTTTATTTTTA
1 TTTTT-TTTTATTTTATTCTTA
58277180 TTTTTCTTTTGATTTT
1 TTTTT-TTTT-ATTTT
58277196 TATTTTCACT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 5 0.15
22 24 0.71
23 5 0.15
ACGTcount: A:0.14, C:0.03, G:0.02, T:0.81
Consensus pattern (21 bp):
TTTTTTTTTATTTTATTCTTA
Found at i:58277196 original size:7 final size:6
Alignment explanation
Indices: 58277137--58277201 Score: 75
Period size: 6 Copynumber: 11.5 Consensus size: 6
58277127 TCATTGAATC
*
58277137 TTTT-T TTTTA- TTTTAT TCTTAT TTTTA- TTTTA- TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* *
58277181 TTTTCT TTTGAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTT
58277202 CACTTCAATT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
5 19 0.37
6 32 0.63
ACGTcount: A:0.14, C:0.03, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:58277201 original size:5 final size:5
Alignment explanation
Indices: 58277137--58277183 Score: 58
Period size: 5 Copynumber: 8.8 Consensus size: 5
58277127 TCATTGAATC
*
58277137 TTTTT TTTTA TTTTA TTCTTA TTTTTA TTTTA TTTTA TTTTTA TTTT
1 TTTTA TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA -TTTTA TTTT
58277184 TCTTTTGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
5 25 0.66
6 11 0.29
7 2 0.05
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:58277202 original size:17 final size:16
Alignment explanation
Indices: 58277137--58277201 Score: 87
Period size: 17 Copynumber: 3.9 Consensus size: 16
58277127 TCATTGAATC
58277137 TTTT-TTTTTATTTTA
1 TTTTATTTTTATTTTA
58277152 TTCTTATTTTTATTTTA
1 TT-TTATTTTTATTTTA
*
58277169 TTTTATTTTTATTTTTC
1 TTTTATTTTTA-TTTTA
58277186 TTTTGATTTTTATTTT
1 TTTT-ATTTTTATTTT
58277202 CACTTCAATT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
15 2 0.04
16 11 0.24
17 25 0.56
18 7 0.16
ACGTcount: A:0.14, C:0.03, G:0.02, T:0.82
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:58287789 original size:20 final size:20
Alignment explanation
Indices: 58287764--58287815 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
58287754 AAATAATTTA
*
58287764 ACACGGGCGTGTCACTAAGT
1 ACACGGGCGTGTCACTAAGC
58287784 ACACGGGCGTGTCACTAAGC
1 ACACGGGCGTGTCACTAAGC
*
58287804 ACACAGGCGTGT
1 ACACGGGCGTGT
58287816 GCTTTGCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.27, G:0.31, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCACTAAGC
Found at i:58288213 original size:9 final size:9
Alignment explanation
Indices: 58288196--58288232 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
58288186 TAAGTTTTCG
58288196 AATTCGAAT
1 AATTCGAAT
*
58288205 AACTCGAAT
1 AATTCGAAT
*
58288214 AATTCAAAT
1 AATTCGAAT
58288223 AATTCGAAT
1 AATTCGAAT
58288232 A
1 A
58288233 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:58292707 original size:40 final size:40
Alignment explanation
Indices: 58292605--58292788 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
58292595 AAATTGAATG
* * * * *
58292605 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
58292645 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
58292685 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
58292725 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
58292765 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
58292789 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:58300828 original size:40 final size:40
Alignment explanation
Indices: 58300726--58300909 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
58300716 AAATTGAATG
* * * * *
58300726 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
58300766 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
58300806 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
58300846 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
58300886 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
58300910 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:58305361 original size:2 final size:2
Alignment explanation
Indices: 58305354--58305380 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
58305344 CAACATGATC
58305354 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
58305381 CACATTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:58314455 original size:40 final size:39
Alignment explanation
Indices: 58314410--58314536 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
58314400 CGGAACATAA
58314410 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
58314450 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
58314490 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
58314530 CCGGATA
1 CCGGATA
58314537 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58314554 original size:40 final size:40
Alignment explanation
Indices: 58314426--58314576 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
58314416 ATAACCATGT
* * *
58314426 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
58314466 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
58314506 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
58314546 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
58314577 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:58314560 original size:80 final size:80
Alignment explanation
Indices: 58314426--58314575 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
58314416 ATAACCATGT
* *
58314426 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
58314490 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
58314506 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
58314569 CCCGGAT
64 CCCGGAT
58314576 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:58318630 original size:28 final size:28
Alignment explanation
Indices: 58318569--58318666 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
58318559 TCACAAATTG
** * *
58318569 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
58318598 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
58318626 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
58318654 GCACTAAGTGTGC
1 GCACTAAGTGTGC
58318667 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:58334610 original size:28 final size:28
Alignment explanation
Indices: 58334549--58334646 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
58334539 TCACAAATTG
** * *
58334549 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
58334578 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
58334606 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
58334634 GCACTAAGTGTGC
1 GCACTAAGTGTGC
58334647 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:58346010 original size:40 final size:39
Alignment explanation
Indices: 58345965--58346091 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
58345955 CGGAACATAA
58345965 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
58346005 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
58346045 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
58346085 CCGGATA
1 CCGGATA
58346092 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:58346109 original size:40 final size:40
Alignment explanation
Indices: 58345981--58346131 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
58345971 ATAACCATGT
* * *
58345981 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
58346021 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
58346061 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
58346101 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
58346132 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:58346115 original size:80 final size:80
Alignment explanation
Indices: 58345981--58346130 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
58345971 ATAACCATGT
* *
58345981 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
58346045 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
58346061 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
58346124 CCCGGAT
64 CCCGGAT
58346131 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:58350187 original size:28 final size:28
Alignment explanation
Indices: 58350126--58350223 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
58350116 TCACAAATTG
** * *
58350126 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
58350155 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
58350183 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
58350211 GCACTAAGTGTGC
1 GCACTAAGTGTGC
58350224 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:58357857 original size:28 final size:28
Alignment explanation
Indices: 58357796--58357893 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
58357786 TCACAAATTG
** * *
58357796 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
58357825 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
58357853 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
58357881 GCACTAAGTGTGC
1 GCACTAAGTGTGC
58357894 GGGCTTATGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:58362000 original size:18 final size:19
Alignment explanation
Indices: 58361979--58362017 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
58361969 TTTCATTAAG
58361979 TTTTTAAGACTCATTT-TT
1 TTTTTAAGACTCATTTGTT
*
58361997 TTTTTAAGATTCATTTGTT
1 TTTTTAAGACTCATTTGTT
58362016 TT
1 TT
58362018 CCTTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.21, C:0.08, G:0.08, T:0.64
Consensus pattern (19 bp):
TTTTTAAGACTCATTTGTT
Found at i:58368554 original size:25 final size:25
Alignment explanation
Indices: 58368508--58368574 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
58368498 TCATATTCAT
*
58368508 GTATGCTCATACGAGTTATGAATCA
1 GTATGCTCATACGAGCTATGAATCA
*
58368533 GTATGCTC-TCACGAGCTGTGAAT-A
1 GTATGCTCAT-ACGAGCTATGAATCA
* *
58368557 GGGAAGCTCATACGAGCT
1 -GTATGCTCATACGAGCT
58368575 GTGGTGTGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
24 2 0.06
25 32 0.91
26 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATGAATCA
Found at i:58372144 original size:38 final size:38
Alignment explanation
Indices: 58372093--58372169 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
58372083 ACGATGGACA
58372093 AGAGGCATTGTTTACGTCGTGTCACTCATCTTCTAATC
1 AGAGGCATTGTTTACGTCGTGTCACTCATCTTCTAATC
58372131 AGAGGCATTGTTTACGTCGTGTCACTCATCTTCTAATC
1 AGAGGCATTGTTTACGTCGTGTCACTCATCTTCTAATC
58372169 A
1 A
58372170 AACCATTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (38 bp):
AGAGGCATTGTTTACGTCGTGTCACTCATCTTCTAATC
Found at i:58383312 original size:31 final size:31
Alignment explanation
Indices: 58383270--58383335 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
58383260 AGGCCCCGAG
* * *
58383270 ATATGTTGGTTGTGTTCGGAGGGTAATAGTT
1 ATATATTGGTTGTGTTCGGAGGGTAAAAGCT
*
58383301 ATATATTGGTTGTGTTTGGAGGGTAAAAGCT
1 ATATATTGGTTGTGTTCGGAGGGTAAAAGCT
58383332 ATAT
1 ATAT
58383336 GCTGATTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.24, C:0.03, G:0.32, T:0.41
Consensus pattern (31 bp):
ATATATTGGTTGTGTTCGGAGGGTAAAAGCT
Found at i:58385059 original size:47 final size:46
Alignment explanation
Indices: 58384990--58385260 Score: 196
Period size: 47 Copynumber: 5.8 Consensus size: 46
58384980 GGTAAGGTGC
*
58384990 CGATGCCATGTCCCAGACATGGTATTACACTGGCTCATATCTCAAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGT
* *
58385037 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCTAG-
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
* * * ** ** *
58385083 CTGATGCATCTCCCAGACAT-GTCTTATACTGGCTTACGTCTTGAGG
1 C-GATGCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGT
* * * * * * *
58385129 CTGATGCATGTCCCAAACAT-GTCTCATACTAGCTCTTGTTTCAATGT
1 C-GATGCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA-GT
* * * *
58385176 CAATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT--GGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGG--CTCAT-ATCTCAAGT
*
58385224 CGATGCATGTCCCAAACAT-GTCTTACACTGGCTCATA
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCATA
58385261 AATAAATGAC
Statistics
Matches: 181, Mismatches: 33, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 5 0.03
45 17 0.09
46 66 0.36
47 72 0.40
48 14 0.08
50 4 0.02
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGT
Found at i:58385256 original size:46 final size:47
Alignment explanation
Indices: 58384988--58385257 Score: 150
Period size: 46 Copynumber: 5.8 Consensus size: 47
58384978 TGGGTAAGGT
*
58384988 GCCGATGCCATGTCCCAGACATGGTATTACACTGGCTCATATC-TCAA-GT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TA-CAT-AATGTG
* * * * *
58385037 --CGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CAT-CTCTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATAATGTG
* * * * ** *
58385082 GCTGATGCATCTCCCAGACATGTCTTATACTGGCT-TACGTCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATAATGTG
* * * * * ***
58385128 GCTGATGCATGTCCCAAACATGTCTCATACTAGCTCTTGTTTCAATGT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC-TACAT-AATGTG
*
58385176 --CAATGTCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATAATGTG
*
58385222 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
58385258 ATAAATAAAT
Statistics
Matches: 172, Mismatches: 34, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
44 3 0.02
45 20 0.12
46 65 0.38
47 64 0.37
48 18 0.10
49 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATAATGTG
Found at i:58391695 original size:12 final size:12
Alignment explanation
Indices: 58391678--58391709 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
58391668 ACCACAACAC
58391678 GCCCGTGTCCTA
1 GCCCGTGTCCTA
58391690 GCCCGTGTCCTA
1 GCCCGTGTCCTA
*
58391702 CCCCGTGT
1 GCCCGTGT
58391710 GCAAAAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.44, G:0.25, T:0.25
Consensus pattern (12 bp):
GCCCGTGTCCTA
Found at i:58392738 original size:46 final size:46
Alignment explanation
Indices: 58392650--58392826 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
58392640 GTAAGGTGTT
* * * * * *
58392650 GATGCCATGTCCCAGATATGGTCTTACATTGACTATCATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTATACTGGCTCTCGTCTCG-AGGCC
*
58392698 GATGCATGTCCCAGACATGTCTTATACTGGCT-TACGTCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTATACTGGCTCT-CGTCTCGAGGCC
* * * *
58392744 GATGCATGTCCCAGACATGTCTTATACTAGCTCTCGTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTATACTGGCTCTCGTCTCGAGGCC
* *
58392790 GATGCCATATCCCAGACATGGTCTTACACTGGCTCTC
1 GATG-CATGTCCCAGACAT-GTCTTATACTGGCTCTC
58392827 ATAATGTGGT
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
45 2 0.02
46 62 0.56
47 27 0.25
48 19 0.17
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTATACTGGCTCTCGTCTCGAGGCC
Found at i:58393167 original size:17 final size:17
Alignment explanation
Indices: 58393145--58393179 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
58393135 ACAATTTTTG
*
58393145 ATCTATATTAGCAAAAT
1 ATCTATATTAGAAAAAT
58393162 ATCTATATTAGAAAAAT
1 ATCTATATTAGAAAAAT
58393179 A
1 A
58393180 CACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (17 bp):
ATCTATATTAGAAAAAT
Found at i:58410043 original size:27 final size:26
Alignment explanation
Indices: 58409999--58410050 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58409989 CTCGCTGCAA
*
58409999 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
58410026 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
58410051 GCAGTCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:58410159 original size:27 final size:26
Alignment explanation
Indices: 58410107--58410166 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
58410097 ATATATATAT
*
58410107 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
58410133 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
58410160 ATATCTG
1 ATATCTG
58410167 GCAGCCTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:58411399 original size:43 final size:42
Alignment explanation
Indices: 58411341--58411743 Score: 486
Period size: 43 Copynumber: 9.4 Consensus size: 42
58411331 GTTTTGTGGA
* * * * *
58411341 AAAAAACACAGCTAAAGACCAGGACTTTTAGCGGCACTTATAT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTT-TAT
*
58411384 AAAAAACGCCGCTAAAGACCATGACTTATAGCTGCGC-TTAT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTAT
* * * *
58411425 ATAAAAGCGCCGCTAAAGACCAGGACTTATAGCGGCACTTTTCT
1 A-AAAAACGCCGCTAAAGACCATGACTTATAGCGGCGC-TTTAT
*
58411469 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCTT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTT-AT
*
58411512 AAAAAACGCCGCTAAAGACCATGACTTATAGCTGCGCTTATAT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTT-TAT
* * *
58411555 AAAAAGCGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTCT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGC-TTTAT
* ** *
58411598 AAAAAATGCCGCTAAAGACCATGACTTATAGTAGCGCTTTCTT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTT-AT
*
58411641 AAAAAACGCCGCTAAAGACCATGACTTCTAGCGGCGCTTGCT-T
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTT--TAT
* * *
58411684 AAAAAACGCCGCTAAAGACCATGACTTCTAGCGGTGCTTTCTT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTT-AT
58411727 AAAAAAACGCCGCTAAA
1 -AAAAAACGCCGCTAAA
58411744 AGTCTTCTTC
Statistics
Matches: 316, Mismatches: 32, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
41 5 0.02
42 39 0.12
43 248 0.78
44 23 0.07
45 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.22
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTAT
Found at i:58411598 original size:129 final size:129
Alignment explanation
Indices: 58411341--58411743 Score: 589
Period size: 129 Copynumber: 3.1 Consensus size: 129
58411331 GTTTTGTGGA
* * * * * *
58411341 AAAAAACACAGCTAAAGACCAGGACTTTTAGCGGCACTTAT-ATAAAAAACGCCGCTAAAGACCA
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTT-TCTTAAAAAACGCCGCTAAAGACCA
*
58411405 TGACTTATAGCTGCGCTTATAT-AAAAGCGCCGCTAAAGACCAGGACTTATAGCGGCACTTTTCT
65 TGACTTATAGCTGCGCTTATATAAAAAGCGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTCT
58411469 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCTTAAAAAACGCCGCTAAAGACCAT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCTTAAAAAACGCCGCTAAAGACCAT
58411534 GACTTATAGCTGCGCTTATATAAAAAGCGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTCT
66 GACTTATAGCTGCGCTTATATAAAAAGCGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTCT
* **
58411598 AAAAAATGCCGCTAAAGACCATGACTTATAGTAGCGCTTTCTTAAAAAACGCCGCTAAAGACCAT
1 AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCTTAAAAAACGCCGCTAAAGACCAT
* * * * * * *
58411663 GACTTCTAGCGGCGCTTGCT-TAAAAAACGCCGCTAAAGACCATGACTTCTAGCGGTGC-TTTCT
66 GACTTATAGCTGCGCTT-ATATAAAAAGCGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTC-
58411726 T
129 T
58411727 AAAAAAACGCCGCTAAA
1 -AAAAAACGCCGCTAAA
58411744 AGTCTTCTTC
Statistics
Matches: 252, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
127 1 0.00
128 82 0.33
129 153 0.61
130 16 0.06
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.22
Consensus pattern (129 bp):
AAAAAACGCCGCTAAAGACCATGACTTATAGCGGCGCTTTCTTAAAAAACGCCGCTAAAGACCAT
GACTTATAGCTGCGCTTATATAAAAAGCGCCGCTAAAGACCAGGACTTATAGCGGCGCTTTTCT
Found at i:58411775 original size:44 final size:44
Alignment explanation
Indices: 58411631--58411828 Score: 142
Period size: 43 Copynumber: 4.6 Consensus size: 44
58411621 ACTTATAGTA
* * * *
58411631 GCGCTTTCTT-AAAAAACGCCGCT-AAAGACCAT-GACTTCTAGCG
1 GCGCTTTTTTAAAAAAACGCCACTAAAAGTCC-TCGTCTT-TAGCG
** * * *
58411674 GCGCTTGCTT-AAAAAACGCCGCT-AAAGACCAT-GACTTCTAGCG
1 GCGCTTTTTTAAAAAAACGCCACTAAAAGTCC-TCGTCTT-TAGCG
* * * * * *
58411717 GTGCTTTCTTAAAAAAACGCCGCTAAAAGTCTTCTTCTTTAGTG
1 GCGCTTTTTTAAAAAAACGCCACTAAAAGTCCTCGTCTTTAGCG
* *
58411761 GCG-TTTTTTAAAAAAGCGCCACTAAAAGTCCTGGTCTTTAGCG
1 GCGCTTTTTTAAAAAAACGCCACTAAAAGTCCTCGTCTTTAGCG
*
58411804 GTGCTTTTTT-AAAAAACGCCACTAA
1 GCGCTTTTTTAAAAAAACGCCACTAA
58411829 TTTGCCCAGT
Statistics
Matches: 133, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
43 99 0.74
44 26 0.20
45 8 0.06
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (44 bp):
GCGCTTTTTTAAAAAAACGCCACTAAAAGTCCTCGTCTTTAGCG
Found at i:58412150 original size:21 final size:21
Alignment explanation
Indices: 58412126--58412167 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
58412116 GTTCTGCTCT
58412126 ACCTCCCTCGCTGCTGCCTCC
1 ACCTCCCTCGCTGCTGCCTCC
58412147 ACCTCCCTCGCTGCTGCCTCC
1 ACCTCCCTCGCTGCTGCCTCC
58412168 GCTCTGAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.05, C:0.57, G:0.14, T:0.24
Consensus pattern (21 bp):
ACCTCCCTCGCTGCTGCCTCC
Found at i:58415530 original size:12 final size:12
Alignment explanation
Indices: 58415513--58415538 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
58415503 GTCATCCTCC
58415513 TCATCAGATTCA
1 TCATCAGATTCA
58415525 TCATCAGATTCA
1 TCATCAGATTCA
58415537 TC
1 TC
58415539 CCTCGATCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:58417381 original size:9 final size:9
Alignment explanation
Indices: 58417367--58417522 Score: 141
Period size: 9 Copynumber: 16.3 Consensus size: 9
58417357 TACATGTATT
58417367 AGTTATGTA
1 AGTTATGTA
58417376 AGTTATTATGTA
1 AG---TTATGTA
* *
58417388 CGTTATGTG
1 AGTTATGTA
58417397 AGTTATGTA
1 AGTTATGTA
*
58417406 AATTATGTA
1 AGTTATGTA
58417415 AGTTATGTA
1 AGTTATGTA
58417424 AGTTGTTATGTA
1 A---GTTATGTA
*
58417436 AATTATGTA
1 AGTTATGTA
*
58417445 AGTTATGTG
1 AGTTATGTA
58417454 AGTTATGTA
1 AGTTATGTA
58417463 AGTTGTTATGTA
1 A---GTTATGTA
*
58417475 AATTATGTA
1 AGTTATGTA
* *
58417484 AGTTATATG
1 AGTTATGTA
58417493 AGTTATGTA
1 AGTTATGTA
58417502 AGTTATGTA
1 AGTTATGTA
* *
58417511 ATTTATTTA
1 AGTTATGTA
58417520 AGT
1 AGT
58417523 AATGATCAAT
Statistics
Matches: 119, Mismatches: 19, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
9 93 0.78
12 26 0.22
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
AGTTATGTA
Found at i:58417403 original size:30 final size:30
Alignment explanation
Indices: 58417367--58417522 Score: 146
Period size: 30 Copynumber: 5.4 Consensus size: 30
58417357 TACATGTATT
* *
58417367 AGTTATGTAAGTTATTATGTACGTTATGTG
1 AGTTATGTAAGTTATTATGTAAGTTATGTA
58417397 AGTTATGTAA---ATTATGTAAGTTATGTA
1 AGTTATGTAAGTTATTATGTAAGTTATGTA
* * * *
58417424 AGTTGT-TATGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGT-TATTATGTAAGTTATGTA
* *
58417454 AGTTATGTAAGTTGTTATGTAAATTATGTA
1 AGTTATGTAAGTTATTATGTAAGTTATGTA
* *
58417484 AGTTATATGAG---TTATGTAAGTTATGTA
1 AGTTATGTAAGTTATTATGTAAGTTATGTA
* *
58417511 ATTTATTTAAGT
1 AGTTATGTAAGT
58417523 AATGATCAAT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.02
27 43 0.42
30 54 0.52
31 4 0.04
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.47
Consensus pattern (30 bp):
AGTTATGTAAGTTATTATGTAAGTTATGTA
Found at i:58417413 original size:39 final size:36
Alignment explanation
Indices: 58417369--58417522 Score: 149
Period size: 39 Copynumber: 4.3 Consensus size: 36
58417359 CATGTATTAG
58417369 TTATGTAAGTTATTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTAAGTTA-TATG-A-GTTATGTGAGTTATGTAAA
* *
58417408 TTATGTAAG-T-TAT--G-TAAGT-TGTTATGTAAA
1 TTATGTAAGTTATATGAGTTATGTGAGTTATGTAAA
* *
58417438 TTATGTAAGTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTTATATGAGTTATGT--G-AGTTATGTAAA
* *
58417477 TTATGTAAGTTATATGAGTTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATGAGTTATGTGAGTTATGTAAA
*
58417513 TTATTTAAGT
1 TTATGTAAGT
58417523 AATGATCAAT
Statistics
Matches: 97, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
30 19 0.20
31 5 0.05
32 3 0.03
34 1 0.01
35 4 0.04
36 21 0.22
38 1 0.01
39 43 0.44
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (36 bp):
TTATGTAAGTTATATGAGTTATGTGAGTTATGTAAA
Found at i:58417433 original size:48 final size:48
Alignment explanation
Indices: 58417367--58417522 Score: 188
Period size: 48 Copynumber: 3.2 Consensus size: 48
58417357 TACATGTATT
* *
58417367 AGTTATGTAAGTTATTATGTACGTTATGTGAGTTATGTAAATTATGTA
1 AGTTATGTAAGTTATTATGTAAGTTATGTGAGTTATGTAAGTTATGTA
* * * *
58417415 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTGAGTTATGTA
1 AGTTATGTAAGTTATTATGTAAGTTATGTGAGTTATGTAAGTTATGTA
* * * *
58417463 AGTTGT-TATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTA
1 AGTTATGTAAGT-TATTATGTAAGTTATGTGAGTTATGTAAGTTATGTA
* *
58417511 ATTTATTTAAGT
1 AGTTATGTAAGT
58417523 AATGATCAAT
Statistics
Matches: 89, Mismatches: 17, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
47 4 0.04
48 81 0.91
49 4 0.04
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.47
Consensus pattern (48 bp):
AGTTATGTAAGTTATTATGTAAGTTATGTGAGTTATGTAAGTTATGTA
Found at i:58422385 original size:28 final size:27
Alignment explanation
Indices: 58422333--58422385 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
58422323 GGTCTCTCTA
*
58422333 ATATATTTAAATTTTAGATTTATTTGC
1 ATATATTTAAATTTTAGATTCATTTGC
*
58422360 ATATACTTTAATTTTTA-ATATCATTT
1 ATATA-TTTAAATTTTAGAT-TCATTT
58422386 AGTCTATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
ATATATTTAAATTTTAGATTCATTTGC
Found at i:58422823 original size:21 final size:21
Alignment explanation
Indices: 58422799--58422838 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
58422789 GGGTTTTATG
*
58422799 GTTTTGGATTGAAGATTTAAT
1 GTTTAGGATTGAAGATTTAAT
* *
58422820 GTTTAGGGTTTAAGATTTA
1 GTTTAGGATTGAAGATTTA
58422839 CAATTTAAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (21 bp):
GTTTAGGATTGAAGATTTAAT
Found at i:58430708 original size:29 final size:29
Alignment explanation
Indices: 58430652--58430708 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
58430642 AACCAACAGA
* **
58430652 ATTTTTTTTTACTTTTTTCTTTTCTTTTC
1 ATTTTTTTGTACTTTTTTCACTTCTTTTC
58430681 ATTTTTTTGTACTTTTTATCACTT-TTTT
1 ATTTTTTTGTACTTTTT-TCACTTCTTTT
58430709 GTGGAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.11, C:0.12, G:0.02, T:0.75
Consensus pattern (29 bp):
ATTTTTTTGTACTTTTTTCACTTCTTTTC
Found at i:58432950 original size:93 final size:93
Alignment explanation
Indices: 58432791--58432961 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
58432781 CCGCCCATAA
* *
58432791 ACGAACTCGGACTCAACTCAACGAGCTCGGGCATCCGCATCCATAAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTC
*
58432856 AATGAGTTCGGATCCCTAGTTACATCTC
66 AACGAGTTCGGATCCCTAGTTACATCTC
* * *
58432884 ACGAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTC
58432949 AACGAGTTCGGAT
66 AACGAGTTCGGAT
58432962 GCTCAACCAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
ACGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTC
AACGAGTTCGGATCCCTAGTTACATCTC
Found at i:58432960 original size:46 final size:46
Alignment explanation
Indices: 58432793--58432960 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
58432783 GCCCATAAAC
* * *
58432793 GAACTCGGACTCAACTCAACGAGCTCGGGCATCCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
* * * *
58432839 GAACTCGGACTCAACTCAATGAGTTCGGATCCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
*
58432886 GAACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
*
58432932 GAACTCAGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
58432961 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 53 0.54
47 27 0.27
48 2 0.02
49 2 0.02
50 4 0.04
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:58433244 original size:31 final size:31
Alignment explanation
Indices: 58433206--58433269 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
58433196 AAAATAACAA
58433206 TTATGCTACTTTATTTACACATGAACTTACC
1 TTATGCTACTTTATTTACACATGAACTTACC
58433237 TTATGCTACTTTATTTACACATGAACTTACC
1 TTATGCTACTTTATTTACACATGAACTTACC
58433268 TT
1 TT
58433270 GGTACCAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (31 bp):
TTATGCTACTTTATTTACACATGAACTTACC
Found at i:58438131 original size:28 final size:29
Alignment explanation
Indices: 58438064--58438164 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
58438054 ATAGTGAATC
* *
58438064 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTGTATA-ATTCAAACT
58438093 CGCACACTTAGTGCTGTATAA-TCAAACT
1 CGCACACTTAGTGCTGTATAATTCAAACT
* * *
58438121 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTGTATAA-TTCAAACT
58438151 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58438165 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 19 0.30
30 19 0.30
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTGTATAATTCAAACT
Found at i:58446179 original size:29 final size:27
Alignment explanation
Indices: 58446146--58446244 Score: 94
Period size: 30 Copynumber: 3.5 Consensus size: 27
58446136 ATAGTGAATC
*
58446146 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCT-TATA-A-TCAAACT
58446175 CGCACACTTAGTGC-TATAATCAAACT
1 CGCACACTTAGTGCTTATAATCAAACT
* * *
58446201 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCT-TATAA--TCAAACT
58446231 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58446245 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
25 2 0.03
26 18 0.30
27 4 0.07
28 4 0.07
29 14 0.23
30 19 0.31
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:58446209 original size:26 final size:27
Alignment explanation
Indices: 58446146--58446215 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 27
58446136 ATAGTGAATC
*
58446146 CGCACACTTAGTGCTATATACATTCAGCT
1 CGCACACTTAGTGCTATATACA-T-AACT
58446175 CGCACACTTAGTGCTATA-ATCA-AACT
1 CGCACACTTAGTGCTATATA-CATAACT
58446201 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58446216 GTACAATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
26 18 0.46
28 1 0.03
29 20 0.51
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATACATAACT
Found at i:58448465 original size:46 final size:49
Alignment explanation
Indices: 58448339--58448473 Score: 167
Period size: 46 Copynumber: 2.9 Consensus size: 49
58448329 CTCGGGTGTC
*
58448339 CGCATCCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATCCCTAGTT
1 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTT
* * *
58448390 -ACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TT
1 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT
58448432 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
58448474 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 2 0.03
46 29 0.40
47 28 0.38
48 2 0.03
49 1 0.01
50 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (49 bp):
CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT
Found at i:58448492 original size:46 final size:44
Alignment explanation
Indices: 58448349--58448492 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
58448339 CGCATCCATA
*
58448349 AGTGAACTCGGACTCAACTCAACAAGTTCGGATCCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATCCC-A---ACCATCT
* * * *
58448396 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--A-TCCCAACCATCT
*
58448442 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAT-CCCAACCAT-CT
58448488 AGTGA
1 AGTGA
58448493 CATGTCACTT
Statistics
Matches: 79, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
43 1 0.01
44 8 0.10
45 1 0.01
46 33 0.42
47 30 0.38
48 1 0.01
49 2 0.03
50 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATCCCAACCATCT
Found at i:58452015 original size:28 final size:27
Alignment explanation
Indices: 58451952--58452021 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
58451942 ATAGTGAGTC
58451952 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
58451979 AGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
58452007 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58452022 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:58465165 original size:21 final size:21
Alignment explanation
Indices: 58465141--58465183 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
58465131 AAAATTTAAA
58465141 AAAACATAA-TAAAATATTTTT
1 AAAA-ATAAGTAAAATATTTTT
* *
58465162 AAAATTAAGTATAATATTTTT
1 AAAAATAAGTAAAATATTTTT
58465183 A
1 A
58465184 TTAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAAATAAGTAAAATATTTTT
Found at i:58465432 original size:25 final size:26
Alignment explanation
Indices: 58465394--58465442 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
58465384 AAATAGATAT
*
58465394 AATATGAATTTATTTTATA-ATGTGA
1 AATATGAATTTATTTAATACATGTGA
58465419 AATAT-AATTATATTTAATACATGT
1 AATATGAATT-TATTTAATACATGT
58465443 TATATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 13 0.62
26 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (26 bp):
AATATGAATTTATTTAATACATGTGA
Found at i:58470647 original size:70 final size:71
Alignment explanation
Indices: 58470558--58470720 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
58470548 CGATTTGTCT
58470558 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
58470623 CTTTCA
66 CTTTCA
58470629 CGTAG-TCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
58470693 CTTTCA
66 CTTTCA
58470699 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
58470721 AATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
70 70 0.77
71 21 0.23
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:58472174 original size:50 final size:51
Alignment explanation
Indices: 58472058--58472284 Score: 154
Period size: 50 Copynumber: 4.6 Consensus size: 51
58472048 CTGGTACGCA
* *** ** *
58472058 TAGTAGCCTACACTTAGTACTACACATGCGACC-AA-TTATCCGG-TACATG
1 TAGTAGCCTGCACTTAGTACTACACACATGACCGAAGCCAT-CGGATACACG
* * *
58472107 TAGTAGTCTGCACTTAGTACTACACACATGACCTAA-CCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACCGAAGCCATCGGATACACG
* * * ** * * *
58472157 TAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACATGACCGAAGCCATCGGATACACG
**
58472208 TAGTAGCCTGCACTTAGTACT--ACACAT-A-C--A-TTATCCGG-TACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACCGAAGCCAT-CGGATACACG
* *
58472252 TAGTAGCCTGCACTTAGTATTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACATGACC
58472285 TCACAATAGA
Statistics
Matches: 144, Mismatches: 26, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
44 28 0.19
45 4 0.03
46 5 0.03
47 2 0.01
48 2 0.01
49 35 0.24
50 40 0.28
51 28 0.19
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACCGAAGCCATCGGATACACG
Found at i:58472225 original size:101 final size:93
Alignment explanation
Indices: 58472058--58472284 Score: 247
Period size: 95 Copynumber: 2.4 Consensus size: 93
58472048 CTGGTACGCA
* * * ** *
58472058 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
58472123 GTACTACACACATGACCTAACCATCTGATACACG
66 GTACT--ACACAT-A-C--ACCATCCGATACACG
* * * *
58472157 TAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
** *
58472222 TAGTACTACACATACATTATCCGGTACACG
64 TAGTACTACACATACACCATCCGATACACG
*
58472252 TAGTAGCCTGCACTTAGTATTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
58472285 TCACAATAGA
Statistics
Matches: 109, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
94 1 0.01
95 40 0.37
97 1 0.01
98 1 0.01
99 33 0.30
100 3 0.03
101 30 0.28
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (93 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACATACACCATCCGATACACG
Found at i:58472257 original size:44 final size:47
Alignment explanation
Indices: 58472058--58472277 Score: 221
Period size: 51 Copynumber: 4.6 Consensus size: 47
58472048 CTGGTACGCA
* *
58472058 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACAT--GACCAATTATCCGGTACACG
* ** * *
58472107 TAGTAGTCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACT--ACACATGACC-AATTATCCGGTACACG
* * * * *
58472157 TAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACA--TGA-CCAA-TTATCCGGTACACG
58472208 TAGTAGCCTGCACTTAGTACTACACAT-A-C-ATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGACCAATTATCCGGTACACG
*
58472252 TAGTAGCCTGCACTTAGTATTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
58472278 CGTGACCTCA
Statistics
Matches: 142, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
44 36 0.25
45 1 0.01
48 6 0.04
49 24 0.17
50 35 0.25
51 40 0.28
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (47 bp):
TAGTAGCCTGCACTTAGTACTACACATGACCAATTATCCGGTACACG
Found at i:58478971 original size:40 final size:40
Alignment explanation
Indices: 58478875--58479027 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
58478865 CGAATGGTAT
* * * *
58478875 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
58478916 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
58478956 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
58478996 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
58479028 CGCTATATCC
Statistics
Matches: 92, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
40 67 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:58486855 original size:40 final size:40
Alignment explanation
Indices: 58486759--58486911 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
58486749 CGAATGGTAT
* * * *
58486759 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
58486800 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
58486840 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
58486880 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
58486912 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:58492656 original size:55 final size:54
Alignment explanation
Indices: 58492550--58492755 Score: 238
Period size: 55 Copynumber: 3.8 Consensus size: 54
58492540 TAGGGTTTAC
* *
58492550 GGATACCATGTAAGACCATGCCAAGAAATGGCAATTGGTAAGGTT-TCTAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGCAA
* * * *
58492605 GGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC-AA
* * * * *
58492661 GG-TCCCACGTATGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAA
* *
58492713 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
58492756 TCAAAAGAAT
Statistics
Matches: 125, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 4 0.03
53 43 0.34
54 8 0.06
55 66 0.53
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAA
Found at i:58492976 original size:16 final size:16
Alignment explanation
Indices: 58492955--58492985 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58492945 ATAAATTTGA
58492955 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
58492971 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
58492986 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:58504716 original size:48 final size:49
Alignment explanation
Indices: 58504597--58504916 Score: 293
Period size: 48 Copynumber: 6.6 Consensus size: 49
58504587 ATACTAGGGT
* * *
58504597 TATGTGAG-CTAGTGTAAGACCATGTTTGGGACATGACATCGGCACCAAT-A
1 TATGAGAGCCTAGTGTAAGACCATGTTTGGGACATGGCATCGG---CATTGA
* * * *
58504647 TATGAGAGCC-AGTGTCAGACCATGTTTGGAACATGGCATCGGTATTTA
1 TATGAGAGCCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
* * * * *
58504695 TATGAGAGCCTA-TGTAAGACCATGTCTGGGACATAGCATTGACCTTGA
1 TATGAGAGCCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
* * * *
58504743 TATGTAGA--CTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA
1 TATG-AGAGCCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
* * *
58504791 TATGTG-GGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGGC-TCGA
1 TATGAGAGCCTAGTGTAAGACCATGTTTGGGACATGGCATC-GGCATTGA
* * *
58504839 TATGTG-GGCTAGTGTAAGACCATGTTTGGAACATGGCAAT-GGCATTGATA
1 TATGAGAGCCTAGTGTAAGACCATGTTTGGGACATGGC-ATCGGCATTG--A
58504889 TATGAGAGCC-AGTGTAAGACCATGTTTG
1 TATGAGAGCCTAGTGTAAGACCATGTTTG
58504917 AAACATGACA
Statistics
Matches: 232, Mismatches: 25, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
47 9 0.04
48 151 0.65
49 9 0.04
50 60 0.26
51 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (49 bp):
TATGAGAGCCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA
Found at i:58514348 original size:48 final size:48
Alignment explanation
Indices: 58514233--58514519 Score: 299
Period size: 48 Copynumber: 5.9 Consensus size: 48
58514223 ATACTAGGGT
* *
58514233 TATGTGAGCCATTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TG-A
* * * * * *
58514283 TATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGTATTTA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * *
58514331 TATGAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCGGCCTTGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * *
58514379 TGTTTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATTGG-ACTTGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TTGA
* * * * *
58514427 TATGTGGGCTAGTGTAAGACCATGTCTGGGACATTGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * *
58514475 TATGTGGGCTAGTGTAAGACCATGT-TTGGAGCATGACATCGGCAT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGA-CATGGCATCGGCAT
58514520 CTTACCCTTT
Statistics
Matches: 201, Mismatches: 33, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
47 4 0.02
48 158 0.79
50 39 0.19
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
Found at i:58514442 original size:96 final size:96
Alignment explanation
Indices: 58514233--58514516 Score: 336
Period size: 96 Copynumber: 2.9 Consensus size: 96
58514223 ATACTAGGGT
* * * * *
58514233 TATGTGAGCCATTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTATATGAGAGCCAGTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATATG-G-GCTAGTGT
* * *
58514298 AAGACTATGTTTGGAACATGGCATCGGTATTTA
64 AAGACCATGTCTGGAACATGGCATCGGTATTGA
* * * *
58514331 TATGAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCGGCCTTGATGTTTGGGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATATGGGCTAGTGTAA
* *
58514396 GACCATGTCTGGGACATGGCATTGG-ACTTGA
66 GACCATGTCTGGAACATGGCATCGGTA-TTGA
* * * * *
58514427 TATGTGGGCTAGTGTAAGACCATGTCTGGGACATTGCATCGGCCTCGATATGTGGGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATATGGGCTAGTGTAA
* * *
58514492 GACCATGTTTGGAGCATGACATCGG
66 GACCATGTCTGGAACATGGCATCGG
58514517 CATCTTACCC
Statistics
Matches: 158, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
95 1 0.01
96 110 0.70
97 1 0.01
98 46 0.29
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (96 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATATGGGCTAGTGTAA
GACCATGTCTGGAACATGGCATCGGTATTGA
Found at i:58514509 original size:144 final size:146
Alignment explanation
Indices: 58514245--58514517 Score: 345
Period size: 144 Copynumber: 1.9 Consensus size: 146
58514235 TGTGAGCCAT
* *
58514245 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTATATGAGAGCCAGTGTAAGACTATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTATATGAGAGCCAGTGTAAGACCATGTCT
* ** * *
58514310 GGAACATGGCATCGGTATTTATATGAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCGGCC
66 GGAACATGGCATCGGCATCGATATGAGAGCCAGTGTAAGACCATGTCTGGAGCATGACATCGGCC
58514375 TTGATGTTTGGGCTAG
131 TTGATGTTTGGGCTAG
* * * * *
58514391 TGTAAGACCATGTCTGGGACATGGCATTGG-A-C-TTGATATGTGGGCTAGTGTAAGACCATGTC
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGGT-ATATGAGAGCCAGTGTAAGACCATGTC
* * * * * * *
58514453 TGGGACATTGCATCGGCCTCGATATGTGGGCTAGTGTAAGACCATGTTTGGAGCATGACATCGGC
65 TGGAACATGGCATCGGCATCGATATGAGAGCCAGTGTAAGACCATGTCTGGAGCATGACATCGGC
58514518 ATCTTACCCT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
143 1 0.01
144 76 0.71
145 1 0.01
146 29 0.27
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (146 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTATATGAGAGCCAGTGTAAGACCATGTCT
GGAACATGGCATCGGCATCGATATGAGAGCCAGTGTAAGACCATGTCTGGAGCATGACATCGGCC
TTGATGTTTGGGCTAG
Found at i:58518059 original size:19 final size:20
Alignment explanation
Indices: 58518018--58518060 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
58518008 TTTTGTAAAG
* *
58518018 TTTGTAAAATAAATGGTACT
1 TTTGTAAAATAAATGGAAAT
*
58518038 TTTGTGAAAT-AATGGAAAT
1 TTTGTAAAATAAATGGAAAT
58518057 TTTG
1 TTTG
58518061 GGTTGCTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAAATGGAAAT
Found at i:58529113 original size:39 final size:39
Alignment explanation
Indices: 58529038--58529290 Score: 291
Period size: 39 Copynumber: 6.6 Consensus size: 39
58529028 AGGATTTTAA
* * * *
58529038 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
* *
58529076 CCGGGTTAAGTCCCGAAGGCATTCATGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
58529115 CCGGGTTAAGTCCCAAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* ** ** *
58529154 CTGGATTAAGTCCTAAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
58529193 CCGGGCTAAGT-CCGAAGGCATTCGTGCTAATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
58529231 CCGGGCTAAGTACCGAAGGCATTCGTGCTAATGTTATA-
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
58529269 -CGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
58529291 TGGGTGGAAA
Statistics
Matches: 191, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
37 21 0.11
38 53 0.28
39 113 0.59
40 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:58529250 original size:77 final size:76
Alignment explanation
Indices: 58529070--58529290 Score: 284
Period size: 77 Copynumber: 2.9 Consensus size: 76
58529060 TGTGTGAGAT
* * *
58529070 TTATATCCGGGTTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGGGTTAAGTCCCAAAGGC
1 TTATATCCGGGTTAAGT-CCGAAGGCATTCGTGCTGATATTATATCCGGGCTAAGT-CCGAAGGC
*
58529135 ATTCGTGCTGATA
64 ATTCGTGCTAATA
* * * *
58529148 TTATATCTGGATTAAGTCCTAAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCGAAGGCA
1 TTATATCCGGGTTAAGTCC-GAAGGCATTCGTGCTGATATTATATCCGGGCTAAGTCCGAAGGCA
58529213 TTCGTGCTAATA
65 TTCGTGCTAATA
* * *
58529225 TTATATCCGGGCTAAGTACCGAAGGCATTCGTGCTAATGTTATA--CGGGCTAAGTTCCGAAGGC
1 TTATATCCGGGTTAAGT-CCGAAGGCATTCGTGCTGATATTATATCCGGGCTAAG-TCCGAAGGC
58529288 ATT
64 ATT
58529291 TGGGTGGAAA
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
75 9 0.07
76 12 0.10
77 55 0.44
78 49 0.39
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (76 bp):
TTATATCCGGGTTAAGTCCGAAGGCATTCGTGCTGATATTATATCCGGGCTAAGTCCGAAGGCAT
TCGTGCTAATA
Found at i:58535636 original size:39 final size:38
Alignment explanation
Indices: 58535514--58535762 Score: 276
Period size: 38 Copynumber: 6.6 Consensus size: 38
58535504 AGGATTTTAA
* * * *
58535514 CCGGGCTAAGACCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCGAAGGCATTCGTGCTGATA-TTATAT
*
58535551 CCGGG-TAAGTCCCGAAGGCATTC-AGCTGATATTATAT
1 CCGGGCTAAGT-CCGAAGGCATTCGTGCTGATATTATAT
* *
58535588 CCGGGTTAAGTCCCAAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGT-CCGAAGGCATTCGTGCTGATATTATAT
* ** * *
58535627 CTGGATTAAGTCCAAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCGAAGGCATTCGTGCTGATATTATAT
*
58535665 CCGGGCTAAGTCCGAAGGCATTCGTGCTAATATTATAT
1 CCGGGCTAAGTCCGAAGGCATTCGTGCTGATATTATAT
* *
58535703 CCGGGCTAAGTACCGAAGGCATTCGTGCTAATGTTATA-
1 CCGGGCTAAGT-CCGAAGGCATTCGTGCTGATATTATAT
58535741 -CGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAG-TCCGAAGGCATT
58535763 TGGGTGGAAA
Statistics
Matches: 188, Mismatches: 17, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
36 4 0.02
37 46 0.24
38 91 0.48
39 47 0.25
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (38 bp):
CCGGGCTAAGTCCGAAGGCATTCGTGCTGATATTATAT
Found at i:58543652 original size:38 final size:40
Alignment explanation
Indices: 58543602--58543824 Score: 189
Period size: 39 Copynumber: 5.8 Consensus size: 40
58543592 GATATTTGAG
* * *
58543602 GATTT-TAACCGGGCTAAGACCCGCAGGCCTT-GTG-TGA
1 GATTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCTGA
* *
58543639 GATTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGA
1 GATTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCTGA
* * * *
58543679 TA-TTATATCC-GGTTAAGTCCC-AAAGCATTCGTGCTGA
1 GATTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCTGA
* * * * *
58543716 TA-TTATATCTGGGTTAAGTCCCAAAGGCATTCGTGCTG-
1 GATTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCTGA
* *
58543754 G-TATTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCT-A
1 GAT-TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCTGA
**
58543793 -ATATTATATCCGGGCTAAGTTCCGAAGGCATT
1 GAT-TTATATCCGGGCTAAGACCCGAAGGCATT
58543825 TGGGTTGGAA
Statistics
Matches: 161, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
37 29 0.18
38 43 0.27
39 85 0.53
40 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (40 bp):
GATTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCTGA
Found at i:58543685 original size:39 final size:39
Alignment explanation
Indices: 58543642--58543824 Score: 271
Period size: 39 Copynumber: 4.7 Consensus size: 39
58543632 TGTGTGAGAT
58543642 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
*
58543681 TTATATCC-GGTTAAGTCCC-AAAGCATTCGTGCTGATA
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
58543718 TTATATCTGGGTTAAGTCCCAAAGGCATTCGTGCTGGTA
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
58543757 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTAATA
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
* *
58543796 TTATATCCGGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGTTAAGTCCCGAAGGCATT
58543825 TGGGTTGGAA
Statistics
Matches: 130, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
37 24 0.18
38 22 0.17
39 84 0.65
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (39 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:58545130 original size:49 final size:49
Alignment explanation
Indices: 58545041--58545178 Score: 161
Period size: 49 Copynumber: 2.8 Consensus size: 49
58545031 TAACATTGGT
* * *
58545041 TAAGATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATA
1 TAAG-TGCCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCATATA
*
58545092 GTAAG-GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTA
1 -TAAGTGCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATATA
** * * *
58545141 TCGGTGTCGATGTCATGTCCCAAACAAGTCTTACACTG
1 TAAGTGCCGATGCCATGTCCCAAACAGGTCTTACACTG
58545179 ACACATTACA
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 2 0.03
49 51 0.67
50 19 0.25
52 4 0.05
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
TAAGTGCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATATA
Found at i:58545350 original size:46 final size:47
Alignment explanation
Indices: 58545051--58545371 Score: 182
Period size: 46 Copynumber: 6.8 Consensus size: 47
58545041 TAAGATGCCA
* * *
58545051 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATA-TAGTAAGGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATACTA-T--GGCTG
* * * *
58545101 ATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCAT-CTATCGGTGTCG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATACTAT-GG-CT-G
* * * * * *
58545150 ATGTCATGTCCCAAACAAGTCTTACACT-G-ACACATTAC-A-AGCTG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCTCA-TACTATGGCTG
** ** *
58545194 GCGCCATGTCCCAGACATGTCTTACACTAGCTCTTGT-CTTAAT-GCCG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATAC-T-ATGGCTG
* * *** **
58545241 ATG-CATGTCCAAGACTTGTCTTACACTAGCTAAAATATCTCGA-GATTG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATA-CT--ATGGCTG
*
58545289 ATG-CATG-CCCTAGACATGTCTTACACTGGCTCTCATACTATGGCTG
1 ATGCCATGTCCC-AGACATGTCTTACACTAGCTCTCATACTATGGCTG
*
58545335 ATG-CATGTCCCAGACATGTCTTACACTAGCTCACATA
1 ATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATA
58545372 TCATCCATTA
Statistics
Matches: 209, Mismatches: 44, Indels: 40
0.71 0.15 0.14
Matches are distributed among these distances:
44 25 0.12
45 4 0.02
46 63 0.30
47 18 0.09
48 35 0.17
49 48 0.23
50 16 0.08
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATACTATGGCTG
Found at i:58548200 original size:18 final size:18
Alignment explanation
Indices: 58548177--58548212 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
58548167 GCCTTGGGTG
58548177 ATAGTCTATTATCAACTC
1 ATAGTCTATTATCAACTC
*
58548195 ATAGTCTTTTATCAACTC
1 ATAGTCTATTATCAACTC
58548213 CAACCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.42
Consensus pattern (18 bp):
ATAGTCTATTATCAACTC
Found at i:58550841 original size:29 final size:29
Alignment explanation
Indices: 58550699--58550838 Score: 167
Period size: 29 Copynumber: 4.9 Consensus size: 29
58550689 ACATACATGC
*
58550699 ATATGGCCCAGTT-GGCCC-AATCTCATTT
1 ATATGGCCCA-TTAGGCCCAAATCACATTT
* * *
58550727 ATATGGCCCATCAGGCCCAATTCACATTA
1 ATATGGCCCATTAGGCCCAAATCACATTT
* * *
58550756 ATATGGCCCATTAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACATTT
* *
58550785 ATATGGCCCATTAGACCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
*
58550814 ATATGGCCCGTTAGGCCCAAATCAC
1 ATATGGCCCATTAGGCCCAAATCAC
58550839 CTTATATTCA
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
27 1 0.01
28 15 0.16
29 80 0.83
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTT
Found at i:58556466 original size:23 final size:23
Alignment explanation
Indices: 58556436--58556484 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
58556426 ATGCTGATGA
58556436 TTCAGCCCTAACACTTCAGCAGC
1 TTCAGCCCTAACACTTCAGCAGC
*
58556459 TTCAGCCCTAACACTTCCGCAGC
1 TTCAGCCCTAACACTTCAGCAGC
58556482 TTC
1 TTC
58556485 GGCTACAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.41, G:0.12, T:0.24
Consensus pattern (23 bp):
TTCAGCCCTAACACTTCAGCAGC
Found at i:58558171 original size:29 final size:29
Alignment explanation
Indices: 58558056--58558175 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
58558046 ACATACATGC
*
58558056 ATATGGCCCACTT-GGCCCAA-TCTCATTT
1 ATATGGCCCA-TTAGGCCCAATTCACATTT
*
58558084 ATATGGCCCATTAGGCCCAATTCACATTC
1 ATATGGCCCATTAGGCCCAATTCACATTT
* * *
58558113 ATATGGCCCATCAAGCCCAATTCATATTT
1 ATATGGCCCATTAGGCCCAATTCACATTT
** * *
58558142 ATATGGCCCATTAGGCTGAAATCACCTTT
1 ATATGGCCCATTAGGCCCAATTCACATTT
58558171 ATATG
1 ATATG
58558176 TTTCGTTACG
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
27 2 0.03
28 17 0.22
29 58 0.75
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAATTCACATTT
Found at i:58563083 original size:24 final size:24
Alignment explanation
Indices: 58563032--58563174 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
58563022 GCTTTATCAT
*
58563032 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
58563057 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
58563081 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
58563104 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
58563128 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
58563152 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
58563175 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 23 0.21
24 75 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:58563111 original size:47 final size:48
Alignment explanation
Indices: 58563032--58563173 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 48
58563022 GCTTTATCAT
* *
58563032 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
58563081 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
* *
58563128 ATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
58563174 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 44 0.51
48 30 0.35
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:58563132 original size:71 final size:72
Alignment explanation
Indices: 58563031--58563174 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
58563021 TGCTTTATCA
* *
58563031 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATAA
58563096 GCCCTTT
66 GCCCTTT
* * **
58563103 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATA
58563166 AGCCCTTT
65 AGCCCTTT
58563174 T
1 T
58563175 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 52 0.80
72 13 0.20
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTAGGGCATAA
GCCCTTT
Found at i:58563250 original size:20 final size:20
Alignment explanation
Indices: 58563225--58563284 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
58563215 TATGATTACC
58563225 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
58563245 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
58563265 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
58563285 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:58564642 original size:27 final size:27
Alignment explanation
Indices: 58564613--58564904 Score: 363
Period size: 27 Copynumber: 10.8 Consensus size: 27
58564603 GGTTATTTTA
* *
58564613 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58564640 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
58564667 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
58564694 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58564721 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
58564748 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
58564775 ATAATTATGTAAATCTG-GGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
* *
58564802 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
58564829 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
58564856 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
58564883 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
58564905 CTTTGGTAAT
Statistics
Matches: 240, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
27 238 0.99
28 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:58564912 original size:27 final size:27
Alignment explanation
Indices: 58564549--58565102 Score: 199
Period size: 27 Copynumber: 20.6 Consensus size: 27
58564539 TACCATACAG
* * * *
58564549 GGGTATTTTGGTAGTTTTACAAATTGA
1 GGGTAATTTGGTAATTTTATAAATCGA
* * * * *
58564576 GGGT-ATTGCGGTAATTTCACAAACCAA
1 GGGTAATT-TGGTAATTTTATAAATCGA
* * * *
58564603 GGTTATTTTAGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
**** * *
58564630 GGGTAAAACAGTAATTTTGTAAATCAA
1 GGGTAATTTGGTAATTTTATAAATCGA
**** * *
58564657 GGGTAAAACAGTAATTTTGTAAATCAA
1 GGGTAATTTGGTAATTTTATAAATCGA
** * *
58564684 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** * *
58564711 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
*** * *
58564738 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
*** * * *
58564765 GGGTAAAACGATAATTATGTAAATCTG-
1 GGGTAATTTGGTAATTTTATAAATC-GA
** * * *
58564792 GGGTAAAATGGTAATTATGTAAAT-TA
1 GGGTAATTTGGTAATTTTATAAATCGA
*** *
58564818 GGGGTAAAACGGTAATTCTATAAATCGA
1 -GGGTAATTTGGTAATTTTATAAATCGA
*** *
58564846 GGGTAAAACGGTAATTTTACAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
*** *
58564873 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
* * *
58564900 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** * **
58564927 GGGT-ATTTCAATAATTTTACAGGTCGA
1 GGGTAATTT-GGTAATTTTATAAATCGA
* * * *
58564954 GGGT-ATTTCAGTAATTTCACAAAT-TA
1 GGGTAATTT-GGTAATTTTATAAATCGA
* * *
58564980 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTAATTTGGTAATTTTATAAATCGA
* * * *
58565007 GGGTATTTTGATAATTTTACAAA-CTA
1 GGGTAATTTGGTAATTTTATAAATCGA
* * *
58565033 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTAATTTGGTAATTTTATAAATCGA
* * * *
58565060 GGGTATTTTAGTAATTTTACAAAGC-A
1 GGGTAATTTGGTAATTTTATAAATCGA
*
58565086 GGGTATTTTGGTAATTT
1 GGGTAATTTGGTAATTT
58565103 GTAAACCAAA
Statistics
Matches: 447, Mismatches: 69, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
26 69 0.15
27 371 0.83
28 7 0.02
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (27 bp):
GGGTAATTTGGTAATTTTATAAATCGA
Found at i:58565029 original size:53 final size:53
Alignment explanation
Indices: 58564899--58565102 Score: 207
Period size: 53 Copynumber: 3.8 Consensus size: 53
58564889 CTATAAATCG
* * * * *** *** *
58564899 AGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTAGTAATTTTACAA-ACTAGGGTATTTTGGTAATTTTACAAACCA
* * * *
58564953 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTTAGTAATTTTACAAACTA-GGGTATTTTGGTAATTTTACAAACCA
*
58565006 AGGGTATTTT-GATAATTTTACAAACTAGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTAG-TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACCA
58565059 AGGGTATTTTAGTAATTTTACAAAGC-AGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAA-CTAGGGTATTTTGGTAATTT
58565103 GTAAACCAAA
Statistics
Matches: 127, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 23 0.18
53 65 0.51
54 39 0.31
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACCA
Found at i:58569960 original size:2 final size:2
Alignment explanation
Indices: 58569953--58569983 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
58569943 ATCATGGCCA
58569953 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
58569984 TATACACATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:58570856 original size:69 final size:69
Alignment explanation
Indices: 58570776--58570919 Score: 270
Period size: 69 Copynumber: 2.1 Consensus size: 69
58570766 TATGGAAACA
* *
58570776 TAGTTCATCTCAATATAAGTTCGATTTCACAATTATATCAATATACAACATTTTCTCATATATTT
1 TAGTCCATCTCAATATAAGTTCAATTTCACAATTATATCAATATACAACATTTTCTCATATATTT
58570841 GATT
66 GATT
58570845 TAGTCCATCTCAATATAAGTTCAATTTCACAATTATATCAATATACAACATTTTCTCATATATTT
1 TAGTCCATCTCAATATAAGTTCAATTTCACAATTATATCAATATACAACATTTTCTCATATATTT
58570910 GATT
66 GATT
58570914 TAGTCC
1 TAGTCC
58570920 TCTTTACTAT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 73 1.00
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (69 bp):
TAGTCCATCTCAATATAAGTTCAATTTCACAATTATATCAATATACAACATTTTCTCATATATTT
GATT
Found at i:58576636 original size:20 final size:18
Alignment explanation
Indices: 58576589--58576637 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
58576579 CAAGATATAC
58576589 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
58576606 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
58576626 ATTAAATTAATA
1 ATTAAATTAATA
58576638 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:58581317 original size:32 final size:32
Alignment explanation
Indices: 58581276--58581340 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
58581266 TTGTTAAAGA
58581276 TGTGGGTTGTTTTAGACCCCTAAGAAATCAGC
1 TGTGGGTTGTTTTAGACCCCTAAGAAATCAGC
58581308 TGTGGGTTGTTTTAGACCCCTAAGAAATCAGC
1 TGTGGGTTGTTTTAGACCCCTAAGAAATCAGC
58581340 T
1 T
58581341 AACATGTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (32 bp):
TGTGGGTTGTTTTAGACCCCTAAGAAATCAGC
Found at i:58581992 original size:20 final size:20
Alignment explanation
Indices: 58581956--58581994 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
58581946 TTGCACAAAT
* *
58581956 GTGCCCCTGTCTGCACTTCG
1 GTGCCCCTGTATACACTTCG
58581976 GTGCCCCTGTATACACTTC
1 GTGCCCCTGTATACACTTC
58581995 ATTGTCTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.38, G:0.21, T:0.31
Consensus pattern (20 bp):
GTGCCCCTGTATACACTTCG
Found at i:58587213 original size:48 final size:47
Alignment explanation
Indices: 58587146--58587323 Score: 164
Period size: 48 Copynumber: 3.8 Consensus size: 47
58587136 AAGCTGACGC
* * *
58587146 CATGTCCCAGACAGGTCTTACACTAGCTTGTCCAT-TGCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTAT-CATAT-CGAGGCCGATG
* * * * *
58587194 CATGTCCCAGACATGTCTTACATTGGCTTAATTATCTCGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-ATCATATCGAGGCCGATG
* * * ***
58587242 CATGTCCCAGACATGTCTTACATTGGC-TCTCATATTTTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATCATATCGAGGCCGATG
* *
58587288 CATGTCCCAAACATGTCTTACACTAGCATA-CATATC
1 CATGTCCCAGACATGTCTTACACTAGCTTATCATATC
58587324 ACCGAATATC
Statistics
Matches: 108, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 40 0.37
47 2 0.02
48 64 0.59
49 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTATCATATCGAGGCCGATG
Found at i:58587302 original size:46 final size:47
Alignment explanation
Indices: 58587190--58587309 Score: 172
Period size: 48 Copynumber: 2.6 Consensus size: 47
58587180 TTGCGAGGCT
58587190 GATGCATGTCCCAGACATGTCTTACATTGGCTTAATTATCTCGATGCC
1 GATGCATGTCCCAGACATGTCTTACATTGGCTTAATTATCTCGA-GCC
* * *
58587238 GATGCATGTCCCAGACATGTCTTACATTGGCTCTCA-TATTTTG-GCC
1 GATGCATGTCCCAGACATGTCTTACATTGGCT-TAATTATCTCGAGCC
*
58587284 GATGCATGTCCCAAACATGTCTTACA
1 GATGCATGTCCCAGACATGTCTTACA
58587310 CTAGCATACA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
46 28 0.42
48 37 0.55
49 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACATTGGCTTAATTATCTCGAGCC
Found at i:58587322 original size:46 final size:46
Alignment explanation
Indices: 58587190--58587323 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 46
58587180 TTGCGAGGCT
58587190 GATGCATGTCCCAGACATGTCTTACATTGGCTTA-ATTATCTCGATGCC
1 GATGCATGTCCCAGACATGTCTTACATTGGC-TACA-TATCTCGA-GCC
* * *
58587238 GATGCATGTCCCAGACATGTCTTACATTGGCTCTCATATTTTG-GCC
1 GATGCATGTCCCAGACATGTCTTACATTGGCT-ACATATCTCGAGCC
* * *
58587284 GATGCATGTCCCAAACATGTCTTACACTAGCATACATATC
1 GATGCATGTCCCAGACATGTCTTACATTGGC-TACATATC
58587324 ACCGAATATC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
46 36 0.48
47 2 0.03
48 36 0.48
49 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACATTGGCTACATATCTCGAGCC
Found at i:58591987 original size:46 final size:46
Alignment explanation
Indices: 58591937--58592112 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
58591927 TGGTTGAGCA
*
58591937 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
58591983 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
58592028 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
58592076 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58592113 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 63 0.57
47 29 0.26
48 4 0.04
50 6 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:58592093 original size:93 final size:93
Alignment explanation
Indices: 58591934--58592105 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
58591924 GGATGGTTGA
* *
58591934 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
58591999 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
58592027 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
58592092 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
58592106 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58597271 original size:46 final size:46
Alignment explanation
Indices: 58597163--58597373 Score: 189
Period size: 46 Copynumber: 4.6 Consensus size: 46
58597153 AAGGTGACGC
* * * * *
58597163 CATGTCCTAGACAAGTCTTACACTAGCTTGTCCATCGCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCGAGGCCGATG
* *
58597211 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAACGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCCGATG
* * * * **
58597257 CATGTCCCAAACATGTCTTACATTGGCT-TAAATATCTCGAGGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT---CATCTCGAGGCCGATG
* * * *
58597305 CATGT--C--ACATGTCTTACACTGGCTCTCATATTGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCCGATG
58597347 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
58597374 ACACATATCA
Statistics
Matches: 132, Mismatches: 23, Indels: 18
0.76 0.13 0.10
Matches are distributed among these distances:
42 15 0.11
44 18 0.14
45 2 0.02
46 54 0.41
47 2 0.02
48 41 0.31
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCCGATG
Found at i:58600417 original size:40 final size:38
Alignment explanation
Indices: 58600368--58600475 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
58600358 ATCACGATTT
*
58600368 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
58600408 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
58600448 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
58600476 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:58602805 original size:15 final size:15
Alignment explanation
Indices: 58602747--58602806 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
58602737 TACAGTATCG
58602747 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * * *
58602762 TATCTGGGGTTACTC
1 TATCTTGGATTTCTT
*
58602777 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
*
58602792 TATCTTGGTTTTCTT
1 TATCTTGGATTTCTT
58602807 GCCATCTATA
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.12, C:0.17, G:0.17, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:58605202 original size:50 final size:50
Alignment explanation
Indices: 58605125--58605310 Score: 176
Period size: 51 Copynumber: 3.7 Consensus size: 50
58605115 GTTGTGAGAA
** * *
58605125 CACATGTGTAGTACTGTGTGCAGGCTACTACGTGTACGAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACGAGATGGTTAGAT
* * ** * *
58605175 CGCATGTGTAGTGCTAAGTGCAGGCTACTATGTGTACCTGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACGAGAT-GGTTAGAT
* * *
58605226 CACATGTG-AGATACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGAT
1 CACATGTGTAG-TACTAAGTGCAGGCTACTATGTGTACGAGATGG-TTAGAT
* * * * *
58605277 CACAAGTGTAGTACTATGTGAAGGCCACTTTGTG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG
58605311 AAGAAGGTAG
Statistics
Matches: 110, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
50 38 0.35
51 70 0.64
52 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACGAGATGGTTAGAT
Found at i:58605326 original size:51 final size:51
Alignment explanation
Indices: 58605125--58605355 Score: 173
Period size: 51 Copynumber: 4.5 Consensus size: 51
58605115 GTTGTGAGAA
* * * * * * * *
58605125 CACATGTGTAGTACTGTGTGCAGGCTACTACGTGTACGAGAT-GGTTAGGT
1 CACAAGTGTAGTACTATGTGCAGGCCACTATGTGTAAGAGATAGCTTTGAT
* * * * * *** *
58605175 CGCATGTGTAGTGCTAAGTGCAGGCTACTATGTGTACCTGATAGCTTCGAT
1 CACAAGTGTAGTACTATGTGCAGGCCACTATGTGTAAGAGATAGCTTTGAT
* * * *
58605226 CACATGTG-AGATACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGAT
1 CACAAGTGTAG-TACTATGTGCAGGCCACTATGTGTAAGAGATAGCTTTGAT
* * *
58605277 CACAAGTGTAGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA-
1 CACAAGTGTAGTACTATGTGCAGGCCACTATGTGTAAG-AGATAGCTTTGAT
* *
58605327 CTACAAGGGTGGTACTATGTGCAGGCCAC
1 C-ACAAGTGTAGTACTATGTGCAGGCCAC
58605356 CGGGTATCCG
Statistics
Matches: 147, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
50 41 0.28
51 104 0.71
52 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (51 bp):
CACAAGTGTAGTACTATGTGCAGGCCACTATGTGTAAGAGATAGCTTTGAT
Found at i:58612671 original size:47 final size:46
Alignment explanation
Indices: 58612523--58612837 Score: 230
Period size: 47 Copynumber: 6.7 Consensus size: 46
58612513 TGATTTGTGC
* * * *
58612523 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCA-ATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACACAGA-GATGAGA
* * * * * *
58612569 GCCAGTGTAAGACCATGCCTAGGACATTGCATCGGCATC-CAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGACA-CAGAGATGAGA
* *
58612617 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACACAGAGATGAGT
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGACACAGAGATGAGA
* * *
58612664 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGA-CAC-AGAGATGAGA
* * * * * *
58612711 GCCAGTTTAAGACGTGTCTAGGACATGCATCGGCTA-AGAGTTG-TA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGAC-ACAGAGATGAGA
* * *
58612756 -CTAGTGTAAGACATGTCTGGGACAATGCATCAACATGC-GTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGAC-ATGCATCGACA--CAG-AGATGAGA
*
58612804 GCCAATGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
58612838 GCAATATATC
Statistics
Matches: 212, Mismatches: 38, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
44 20 0.09
45 13 0.06
46 24 0.11
47 97 0.46
48 29 0.14
49 12 0.06
50 17 0.08
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACACAGAGATGAGA
Found at i:58612688 original size:94 final size:91
Alignment explanation
Indices: 58612523--58612841 Score: 302
Period size: 94 Copynumber: 3.4 Consensus size: 91
58612513 TGATTTGTGC
* * * * *
58612523 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCAATATTATGAGAGCCAGTGTAAGACCATGCC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAAGA-GATGAGTGCCAGTGTAAGA-CATGTC
* * *
58612588 TAGGACATTGCATCGGCATC-CAGACGAGG
64 TGGGACA-TGCATCGACATCGCAGA-GAGA
* *
58612617 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACACAGAGATGAGTGCCAGTGTAAGACATGTC
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCA-AGAGATGAGTGCCAGTGTAAGACATGTC
* *
58612682 TGGGACATGCATCGACCTCGACAGAGATA
64 TGGGACATGCATCGACATCG-CAGAGAGA
* * * * * *
58612711 GCCAGTTTAAGACGTGTCTAGGACATGCATCGGCTAAGAG-T-TGTACTAGTGTAAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-AAGAGATGAGTGCCAGTGTAAGACATGTCT
* * *
58612774 GGGACAATGCATCAACATGCGTATATGAGA
65 GGGAC-ATGCATCGACAT-CGCAGA-GAGA
*
58612804 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCAA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAA
58612842 TATATCCCAT
Statistics
Matches: 186, Mismatches: 29, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
91 24 0.13
92 13 0.07
93 36 0.19
94 75 0.40
95 36 0.19
96 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (91 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAAGAGATGAGTGCCAGTGTAAGACATGTCTG
GGACATGCATCGACATCGCAGAGAGA
Found at i:58614806 original size:45 final size:45
Alignment explanation
Indices: 58614717--58614807 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
58614707 AAACTATGTG
* * *
58614717 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCCTGATATAGGTGAC
1 ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATACAGGTGAC
* *
58614762 ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATGCATGTGAC
1 ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATACAGGTGAC
58614807 A
1 A
58614808 GATGTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.35
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATACAGGTGAC
Found at i:58618748 original size:43 final size:42
Alignment explanation
Indices: 58618693--58618851 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 42
58618683 ATGCCAAGGT
* *
58618693 CCAGACGTGGTCTTACATGTAACCAAATATTGATGCCACTGTC
1 CCAGACGTGGTCTTACATGTAATCAAATATCGATGCCA-TGTC
* * *
58618736 CCAGACAG-GGTCTTACATG-AAGTCAAATA-GGATTCTGATGTC
1 CCAGAC-GTGGTCTTACATGTAA-TCAAATATCGATGC-CATGTC
* * *
58618778 CCATACATGGTCTTACATGTAAATCATAA-GTCGATGCCAATGTC
1 CCAGACGTGGTCTTACATGT-AATCA-AATATCGATGCC-ATGTC
* *
58618822 CCAGACGTGGTCTTACATGAAATCACATAT
1 CCAGACGTGGTCTTACATGTAATCAAATAT
58618852 TGGACCCTAT
Statistics
Matches: 91, Mismatches: 15, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
42 27 0.30
43 33 0.36
44 31 0.34
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (42 bp):
CCAGACGTGGTCTTACATGTAATCAAATATCGATGCCATGTC
Found at i:58622911 original size:29 final size:29
Alignment explanation
Indices: 58622853--58622914 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
58622843 CGTATTCATT
* * *
58622853 TGGCCCACTAGGCCTAAATCACCTGGATA
1 TGGCCCACTAGGCCCAAATCACATCGATA
* *
58622882 TGGCCCATTAGGCCCAAATCACATCTATA
1 TGGCCCACTAGGCCCAAATCACATCGATA
58622911 TGGC
1 TGGC
58622915 TCGTTCGGCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (29 bp):
TGGCCCACTAGGCCCAAATCACATCGATA
Found at i:58623171 original size:16 final size:16
Alignment explanation
Indices: 58623150--58623193 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
58623140 GTAGCCGAAC
*
58623150 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
58623166 TTTCGG-TATTTCAGCA
1 TTTCGGCT-TTTCAGCA
*
58623182 TTTCAGCTTTTC
1 TTTCGGCTTTTC
58623194 CCGATTCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 1 0.04
16 22 0.92
17 1 0.04
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:58629165 original size:43 final size:43
Alignment explanation
Indices: 58629115--58629223 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
58629105 AATGCCAACA
*
58629115 TCCCAAACATGGTCTTACATGTAA-CCAAATATCAATG-CTACTG
1 TCCCAAACATGGTCTTACATGTAAGCCAAATA-CAATGTCGA-TG
* * * * *
58629158 TCCCAAACAGGGTTTTACACG-AAGTCAAATACGATGTCGATG
1 TCCCAAACATGGTCTTACATGTAAGCCAAATACAATGTCGATG
*
58629200 TCCCAGACATGGTCTTACATGTAA
1 TCCCAAACATGGTCTTACATGTAA
58629224 ATCATAAGTC
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
42 25 0.47
43 28 0.53
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACATGTAAGCCAAATACAATGTCGATG
Found at i:58631019 original size:39 final size:39
Alignment explanation
Indices: 58630965--58631108 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
58630955 GAATGTTCGA
58630965 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
58631004 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
58631043 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
58631082 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
58631109 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:58631055 original size:78 final size:79
Alignment explanation
Indices: 58630966--58631148 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
58630956 AATGTTCGAG
58630966 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
58631030 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
58631044 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
58631109 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
58631123 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
58631149 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:58639040 original size:39 final size:39
Alignment explanation
Indices: 58638986--58639129 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
58638976 GAATGTTCGA
58638986 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
58639025 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
58639064 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
58639103 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
58639130 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:58639076 original size:78 final size:79
Alignment explanation
Indices: 58638987--58639169 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
58638977 AATGTTCGAG
58638987 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
58639051 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
58639065 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
58639130 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
58639144 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
58639170 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:58652562 original size:61 final size:61
Alignment explanation
Indices: 58652467--58652590 Score: 230
Period size: 61 Copynumber: 2.0 Consensus size: 61
58652457 TAAGGTTGAG
*
58652467 TTAGTACACTCGTGAGTGTGTATCTACTGAGGCAATAATGTGCAAAAGATTCGAGGATGGC
1 TTAGTACACTCGTGAATGTGTATCTACTGAGGCAATAATGTGCAAAAGATTCGAGGATGGC
*
58652528 TTAGTACACTCGTGAATGTGTATCTACTGAGGCAATAATGTGCAAAAGATTTGAGGATGGC
1 TTAGTACACTCGTGAATGTGTATCTACTGAGGCAATAATGTGCAAAAGATTCGAGGATGGC
58652589 TT
1 TT
58652591 GAACAAAGAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (61 bp):
TTAGTACACTCGTGAATGTGTATCTACTGAGGCAATAATGTGCAAAAGATTCGAGGATGGC
Found at i:58660011 original size:41 final size:42
Alignment explanation
Indices: 58659945--58660098 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 42
58659935 AATATTTTTT
* * * *
58659945 TAAAGGTCAAGTTCTTTAGCTGCGTTTGTGGGAAAAGCACCGC
1 TAAAGGT-ATGTTCTATAGCGGCGTTTGTGGCAAAAGCACCGC
*
58659988 TAAAGGT-TGTTCTATAGCGGCGTTGGTGGCAAAAGCACCGC
1 TAAAGGTATGTTCTATAGCGGCGTTTGTGGCAAAAGCACCGC
* ** * * *
58660029 TAAAGGCTATGTTCTTTAGCAACGTTTGTTGTAAAAGCACCAC
1 TAAAGG-TATGTTCTATAGCGGCGTTTGTGGCAAAAGCACCGC
58660072 TAAAGGTCATGTTCTATAGCGGCGTTT
1 TAAAGGT-ATGTTCTATAGCGGCGTTT
58660099 TTTACATAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 35 0.38
42 2 0.02
43 56 0.60
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (42 bp):
TAAAGGTATGTTCTATAGCGGCGTTTGTGGCAAAAGCACCGC
Found at i:58665479 original size:79 final size:82
Alignment explanation
Indices: 58665339--58665523 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
58665329 TCGAATGATG
* * * *
58665339 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
58665403 CGTACGAGTTAATA-AA
66 CGTACGAGTCAATATAA
* **
58665419 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
58665481 TCGTGCGAGTCACTATAA
65 TCGTACGAGTCAATATAA
**
58665499 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58665524 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 54 0.61
80 34 0.38
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTACGAGTCAATATAA
Found at i:58665480 original size:40 final size:40
Alignment explanation
Indices: 58665339--58665523 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
58665329 TCGAATGATG
* *
58665339 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * * *
58665379 TCTGGACTAGGAT-CCGAAGGCATTCGTACGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
58665419 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
58665458 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
58665499 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58665524 AGCGAGTCGT
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
39 32 0.28
40 75 0.65
41 8 0.07
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:58667401 original size:12 final size:12
Alignment explanation
Indices: 58667384--58667409 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
58667374 ACTCAACAAG
58667384 AACAAAACTTTC
1 AACAAAACTTTC
58667396 AACAAAACTTTC
1 AACAAAACTTTC
58667408 AA
1 AA
58667410 TAAGCATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (12 bp):
AACAAAACTTTC
Found at i:58668313 original size:2 final size:2
Alignment explanation
Indices: 58668306--58668330 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
58668296 CGATATTTTC
58668306 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
58668331 GGAACTATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:58674329 original size:14 final size:14
Alignment explanation
Indices: 58674308--58674348 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
58674298 CTTACCTAAT
58674308 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTGA
* **
58674322 TTTGCAAGTTGCAA
1 TGTGCAAGTTGTGA
58674336 TGTGCAAGTTGTG
1 TGTGCAAGTTGTG
58674349 CAAGTTGCAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.22, C:0.10, G:0.32, T:0.37
Consensus pattern (14 bp):
TGTGCAAGTTGTGA
Found at i:58675591 original size:3 final size:3
Alignment explanation
Indices: 58675583--58675624 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
58675573 TTAATTCTAA
58675583 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
58675625 GTGAAAAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:58676975 original size:3 final size:3
Alignment explanation
Indices: 58676969--58677039 Score: 133
Period size: 3 Copynumber: 23.7 Consensus size: 3
58676959 TTTTTATATA
*
58676969 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
58677017 AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
58677040 AATGTGAGTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Done.