Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 204 of 345
Found at i:58677528 original size:4 final size:4
Alignment explanation
Indices: 58677519--58677545 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
58677509 AATTAAAACA
58677519 AATT AATT AATT AATT AATT AATT AAT
1 AATT AATT AATT AATT AATT AATT AAT
58677546 ACATGAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:58679309 original size:96 final size:96
Alignment explanation
Indices: 58679187--58679394 Score: 249
Period size: 96 Copynumber: 2.2 Consensus size: 96
58679177 GACCTACTCT
* * *
58679187 ACTTTAGAGAGATAAGATCTGTAACTTGTAGCTTCAATCTACTACACTGCAAATTCAAGAAAAT-
1 ACTTTAGGGAGATAAGATCTGCAACTTGTAGCTTCAATCTACTACACTACAAATTCAAGAAAATG
58679251 AAGATCTACTATCTTCAGTCTGCTCCGCTACA
66 AA-ATCTACTATCTTCAGTCTGCTCCGCTACA
* * * * * * *
58679283 ACTTTAGGGAGATAAGA-CTTGCAACTTGTAGCTTCAATCTGCTCCACTACTACTTCAGGGAGAT
1 ACTTTAGGGAGATAAGATC-TGCAACTTGTAGCTTCAATCTACTACACTACAAATTCAAGAAAAT
* * *
58679347 GAAATTTACTATCTTTAGTCTGCTCCGCTGCA
65 GAAATCTACTATCTTCAGTCTGCTCCGCTACA
* *
58679379 ACTTCAGGTAGATAAG
1 ACTTTAGGGAGATAAG
58679395 GCTGGTGGCT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
95 1 0.01
96 92 0.97
97 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (96 bp):
ACTTTAGGGAGATAAGATCTGCAACTTGTAGCTTCAATCTACTACACTACAAATTCAAGAAAATG
AAATCTACTATCTTCAGTCTGCTCCGCTACA
Found at i:58679496 original size:89 final size:89
Alignment explanation
Indices: 58679403--58679681 Score: 287
Period size: 89 Copynumber: 3.1 Consensus size: 89
58679393 AGGCTGGTGG
*
58679403 CTTCAATCTGCTTCGCTGCAACGTCAGGAAGATAAGATTCACCTTATTTGATCTACTCCACTGCA
1 CTTCAATCTGCTTCGCTGCAACTTCAGGAAGATAAGATTCACCTTATTTGATCTACTCCACTGCA
* *
58679468 ATTTCAAAGAGATAAGATCTTCAA
66 ACTTCAAGGAGATAAGATCTTCAA
* * ** * * * ** * * *
58679492 CTTCAATTTGCTCCATTGCTACTTCAGGGAGATGAGATT-TGCTGT-CTTCAGTCTGCTCCACTG
1 CTTCAATCTGCTTCGCTGCAACTTCAGGAAGATAAGATTCACCT-TATTTGA-TCTACTCCACTG
* * *
58679555 CAACTTCAGGGAGATAAG-GCTGGT-AG
64 CAACTTCAAGGAGATAAGATCT--TCAA
* * * * *
58679581 CTTCAATCTGCTTCGCTGTAACTTCAGGAAGATAAGATTCGCCGTATTTGATCTACTCTACTACA
1 CTTCAATCTGCTTCGCTGCAACTTCAGGAAGATAAGATTCACCTTATTTGATCTACTCCACTGCA
58679646 ACTTCAAGGAGATAAGATCTTCAA
66 ACTTCAAGGAGATAAGATCTTCAA
58679670 CTTCAATCTGCT
1 CTTCAATCTGCT
58679682 CCACTACTGC
Statistics
Matches: 145, Mismatches: 37, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
88 8 0.06
89 130 0.90
90 7 0.05
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (89 bp):
CTTCAATCTGCTTCGCTGCAACTTCAGGAAGATAAGATTCACCTTATTTGATCTACTCCACTGCA
ACTTCAAGGAGATAAGATCTTCAA
Found at i:58679708 original size:89 final size:88
Alignment explanation
Indices: 58679314--58679708 Score: 268
Period size: 89 Copynumber: 4.4 Consensus size: 88
58679304 CAACTTGTAG
** * * *
58679314 CTTCAATCTGCTCCACTACTACTTCAGGGAGATGAA-ATT-TAC-TATCTTTAGTCTGCTCCGCT
1 CTTCAATCTGCTCCACT-CTACTTCAGGGAGAT-AAGATTCGCCGTAT-TTGA-TCTACTCCACT
* **
58679376 GCAACTTC-AGGTAGATAAG-GCTGGT-GG
62 GCAACTTCAAGG-AGATAAGATCT--TCAA
* * * * * * *
58679403 CTTCAATCTGCTTCGCTGCAACGTCAGGAAGATAAGATTCACCTTATTTGATCTACTCCACTGCA
1 CTTCAATCTGCTCCACT-CTACTTCAGGGAGATAAGATTCGCCGTATTTGATCTACTCCACTGCA
* *
58679468 ATTTCAAAGAGATAAGATCTTCAA
65 ACTTCAAGGAGATAAGATCTTCAA
* * * * * * * *
58679492 CTTCAATTTGCTCCATTGCTACTTCAGGGAGATGAGATTTGCTGT-CTTCAGTCTGCTCCACTGC
1 CTTCAATCTGCTCCACT-CTACTTCAGGGAGATAAGATTCGCCGTATTTGA-TCTACTCCACTGC
* * *
58679556 AACTTCAGGGAGATAAG-GCTGGT-AG
64 AACTTCAAGGAGATAAGATCT--TCAA
* * * * * *
58679581 CTTCAATCTGCTTCGCTGTAACTTCAGGAAGATAAGATTCGCCGTATTTGATCTACTCTACTACA
1 CTTCAATCTGCTCCACTCT-ACTTCAGGGAGATAAGATTCGCCGTATTTGATCTACTCCACTGCA
58679646 ACTTCAAGGAGATAAGATCTTCAA
65 ACTTCAAGGAGATAAGATCTTCAA
* * *
58679670 CTTCAATCTGCTCCACTACTGCTTTAGGGAGATGAGATT
1 CTTCAATCTGCTCCACT-CTACTTCAGGGAGATAAGATT
58679709 TGTGGATTCA
Statistics
Matches: 232, Mismatches: 60, Indels: 28
0.73 0.19 0.09
Matches are distributed among these distances:
88 10 0.04
89 204 0.88
90 15 0.06
91 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (88 bp):
CTTCAATCTGCTCCACTCTACTTCAGGGAGATAAGATTCGCCGTATTTGATCTACTCCACTGCAA
CTTCAAGGAGATAAGATCTTCAA
Found at i:58679710 original size:178 final size:178
Alignment explanation
Indices: 58679314--58679710 Score: 614
Period size: 178 Copynumber: 2.2 Consensus size: 178
58679304 CAACTTGTAG
* * * *
58679314 CTTCAATCTGCTCCACTACTACTTCAGGGAGATGAAATTTACTATCTTTAGTCTGCTCCGCTGCA
1 CTTCAATCTGCTCCACTACTACTTCAGGGAGATGAGATTTGCTATCTTCAGTCTGCTCCACTGCA
* *
58679379 ACTTCAGGTAGATAAGGCTGGTGGCTTCAATCTGCTTCGCTGCAACGTCAGGAAGATAAGATTCA
66 ACTTCAGGGAGATAAGGCTGGTAGCTTCAATCTGCTTCGCTGCAACGTCAGGAAGATAAGATTCA
* * *
58679444 CCTTATTTGATCTACTCCACTGCAATTTCAAAGAGATAAGATCTTCAA
131 CCGTATTTGATCTACTCCACTACAACTTCAAAGAGATAAGATCTTCAA
* * * *
58679492 CTTCAATTTGCTCCATTGCTACTTCAGGGAGATGAGATTTGCTGTCTTCAGTCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTACTACTTCAGGGAGATGAGATTTGCTATCTTCAGTCTGCTCCACTGCA
* * *
58679557 ACTTCAGGGAGATAAGGCTGGTAGCTTCAATCTGCTTCGCTGTAACTTCAGGAAGATAAGATTCG
66 ACTTCAGGGAGATAAGGCTGGTAGCTTCAATCTGCTTCGCTGCAACGTCAGGAAGATAAGATTCA
* *
58679622 CCGTATTTGATCTACTCTACTACAACTTCAAGGAGATAAGATCTTCAA
131 CCGTATTTGATCTACTCCACTACAACTTCAAAGAGATAAGATCTTCAA
* *
58679670 CTTCAATCTGCTCCACTACTGCTTTAGGGAGATGAGATTTG
1 CTTCAATCTGCTCCACTACTACTTCAGGGAGATGAGATTTG
58679711 TGGATTCACC
Statistics
Matches: 196, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
178 196 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (178 bp):
CTTCAATCTGCTCCACTACTACTTCAGGGAGATGAGATTTGCTATCTTCAGTCTGCTCCACTGCA
ACTTCAGGGAGATAAGGCTGGTAGCTTCAATCTGCTTCGCTGCAACGTCAGGAAGATAAGATTCA
CCGTATTTGATCTACTCCACTACAACTTCAAAGAGATAAGATCTTCAA
Found at i:58680201 original size:46 final size:46
Alignment explanation
Indices: 58680060--58680207 Score: 199
Period size: 46 Copynumber: 3.2 Consensus size: 46
58680050 AAAATTTGGT
* * *
58680060 TTCTTCTATCCATCCTACTGCAACTCAAAGGTATAGGATTTGTATC
1 TTCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATC
* * *
58680106 ATCTCCAATCCATCCCACTGCAACTCAGGGGTATAGGATTTGTATC
1 TTCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATC
* **
58680152 TTCTTCAATCCATCCCACTGCAACTCAAGGGTACT-GGATTTCTGGC
1 TTCTTCAATCCATCCCACTGCAACTCAAGGGTA-TAGGATTTGTATC
58680198 TTCTTCAATC
1 TTCTTCAATC
58680208 AATTGATTTG
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 88 0.99
47 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (46 bp):
TTCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATC
Found at i:58680704 original size:53 final size:53
Alignment explanation
Indices: 58680603--58680705 Score: 179
Period size: 53 Copynumber: 1.9 Consensus size: 53
58680593 GCTCGAAACA
**
58680603 AATAAGTTAATCAAAGATAGCAAATGCAATAAGAAGGAAATTTTTTGGGAATG
1 AATAAGTTAATCAAAGATAGCAAATGCAATAAGAAGGAAATTGATTGGGAATG
*
58680656 AATAAGTTAATCAAAGATAGCAAATGTAATAAGAAGGAAATTGATTGGGA
1 AATAAGTTAATCAAAGATAGCAAATGCAATAAGAAGGAAATTGATTGGGA
58680706 GTATAGCTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.49, C:0.05, G:0.21, T:0.25
Consensus pattern (53 bp):
AATAAGTTAATCAAAGATAGCAAATGCAATAAGAAGGAAATTGATTGGGAATG
Found at i:58687264 original size:32 final size:32
Alignment explanation
Indices: 58687225--58687398 Score: 177
Period size: 33 Copynumber: 5.3 Consensus size: 32
58687215 AAATGGAACA
* *
58687225 ACTTGAAAACGTTATGTACACTTTGTGTGTAC
1 ACTTGAAAAGGATATGTACACTTTGTGTGTAC
* * * *
58687257 ACTTGAAAAGGAAAGGTATACTTTGTGTATACC
1 ACTTGAAAAGGATATGTACACTTTGTGTGTA-C
* * * *
58687290 ACTTGAAAAGGAAAGGTACACTATATGTGTAC
1 ACTTGAAAAGGATATGTACACTTTGTGTGTAC
* * *
58687322 ACTTGAAAAGGTTATGTGCACTTTGAGTGTAC
1 ACTTGAAAAGGATATGTACACTTTGTGTGTAC
* *
58687354 AAATTGAAAAGGGTATGTACACTTTGTGTGTACC
1 -ACTTGAAAAGGATATGTACACTTTGTGTGTA-C
*
58687388 ATTTGAAAAGG
1 ACTTGAAAAGG
58687399 GAATGTGCAC
Statistics
Matches: 117, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
32 51 0.44
33 65 0.56
34 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (32 bp):
ACTTGAAAAGGATATGTACACTTTGTGTGTAC
Found at i:58687294 original size:65 final size:65
Alignment explanation
Indices: 58687222--58687398 Score: 192
Period size: 65 Copynumber: 2.7 Consensus size: 65
58687212 CCCAAATGGA
* * * *
58687222 ACAACTTGAAAACGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTATACTTTGTGTAT
1 ACAACTTGAAAAGGATATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGAGTAT
* * * * * ** * * *
58687287 ACCACTTGAAAAGGAAAGGTACACTATATGTGTACACTTGAAAAGGTTATGTGCACTTTGAGTGT
1 ACAACTTGAAAAGGATATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGAGTAT
* * *
58687352 ACAAATTGAAAAGGGTATGTACACTTTGTGTGTACCATTTGAAAAGG
1 ACAACTTGAAAAGGATATGTACACTTTGTGTGTA-CACTTGAAAAGG
58687399 GAATGTGCAC
Statistics
Matches: 89, Mismatches: 22, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
65 78 0.88
66 11 0.12
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (65 bp):
ACAACTTGAAAAGGATATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGAGTAT
Found at i:58687429 original size:33 final size:33
Alignment explanation
Indices: 58687222--58687429 Score: 143
Period size: 33 Copynumber: 6.4 Consensus size: 33
58687212 CCCAAATGGA
* * * *
58687222 ACAACTTGAAAACGTTATGTACACTTTGTGTGT
1 ACAACTTGAAAAGGGTATGTGCACTTTGAGTGT
** * ** * *
58687255 AC-ACTTGAAAAGGAAAGGTATACTTTGTGTAT
1 ACAACTTGAAAAGGGTATGTGCACTTTGAGTGT
* ** * * *
58687287 ACCACTTGAAAAGGAAAGGTACACTAT-ATGTGT
1 ACAACTTGAAAAGGGTATGTGCACTTTGA-GTGT
*
58687320 AC-ACTTGAAAAGGTTATGTGCACTTTGAGTGT
1 ACAACTTGAAAAGGGTATGTGCACTTTGAGTGT
* * *
58687352 ACAAATTGAAAAGGGTATGTACACTTTGTGTGT
1 ACAACTTGAAAAGGGTATGTGCACTTTGAGTGT
* * * * *
58687385 ACCATTTGAAAAGGGAATGTGCACCTCGAGTGT
1 ACAACTTGAAAAGGGTATGTGCACTTTGAGTGT
*
58687418 ACAACTAGAAAA
1 ACAACTTGAAAA
58687430 TGAAAAGTCC
Statistics
Matches: 142, Mismatches: 29, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
32 51 0.36
33 91 0.64
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (33 bp):
ACAACTTGAAAAGGGTATGTGCACTTTGAGTGT
Found at i:58689977 original size:20 final size:20
Alignment explanation
Indices: 58689952--58689991 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
58689942 GTAGACCACC
*
58689952 TAGACACTCCAGAAATGTTA
1 TAGACACCCCAGAAATGTTA
58689972 TAGACACCCCAGAAATGTTA
1 TAGACACCCCAGAAATGTTA
58689992 GTGGTAGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.23
Consensus pattern (20 bp):
TAGACACCCCAGAAATGTTA
Found at i:58694019 original size:21 final size:21
Alignment explanation
Indices: 58693981--58694028 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
58693971 GAATATGCTG
*
58693981 TAAATTGAAAATTTTTGATAGA
1 TAAA-TGAAAATTATTGATAGA
58694003 -AAATGAAAGATTATTGATAGA
1 TAAATGAAA-ATTATTGATAGA
58694024 TAAAT
1 TAAAT
58694029 CACTTTTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 14 0.61
22 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (21 bp):
TAAATGAAAATTATTGATAGA
Found at i:58694747 original size:33 final size:33
Alignment explanation
Indices: 58694730--58694957 Score: 192
Period size: 33 Copynumber: 7.0 Consensus size: 33
58694720 AAAATGTTAT
58694730 GTACACTTTGTGTGTA-CACTTGAAAAGGAAAG
1 GTACACTTTGTGTGTACCACTTGAAAAGGAAAG
* * *
58694762 GTATACTTTGTATATACCA-TATGAAAAGGAAAG
1 GTACACTTTGTGTGTACCACT-TGAAAAGGAAAG
* *
58694795 GTATACTTTGTGTATACCACTTGAAAAGGAAAG
1 GTACACTTTGTGTGTACCACTTGAAAAGGAAAG
* * ** *
58694828 GTACACTATATGTGTA-CACTTGAAAAGGTTAT
1 GTACACTTTGTGTGTACCACTTGAAAAGGAAAG
* * * * ** *
58694860 GTGCACTTTGAGTGTACAAATTGAAAAGGGTAT
1 GTACACTTTGTGTGTACCACTTGAAAAGGAAAG
* * *
58694893 GTACACTTCGTGTGTACCACTTGAAAAGGGAAT
1 GTACACTTTGTGTGTACCACTTGAAAAGGAAAG
* * * * * *
58694926 GTGCACCTCGAGTGTACAACTAGAAAAGGAAA
1 GTACACTTTGTGTGTACCACTTGAAAAGGAAA
58694958 AGTCCATCAG
Statistics
Matches: 162, Mismatches: 30, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
32 39 0.24
33 122 0.75
34 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (33 bp):
GTACACTTTGTGTGTACCACTTGAAAAGGAAAG
Found at i:58694787 original size:65 final size:64
Alignment explanation
Indices: 58694715--58694888 Score: 181
Period size: 65 Copynumber: 2.7 Consensus size: 64
58694705 AAATGGTACA
* * *
58694715 ACTTGAAAATGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTATACT-T-TGTATAT
1 ACTTGAAAAGGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTATATGTATAC
** * * * *
58694777 ACCATATGAAAAGGAAAGGTATACTTTGTGTATACCACTTGAAAAGGAAAGGTACACTATATGTG
1 A-C-T-TGAAAAGGTTATGTACACTTTGTGTGTA-CACTTGAAAAGGAAAGGTACACTATATGTA
58694842 TAC
62 TAC
* * *
58694845 ACTTGAAAAGGTTATGTGCACTTTGAGTGTACAAATTGAAAAGG
1 ACTTGAAAAGGTTATGTACACTTTGTGTGTAC-ACTTGAAAAGG
58694889 GTATGTACAC
Statistics
Matches: 88, Mismatches: 17, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 2 0.02
65 53 0.60
66 23 0.26
67 2 0.02
68 6 0.07
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (64 bp):
ACTTGAAAAGGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTATATGTATAC
Found at i:58694868 original size:98 final size:98
Alignment explanation
Indices: 58694730--58694921 Score: 217
Period size: 98 Copynumber: 2.0 Consensus size: 98
58694720 AAAATGTTAT
* * * *
58694730 GTACACTTTGTGTGTACACTTGAAAAGGAAAGGTATACTTTGTA-TATAC-CATATGAAAAGGAA
1 GTACACTATATGTGTACACTTGAAAAGGAAAGGTACACTTTG-AGTATACAAAT-TGAAAAGGAA
* *
58694793 AGGTATACTTTGTGTATACCACTTGAAAAGGAAAG
64 AGGTACACTTCGTGTATACCACTTGAAAAGGAAAG
** * * * ** *
58694828 GTACACTATATGTGTACACTTGAAAAGGTTATGTGCACTTTGAGTGTACAAATTGAAAAGGGTAT
1 GTACACTATATGTGTACACTTGAAAAGGAAAGGTACACTTTGAGTATACAAATTGAAAAGGAAAG
*
58694893 GTACACTTCGTGTGTACCACTTGAAAAGG
66 GTACACTTCGTGTATACCACTTGAAAAGG
58694922 GAATGTGCAC
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
97 1 0.01
98 74 0.96
99 2 0.03
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.30
Consensus pattern (98 bp):
GTACACTATATGTGTACACTTGAAAAGGAAAGGTACACTTTGAGTATACAAATTGAAAAGGAAAG
GTACACTTCGTGTATACCACTTGAAAAGGAAAG
Found at i:58696520 original size:4 final size:4
Alignment explanation
Indices: 58696513--58696539 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
58696503 ATTGAAAAAA
58696513 AATT AATT AATT AATT AATT AATT AAT
1 AATT AATT AATT AATT AATT AATT AAT
58696540 ACATGAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:58700274 original size:48 final size:46
Alignment explanation
Indices: 58700157--58700279 Score: 151
Period size: 48 Copynumber: 2.6 Consensus size: 46
58700147 AGTGATAATT
*
58700157 TTAAATTTTCAATACTATTCGATATTATTTTAATTTATGCAAATTTAA
1 TTAAA-TTTCAATACTATTTGATATT-TTTTAATTTATGCAAATTTAA
*
58700205 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAATTT-CAATACTATTTGATATTTT-TTAATTTATGCAAATT-TAA
*
58700253 TTACAATTTCAATACTGTTTGAT-TTTT
1 TTA-AATTTCAATACTATTTGATATTTT
58700280 CTTTTTCATT
Statistics
Matches: 68, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
47 13 0.19
48 50 0.74
49 5 0.07
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (46 bp):
TTAAATTTCAATACTATTTGATATTTTTTAATTTATGCAAATTTAA
Found at i:58701909 original size:18 final size:18
Alignment explanation
Indices: 58701886--58701929 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
58701876 ATTCCAGGTG
*
58701886 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
58701904 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
58701922 TGTTTCCT
1 TGTATCCT
58701930 TTTCCTAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.43
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:58702434 original size:19 final size:20
Alignment explanation
Indices: 58702405--58702450 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
58702395 TATAAATAAT
*
58702405 ACAAC-ATAG-TTTTTTACG
1 ACAACTATAGTTTTTTTACA
58702423 ACAACTATAGTTTTTTTACA
1 ACAACTATAGTTTTTTTACA
58702443 ACAACTAT
1 ACAACTAT
58702451 CAACTATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 5 0.20
19 4 0.16
20 16 0.64
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (20 bp):
ACAACTATAGTTTTTTTACA
Found at i:58705676 original size:126 final size:126
Alignment explanation
Indices: 58705440--58705821 Score: 622
Period size: 126 Copynumber: 3.0 Consensus size: 126
58705430 TTATAGCCTC
*
58705440 ATTTGTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
*
58705505 ATAGTGCATCTTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ATAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
*
58705566 ATTTTTCTATGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
58705631 ATAGTGCATCCTACTTGAAGCGTTTTCGGCACTATTTGTTTAGAAACGTCTACTCAGAATT
66 ATAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
58705692 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCCCATGGGAGGTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * * * *
58705757 ACAGTGCATCCTGCTTGGAGCATTTTCTGACACTATTT-TTCCAGAAACGTCTGCTCAGAATT
66 ATAGTGCATCCTGCTTGAAGCGTTTTC-GGCACTATTTGTT-CAGAAACGTCTACTCAGAATT
58705819 ATT
1 ATT
58705822 CTTGCAGAAA
Statistics
Matches: 238, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
126 207 0.87
127 31 0.13
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
ATAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:58707291 original size:25 final size:25
Alignment explanation
Indices: 58707263--58707322 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
58707253 AATAACTGGG
*
58707263 GCCCTTTTTGATTAACTGGGGCAAA
1 GCCCTTTTTGATAAACTGGGGCAAA
* *
58707288 GCCCTTTTCGGTAAACTGGGGCAAA
1 GCCCTTTTTGATAAACTGGGGCAAA
*
58707313 GCCCTCTTTG
1 GCCCTTTTTG
58707323 CACTTCCTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (25 bp):
GCCCTTTTTGATAAACTGGGGCAAA
Found at i:58707412 original size:10 final size:10
Alignment explanation
Indices: 58707388--58707434 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
58707378 CATCTCATAA
58707388 CATATCATGT
1 CATATCATGT
58707398 GCATATCATGT
1 -CATATCATGT
58707409 CATATCATGT
1 CATATCATGT
58707419 CATATCATGT
1 CATATCATGT
58707429 -ATATCA
1 CATATCA
58707435 AAATCTCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:58707412 original size:21 final size:21
Alignment explanation
Indices: 58707368--58707434 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
58707358 TATAATCAAT
* * **
58707368 ATATCTTGTGCATCTCATAAC
1 ATATCATGTGCATATCATGTC
58707389 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATGTC
58707410 ATATCATGT-CATATCATGT-
1 ATATCATGTGCATATCATGTC
58707429 ATATCA
1 ATATCA
58707435 AAATCTCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.24
21 26 0.62
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (21 bp):
ATATCATGTGCATATCATGTC
Found at i:58714386 original size:11 final size:10
Alignment explanation
Indices: 58714370--58714406 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
58714360 CATCTCATAA
58714370 CATATCATGT
1 CATATCATGT
58714380 GCATATCATGT
1 -CATATCATGT
58714391 CATATCATGT
1 CATATCATGT
58714401 -ATATCA
1 CATATCA
58714407 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:58714394 original size:21 final size:21
Alignment explanation
Indices: 58714336--58714400 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
58714326 ACCGAACCCA
* * *
58714336 TGCATATAATGAATATATCTTG
1 TGCATATCAT-AACATATCATG
*
58714358 TGCATCTCATAACATATCATG
1 TGCATATCATAACATATCATG
**
58714379 TGCATATCATGTCATATCATG
1 TGCATATCATAACATATCATG
58714400 T
1 T
58714401 ATATCAAAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 28 0.78
22 8 0.22
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (21 bp):
TGCATATCATAACATATCATG
Found at i:58722321 original size:24 final size:24
Alignment explanation
Indices: 58722288--58722371 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 24
58722278 CTAGAGCCCT
*
58722288 AGCCTCTTTTAATAACTGGGGCAA
1 AGCCTTTTTTAATAACTGGGGCAA
* *
58722312 AGCCTTTTTTGATTAACTAGGGCAA
1 AGCCTTTTTT-AATAACTGGGGCAA
* ** *
58722337 AGCCCTTTTTGGTAAATTGGGGCAA
1 AGCCTTTTTTAAT-AACTGGGGCAA
*
58722362 TGCCTTTTTT
1 AGCCTTTTTT
58722372 GCACTTCTTC
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
24 10 0.21
25 38 0.79
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (24 bp):
AGCCTTTTTTAATAACTGGGGCAA
Found at i:58722328 original size:25 final size:25
Alignment explanation
Indices: 58722300--58722372 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
58722290 CCTCTTTTAA
58722300 TAACTGGGGCAAAGCCTTTTTTGAT
1 TAACTGGGGCAAAGCCTTTTTTGAT
* * *
58722325 TAACTAGGGCAAAGCCCTTTTTGGT
1 TAACTGGGGCAAAGCCTTTTTTGAT
* * *
58722350 AAATTGGGGCAATGCCTTTTTTG
1 TAACTGGGGCAAAGCCTTTTTTG
58722373 CACTTCTTCC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (25 bp):
TAACTGGGGCAAAGCCTTTTTTGAT
Found at i:58722464 original size:10 final size:10
Alignment explanation
Indices: 58722449--58722484 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
58722439 GTATCTTGTG
58722449 CATATCATGT
1 CATATCATGT
58722459 CATATCATGT
1 CATATCATGT
*
58722469 CATATGATGT
1 CATATCATGT
58722479 -ATATCA
1 CATATCA
58722485 AAATCTCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 5 0.21
10 19 0.79
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (10 bp):
CATATCATGT
Found at i:58722464 original size:21 final size:21
Alignment explanation
Indices: 58722418--58722483 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
58722408 TATAATGAAT
*
58722418 ATATCTTGTGCATCTCAT-TAC
1 ATATCTTGTGCATATCATGT-C
*
58722439 GTATCTTGTGCATATCATGTC
1 ATATCTTGTGCATATCATGTC
* *
58722460 ATATCATGT-CATATGATGT-
1 ATATCTTGTGCATATCATGTC
58722479 ATATC
1 ATATC
58722484 AAAATCTCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
19 5 0.13
20 9 0.23
21 24 0.62
22 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (21 bp):
ATATCTTGTGCATATCATGTC
Found at i:58726840 original size:28 final size:28
Alignment explanation
Indices: 58726775--58726873 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
58726765 CATGAGATTG
* * *
58726775 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
58726804 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
58726832 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
58726860 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
58726874 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:58734811 original size:28 final size:28
Alignment explanation
Indices: 58734746--58734844 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
58734736 CATGAGATTG
* * *
58734746 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
58734775 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
58734803 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
58734831 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
58734845 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:58736879 original size:49 final size:49
Alignment explanation
Indices: 58736822--58736922 Score: 193
Period size: 49 Copynumber: 2.1 Consensus size: 49
58736812 AAAAAAAAAG
*
58736822 ATCCAAATGAAATTTAGTGTTTGCATTTATTTTATGTTATTAAAGAAAC
1 ATCCAAATGAAATTTAATGTTTGCATTTATTTTATGTTATTAAAGAAAC
58736871 ATCCAAATGAAATTTAATGTTTGCATTTATTTTATGTTATTAAAGAAAC
1 ATCCAAATGAAATTTAATGTTTGCATTTATTTTATGTTATTAAAGAAAC
58736920 ATC
1 ATC
58736923 ATAATATTAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (49 bp):
ATCCAAATGAAATTTAATGTTTGCATTTATTTTATGTTATTAAAGAAAC
Found at i:58740279 original size:25 final size:22
Alignment explanation
Indices: 58740243--58740288 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
58740233 TAATGTGATG
*
58740243 TGTTATATATTTTAATGCTTTAA
1 TGTTATATATTTAAATG-TTTAA
58740266 TGTTATATGAATTTAAATGTTTA
1 TGTTATAT--ATTTAAATGTTTA
58740289 TTTGCTATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 4 0.20
25 8 0.40
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (22 bp):
TGTTATATATTTAAATGTTTAA
Found at i:58743515 original size:23 final size:23
Alignment explanation
Indices: 58743473--58743517 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
58743463 TTATGAAATA
** *
58743473 AAAAAAGAAAGGTAGTGGAAAAG
1 AAAAAAGAAAGAAAGAGGAAAAG
58743496 AAAAAAGAAAGAAAGAGGAAAA
1 AAAAAAGAAAGAAAGAGGAAAA
58743518 CATTTCTCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.04
Consensus pattern (23 bp):
AAAAAAGAAAGAAAGAGGAAAAG
Found at i:58745634 original size:27 final size:27
Alignment explanation
Indices: 58745594--58745923 Score: 320
Period size: 27 Copynumber: 12.2 Consensus size: 27
58745584 GTTTACCTAG
* * *
58745594 ACCCTTTATATGGTAAAATAACTATTTT
1 ACCC-TTATGTGGTAAAATGACTGTTTT
*
58745622 ACCCTTATGTGGTAAAATAACTGTTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
*
58745649 ACCCTTATGTGGTGAAATGACTGTTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
* *
58745676 GCCCTTATATGGTAAAATGACTGTTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
* * *
58745703 ACACTTAAGTGGTAAAATGACTATTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
* * * * *
58745730 GCCTTTATGTGGTGAAATGAATATTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
* *
58745757 ACCCTTACGTGGTGAAATGACTGTTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
* * **
58745784 GCCCTTATATGGTGTAATGA-TAGTTTT
1 ACCCTTATGTGGTAAAATGACT-GTTTT
* * * *
58745811 ATCGTTATATGGTAAGATGACTGTTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
* * *
58745838 GCCTTTATGTGGTAAGATGACTGTTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
* * *
58745865 GCCCTTATGTGGTAAGATGATTGTTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
* * *
58745892 GCCCTTATATGGTAAGATGACTGTTTT
1 ACCCTTATGTGGTAAAATGACTGTTTT
*
58745919 GCCCT
1 ACCCT
58745924 ATGCGATGTA
Statistics
Matches: 259, Mismatches: 41, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.00
27 253 0.98
28 5 0.02
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (27 bp):
ACCCTTATGTGGTAAAATGACTGTTTT
Found at i:58746464 original size:80 final size:81
Alignment explanation
Indices: 58746338--58746529 Score: 219
Period size: 80 Copynumber: 2.4 Consensus size: 81
58746328 GGGTTTAAAA
* * *
58746338 CAAAACGCCGCTAAAAACTAAGCAAA-AGTGGCTTTTTTATCCAAAACGCCGCTAAAAACTA-AG
1 CAAAACGCCGCAAAAAACTAAG-AAATAGT-GCTATTTTATCCAAAACGCCG-TAAAAAATAGAG
*
58746401 TAATAGTGGCGTTTTCAAC
63 AAATAGTGGCGTTTTCAAC
* *
58746420 CAAAACGCCGCAAAAAACTGAGAAATAGTGC-ATTTTATCCAAAACGTCGTAAAAAATAGAGAAA
1 CAAAACGCCGCAAAAAACTAAGAAATAGTGCTATTTTATCCAAAACGCCGTAAAAAATAGAGAAA
* ***
58746484 TAGTGGTGTTTTTGTC
66 TAGTGGCGTTTTCAAC
* * *
58746500 AAAAACGCCGCAAAAAACTTAGATATAGTG
1 CAAAACGCCGCAAAAAACTAAGAAATAGTG
58746530 GCGCTTTTGT
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
79 8 0.08
80 59 0.62
81 5 0.05
82 23 0.24
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (81 bp):
CAAAACGCCGCAAAAAACTAAGAAATAGTGCTATTTTATCCAAAACGCCGTAAAAAATAGAGAAA
TAGTGGCGTTTTCAAC
Found at i:58746538 original size:41 final size:41
Alignment explanation
Indices: 58746338--58746555 Score: 214
Period size: 41 Copynumber: 5.4 Consensus size: 41
58746328 GGGTTTAAAA
* *
58746338 CAAAACGCCGCTAAAAACTAAGCAAA-AGTGGCTTTTTTATC
1 CAAAACGCCGCAAAAAACTAAG-AAATAGTGGCGTTTTTATC
* * * *
58746379 CAAAACGCCGCTAAAAACTAAGTAATAGTGGCGTTTTCAAC
1 CAAAACGCCGCAAAAAACTAAGAAATAGTGGCGTTTTTATC
* *
58746420 CAAAACGCCGCAAAAAACTGAGAAATAGT-GC-ATTTTATC
1 CAAAACGCCGCAAAAAACTAAGAAATAGTGGCGTTTTTATC
* * * *
58746459 CAAAACGTCGTAAAAAA-TAGAGAAATAGTGGTGTTTTTGTC
1 CAAAACGCCGCAAAAAACTA-AGAAATAGTGGCGTTTTTATC
* * *
58746500 AAAAACGCCGCAAAAAACTTAGATATAGTGGCGCTTTTGT-TC
1 CAAAACGCCGCAAAAAACTAAGAAATAGTGGCG-TTTT-TATC
*
58746542 C-AAACGCCACAAAA
1 CAAAACGCCGCAAAA
58746556 GGTTGAGCTA
Statistics
Matches: 146, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 29 0.20
40 5 0.03
41 103 0.71
42 7 0.05
43 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (41 bp):
CAAAACGCCGCAAAAAACTAAGAAATAGTGGCGTTTTTATC
Found at i:58746547 original size:121 final size:121
Alignment explanation
Indices: 58746338--58746555 Score: 266
Period size: 121 Copynumber: 1.8 Consensus size: 121
58746328 GGGTTTAAAA
* * *
58746338 CAAAACGCCGCTAAAAACTAAGCAAAAGTGGCTTTTTTATCCAAAACGCCGCTAAAAACTAAGTA
1 CAAAACGCCGCTAAAAAATAAGCAAAAGTGGCTTTTTTATCAAAAACGCCGCAAAAAACTAAGTA
*
58746403 ATAGTGGCGTTTTCAACCAAAACGCCGCAAAAAACTGAGAAATAGTGCATTTTATC
66 ATAGTGGCGTTTTCAACCAAAACGCCACAAAAAACTGAGAAATAGTGCATTTTATC
* * *
58746459 CAAAACGTCG-TAAAAAATAGAG-AAATAGTGG-TGTTTTTGTCAAAAACGCCGCAAAAAACTTA
1 CAAAACGCCGCTAAAAAATA-AGCAAA-AGTGGCT-TTTTTATCAAAAACGCCGCAAAAAACTAA
***
58746521 G-ATATAGTGGCGCTTTTGTTCC-AAACGCCACAAAA
63 GTA-ATAGTGGCG-TTTTCAACCAAAACGCCACAAAA
58746556 GGTTGAGCTA
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
120 13 0.16
121 63 0.77
122 6 0.07
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (121 bp):
CAAAACGCCGCTAAAAAATAAGCAAAAGTGGCTTTTTTATCAAAAACGCCGCAAAAAACTAAGTA
ATAGTGGCGTTTTCAACCAAAACGCCACAAAAAACTGAGAAATAGTGCATTTTATC
Found at i:58747089 original size:21 final size:22
Alignment explanation
Indices: 58747065--58747166 Score: 61
Period size: 21 Copynumber: 4.7 Consensus size: 22
58747055 AATTTTAGCC
58747065 CCTAAACCCTAAACTC-TAAAG
1 CCTAAACCCTAAACTCATAAAG
* * * *
58747086 CCTAATCCCAAAAC-CTTAAACTA
1 CCTAAACCCTAAACTCATAAA--G
* *
58747109 CCTTAAACCCTAAAAT-ATGAAG
1 CC-TAAACCCTAAACTCATAAAG
*
58747131 CCTAACCCCTAAA-TCATAAA-
1 CCTAAACCCTAAACTCATAAAG
*
58747151 CCATAAACTCTAAACT
1 CC-TAAACCCTAAACT
58747167 TTTTAAACCA
Statistics
Matches: 60, Mismatches: 13, Indels: 15
0.68 0.15 0.17
Matches are distributed among these distances:
20 4 0.07
21 39 0.65
22 3 0.05
23 2 0.03
24 12 0.20
ACGTcount: A:0.44, C:0.31, G:0.03, T:0.22
Consensus pattern (22 bp):
CCTAAACCCTAAACTCATAAAG
Found at i:58747247 original size:103 final size:103
Alignment explanation
Indices: 58747067--58747291 Score: 344
Period size: 103 Copynumber: 2.2 Consensus size: 103
58747057 TTTTAGCCCC
* *
58747067 TAAACCCTAAACTCTAAAGCCTAATCCCAAAACCTTAAACTACCTTAAACCCTAAAATATGAAGC
1 TAAACCATAAACTCTAAAGCCTAATCCCAAAACCCTAAACTACCTTAAACCCTAAAATATGAAGC
*
58747132 CTAACCCCTAAATCATAAACCATAAACT-CTAAACTTTT
66 CTAACCCCTAAATCATAAACCATAAACTACAAAAC-TTT
*
58747170 TAAACCATAAACTCTAAAGCCTAATCCTAAAACCCTAAACTACCTTAAACCCTAAAATATGAAGC
1 TAAACCATAAACTCTAAAGCCTAATCCCAAAACCCTAAACTACCTTAAACCCTAAAATATGAAGC
* * * *
58747235 CTAACCCTTAAATCATAACCCATGAGCTACAAAACTTT
66 CTAACCCCTAAATCATAAACCATAAACTACAAAACTTT
*
58747273 TAAACCTTAAAACTCTAAA
1 TAAACCAT-AAACTCTAAA
58747292 CTCTAAAAAC
Statistics
Matches: 111, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
103 96 0.86
104 15 0.14
ACGTcount: A:0.44, C:0.28, G:0.04, T:0.24
Consensus pattern (103 bp):
TAAACCATAAACTCTAAAGCCTAATCCCAAAACCCTAAACTACCTTAAACCCTAAAATATGAAGC
CTAACCCCTAAATCATAAACCATAAACTACAAAACTTT
Found at i:58747341 original size:103 final size:102
Alignment explanation
Indices: 58747067--58747328 Score: 314
Period size: 103 Copynumber: 2.5 Consensus size: 102
58747057 TTTTAGCCCC
* ** *
58747067 TAAACCCTAAACTCTAAAGCCTAATCCCAAAACCTTAAACTACCTTAAACCCTAAAATATGAAGC
1 TAAACCATAAACTCTAAAGCCTAAAACTAAAACCTTAAAC-ACCTTAAACCCTAAAATATGAAGC
*
58747132 CTAACCCCTAAATCATAAACCATAAACTCTAAACTTTT
65 CTAACCCCTAAATCATAAACCATAAACTCAAAACTTTT
** *
58747170 TAAACCATAAACTCTAAAGCCTAATCCTAAAACCCTAAACTACCTTAAACCCTAAAATATGAAGC
1 TAAACCATAAACTCTAAAGCCTAAAACTAAAACCTTAAAC-ACCTTAAACCCTAAAATATGAAGC
* * * *
58747235 CTAACCCTTAAATCATAACCCATGAGCTACAAAAC-TTT
65 CTAACCCCTAAATCATAAACCATAAACT-CAAAACTTTT
* * *
58747273 TAAACCTTAAAACTCTAAA-CTCTAAAAACTAAATCCTTAAAC-CCTTATACCCTAAA
1 TAAACCAT-AAACTCTAAAGC-CT-AAAACTAAAACCTTAAACACCTTAAACCCTAAA
58747329 TTATAAACCC
Statistics
Matches: 141, Mismatches: 14, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
103 110 0.78
104 17 0.12
105 14 0.10
ACGTcount: A:0.44, C:0.28, G:0.03, T:0.24
Consensus pattern (102 bp):
TAAACCATAAACTCTAAAGCCTAAAACTAAAACCTTAAACACCTTAAACCCTAAAATATGAAGCC
TAACCCCTAAATCATAAACCATAAACTCAAAACTTTT
Found at i:58747344 original size:15 final size:15
Alignment explanation
Indices: 58747321--58747358 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
58747311 AAACCCTTAT
58747321 ACCCT-AAATTATAA
1 ACCCTAAAATTATAA
*
58747335 ACCCTAAAATTGTAA
1 ACCCTAAAATTATAA
58747350 ACCCTAAAA
1 ACCCTAAAA
58747359 ATAAATTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.50, C:0.24, G:0.03, T:0.24
Consensus pattern (15 bp):
ACCCTAAAATTATAA
Found at i:58748482 original size:20 final size:20
Alignment explanation
Indices: 58748437--58748488 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
58748427 CCCCACCCAA
*
58748437 ATTTCCCCAAATCCCTAACT
1 ATTTCCCCAAATCCCTAAAT
*
58748457 -TTTCCCCTAATCCCTAAAT
1 ATTTCCCCAAATCCCTAAAT
*
58748476 ATTTCCCCGAATC
1 ATTTCCCCAAATC
58748489 AAAAATCGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.27, C:0.38, G:0.02, T:0.33
Consensus pattern (20 bp):
ATTTCCCCAAATCCCTAAAT
Found at i:58748535 original size:19 final size:19
Alignment explanation
Indices: 58748511--58748547 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
58748501 ATCCTTCTGT
58748511 CATTGAAGACTCCGAGTGC
1 CATTGAAGACTCCGAGTGC
58748530 CATTGAAGACTCCGAGTG
1 CATTGAAGACTCCGAGTG
58748548 GACGACCTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (19 bp):
CATTGAAGACTCCGAGTGC
Found at i:58751329 original size:9 final size:9
Alignment explanation
Indices: 58751317--58751483 Score: 64
Period size: 9 Copynumber: 19.0 Consensus size: 9
58751307 ATATCATATA
58751317 ATAACTTAC
1 ATAACTTAC
*
58751326 ATAACTTAT
1 ATAACTTAC
*
58751335 ATACCTTAC
1 ATAACTTAC
*
58751344 A-AA-ATAC
1 ATAACTTAC
* *
58751351 ATAA-ATAT
1 ATAACTTAC
* *
58751359 ATATCATATC
1 ATAACTTA-C
58751369 ATAACTTAC
1 ATAACTTAC
*
58751378 ACAACTTAC
1 ATAACTTAC
58751387 ATAA--TAC
1 ATAACTTAC
* *
58751394 ATAA-ATAT
1 ATAACTTAC
* *
58751402 ATATCATATC
1 ATAACTTA-C
58751412 ATAACTTAC
1 ATAACTTAC
*
58751421 AT-ACTTTAT
1 ATAAC-TTAC
* *
58751430 ATAAATGTAT
1 ATAACT-TAC
* *
58751440 ATCA-TAAC
1 ATAACTTAC
58751448 ATAACTTAC
1 ATAACTTAC
58751457 ATAACTTAC
1 ATAACTTAC
58751466 A-AAGCTTAC
1 ATAA-CTTAC
*
58751475 TTAACTTAC
1 ATAACTTAC
58751484 GTAATACATA
Statistics
Matches: 121, Mismatches: 25, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
7 11 0.09
8 22 0.18
9 67 0.55
10 21 0.17
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (9 bp):
ATAACTTAC
Found at i:58751372 original size:43 final size:43
Alignment explanation
Indices: 58751325--58751468 Score: 167
Period size: 43 Copynumber: 3.5 Consensus size: 43
58751315 TAATAACTTA
*
58751325 CATAACTTATATACCTTACAAAATACATAAATATATATCATAT
1 CATAACTTACATACCTTACAAAATACATAAATATATATCATAT
* * *
58751368 CATAACTTACACAACTTACATAATACATAAATATATATCATAT
1 CATAACTTACATACCTTACAAAATACATAAATATATATCATAT
* * *
58751411 CATAACTTACATA-CTT------TATATAAATGTATATCATAA
1 CATAACTTACATACCTTACAAAATACATAAATATATATCATAT
*
58751447 CATAACTTACATAACTTACAAA
1 CATAACTTACATACCTTACAAA
58751469 GCTTACTTAA
Statistics
Matches: 87, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
36 30 0.34
37 3 0.03
42 3 0.03
43 51 0.59
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.34
Consensus pattern (43 bp):
CATAACTTACATACCTTACAAAATACATAAATATATATCATAT
Found at i:58751378 original size:52 final size:50
Alignment explanation
Indices: 58751300--58751432 Score: 172
Period size: 43 Copynumber: 2.7 Consensus size: 50
58751290 ATCTTAATGT
*
58751300 TAAATATATATCATATAATAACTTACATAACTTATATACCTTACAAAATACA
1 TAAATATATATCATATCATAACTTACAT-ACTTATATA-CTTACAAAATACA
*
58751352 TAAATATATATCATATCATAACTTAC--AC----A-ACTTACATAATACA
1 TAAATATATATCATATCATAACTTACATACTTATATACTTACAAAATACA
58751395 TAAATATATATCATATCATAACTTACATACTTTATATA
1 TAAATATATATCATATCATAACTTACATAC-TTATATA
58751433 AATGTATATC
Statistics
Matches: 71, Mismatches: 2, Indels: 17
0.79 0.02 0.19
Matches are distributed among these distances:
43 38 0.54
44 1 0.01
45 3 0.04
49 2 0.03
50 1 0.01
51 1 0.01
52 25 0.35
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (50 bp):
TAAATATATATCATATCATAACTTACATACTTATATACTTACAAAATACA
Found at i:58751389 original size:36 final size:36
Alignment explanation
Indices: 58751339--58751466 Score: 118
Period size: 36 Copynumber: 3.4 Consensus size: 36
58751329 ACTTATATAC
58751339 CTTACAAA-A-TACATAAATATATATCATATCATAA
1 CTTACAAACATTACATAAATATATATCATATCATAA
58751373 CTTACACAACTTACATAATACATAAATATATATCATATCATAA
1 CTT--ACAA---ACAT--TACATAAATATATATCATATCATAA
* * * * *
58751416 CTTACATACTTTATATAAATGTATATCATAACATAA
1 CTTACAAACATTACATAAATATATATCATATCATAA
58751452 CTTACATAAC-TTACA
1 CTTACA-AACATTACA
58751467 AAGCTTACTT
Statistics
Matches: 77, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
34 3 0.04
36 36 0.47
37 2 0.03
38 3 0.04
39 1 0.01
40 1 0.01
41 3 0.04
43 28 0.36
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.34
Consensus pattern (36 bp):
CTTACAAACATTACATAAATATATATCATATCATAA
Found at i:58753352 original size:40 final size:40
Alignment explanation
Indices: 58753307--58753474 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
58753297 CGGAATATAA
58753307 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
58753347 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
58753387 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
58753427 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
58753467 CCGGATAT
1 CCGGATAT
58753475 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:58761353 original size:40 final size:40
Alignment explanation
Indices: 58761308--58761475 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
58761298 CGGAATATAA
58761308 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
58761348 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
58761388 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
58761428 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
58761468 CCGGATAT
1 CCGGATAT
58761476 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:58767836 original size:13 final size:14
Alignment explanation
Indices: 58767820--58767848 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
58767810 TTATAAATAT
58767820 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
58767833 TTATAATGGTTTAA
1 TTATAATGGTTTAA
58767847 TT
1 TT
58767849 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:58768292 original size:21 final size:21
Alignment explanation
Indices: 58768254--58768329 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
58768244 ACAACTTAGA
* * *
58768254 GCAGAGGCAGTAGAGAGGGAG
1 GCAGCGGCAGCAGTGAGGGAG
*
58768275 GCAGCGACAGCAGTGAGGGAG
1 GCAGCGGCAGCAGTGAGGGAG
* *
58768296 GCAACGGCAGCAGTGAGAGAG
1 GCAGCGGCAGCAGTGAGGGAG
*
58768317 GCAGAGGCAGCAG
1 GCAGCGGCAGCAG
58768330 CGATGGTAGT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.32, C:0.17, G:0.47, T:0.04
Consensus pattern (21 bp):
GCAGCGGCAGCAGTGAGGGAG
Found at i:58768621 original size:31 final size:31
Alignment explanation
Indices: 58768585--58768650 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
58768575 TGTATTTTTT
*
58768585 ATGCTACATTTGCTGTTTTTGGTTGGATTTC
1 ATGCTACATTTGCTGTTTTTGGTTGGATTTA
*
58768616 ATGCTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGCTACATTTGCTGTTTTTGGTTGGATTTA
58768647 ATGC
1 ATGC
58768651 AGGAAGGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.15, C:0.11, G:0.23, T:0.52
Consensus pattern (31 bp):
ATGCTACATTTGCTGTTTTTGGTTGGATTTA
Found at i:58771614 original size:29 final size:29
Alignment explanation
Indices: 58771581--58771683 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
58771571 GTGACGAGAT
58771581 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
58771610 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
58771639 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
58771668 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
58771684 AGCTCGAAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:58771702 original size:58 final size:58
Alignment explanation
Indices: 58771577--58771703 Score: 148
Period size: 58 Copynumber: 2.2 Consensus size: 58
58771567 TATGGTGACG
* * * * *
58771577 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
* * **
58771634 ATATAAGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
* *
58771692 GGGTATGGCACT
1 AGATATGGCACT
58771704 GTGTGTGCGG
Statistics
Matches: 56, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
57 3 0.05
58 53 0.95
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.24
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:58775547 original size:102 final size:103
Alignment explanation
Indices: 58775425--58775630 Score: 405
Period size: 102 Copynumber: 2.0 Consensus size: 103
58775415 AAAGATACTT
58775425 CGACAAAGAAATAAGGATATAGTGATGTTGATTTGGAAGGTCAAGATTACCCAGAATCAACCTTT
1 CGACAAAGAAATAAGGATATAGTGATGTTGATTTGGAAGGTCAAGATTACCCAGAATCAACCTTT
58775490 ACTATTAATAATGCCTTGGCAAAACCGTATCTACTTTA
66 ACTATTAATAATGCCTTGGCAAAACCGTATCTACTTTA
58775528 CGACAAAGAAA-AAGGATATAGTGATGTTGATTTGGAAGGTCAAGATTACCCAGAATCAACCTTT
1 CGACAAAGAAATAAGGATATAGTGATGTTGATTTGGAAGGTCAAGATTACCCAGAATCAACCTTT
58775592 ACTATTAATAATGCCTTGGCAAAACCGTATCTACTTTA
66 ACTATTAATAATGCCTTGGCAAAACCGTATCTACTTTA
58775630 C
1 C
58775631 TGGATAGAAA
Statistics
Matches: 103, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
102 92 0.89
103 11 0.11
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (103 bp):
CGACAAAGAAATAAGGATATAGTGATGTTGATTTGGAAGGTCAAGATTACCCAGAATCAACCTTT
ACTATTAATAATGCCTTGGCAAAACCGTATCTACTTTA
Found at i:58778909 original size:28 final size:26
Alignment explanation
Indices: 58778878--58778941 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
58778868 AATTACTTGA
*
58778878 ATACCCCTATGTATGGAAAATTA-CAGTT
1 ATACCCCTA-G-ATGCAAAATTACCA-TT
* *
58778906 ATACCCTTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
58778932 ATACCCCTAG
1 ATACCCCTAG
58778942 GTTTACTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 20 0.65
27 3 0.10
28 8 0.26
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:58778933 original size:26 final size:26
Alignment explanation
Indices: 58778894--58778943 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
58778884 CTATGTATGG
*
58778894 AAAATTACAGTTATACCCTTAGGTGC
1 AAAATTACAGTTATACCCCTAGGTGC
58778920 AAAATTACCA-TTATACCCCTAGGT
1 AAAATTA-CAGTTATACCCCTAGGT
58778944 TTACTTCTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (26 bp):
AAAATTACAGTTATACCCCTAGGTGC
Found at i:58781743 original size:30 final size:30
Alignment explanation
Indices: 58781709--58781769 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58781699 TCCTTAACTC
58781709 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
58781739 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
58781769 A
1 A
58781770 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:58783908 original size:13 final size:13
Alignment explanation
Indices: 58783890--58783925 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
58783880 TAAATCTTTG
58783890 ATGTTTGATTTTC
1 ATGTTTGATTTTC
58783903 ATGTTTGATTTTC
1 ATGTTTGATTTTC
58783916 ATGTTTGATT
1 ATGTTTGATT
58783926 AAGTGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.06, G:0.17, T:0.61
Consensus pattern (13 bp):
ATGTTTGATTTTC
Found at i:58784931 original size:39 final size:39
Alignment explanation
Indices: 58784877--58785148 Score: 418
Period size: 39 Copynumber: 7.0 Consensus size: 39
58784867 AAGACACTGA
58784877 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
58784916 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGTTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
58784955 AAATATATCCGGGCTAAAGTCCCACAGGCTTCGTGATAG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
58784994 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
58785033 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
58785072 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGCGCTAG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
58785111 AAATGTATCCAGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
58785149 ATAATATAAT
Statistics
Matches: 211, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 211 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:58790971 original size:27 final size:26
Alignment explanation
Indices: 58790931--58791035 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
58790921 AGGAAGCGTC
*
58790931 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
58790958 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
58790985 CCGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* **
58791013 CTGGTGACTCTATCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
58791036 ATTCTGGAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.03
27 49 0.73
28 16 0.24
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:58791035 original size:54 final size:54
Alignment explanation
Indices: 58790933--58791035 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
58790923 GAAGCGTCCT
* * *
58790933 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCC
1 GGTGGCTATACCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTTCC
* * *
58790987 GGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCT
1 GGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTACCACATATATCT
58791036 ATTCTGGAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 25 0.60
55 17 0.40
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.35
Consensus pattern (54 bp):
GGTGGCTATACCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTTCC
Found at i:58794420 original size:40 final size:40
Alignment explanation
Indices: 58794363--58794504 Score: 214
Period size: 40 Copynumber: 3.5 Consensus size: 40
58794353 ATCAAGGTTC
* *
58794363 AACTTAATCCGGGTACATCACTAGCACGAATGCTCTTCGG
1 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
58794403 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
1 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
*
58794443 AACTTAGTCTGGATACATCACTAGCACGAATGCTCTTCGG
1 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
* * *
58794483 GATTTAG-CCTGGATATATCACT
1 AACTTAGTCC-GGATACATCACT
58794505 CTCAATTCTT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 93 0.99
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
Found at i:58795913 original size:40 final size:40
Alignment explanation
Indices: 58795856--58795997 Score: 214
Period size: 40 Copynumber: 3.5 Consensus size: 40
58795846 ATCAAGGTTC
* *
58795856 AACTTAATCCGGGTACATCACTAGCACGAATGCTCTTCGG
1 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
58795896 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
1 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
*
58795936 AACTTAGTCTGGATACATCACTAGCACGAATGCTCTTCGG
1 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
* * *
58795976 GATTTAG-CCTGGATATATCACT
1 AACTTAGTCC-GGATACATCACT
58795998 CTCAATTCTT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 93 0.99
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
Found at i:58797943 original size:37 final size:37
Alignment explanation
Indices: 58797893--58797978 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
58797883 TTATTACGAA
58797893 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
58797930 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
58797967 GTCTCACCCGGA
1 GTCTTACCCGGA
58797979 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:58798110 original size:48 final size:48
Alignment explanation
Indices: 58798027--58798246 Score: 341
Period size: 48 Copynumber: 4.6 Consensus size: 48
58798017 ACAACATTCT
* * * * *
58798027 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
* * * * * *
58798075 CATTCGCCATTCGGCTTTACGACATATACACATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
58798123 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
58798171 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
58798219 CATTAGCCATTCGGCTTTACCACATATA
1 CATTAGCCATTCGGCTTTACCACATATA
58798247 TACATTCACA
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 159 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (48 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
Found at i:58798336 original size:47 final size:47
Alignment explanation
Indices: 58798224--58798481 Score: 438
Period size: 47 Copynumber: 5.6 Consensus size: 47
58798214 TTTCACATTA
* * *
58798224 GCCATTCGGCTTTACCACATATATACA--TTCACATT-ATCACAT--
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
58798266 GCCATTAGG-CTTACCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
58798312 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
58798359 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
58798406 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
58798453 GCCATTAGGCCTTATCACATATATACACT
1 GCCATTAGGCCTTATCACATATATACACT
58798482 ACGAGCTGTT
Statistics
Matches: 207, Mismatches: 3, Indels: 7
0.95 0.01 0.03
Matches are distributed among these distances:
41 16 0.08
42 8 0.04
43 8 0.04
44 7 0.03
46 9 0.04
47 159 0.77
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:58801997 original size:40 final size:40
Alignment explanation
Indices: 58801948--58802339 Score: 617
Period size: 40 Copynumber: 9.8 Consensus size: 40
58801938 CCAGCATGAT
* * *
58801948 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * *
58801988 TGCTCTTCGGGACTTAGTCCGGTTGCCTTACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
58802028 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCTA-GAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGC-ACGAA
58802068 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
58802108 TGCTCTTCGGAACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
58802148 TGCTCTTCGGAACTTAATCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
58802188 TGCTCTTCGGAACTTAATCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
58802228 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
58802268 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
58802308 TGCTCTTCGGGATTTAG-CCTGGATATATCACT
1 TGCTCTTCGGAACTTAGTCC-GGATACATCACT
58802340 CTCAATTCTT
Statistics
Matches: 329, Mismatches: 20, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
39 3 0.01
40 325 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:58804286 original size:37 final size:37
Alignment explanation
Indices: 58804236--58804321 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
58804226 TTATTACGAA
58804236 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
58804273 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
58804310 GTCTCACCCGGA
1 GTCTTACCCGGA
58804322 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:58804453 original size:48 final size:48
Alignment explanation
Indices: 58804370--58804589 Score: 334
Period size: 48 Copynumber: 4.6 Consensus size: 48
58804360 ACAACATTCT
* * * * *
58804370 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
* * * * *
58804418 CATTCA-CCATTCGGCTTTACGACATATACACATCTCATATATATTTCA
1 CATT-AGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
58804466 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
58804514 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
58804562 CATTAGCCATTCGGCTTTACCACATATA
1 CATTAGCCATTCGGCTTTACCACATATA
58804590 TACACTTTCA
Statistics
Matches: 159, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
47 1 0.01
48 157 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
Found at i:58804629 original size:47 final size:47
Alignment explanation
Indices: 58804567--58804736 Score: 304
Period size: 47 Copynumber: 3.6 Consensus size: 47
58804557 TTTCACATTA
* *
58804567 GCCATTCGGCTTTACCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACATCG
58804614 GCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACATCG
*
58804661 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACATCG
*
58804708 GCCATTAGGCCTTATCACATATATACACT
1 GCCATTAGGCCTTACCACATATATACACT
58804737 ACGAGCTGTT
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
GCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACATCG
Found at i:58804649 original size:96 final size:93
Alignment explanation
Indices: 58804370--58804730 Score: 327
Period size: 96 Copynumber: 3.8 Consensus size: 93
58804360 ACAACATTCT
* * * * *
58804370 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATT-TCACATTC-ACCATTCGGC
1 CATTAGCCATTCGGCTTTACCACATA-T-ATA-CACTTACACATTATCACA-TCGGCCATTAGGC
* * *
58804433 TTTACGACATATACACATCTCATATATATTTCA
62 CTTACCACATATACACATCTCACAT-TATTTCA
* * * ** * *
58804466 CATTAGCCATTCGGCTTTACCACATATACATA-TCACACATGTATTTCACATTAGCCATTCGGCT
1 CATTAGCCATTCGGCTTTACCACATATATACACTTACACAT-TA--TCACATCGGCCATTAGGCC
* *
58804530 TTACCACATATACATATCACACATGTATTTCA
63 TTACCACATATACACATCTCACAT-TATTTCA
*
58804562 CATTAGCCATTCGGCTTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 CATTAGCCATTCGGCTTTACCACATATATACACTTACACATT-ATCACATCGGCCATTAGGCCTT
* *
58804627 ACCACATATATACACTTTCACATTCA--TCA
65 ACCACATATACACA-TCTCACATT-ATTTCA
** * * * *
58804656 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 CATTAGCCATTCGGCTTTACCACATATATACACTTACACATT-ATCACATCGGCCATTAGGCCTT
*
58804721 ATCACATATA
65 ACCACATATA
58804731 TACACTACGA
Statistics
Matches: 225, Mismatches: 31, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
92 5 0.02
93 1 0.00
94 74 0.33
95 32 0.14
96 106 0.47
97 7 0.03
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (93 bp):
CATTAGCCATTCGGCTTTACCACATATATACACTTACACATTATCACATCGGCCATTAGGCCTTA
CCACATATACACATCTCACATTATTTCA
Found at i:58804649 original size:144 final size:143
Alignment explanation
Indices: 58804370--58804636 Score: 351
Period size: 144 Copynumber: 1.9 Consensus size: 143
58804360 ACAACATTCT
* * *
58804370 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCACATTCACCATTCGGCTT
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACACGCATTTCACATTCACCATTCGGCTT
* * * * * *
58804435 TACGACATATACACATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
66 TACCACATATACACATCTCACATATA-TTCACATCAGCCATTAGGCCTTACCACATATACACATC
58804500 ACACATGTATTTCA
130 ACACATGTATTTCA
* *
58804514 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATT-AGCCATTCGGCT
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACACGCATTTCACATTCA-CCATTCGGCT
* * *
58804578 TTACCACATATATACACTTTCACAT-TCA-TCACATCGGCCATTAGGCCTTACCACATATA
65 TTACCACATATACACA-TCTCACATAT-ATTCACATCAGCCATTAGGCCTTACCACATATA
58804637 TACACTTTCA
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
143 28 0.26
144 72 0.67
145 7 0.07
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (143 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCACACACGCATTTCACATTCACCATTCGGCTT
TACCACATATACACATCTCACATATATTCACATCAGCCATTAGGCCTTACCACATATACACATCA
CACATGTATTTCA
Found at i:58812706 original size:25 final size:25
Alignment explanation
Indices: 58812678--58812725 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
58812668 GTCTAGTGGC
*
58812678 AAAGTAGCGCCATATAAGAGGCAGG
1 AAAGTAGCGCCATAGAAGAGGCAGG
* * *
58812703 AAAGTTGCGTCATAGAAGTGGCA
1 AAAGTAGCGCCATAGAAGAGGCA
58812726 AGGAGGTCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.31, T:0.17
Consensus pattern (25 bp):
AAAGTAGCGCCATAGAAGAGGCAGG
Found at i:58813294 original size:27 final size:27
Alignment explanation
Indices: 58813272--58813666 Score: 495
Period size: 27 Copynumber: 14.6 Consensus size: 27
58813262 TTAGTTTACC
58813272 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
58813299 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
58813326 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * **
58813353 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
58813380 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
58813407 AAATTACTAAAATACCCTTCGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
58813434 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
** **
58813461 AAATTACCAAAATACCTTTAGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
** *
58813488 AAATTACCAAAATACCTTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
58813515 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
58813542 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
58813569 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
58813596 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
58813623 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
**
58813650 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
58813667 TCGACCTGTA
Statistics
Matches: 320, Mismatches: 47, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 319 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:58813337 original size:54 final size:54
Alignment explanation
Indices: 58813272--58813666 Score: 583
Period size: 54 Copynumber: 7.3 Consensus size: 54
58813262 TTAGTTTACC
*
58813272 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
58813326 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
58813380 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTCGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
58813434 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCTTTAGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** * *
58813488 AAATTACCAAAATACCTTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
58813542 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
58813596 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
**
58813650 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
58813667 TCGACCTGTA
Statistics
Matches: 307, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 307 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:58813703 original size:108 final size:108
Alignment explanation
Indices: 58813272--58813722 Score: 550
Period size: 108 Copynumber: 4.2 Consensus size: 108
58813262 TTAGTTTACC
58813272 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
* * **
58813337 ATACCCCTG-GTTTGTAAAATTACCAAAATACCCTTGGTTTACA
66 ATACCCC-GAGTTTGTAAAATTACCAAAATACCCTCGATTTGTA
*
58813380 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTCGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
* ** **
58813445 ATACCCCTAGTTTGTAAAATTACCAAAATA-CCTTTAGTTTACA
66 ATACCCCGAGTTTGTAAAATTACCAAAATACCCTCGA-TTTGTA
** * *
58813488 AAATTACCAAAATACCTTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
* *
58813553 ATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTGGTTTGTA
66 ATACCCCGAGTTTGTAAAATTACCAAAATACCCTC-GATTTGTA
* * * * * * * **
58813596 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
** *** *
58813661 ATACCCTCGA-CCTGTAAAATTATTGAAATACCCTCGACTTGTA
66 ATACCC-CGAGTTTGTAAAATTACCAAAATACCCTCGATTTGTA
*
58813704 AAATTACCAAAGTACCCCT
1 AAATTACCAAAATACCCCT
58813723 GATTTACAGA
Statistics
Matches: 302, Mismatches: 35, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
107 4 0.01
108 293 0.97
109 5 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (108 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
ATACCCCGAGTTTGTAAAATTACCAAAATACCCTCGATTTGTA
Found at i:58813719 original size:27 final size:26
Alignment explanation
Indices: 58813272--58813727 Score: 365
Period size: 27 Copynumber: 16.9 Consensus size: 26
58813262 TTAGTTTACC
*
58813272 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* * * *
58813299 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
58813326 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * **
58813353 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
*
58813380 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* *
58813407 AAATTACTAAAATACCCTTCG-TTTATA
1 AAATTACCAAAATACCC--CGATTTGTA
* *
58813434 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*** **
58813461 AAATTACCAAAATACCTTTAGTTTACA
1 AAATTACCAAAATACCCCGA-TTTGTA
** *
58813488 AAATTACCAAAATACCTTTGGTTTGTA
1 AAATTACCAAAATACC-CCGATTTGTA
* * * *
58813515 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCC-CGATTTGTA
*
58813542 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
58813569 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
58813596 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
58813623 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** **
58813650 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
58813677 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*
58813704 AAATTACCAAAGTACCCCTGATTT
1 AAATTACCAAAATACCCC-GATTT
58813728 ACAGAATTAC
Statistics
Matches: 351, Mismatches: 62, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.00
26 1 0.00
27 344 0.98
28 4 0.01
29 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:58813773 original size:27 final size:27
Alignment explanation
Indices: 58813650--58813775 Score: 87
Period size: 27 Copynumber: 4.7 Consensus size: 27
58813640 CTGATTTGTG
* **
58813650 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACTTACA
* **
58813677 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACTTACA
* *
58813704 AAATTAC-CAAAGTACCC-CTGATTTACA
1 AAATTACTGAAA-TACCCTC-GACTTACA
* * ** *
58813731 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGACTTACA
58813758 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
58813776 TGTACAGTAG
Statistics
Matches: 80, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.05
27 74 0.93
28 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACTTACA
Found at i:58813796 original size:27 final size:27
Alignment explanation
Indices: 58813766--58814004 Score: 250
Period size: 27 Copynumber: 8.9 Consensus size: 27
58813756 CAAAATTACT
* ** *
58813766 GAAATACCCTTGTACAGTAGAAATGTC
1 GAAATACCCCTGTAGGGTAGAAATATC
* *
58813793 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATATC
58813820 GAAATACCCCTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAAATATC
*
58813847 GAAATACCCCTGTAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAAATATC
* *
58813873 TAAAATACCCCTGTAGGGTAGAATTATC
1 -GAAATACCCCTGTAGGGTAGAAATATC
* * *
58813901 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATATC
* *
58813928 GAAATACCCCTGTAGGATAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAAATATC
* * * *
58813954 TGAAATACTCCTGTAAGGTAGAATTATT
1 -GAAATACCCCTGTAGGGTAGAAATATC
* * *
58813982 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAAAT
58814005 TACCATTTTA
Statistics
Matches: 181, Mismatches: 27, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
26 5 0.03
27 175 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAAATATC
Found at i:58814000 original size:81 final size:81
Alignment explanation
Indices: 58813794--58814004 Score: 289
Period size: 81 Copynumber: 2.6 Consensus size: 81
58813784 AGAAATGTCG
* * * * * *
58813794 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATATCGAAATACCCCTG
1 AAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
*
58813859 TAGGGTAGAATTACTA
66 TAGGATAGAATTACTA
* *
58813875 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
*
58813940 TAGGATAGAATTACTG
66 TAGGATAGAATTACTA
* * * *
58813956 AAATACTCCTGTAAGGTAGAATTATTGAGATACCCTTGTGGGGTA-AAAT
1 AAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAAT
58814005 TACCATTTTA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
80 4 0.03
81 112 0.97
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
TAGGATAGAATTACTA
Found at i:58814433 original size:6 final size:6
Alignment explanation
Indices: 58814424--58814622 Score: 167
Period size: 6 Copynumber: 32.3 Consensus size: 6
58814414 TTGCATTCAC
* *
58814424 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
*
58814474 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * *
58814523 ATTCTG ATTCTG -TTACCTA ATTTTG ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
58814572 -TCACCTG ATTCTG ATTCTG ATTCTG ATTTTT ATTTTG ATTCT- AGTTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
58814621 AT
1 AT
58814623 AATGTTTCTT
Statistics
Matches: 158, Mismatches: 18, Indels: 34
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 126 0.80
7 13 0.08
8 8 0.05
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:58814455 original size:25 final size:25
Alignment explanation
Indices: 58814427--58814559 Score: 163
Period size: 25 Copynumber: 5.6 Consensus size: 25
58814417 CATTCACATT
*
58814427 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
58814452 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
58814477 CTGATTCTGATTCTG--A--T--T-
1 CTGATTCTGATTCTGTTACCTAATA
* *
58814495 CTGATTCTGATTCTATTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
58814520 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
58814545 TTGATTCTGATTCTG
1 CTGATTCTGATTCTG
58814560 ATTTTGATTC
Statistics
Matches: 94, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
18 14 0.15
19 1 0.01
20 1 0.01
21 1 0.01
22 1 0.01
23 1 0.01
24 1 0.01
25 74 0.79
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:58814487 original size:37 final size:37
Alignment explanation
Indices: 58814446--58814599 Score: 187
Period size: 37 Copynumber: 4.3 Consensus size: 37
58814436 ATTCTGTTAC
*
58814446 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
*
58814483 CTGATTCTGATTCTGATTCTGATT--CT-A-T-T-A-C
1 CTGATTCTGATTCTGATTCTG-TTACCTAATTCTGATT
* *
58814514 CTGATACTGATTCTGATTCTGTTACCTAATTTTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
* * *
58814551 CTGATTCTGATTTTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
58814588 CTGATTCTGATT
1 CTGATTCTGATT
58814600 TTTATTTTGA
Statistics
Matches: 100, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
30 2 0.02
31 20 0.20
32 3 0.03
33 2 0.02
34 2 0.02
35 2 0.02
36 3 0.03
37 64 0.64
38 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
Found at i:58814533 original size:68 final size:68
Alignment explanation
Indices: 58814424--58814571 Score: 269
Period size: 68 Copynumber: 2.2 Consensus size: 68
58814414 TTGCATTCAC
*
58814424 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
58814489 CTG
66 CTG
*
58814492 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTTTGATTCTGATT
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
58814557 CTG
66 CTG
*
58814560 ATTTTGATTCTG
1 ATTCTGATTCTG
58814572 TCACCTGATT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 77 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (68 bp):
ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
CTG
Found at i:58814586 original size:68 final size:67
Alignment explanation
Indices: 58814424--58814599 Score: 239
Period size: 68 Copynumber: 2.6 Consensus size: 67
58814414 TTGCATTCAC
* *
58814424 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
1 ATTCTGATTCTGATCCTATTA-CTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
58814489 CTG
65 CTG
* *
58814492 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTTTGATTCTGATT
1 ATTCTGATTCTGATCCTATTA-CTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
58814557 CTG
65 CTG
* *
58814560 ATTTTGATTCTG-TCACCTGATT-CTGATTCTGATTCTGATT
1 ATTCTGATTCTGAT--CCT-ATTACTGATACTGATTCTGATT
58814600 TTTATTTTGA
Statistics
Matches: 100, Mismatches: 5, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
67 1 0.01
68 94 0.94
69 2 0.02
70 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (67 bp):
ATTCTGATTCTGATCCTATTACTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
TG
Found at i:58816368 original size:32 final size:33
Alignment explanation
Indices: 58816326--58816390 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
58816316 AATATGCAAA
* * *
58816326 ACAGTTTGGGCTTTAGCCCTATA-AGTATCAGT
1 ACAGTCTGGGCCTTAGCCCTATACAGTAACAGT
58816358 ACAGTCTGGGCCTTAGCCCTATACAGTAACAGT
1 ACAGTCTGGGCCTTAGCCCTATACAGTAACAGT
58816391 GTGAGCCTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 21 0.72
33 8 0.28
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (33 bp):
ACAGTCTGGGCCTTAGCCCTATACAGTAACAGT
Found at i:58816398 original size:28 final size:28
Alignment explanation
Indices: 58816354--58816418 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
58816344 CTATAAGTAT
* * *
58816354 CAGT-ACAGTCTGGGCCTTAGCCCTATA
1 CAGTAACAGTCTGAGCCTAAGCCCAATA
*
58816381 CAGTAACAGTGTGAGCCTAAGCCCAATA
1 CAGTAACAGTCTGAGCCTAAGCCCAATA
*
58816409 CAGTATCAGT
1 CAGTAACAGT
58816419 ACAGTGTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 4 0.12
28 28 0.88
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTCTGAGCCTAAGCCCAATA
Found at i:58816896 original size:27 final size:27
Alignment explanation
Indices: 58816866--58816954 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
58816856 AAAAATAGTC
* *
58816866 ATTTTACCCTACAAGGGTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
58816893 ATTTTACACTACAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
* ** *
58816920 ATTTTACA-AATTGAGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGGTA
58816947 ATTTTACA
1 ATTTTACA
58816955 AATCGGGGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:58816955 original size:27 final size:27
Alignment explanation
Indices: 58816879--58816989 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
58816869 TTACCCTACA
* * * *
58816879 AGGGTATTTTGGTAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
* *
58816906 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
58816933 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
58816960 -GGGTTATTTC-AGTAATTTTACAATTCG
1 AGGG-TATTTCGA-TAATTTTACAAATCG
58816987 AGG
1 AGG
58816990 TCTTAACGAT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 4 0.05
27 65 0.89
28 4 0.05
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:58821184 original size:48 final size:48
Alignment explanation
Indices: 58820930--58821206 Score: 219
Period size: 48 Copynumber: 5.8 Consensus size: 48
58820920 GGGTTGATGA
* * ** * * * *
58820930 GATCCCGTATAAGACCATAACTGGGATATTGCATCGGCATCGATATAT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * *
58820978 GATCCCATGTAAGACTATGTTTGGGACATGGCATT-GCAATCGTTATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGC-ATCGATATGT
* * *
58821026 GATCCCATATAAGACTATGTCTGGGACATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * * *
58821074 G-TACATCGTGTAAGACCTTAG-CTGGG-CTATCGGC-TTTG-AT--ATGTGT
1 GAT-C-CCATGTAAGACCAT-GTCTGGGAC-AT-GGCATTGGCATCGATATGT
* *
58821120 GATCCTATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
** * *
58821168 GGCCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
58821207 CCCTACTATT
Statistics
Matches: 179, Mismatches: 36, Indels: 28
0.74 0.15 0.12
Matches are distributed among these distances:
44 4 0.02
45 19 0.11
46 9 0.05
47 4 0.02
48 118 0.66
49 21 0.12
50 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:58828961 original size:24 final size:23
Alignment explanation
Indices: 58828929--58829037 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
58828919 ACCAAACGTT
* **
58828929 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
58828953 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
58828977 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
58829001 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
58829025 GCACACATAGTGC
1 GCACACATAGTGC
58829038 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:58829003 original size:48 final size:48
Alignment explanation
Indices: 58828929--58829037 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
58828919 ACCAAACGTT
* **
58828929 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
58828977 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
58829025 GCACACATAGTGC
1 GCACACATAGTGC
58829038 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:58836963 original size:26 final size:28
Alignment explanation
Indices: 58836934--58837001 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
58836924 TAGTGAGTCC
58836934 GCACACTTAGTGCT-TATAATC-AACTA
1 GCACACTTAGTGCTATATAATCAAACTA
* *
58836960 GCACACTTAGTGCTATATGATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTA
58836988 GCACACTTAGTGCT
1 GCACACTTAGTGCT
58837002 GTACAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 14 0.37
27 6 0.16
28 18 0.47
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTA
Found at i:58839709 original size:24 final size:24
Alignment explanation
Indices: 58839678--58839764 Score: 147
Period size: 24 Copynumber: 3.6 Consensus size: 24
58839668 CTTATTATGT
58839678 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
58839702 TCGTACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
58839726 TCGCACACATAGTACCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
58839750 TCGCACACATAGTGC
1 TCGCACACATAGTGC
58839765 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:58847594 original size:17 final size:18
Alignment explanation
Indices: 58847564--58847597 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
58847554 AACAACTCAT
58847564 TTATTAATCTAAGATGAG
1 TTATTAATCTAAGATGAG
58847582 TTATTAA-CTAAGATGA
1 TTATTAATCTAAGATGA
58847598 ACTCAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (18 bp):
TTATTAATCTAAGATGAG
Found at i:58847608 original size:19 final size:19
Alignment explanation
Indices: 58847584--58847635 Score: 88
Period size: 19 Copynumber: 2.7 Consensus size: 19
58847574 AAGATGAGTT
58847584 ATTAACTAAGATGAACTCA
1 ATTAACTAAGATGAACTCA
58847603 ATTAACTAA-ATTGAACTCA
1 ATTAACTAAGA-TGAACTCA
58847622 ATTAACTAAGATGA
1 ATTAACTAAGATGA
58847636 CTAATTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.03
19 29 0.94
20 1 0.03
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (19 bp):
ATTAACTAAGATGAACTCA
Found at i:58852013 original size:17 final size:18
Alignment explanation
Indices: 58851967--58852015 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 18
58851957 AAATGAACTT
58851967 ATTAAACACAATTAAACACTA
1 ATTAAACAC--TTAAACAC-A
58851988 ATT-AA-ACTTAAACAC-
1 ATTAAACACTTAAACACA
58852003 ATTAAACACTTAA
1 ATTAAACACTTAA
58852016 CTTCAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
15 3 0.12
16 2 0.08
17 14 0.54
19 2 0.08
20 2 0.08
21 3 0.12
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (18 bp):
ATTAAACACTTAAACACA
Found at i:58852249 original size:17 final size:18
Alignment explanation
Indices: 58852219--58852252 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
58852209 AACAACTCAT
58852219 TTATTAATCTAAGATGAG
1 TTATTAATCTAAGATGAG
58852237 TTATTAA-CTAAGATGA
1 TTATTAATCTAAGATGA
58852253 AATCAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (18 bp):
TTATTAATCTAAGATGAG
Found at i:58852263 original size:19 final size:19
Alignment explanation
Indices: 58852239--58852290 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
58852229 AAGATGAGTT
58852239 ATTAACTAAGATGAAATCA
1 ATTAACTAAGATGAAATCA
* *
58852258 ATTAACTAAAATGAACTCA
1 ATTAACTAAGATGAAATCA
58852277 ATTAACTAAGATGA
1 ATTAACTAAGATGA
58852291 CTAATTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.27
Consensus pattern (19 bp):
ATTAACTAAGATGAAATCA
Found at i:58855993 original size:48 final size:48
Alignment explanation
Indices: 58855920--58856023 Score: 154
Period size: 48 Copynumber: 2.2 Consensus size: 48
58855910 CTCATTAGGG
* *
58855920 GATACATTGAGTTGGCTTCGAGCCATAATATTGGCAGTTCGGGTGCAA
1 GATACATTGAGTTAGCTTCGAGCCATAATATTGGCACTTCGGGTGCAA
* * * *
58855968 GATACATTGAGTTAGCTTTGGGCCATGATATTGGCACTTTGGGTGCAA
1 GATACATTGAGTTAGCTTCGAGCCATAATATTGGCACTTCGGGTGCAA
58856016 GATACATT
1 GATACATT
58856024 AAGTGTGTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (48 bp):
GATACATTGAGTTAGCTTCGAGCCATAATATTGGCACTTCGGGTGCAA
Found at i:58856088 original size:48 final size:48
Alignment explanation
Indices: 58856032--58856132 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
58856022 TTAAGTGTGT
* *
58856032 GAGATACATTGAGTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGC
1 GAGATACATTGAGTTGGCTTCGGGCCATGATATTCGCACTTAGGGTGC
* *
58856080 GAGATACATTGAGTTGGCTTCGGGCTATGATATTCGCACTTAGTGTGC
1 GAGATACATTGAGTTGGCTTCGGGCCATGATATTCGCACTTAGGGTGC
58856128 GAGAT
1 GAGAT
58856133 TCCTGAGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.31
Consensus pattern (48 bp):
GAGATACATTGAGTTGGCTTCGGGCCATGATATTCGCACTTAGGGTGC
Found at i:58859412 original size:18 final size:20
Alignment explanation
Indices: 58859389--58859427 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
58859379 GATCAATTTG
58859389 AAAATTT-ATCAAGG-TATA
1 AAAATTTGATCAAGGATATA
58859407 AAAATTTGGATCAAGGATATA
1 AAAATTT-GATCAAGGATATA
58859428 TATGCTGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
20 7 0.39
21 4 0.22
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (20 bp):
AAAATTTGATCAAGGATATA
Found at i:58861447 original size:7 final size:7
Alignment explanation
Indices: 58861432--58861466 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
58861422 GATATGCCCT
58861432 TAAACCC
1 TAAACCC
*
58861439 TAAATCC
1 TAAACCC
58861446 TAAACCC
1 TAAACCC
58861453 TAAACCC
1 TAAACCC
58861460 TAAACCC
1 TAAACCC
58861467 ATGATAATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:58865076 original size:28 final size:27
Alignment explanation
Indices: 58865035--58865147 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
58865025 AGGAAGCGTC
*
58865035 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC-AATTATCTGAT
*
58865063 CTGGTGGCTCTGCCACAAATATCT-ATT
1 CTGGTGGCTCTGCCACAATTATCTGA-T
* *
58865090 TTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
58865118 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
58865144 CTGG
1 CTGG
58865148 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 6 0.08
27 37 0.51
28 29 0.40
29 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:58872737 original size:28 final size:28
Alignment explanation
Indices: 58872696--58872795 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
58872686 AGGAAGTGTC
*
58872696 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* *
58872724 CTGGTGGCTCTGCCACATA-TATCTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* *
58872751 TTGGTGGCTCTGCCAC-GATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTG-AT
* *
58872779 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
58872796 TTATCTATTC
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 28 0.47
28 31 0.52
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:58872755 original size:27 final size:26
Alignment explanation
Indices: 58872696--58872808 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
58872686 AGGAAGTGTC
* *
58872696 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
58872724 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
58872751 TTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
58872779 CTGGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTCTGCCACATTATCTGTT
58872805 CTGG
1 CTGG
58872809 CAGCCATGTT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.49
28 31 0.41
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:58872781 original size:55 final size:54
Alignment explanation
Indices: 58872697--58872801 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 54
58872687 GGAAGTGTCC
*
58872697 TGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTTT
* * *
58872752 TGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCT
1 TGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCT
58872802 ATTCTGGCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 13 0.29
55 32 0.71
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
TGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTTT
Found at i:58874293 original size:167 final size:167
Alignment explanation
Indices: 58874012--58874339 Score: 523
Period size: 167 Copynumber: 2.0 Consensus size: 167
58874002 CAGAGGCATC
* *
58874012 CTCTCTTGTACGTATAGCATATGTCCTTGTCGTTGCCCTTGCCTCAGATTTAACTATTGAGACTT
1 CTCTCTTGTACGTATAGCATATGTCCTTGTCGGTGCCCTTGCCTCAGATTTAACCATTGAGACTT
* * * *
58874077 TTATAGCACCTCGGCTACCACCGATATTGCCGGGTAACGGGGTGATCTACCTCTCGGGGCGGGAT
66 TTATAGCACCTCGGCTACAACCGATATTGCCGGCTAACGGGGTGATCTACCTCTCGAGGAGGGAT
58874142 TACTCGGCTTCGAAGTCTGATCAGTATCTTTTTTAAA
131 TACTCGGCTTCGAAGTCTGATCAGTATCTTTTTTAAA
* *
58874179 CTCTGTTGTACGTATAGCATATGTCCTTG-CTGGTGCTCTTGCCTCAGATTTAACCATTGAGACT
1 CTCTCTTGTACGTATAGCATATGTCCTTGTC-GGTGCCCTTGCCTCAGATTTAACCATTGAGACT
* * * * *
58874243 TTTATAGCACCTTGGCTACAACTGATATTGCTGGCTGACGGGGTGATCTACCTGTCGAGGAGGGA
65 TTTATAGCACCTCGGCTACAACCGATATTGCCGGCTAACGGGGTGATCTACCTCTCGAGGAGGGA
58874308 TTACTCGGCTTCGAAGTCTGATCAGTATCTTT
130 TTACTCGGCTTCGAAGTCTGATCAGTATCTTT
58874340 CCAGATAATC
Statistics
Matches: 147, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
166 1 0.01
167 146 0.99
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (167 bp):
CTCTCTTGTACGTATAGCATATGTCCTTGTCGGTGCCCTTGCCTCAGATTTAACCATTGAGACTT
TTATAGCACCTCGGCTACAACCGATATTGCCGGCTAACGGGGTGATCTACCTCTCGAGGAGGGAT
TACTCGGCTTCGAAGTCTGATCAGTATCTTTTTTAAA
Found at i:58881027 original size:48 final size:46
Alignment explanation
Indices: 58880976--58881111 Score: 272
Period size: 46 Copynumber: 3.0 Consensus size: 46
58880966 AGTTAAATAT
58880976 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
58881022 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
58881068 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
58881112 AGATGTATAT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 90 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:58881149 original size:48 final size:46
Alignment explanation
Indices: 58880976--58881141 Score: 224
Period size: 46 Copynumber: 3.6 Consensus size: 46
58880966 AGTTAAATAT
* * *
58880976 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATATGTGATAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
* * *
58881022 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATATGTGATAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
* *
58881068 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATGTGATAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
* *
58881114 ATGTATATATGTGATAAGGCCGAATGGC
1 A--TATATATGTGATAAAGCCAAATGGC
58881142 CGATGTGATG
Statistics
Matches: 113, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
46 92 0.81
48 21 0.19
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.31
Consensus pattern (46 bp):
ATATATATGTGATAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
Found at i:58881175 original size:47 final size:47
Alignment explanation
Indices: 58881115--58881225 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
58881105 ATGTATGAGA
* * * *
58881115 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
58881162 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
58881209 TGTATA-AATGTGATAAG
1 TGTATATAA-GTGATAAG
58881226 TCCCGAGGGG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:58883843 original size:40 final size:40
Alignment explanation
Indices: 58883782--58884084 Score: 473
Period size: 40 Copynumber: 7.6 Consensus size: 40
58883772 CTCGACGATG
* * *
58883782 ATCCAGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* * **
58883822 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
58883862 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
58883902 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
**
58883942 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
58883982 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
*
58884022 ATCCGGACTAAGTTCCG-AGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
58884061 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
58884085 ATCATGCCGG
Statistics
Matches: 245, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 35 0.14
40 210 0.86
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:58884000 original size:120 final size:120
Alignment explanation
Indices: 58883782--58884100 Score: 523
Period size: 120 Copynumber: 2.7 Consensus size: 120
58883772 CTCGACGATG
* * *
58883782 ATCCAGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
*
58883847 TCATGCTAGTGACGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
66 TCATGCTAGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
*
58883902 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
* *
58883967 TCGTGCTAGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
66 TCATGCTAGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* * *
58884022 ATCCGGACTAAGTTCCG-AGAGCATTCGTGCTAGTGATATATCCGGGCTAGGTCCCGAAGAGCAA
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
**
58884086 TCATGCCGGTGACGT
66 TCATGCTAGTGACGT
58884101 GTATTCGGGC
Statistics
Matches: 185, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
119 56 0.30
120 129 0.70
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:58886799 original size:22 final size:22
Alignment explanation
Indices: 58886774--58886849 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
58886764 AAGTGTATAT
58886774 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
58886796 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
58886820 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
58886843 ATGTGAT
1 ATGTGAT
58886850 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:58886837 original size:25 final size:25
Alignment explanation
Indices: 58886766--58886838 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
58886756 GAATGTGAAA
58886766 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
58886791 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
58886813 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
58886838 G
1 G
58886839 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:58886885 original size:92 final size:93
Alignment explanation
Indices: 58886752--58886921 Score: 281
Period size: 92 Copynumber: 1.8 Consensus size: 93
58886742 ATGATGAAAT
* *
58886752 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGT
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATG-ATGTGAAAGTGT
*
58886817 ATATATGTGATAAGGCCGAATGGCCGATG
65 ATAAATGTGATAAGGCCGAATGGCCGATG
*
58886846 TGATGGATGTG-AAGTGTATATA-GTGATAAGGCCAAATGGCCAATGTGATGATGTGAAAGTGTA
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGATGTGAAAGTGTA
58886909 TAAATGTGATAAG
66 TAAATGTGATAAG
58886922 TCCCGAAGGG
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
91 24 0.33
92 27 0.38
93 11 0.15
94 10 0.14
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.29
Consensus pattern (93 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGATGTGAAAGTGTA
TAAATGTGATAAGGCCGAATGGCCGATG
Found at i:58886892 original size:45 final size:47
Alignment explanation
Indices: 58886752--58886921 Score: 274
Period size: 47 Copynumber: 3.7 Consensus size: 47
58886742 ATGATGAAAT
58886752 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
58886799 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
58886846 TGATGGATGTG-AAGTGTATATA-GTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
*
58886891 TGATG-ATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
58886922 TCCCGAAGGG
Statistics
Matches: 114, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
44 5 0.04
45 36 0.32
46 18 0.16
47 55 0.48
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:58888772 original size:40 final size:41
Alignment explanation
Indices: 58888704--58888829 Score: 125
Period size: 40 Copynumber: 3.1 Consensus size: 41
58888694 TTCGAATGGT
* ** *
58888704 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACTA-A
1 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAGTCACTATA
* *
58888744 ATCCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATA
1 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAGTCACTATA
* * * *
58888785 A-CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTAT-
1 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAGTCACTATA
58888824 ATCCGG
1 ATCCGG
58888830 TTCAATCCCG
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.04
40 66 0.93
41 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAGTCACTATA
Done.