Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 206 of 345
Found at i:59256143 original size:30 final size:30
Alignment explanation
Indices: 59256079--59256144 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
59256069 ATTGACGCTC
**
59256079 AAATAAGTTGTTAATCTTTAATTTATATTT
1 AAATAAGTTGTTAATCTTTAATTTATATCA
*
59256109 AAATAAGCTT-TTAATCTTTTATTTATATCA
1 AAATAAG-TTGTTAATCTTTAATTTATATCA
59256139 AAATAA
1 AAATAA
59256145 ATTTCTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 30 0.94
31 2 0.06
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (30 bp):
AAATAAGTTGTTAATCTTTAATTTATATCA
Found at i:59256314 original size:16 final size:15
Alignment explanation
Indices: 59256293--59256328 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
59256283 GATAAAGTGC
*
59256293 AATTTATTATTTTACT
1 AATTTATAATTTTA-T
59256309 AATTTATAATTTTAT
1 AATTTATAATTTTAT
59256324 AATTT
1 AATTT
59256329 TTAAAAAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTTATAATTTTAT
Found at i:59257329 original size:29 final size:30
Alignment explanation
Indices: 59257267--59257328 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
59257257 AGTCTCTATC
* *
59257267 TTTATAATTTTTAAAAAATTAAATTAAATT
1 TTTATAATTTTTAAAAAATCAAATGAAATT
*
59257297 TTTATAA-TTTTAAAAAATCAAAGTGGAATT
1 TTTATAATTTTTAAAAAATCAAA-TGAAATT
59257327 TT
1 TT
59257329 ACCTTTACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 14 0.50
30 14 0.50
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (30 bp):
TTTATAATTTTTAAAAAATCAAATGAAATT
Found at i:59258253 original size:79 final size:76
Alignment explanation
Indices: 59258122--59258275 Score: 218
Period size: 79 Copynumber: 2.0 Consensus size: 76
59258112 GCGTTAGTGC
* * *
59258122 AGATGTACTAAATTATGTGACAGAATATAAGTTCAAATGATATTATCTAAATAAATGAAAATAAA
1 AGATGTACTAAATTATGTGACAAAATATAAGTTCAAATGATATCAACTAAAT-AA--AAAATAAA
*
59258187 AATTAAACAAATAT
63 AATCAAACAAATAT
* *
59258201 AGATGTACTAAATTGTGTGACAAAATATAAGTTCAGATGATATCAACTAAATAAAAAATAAAAAT
1 AGATGTACTAAATTATGTGACAAAATATAAGTTCAAATGATATCAACTAAATAAAAAATAAAAAT
*
59258266 CAAATAAATA
66 CAAACAAATA
59258276 CAAATGGATA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 19 0.28
78 2 0.03
79 47 0.69
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.29
Consensus pattern (76 bp):
AGATGTACTAAATTATGTGACAAAATATAAGTTCAAATGATATCAACTAAATAAAAAATAAAAAT
CAAACAAATAT
Found at i:59261300 original size:16 final size:16
Alignment explanation
Indices: 59261279--59261309 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59261269 GATTGATTTG
59261279 TAAAATTTCAAAGTTT
1 TAAAATTTCAAAGTTT
*
59261295 TAAAATTTTAAAGTT
1 TAAAATTTCAAAGTT
59261310 GGTATCGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (16 bp):
TAAAATTTCAAAGTTT
Found at i:59262075 original size:61 final size:61
Alignment explanation
Indices: 59261980--59262101 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
59261970 AAACTGAGAT
* *
59261980 AAATTATGAGGTGCTTGATAAACTAATCCTCTCAGCCTATCTACCTAAATTACTCCCTAGG
1 AAATTATAAGGTACTTGATAAACTAATCCTCTCAGCCTATCTACCTAAATTACTCCCTAGG
* *
59262041 AAATTATAAGGTACTTGATAGACTAATCCTCTCAGTCTATCTACCTAAATTACTCCCTAGG
1 AAATTATAAGGTACTTGATAAACTAATCCTCTCAGCCTATCTACCTAAATTACTCCCTAGG
59262102 GTCGTTAATC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (61 bp):
AAATTATAAGGTACTTGATAAACTAATCCTCTCAGCCTATCTACCTAAATTACTCCCTAGG
Found at i:59264163 original size:15 final size:13
Alignment explanation
Indices: 59264129--59264166 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
59264119 ATAGATGATT
59264129 TATACATGTTAAA
1 TATACATGTTAAA
59264142 TATACATGTTAAA
1 TATACATGTTAAA
59264155 TGAATACATGTT
1 T--ATACATGTT
59264167 GTGGAAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 14 0.61
15 9 0.39
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (13 bp):
TATACATGTTAAA
Found at i:59268111 original size:16 final size:16
Alignment explanation
Indices: 59268092--59268144 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
59268082 GAGAACTAAA
59268092 TTAATAAAGAACATAC
1 TTAATAAAGAACATAC
** **
59268108 TTAATAACTATGA-A-
1 TTAATAAAGAACATAC
59268122 TTAATAAAGAACATAC
1 TTAATAAAGAACATAC
59268138 TTAATAA
1 TTAATAA
59268145 CTATGAATGT
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
14 9 0.33
15 2 0.07
16 16 0.59
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (16 bp):
TTAATAAAGAACATAC
Found at i:59268124 original size:30 final size:30
Alignment explanation
Indices: 59268090--59268152 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
59268080 TAGAGAACTA
59268090 AATTAATAAAGAACATACTTAATAACTATG
1 AATTAATAAAGAACATACTTAATAACTATG
59268120 AATTAATAAAGAACATACTTAATAACTATG
1 AATTAATAAAGAACATACTTAATAACTATG
59268150 AAT
1 AAT
59268153 GTTGCTGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.30
Consensus pattern (30 bp):
AATTAATAAAGAACATACTTAATAACTATG
Found at i:59269553 original size:19 final size:18
Alignment explanation
Indices: 59269531--59269575 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
59269521 TTAAAACTGA
59269531 AAAAAATATGTAAAATTAC
1 AAAAAATAT-TAAAATTAC
* *
59269550 AAAAAGTATTAAAATTAT
1 AAAAAATATTAAAATTAC
59269568 AAAAAATA
1 AAAAAATA
59269576 AAAAAAACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAAAAATATTAAAATTAC
Found at i:59270493 original size:8 final size:8
Alignment explanation
Indices: 59270476--59270536 Score: 50
Period size: 8 Copynumber: 7.2 Consensus size: 8
59270466 AAACTGTATA
*
59270476 TTTATATT
1 TTTATTTT
59270484 TTTATTTTT
1 TTTA-TTTT
59270493 TTTATTTT
1 TTTATTTT
* **
59270501 TATAAGTT
1 TTTATTTT
59270509 TTTATGTTT
1 TTTAT-TTT
*
59270518 TTAATTTTT
1 TTTA-TTTT
59270527 TTTATTTT
1 TTTATTTT
59270535 TT
1 TT
59270537 AATAGATTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
8 22 0.54
9 18 0.44
10 1 0.02
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (8 bp):
TTTATTTT
Found at i:59270528 original size:10 final size:9
Alignment explanation
Indices: 59270482--59270536 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
59270472 TATATTTATA
59270482 TTTTTATTT
1 TTTTTATTT
59270491 TTTTTA-TT
1 TTTTTATTT
* **
59270499 TTTATA-AG
1 TTTTTATTT
*
59270507 TTTTTATGT
1 TTTTTATTT
*
59270516 TTTTAATTT
1 TTTTTATTT
59270525 TTTTTATTT
1 TTTTTATTT
59270534 TTT
1 TTT
59270537 AATAGATTTT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
8 12 0.33
9 24 0.67
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (9 bp):
TTTTTATTT
Found at i:59270546 original size:18 final size:17
Alignment explanation
Indices: 59270491--59270547 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 17
59270481 ATTTTTATTT
59270491 TTTTTA-TTTTT-ATAA
1 TTTTTATTTTTTAATAA
**
59270506 GTTTTTATGTTTTTAATTT
1 -TTTTTAT-TTTTTAATAA
59270525 TTTTTATTTTTTAATAGA
1 TTTTTATTTTTTAATA-A
59270543 TTTTT
1 TTTTT
59270548 TAGGTTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 6 0.18
17 8 0.24
18 17 0.52
19 2 0.06
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (17 bp):
TTTTTATTTTTTAATAA
Found at i:59270799 original size:18 final size:18
Alignment explanation
Indices: 59270778--59270814 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
59270768 ATGAAGTGTA
59270778 TATTAATACTATATTATT
1 TATTAATACTATATTATT
59270796 TATTAATACTATATTATT
1 TATTAATACTATATTATT
59270814 T
1 T
59270815 GTAATTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTAATACTATATTATT
Found at i:59272148 original size:43 final size:43
Alignment explanation
Indices: 59272100--59272200 Score: 193
Period size: 43 Copynumber: 2.3 Consensus size: 43
59272090 TACCCCAGGG
59272100 GACACACGACCGTGTAACGTGAGCGTGTGTCGTACACAGCTGA
1 GACACACGACCGTGTAACGTGAGCGTGTGTCGTACACAGCTGA
59272143 GACACACGACCGTGTAACGTGAGCGTGTGTCGTACACAGCTGA
1 GACACACGACCGTGTAACGTGAGCGTGTGTCGTACACAGCTGA
*
59272186 GACACACGCCCGTGT
1 GACACACGACCGTGT
59272201 CTCTACCTGT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.25, C:0.28, G:0.30, T:0.18
Consensus pattern (43 bp):
GACACACGACCGTGTAACGTGAGCGTGTGTCGTACACAGCTGA
Found at i:59273090 original size:22 final size:22
Alignment explanation
Indices: 59273058--59273123 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
59273048 ATTAAGCTAG
59273058 GAACGGGAAGCTTTATTGAGCT
1 GAACGGGAAGCTTTATTGAGCT
* * *
59273080 GAATGGGAAGCTCTATTGAGTT
1 GAACGGGAAGCTTTATTGAGCT
*
59273102 GAACGAGAAGCTCTTA-TGAGCT
1 GAACGGGAAGCT-TTATTGAGCT
59273124 ATGGTGAGTC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 34 0.94
23 2 0.06
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (22 bp):
GAACGGGAAGCTTTATTGAGCT
Found at i:59290494 original size:22 final size:22
Alignment explanation
Indices: 59290466--59290531 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
59290456 TTAAGCTGGG
59290466 AACGGGAAGCTTTATTGAGCTA
1 AACGGGAAGCTTTATTGAGCTA
* *
59290488 AACGGGAAGCTCTATTGAGCTG
1 AACGGGAAGCTTTATTGAGCTA
**
59290510 AACGAAAAGCTCTTA-TGAGCTA
1 AACGGGAAGCT-TTATTGAGCTA
59290532 TGGTCAGTCC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
22 35 0.95
23 2 0.05
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (22 bp):
AACGGGAAGCTTTATTGAGCTA
Found at i:59293139 original size:16 final size:16
Alignment explanation
Indices: 59293104--59293141 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
59293094 TTATCAAAAC
*
59293104 ATAATTTAAATTATAT
1 ATAATTTAAATTATAA
59293120 ATAACTTTAAATT-TAA
1 ATAA-TTTAAATTATAA
59293136 ATAATT
1 ATAATT
59293142 CAAAATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 10 0.50
17 8 0.40
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAATTTAAATTATAA
Found at i:59296529 original size:19 final size:19
Alignment explanation
Indices: 59296505--59296542 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
59296495 TTTAGGTTTC
59296505 TTTAATAGTTCGAAAACTG
1 TTTAATAGTTCGAAAACTG
59296524 TTTAATAGTTCGAAAACTG
1 TTTAATAGTTCGAAAACTG
59296543 ACTTGTTCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
TTTAATAGTTCGAAAACTG
Found at i:59297831 original size:53 final size:54
Alignment explanation
Indices: 59297745--59297905 Score: 209
Period size: 55 Copynumber: 3.0 Consensus size: 54
59297735 TATTTTTTGG
* *
59297745 GGTGCTGGGACACTGATGGTCGACACTCCAGTACTAGATTTAAAAAAAAATT-A
1 GGTGCTGGGACACTGATGGTCGGCACTCCAGTACCAGATTTAAAAAAAAATTGA
* * * *
59297798 TGTGCTGGGACACTGATGGCCGGCAC-CCTAGTACCAGAATTTTAAAAAAAATTGG
1 GGTGCTGGGACACTGATGGTCGGCACTCC-AGTACCAG-ATTTAAAAAAAAATTGA
* *
59297853 GGTGCTAGGACACTGATGGTCGGAACTCCAGTACCAGATTTAAAAAAATAATT
1 GGTGCTGGGACACTGATGGTCGGCACTCCAGTACCAGATTTAAAAAAA-AATT
59297906 CTTTTTTGAG
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
52 2 0.02
53 30 0.33
54 24 0.26
55 34 0.37
56 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (54 bp):
GGTGCTGGGACACTGATGGTCGGCACTCCAGTACCAGATTTAAAAAAAAATTGA
Found at i:59297867 original size:55 final size:54
Alignment explanation
Indices: 59297741--59297900 Score: 209
Period size: 53 Copynumber: 3.0 Consensus size: 54
59297731 TATATATTTT
* * *
59297741 TTGGGGTGCTGGGACACTGATGGTCGACACTCCAGTACTAGATTTAAAAAAAAA
1 TTGGGGTGCTGGGACACTGATGGTCGGCACTCCAGTACCAGATTTTAAAAAAAA
** *
59297795 TT-ATGTGCTGGGACACTGATGGCCGGCAC-CCTAGTACCAGAATTTTAAAAAAAA
1 TTGGGGTGCTGGGACACTGATGGTCGGCACTCC-AGTACCAG-ATTTTAAAAAAAA
* *
59297849 TTGGGGTGCTAGGACACTGATGGTCGGAACTCCAGTACCAGA-TTTAAAAAAA
1 TTGGGGTGCTGGGACACTGATGGTCGGCACTCCAGTACCAGATTTTAAAAAAA
59297901 TAATTCTTTT
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
52 2 0.02
53 40 0.44
54 17 0.19
55 30 0.33
56 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (54 bp):
TTGGGGTGCTGGGACACTGATGGTCGGCACTCCAGTACCAGATTTTAAAAAAAA
Found at i:59304174 original size:71 final size:71
Alignment explanation
Indices: 59303997--59304403 Score: 504
Period size: 71 Copynumber: 5.7 Consensus size: 71
59303987 AGATAATTTA
* * * *
59303997 AAAAAAGAAATAGTTAAAGGATAAATCAATTTAAAGGAATAAATGTAAAATGTTTTAAAAAATAA
1 AAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAAT-TTAAA--TTTTAAAAAATTA
59304062 AATTTAATT
63 AATTTAATT
*
59304071 AAGAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAAATTGA
1 AA-AAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTT-AAAAAATTAA
59304136 ATTTAATT
64 ATTTAATT
* *
59304144 -AAAAAGAAATAATTAAAGGATAAATCAATTTAAAGGAATAAATTTAAA-TTTAAAAAATCAAAT
1 AAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAATTAAAT
59304207 TTAATT
66 TTAATT
* * *
59304213 GAAAAAATAAAAAAATT-AAGGATAAATTAATTTAAAGGAATAAATTTAAAATTT-AAAAA-TAT
1 -AAAAAA-GAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAATTA-
59304275 AATTTAATT
63 AATTTAATT
* * **
59304284 AAAAAAGAAATAATTAAAGGATAAATTACTTTTAAGGAATAAATTTAAATTTT-AAAAATTGTAT
1 AAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAATTAAAT
59304348 TTAATT
66 TTAATT
* * * *
59304354 -AAAAATAAATAATTTAAGGATAAATTTAAATTTTAAGAAATAGAATTTAA
1 AAAAAAGAAATAATTAAAGGATAAA-TT-AATTTAAAGGAATA-AATTTAA
59304404 TTAAAAAAGA
Statistics
Matches: 298, Mismatches: 23, Indels: 26
0.86 0.07 0.07
Matches are distributed among these distances:
69 45 0.15
70 59 0.20
71 110 0.37
72 22 0.07
73 16 0.05
74 6 0.02
75 40 0.13
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.33
Consensus pattern (71 bp):
AAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAAAAAATTAAAT
TTAATT
Found at i:59304217 original size:19 final size:20
Alignment explanation
Indices: 59304183--59304220 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
59304173 TTAAAGGAAT
*
59304183 AAATTTAAATTTAAAAAATC
1 AAATTTAAATTGAAAAAATC
59304203 AAATTT-AATTGAAAAAAT
1 AAATTTAAATTGAAAAAAT
59304221 AAAAAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (20 bp):
AAATTTAAATTGAAAAAATC
Found at i:59304267 original size:21 final size:20
Alignment explanation
Indices: 59304241--59304281 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
59304231 AGGATAAATT
59304241 AATTTAAAGGAATA-AATTTAA
1 AATTTAAA--AATATAATTTAA
59304262 AATTTAAAAATATAATTTAA
1 AATTTAAAAATATAATTTAA
59304282 TTAAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
21 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
AATTTAAAAATATAATTTAA
Found at i:59304401 original size:142 final size:142
Alignment explanation
Indices: 59303997--59304403 Score: 543
Period size: 141 Copynumber: 2.8 Consensus size: 142
59303987 AGATAATTTA
* *
59303997 AAAAAAGAAATAGTTAAAGGATAAATCAATTTAAAGGAATAAATGTAAAATGTTTTAAAAAATAA
1 AAAAAAGAAATAATTAAAGGATAAATCAATTTAAAGGAATAAAT-TTAAA--TTTT-AAAAATAA
* * *
59304062 AATTTAATTAAGAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTAA
62 AATTTAATTAA-AAAATAAATAATTTAAGGATAAATTAATTTAAAGGAATAAATTTAAAATTTAA
59304127 AAAAATTGAATTTAATT
126 AAAAATTGAATTTAATT
* *
59304144 -AAAAAGAAATAATTAAAGGATAAATCAATTTAAAGGAATAAATTTAAATTTAAAAAATCAAATT
1 AAAAAAGAAATAATTAAAGGATAAATCAATTTAAAGGAATAAATTTAAATTTTAAAAATAAAATT
* * *
59304208 TAATTGAAAAAATAAAAAAATTAAGGATAAATTAATTTAAAGGAATAAATTTAAAATTTAAAAAT
66 TAATT-AAAAAATAAATAATTTAAGGATAAATTAATTTAAAGGAATAAATTTAAAATTTAAAAAA
59304273 A-T-AATTTAATT
130 ATTGAATTTAATT
* * * ***
59304284 AAAAAAGAAATAATTAAAGGATAAATTACTTTTAAGGAATAAATTTAAATTTTAAAAATTGTATT
1 AAAAAAGAAATAATTAAAGGATAAATCAATTTAAAGGAATAAATTTAAATTTTAAAAATAAAATT
* *
59304349 TAATT-AAAAATAAATAATTTAAGGATAAATTTAAATTTTAAGAAATAGAATTTAA
66 TAATTAAAAAATAAATAATTTAAGGATAAA-TT-AATTTAAAGGAATA-AATTTAA
59304404 TTAAAAAAGA
Statistics
Matches: 234, Mismatches: 21, Indels: 15
0.87 0.08 0.06
Matches are distributed among these distances:
139 22 0.09
140 11 0.05
141 75 0.32
142 75 0.32
143 5 0.02
145 4 0.02
146 42 0.18
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.33
Consensus pattern (142 bp):
AAAAAAGAAATAATTAAAGGATAAATCAATTTAAAGGAATAAATTTAAATTTTAAAAATAAAATT
TAATTAAAAAATAAATAATTTAAGGATAAATTAATTTAAAGGAATAAATTTAAAATTTAAAAAAA
TTGAATTTAATT
Found at i:59304806 original size:30 final size:30
Alignment explanation
Indices: 59304771--59304836 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
59304761 ATGCAGGTGT
59304771 CACACGACCATGTGACTCACAAGGCTGAGA
1 CACACGACCATGTGACTCACAAGGCTGAGA
** * * *
59304801 CACACGGTCGTGTGACTCACACGGTTGAGA
1 CACACGACCATGTGACTCACAAGGCTGAGA
*
59304831 TACACG
1 CACACG
59304837 TCTGTGTCCC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGACCATGTGACTCACAAGGCTGAGA
Found at i:59305893 original size:38 final size:38
Alignment explanation
Indices: 59305829--59305901 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
59305819 TTATTACACT
* **
59305829 GGCAATAAGCCTGCTATGCATTAAGCCTGAATAACATC
1 GGCAATAAGCCTGCTAGGCACAAAGCCTGAATAACATC
*
59305867 GGCACTAAGCCTGCTAGGCACAAAGCCTGAATAAC
1 GGCAATAAGCCTGCTAGGCACAAAGCCTGAATAAC
59305902 CATATAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (38 bp):
GGCAATAAGCCTGCTAGGCACAAAGCCTGAATAACATC
Found at i:59310226 original size:53 final size:54
Alignment explanation
Indices: 59310082--59310230 Score: 174
Period size: 53 Copynumber: 2.8 Consensus size: 54
59310072 TAGACTAATG
* * * * *
59310082 GGGTGTCGACAATCAGTATCCTAGCACCCCAAATTTTTTTAAAAATTTGGTACTG
1 GGGTGCCGACCATCAGTGTCCTAGCA-CCCAAATTTTTTTAAAAATCTGGTACTA
* * * **
59310137 GGGTGCCGACCATCAGTGTCCCAACA-CCTAATTTTTTTTTAAATCTGGTACTA
1 GGGTGCCGACCATCAGTGTCCTAGCACCCAAATTTTTTTAAAAATCTGGTACTA
* *
59310190 GGGTGCCGGCCATCAGTGTTCTAGCACCCAAATTTTTTTAA
1 GGGTGCCGACCATCAGTGTCCTAGCACCCAAATTTTTTTAA
59310231 TTTTAAAAGA
Statistics
Matches: 76, Mismatches: 17, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
53 44 0.58
54 11 0.14
55 21 0.28
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (54 bp):
GGGTGCCGACCATCAGTGTCCTAGCACCCAAATTTTTTTAAAAATCTGGTACTA
Found at i:59314976 original size:30 final size:30
Alignment explanation
Indices: 59314940--59315038 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
59314930 CTAGCCTTTG
*
59314940 CCACCACCAACTCCACTAACCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
59314970 CCACCACCAAATCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
59315000 TCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
59315030 CCACCACCA
1 CCACCACCA
59315039 CTTGTACCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.28, C:0.48, G:0.05, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:59316646 original size:28 final size:28
Alignment explanation
Indices: 59316611--59316667 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
59316601 AGGGGTATAT
59316611 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAGGGGTAATTTC
59316639 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAGGGGTAATTTC
59316667 G
1 G
59316668 TGATCTACGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.46
Consensus pattern (28 bp):
GGTAATTTTGCTCTTTAGGGGTAATTTC
Found at i:59318316 original size:20 final size:20
Alignment explanation
Indices: 59318293--59318330 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
59318283 CACATCCAAA
*
59318293 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
59318313 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
59318331 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:59324649 original size:28 final size:28
Alignment explanation
Indices: 59324603--59324671 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
59324593 TTTAAAACCC
*
59324603 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
59324630 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
59324658 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
59324672 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:59326320 original size:20 final size:20
Alignment explanation
Indices: 59326297--59326334 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
59326287 CACATCCAAA
*
59326297 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
59326317 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
59326335 GTGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:59326419 original size:21 final size:24
Alignment explanation
Indices: 59326395--59326442 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
59326385 CTTTTTTTTG
59326395 TTATTAT-TATATT-TTTTAATAT
1 TTATTATATATATTCTTTTAATAT
59326417 TATATATATATATATTCTTTTAATAT
1 T-TAT-TATATATATTCTTTTAATAT
59326443 ATTAGGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 1 0.05
23 3 0.14
24 3 0.14
25 6 0.27
26 9 0.41
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATTATATATATTCTTTTAATAT
Found at i:59326501 original size:27 final size:26
Alignment explanation
Indices: 59326471--59326531 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
59326461 TCTATATTAC
*
59326471 ATATATATATT-ATACTATTTTATGT
1 ATATATATATTAATACTATATTATGT
* *
59326496 ATATATCT-TTAATACTATATTATTT
1 ATATATATATTAATACTATATTATGT
59326521 ATATATATATT
1 ATATATATATT
59326532 TTTTTCTACA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 2 0.07
25 26 0.87
26 2 0.07
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (26 bp):
ATATATATATTAATACTATATTATGT
Found at i:59326569 original size:22 final size:23
Alignment explanation
Indices: 59326544--59326610 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 23
59326534 TTTCTACATG
*
59326544 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
59326566 TTATATTATGTATGTATATTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
59326591 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
59326611 TTTTATATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
22 11 0.28
23 7 0.18
24 9 0.23
25 12 0.31
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:59333452 original size:46 final size:47
Alignment explanation
Indices: 59333402--59333529 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 47
59333392 GGTTGAGCAT
59333402 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G-TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAGATC
* * *
59333448 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G-ATC
59333495 CGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
59333530 GCGGGTTACA
Statistics
Matches: 69, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 27 0.39
47 29 0.42
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAGATC
Found at i:59341665 original size:18 final size:19
Alignment explanation
Indices: 59341634--59341670 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
59341624 AAATTAAAGT
59341634 ATTAATTCAACT-AATTAA
1 ATTAATTCAACTAAATTAA
59341652 ATTAATT-AACCTAAATTAA
1 ATTAATTCAA-CTAAATTAA
59341671 CCAAATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.12
18 9 0.53
19 6 0.35
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTAATTCAACTAAATTAA
Found at i:59343671 original size:40 final size:37
Alignment explanation
Indices: 59343614--59343817 Score: 194
Period size: 40 Copynumber: 5.1 Consensus size: 37
59343604 TCGAATGATG
*
59343614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGT-ACTA-A
*
59343654 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAG-TACTAA
*
59343693 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTCACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGT-ACT-AA
*
59343733 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAG-TACTA-A
* * **
59343773 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTA-CTA-A
59343813 TCCGG
1 TCCGG
59343818 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 12, Indels: 22
0.81 0.07 0.13
Matches are distributed among these distances:
38 1 0.01
39 37 0.26
40 93 0.66
41 10 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (37 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTACTAA
Found at i:59343749 original size:79 final size:81
Alignment explanation
Indices: 59343614--59343798 Score: 252
Period size: 79 Copynumber: 2.3 Consensus size: 81
59343604 TCGAATGATG
* *
59343614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
59343678 TGTGCGAGCTACTA-A
66 TGTGCGAGCTACTATA
* ** *
59343693 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTCACTAAATCCGGGTTAAGTTCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCAT
*
59343756 TTGTGCGAGTTACTATA
65 TTGTGCGAGCTACTATA
* *
59343773 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
59343799 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
79 60 0.65
80 33 0.35
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGCTACTATA
Found at i:59343820 original size:79 final size:79
Alignment explanation
Indices: 59343615--59343827 Score: 247
Period size: 79 Copynumber: 2.7 Consensus size: 79
59343605 CGAATGATGT
* * *
59343615 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGTTCCGAAGGCATT
*
59343678 TGTGCGAGCTACTAATT
63 TGTGCGAGCTACTAATA
*
59343695 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTCA-CTAAATCCGGGTTAAGTTCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-AGCTATATCC-GGTTAAGTTCCGAAGGCATTT
*
59343758 GTGCGAGTTACT-ATAA
64 GTGCGAGCTACTAAT-A
* ** *
59343774 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTTCCG
59343828 TGTGACATCC
Statistics
Matches: 115, Mismatches: 11, Indels: 15
0.82 0.08 0.11
Matches are distributed among these distances:
78 2 0.02
79 68 0.59
80 45 0.39
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTTCCGAAGGCATTTGT
GCGAGCTACTAATA
Found at i:59345498 original size:30 final size:30
Alignment explanation
Indices: 59345462--59345592 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
59345452 GACAAGATTG
* * * * *
59345462 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
59345492 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
59345520 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
59345550 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
59345579 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
59345593 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:59345553 original size:58 final size:58
Alignment explanation
Indices: 59345462--59345592 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
59345452 GACAAGATTG
* * * * * *
59345462 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
59345520 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
59345579 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
59345593 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:59353442 original size:30 final size:30
Alignment explanation
Indices: 59353406--59353536 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
59353396 GACAAGATTG
* * * * *
59353406 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
59353436 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
59353464 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
59353494 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
59353523 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
59353537 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:59353497 original size:58 final size:58
Alignment explanation
Indices: 59353406--59353536 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
59353396 GACAAGATTG
* * * * * *
59353406 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
59353464 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
59353523 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
59353537 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:59357170 original size:22 final size:22
Alignment explanation
Indices: 59357142--59357187 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
59357132 TTGATATACT
59357142 GCATTTAAACTCTAGTATCCAG
1 GCATTTAAACTCTAGTATCCAG
59357164 GCATTTAAACTCTAGTATCCAG
1 GCATTTAAACTCTAGTATCCAG
59357186 GC
1 GC
59357188 TAAGGTAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (22 bp):
GCATTTAAACTCTAGTATCCAG
Found at i:59357661 original size:2 final size:2
Alignment explanation
Indices: 59357656--59357685 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
59357646 ATTATATACA
59357656 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59357686 GCATGTAGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:59357871 original size:31 final size:31
Alignment explanation
Indices: 59357826--59357901 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
59357816 AATAGATATG
* **
59357826 TATATA-AATA-ATATATTTATGCGTCTTGT
1 TATATATAATATATATATTTATGCGTCATAA
*
59357855 TATATATAATATATATATTTATGGGTCATAA
1 TATATATAATATATATATTTATGCGTCATAA
*
59357886 AATATATAATATATAT
1 TATATATAATATATAT
59357902 GCGCTTGAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 6 0.15
30 4 0.10
31 30 0.75
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (31 bp):
TATATATAATATATATATTTATGCGTCATAA
Found at i:59358927 original size:17 final size:17
Alignment explanation
Indices: 59358907--59358960 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
59358897 CGATGTGGTA
* *
59358907 TGAATGAATTATTATAT
1 TGAATGAAATGTTATAT
59358924 TGAATGAAATGTTATAT
1 TGAATGAAATGTTATAT
** *
59358941 TCTATGAACTGTTATAT
1 TGAATGAAATGTTATAT
59358958 TGA
1 TGA
59358961 GCGAACTGTT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.44
Consensus pattern (17 bp):
TGAATGAAATGTTATAT
Found at i:59358982 original size:34 final size:34
Alignment explanation
Indices: 59358918--59358987 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 34
59358908 GAATGAATTA
* *
59358918 TTATATTGAATGAAATGTTATATTCTATGAACTG
1 TTATATTGAACGAAATGTTATATGCTATGAACTG
* * *
59358952 TTATATTGAGCGAACTGTTATTATGC-ATGAATTG
1 TTATATTGAACGAAATGTTA-TATGCTATGAACTG
59358986 TT
1 TT
59358988 TTTTCATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.44
Consensus pattern (34 bp):
TTATATTGAACGAAATGTTATATGCTATGAACTG
Found at i:59362643 original size:11 final size:11
Alignment explanation
Indices: 59362629--59362714 Score: 88
Period size: 11 Copynumber: 7.9 Consensus size: 11
59362619 TTTTCTCTTA
59362629 TTCTTCTTCTC
1 TTCTTCTTCTC
* *
59362640 TTCTTTTTCTT
1 TTCTTCTTCTC
*
59362651 TTCTTTTTCTTC
1 TTCTTCTTC-TC
59362663 TTCTTCTTCTC
1 TTCTTCTTCTC
59362674 TAT-TTCTTCTC
1 T-TCTTCTTCTC
59362685 TTCTT-TT-TC
1 TTCTTCTTCTC
*
59362694 TTCTTTTTCTC
1 TTCTTCTTCTC
*
59362705 TTATTCTTCT
1 TTCTTCTTCT
59362715 ACCGTCCAAG
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
9 7 0.11
10 5 0.08
11 42 0.66
12 10 0.16
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (11 bp):
TTCTTCTTCTC
Found at i:59362667 original size:31 final size:32
Alignment explanation
Indices: 59362629--59362714 Score: 113
Period size: 34 Copynumber: 2.7 Consensus size: 32
59362619 TTTTCTCTTA
* *
59362629 TTCTTCTTCTCTTCTTT-TTCTTTTCTTTTTC
1 TTCTTCTTCTCTTATTTCTTCTCTTCTTTTTC
59362660 TTCTTCTTCTTCTCTATTTCTTCTCTTCTTTTTC
1 TTCTTCTTC-TCT-TATTTCTTCTCTTCTTTTTC
*
59362694 TTCTTTTTCTCTTA-TTCTTCT
1 TTCTTCTTCTCTTATTTCTTCT
59362715 ACCGTCCAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
31 16 0.33
32 5 0.10
33 7 0.14
34 21 0.43
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (32 bp):
TTCTTCTTCTCTTATTTCTTCTCTTCTTTTTC
Found at i:59362680 original size:14 final size:15
Alignment explanation
Indices: 59362624--59362703 Score: 57
Period size: 14 Copynumber: 5.8 Consensus size: 15
59362614 TTCCGTTTTC
* *
59362624 TCTTATTCTTCT-TC
1 TCTTCTTCTTCTATT
*
59362638 TCTTCTTTTTCT-TT
1 TCTTCTTCTTCTATT
*
59362652 TCTTTTTCTTC---T
1 TCTTCTTCTTCTATT
59362664 TCTTCTTC-TCTATT
1 TCTTCTTCTTCTATT
*
59362678 TCTTC-TCTTCTTTT
1 TCTTCTTCTTCTATT
*
59362692 TCTTCTTTTTCT
1 TCTTCTTCTTCT
59362704 CTTATTCTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
11 2 0.04
12 8 0.15
13 2 0.04
14 36 0.68
15 5 0.09
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTTCTTCTTCTATT
Found at i:59362689 original size:45 final size:42
Alignment explanation
Indices: 59362632--59362714 Score: 130
Period size: 45 Copynumber: 1.9 Consensus size: 42
59362622 TCTCTTATTC
*
59362632 TTCTTCTCTTCTTTTTCTTTTCTTTTTCTTCTTCTTCTTCTCTAT
1 TTCTTCTCTTCTTTTTC--TTCTTTTTC-TCTTATTCTTCTCTAT
59362677 TTCTTCTCTTCTTTTTCTTCTTTTTCTCTTATTCTTCT
1 TTCTTCTCTTCTTTTTCTTCTTTTTCTCTTATTCTTCT
59362715 ACCGTCCAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 11 0.30
43 9 0.24
45 17 0.46
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (42 bp):
TTCTTCTCTTCTTTTTCTTCTTTTTCTCTTATTCTTCTCTAT
Found at i:59365620 original size:23 final size:23
Alignment explanation
Indices: 59365590--59365636 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
59365580 AATAATGAAG
59365590 AACACTCTGAAGTCTATTTACTA
1 AACACTCTGAAGTCTATTTACTA
59365613 AACACTCTGAAGTCTATTTACTA
1 AACACTCTGAAGTCTATTTACTA
59365636 A
1 A
59365637 CATTTTGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (23 bp):
AACACTCTGAAGTCTATTTACTA
Found at i:59369342 original size:29 final size:29
Alignment explanation
Indices: 59369300--59369358 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
59369290 TGAATTTTAA
* *
59369300 AATTCACCAAAAATCGTACAACAATAATT
1 AATTCACCAAAAATCATACAAAAATAATT
59369329 AATTCACCAAAAATCATACAAAAATAATT
1 AATTCACCAAAAATCATACAAAAATAATT
59369358 A
1 A
59369359 GGAGTTTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.56, C:0.19, G:0.02, T:0.24
Consensus pattern (29 bp):
AATTCACCAAAAATCATACAAAAATAATT
Found at i:59377505 original size:31 final size:31
Alignment explanation
Indices: 59377470--59377565 Score: 192
Period size: 31 Copynumber: 3.1 Consensus size: 31
59377460 GTGTAAAGTG
59377470 TAAAAGTTGTGTTCTAATAGCTAAAGGTGTC
1 TAAAAGTTGTGTTCTAATAGCTAAAGGTGTC
59377501 TAAAAGTTGTGTTCTAATAGCTAAAGGTGTC
1 TAAAAGTTGTGTTCTAATAGCTAAAGGTGTC
59377532 TAAAAGTTGTGTTCTAATAGCTAAAGGTGTC
1 TAAAAGTTGTGTTCTAATAGCTAAAGGTGTC
59377563 TAA
1 TAA
59377566 TAGCTATGGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.35
Consensus pattern (31 bp):
TAAAAGTTGTGTTCTAATAGCTAAAGGTGTC
Found at i:59377566 original size:17 final size:17
Alignment explanation
Indices: 59377482--59377571 Score: 70
Period size: 17 Copynumber: 5.6 Consensus size: 17
59377472 AAAGTTGTGT
59377482 TCTAATAGCTAAAGGTG
1 TCTAATAGCTAAAGGTG
* *
59377499 TCTAAAAG-T---TGTG
1 TCTAATAGCTAAAGGTG
59377512 TTCTAATAGCTAAAGGTG
1 -TCTAATAGCTAAAGGTG
* *
59377530 TCTAAAAG-T---TGTG
1 TCTAATAGCTAAAGGTG
59377543 TTCTAATAGCTAAAGGTG
1 -TCTAATAGCTAAAGGTG
59377561 TCTAATAGCTA
1 TCTAATAGCTA
59377572 TGGAACCTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 20
0.66 0.10 0.24
Matches are distributed among these distances:
13 6 0.11
14 14 0.25
15 2 0.04
16 2 0.04
17 25 0.45
18 6 0.11
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.34
Consensus pattern (17 bp):
TCTAATAGCTAAAGGTG
Found at i:59382896 original size:16 final size:16
Alignment explanation
Indices: 59382875--59382909 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
59382865 TGCTAGTTGT
59382875 TTTCATT-TTATTTTTA
1 TTTCATTGTTA-TTTTA
59382891 TTTCATTGTTATTTTA
1 TTTCATTGTTATTTTA
59382907 TTT
1 TTT
59382910 ACTCATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTCATTGTTATTTTA
Found at i:59386814 original size:25 final size:25
Alignment explanation
Indices: 59386768--59386816 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
59386758 CTGTTTTTGA
*
59386768 TAGTATATCCTAAAACTGCTATAGG
1 TAGTATATCCTAAAACTACTATAGG
* * *
59386793 TAGTATATGCTGAGACTACTATAG
1 TAGTATATCCTAAAACTACTATAG
59386817 ATAGACTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (25 bp):
TAGTATATCCTAAAACTACTATAGG
Found at i:59400050 original size:46 final size:47
Alignment explanation
Indices: 59399770--59400178 Score: 260
Period size: 46 Copynumber: 8.7 Consensus size: 47
59399760 GGAATAATGC
*
59399770 CGATGCCATGTCCTAGACATGGTCTTACACTGGCT-CATCT-ATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCAT--AGT
* * ** * *
59399817 CGATGCCATGTCCCAGACATGTTCTTACACTGACTATCAAAATC-GAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATCTCATAGT
* * * *
59399865 CTGACGCCATGTCCCAGACATGGTCTTACACTAGCTTTCACATATCCAT-GC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGC--T-ACATCT-CATAGT
* * * * * *
59399916 CGATACCATGTCTCAGACCTGGTCTTACA-TTGATACCTCT-ATATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCATA-GT
*
59399962 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCATAGT
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCATAGT
* *
59400010 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTC-GAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATCTCATAGT
* * * * * *
59400055 CTGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTTTCA-ATGC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACATCTCATA-GT
* *
59400102 CGATGCCATGTCCCAGACATGGTCTTACATTGGCT-C-TCATAAT-GT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATC-TCATAGT
59400147 GGCAGATG-CATGTCCCAGACAT-GTCTTACACT
1 --C-GATGCCATGTCCCAGACATGGTCTTACACT
59400179 AGCACACAAA
Statistics
Matches: 287, Mismatches: 46, Indels: 59
0.73 0.12 0.15
Matches are distributed among these distances:
44 14 0.05
45 20 0.07
46 67 0.23
47 63 0.22
48 52 0.18
49 36 0.13
50 29 0.10
51 5 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCATAGT
Found at i:59400155 original size:94 final size:97
Alignment explanation
Indices: 59399771--59400186 Score: 382
Period size: 94 Copynumber: 4.4 Consensus size: 97
59399761 GAATAATGCC
* * *
59399771 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCATC-TATCAA-GTCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-CATATCAATGCCGATGCCATGTCCCAGA
* * * *
59399834 CATGTTCTTACACTGACTATCAAAATCGAGGCT
65 CATGGTCTTACACTGGCTCTCATAATCGAGGCT
* * * *
59399867 GACGCCATGTCCCAGACATGGTCTTACACTAGCTTTCACATATCCATGCCGATACCATGTCTCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC--TCACATATCAATGCCGATGCCATGTCCCAG
* * * * *
59399932 ACCTGGTCTTACA-TTGATACCTC-TATAT-G-TGCC
64 ACATGGTCTTACACTGGCT--CTCATA-ATCGAGGCT
* * *
59399965 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC-ATAGTCGATG-CATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAT-GCCGATGCCATGTCCCAGA
*
59400026 CAT-GTCTTACACTGGCT-TACAT-CTCGAGGCT
65 CATGGTCTTACACTGGCTCT-CATAATCGAGGCT
* * * *
59400057 GATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTTTCAATGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAGAC
* * *
59400120 ATGGTCTTACATTGGCTCTCATAAT-GTGGCA
66 ATGGTCTTACACTGGCTCTCATAATCGAGGCT
*
59400151 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
59400187 AATGACCCAA
Statistics
Matches: 258, Mismatches: 42, Indels: 42
0.75 0.12 0.12
Matches are distributed among these distances:
90 12 0.05
91 16 0.06
92 26 0.10
93 33 0.13
94 64 0.25
95 2 0.01
96 30 0.12
97 2 0.01
98 41 0.16
99 28 0.11
100 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (97 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCATAATCGAGGCT
Found at i:59404760 original size:43 final size:43
Alignment explanation
Indices: 59404697--59404807 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
59404687 TGGCATTACG
59404697 CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAA
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAA
* * *
59404740 CCTGCTAGGCACGAATGCCCGAATACACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAA
*
59404783 CCTGCTAGGCACTAAGGCCCGAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
59404808 TAATACCAAC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.32, C:0.34, G:0.23, T:0.12
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAA
Found at i:59404848 original size:38 final size:37
Alignment explanation
Indices: 59404800--59405039 Score: 228
Period size: 38 Copynumber: 6.3 Consensus size: 37
59404790 GGCACTAAGG
* * * *
59404800 CCCGAATATAATACCAACACTAGGCCTGCGGGACTTA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGACTTA
* * *
59404837 TCCTGGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGACTT-A
* ** * *
59404876 CTCGGATATTTTACCAGTACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGAC-TT-A
*
59404915 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGACTT-A
*
59404954 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGACTT-A
* ** * *
59404992 CTCGGATATTTTACTAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGACTT-A
*
59405030 CCCTGATATA
1 CCCGGATATA
59405040 CATCGAATAT
Statistics
Matches: 171, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
38 134 0.78
39 9 0.05
40 28 0.16
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (37 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGACTTA
Found at i:59404932 original size:78 final size:76
Alignment explanation
Indices: 59404800--59405039 Score: 300
Period size: 76 Copynumber: 3.1 Consensus size: 76
59404790 GGCACTAAGG
* * * * * * *
59404800 CCCGAATATAATACCAACACTAGGCCTGCGGGACTTATCCTGGATATAATACCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
*
59404865 GTGGGATTTAA
66 GCGGGATTTAA
* ** * *
59404876 CTCGGATATTTTACCAGTACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGC
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGC
59404941 CTGCGGGATTTAA
64 CTGCGGGATTTAA
* ** *
59404954 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACTCGGATATTTTACTAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
59405019 GCGGGATTTAA
66 GCGGGATTTAA
*
59405030 CCCTGATATA
1 CCCGGATATA
59405040 CATCGAATAT
Statistics
Matches: 139, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
76 67 0.48
77 8 0.06
78 64 0.46
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (76 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
GCGGGATTTAA
Found at i:59404947 original size:116 final size:115
Alignment explanation
Indices: 59404799--59405039 Score: 358
Period size: 116 Copynumber: 2.1 Consensus size: 115
59404789 AGGCACTAAG
* * * * *
59404799 GCCCGAATATAATACCAACACTAGGCCTGCGGGACTTATCCTGGATATAATACCAGCACGAAGCC
1 GCCCGGATATAATACCAACACGAAGCCTGCGGGACTTAACCCGGATATAATACCAGCACGAAGCC
* * *
59404864 TGTGGGATTTAACTCGGATATTTTACCAGTACGAAGCCTGCGGGTCTTTAA
66 TGCGGGATTTAACTCGGATATTTTACCAGCACGAAGCCTGCGGG-ATTTAA
* *
59404915 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
1 GCCCGGATATAATACCAACACGAAGCCTGCGGGACTTAACCCGGATATAATACCAGCACGAAGCC
*
59404980 TGCGGGATTTAACTCGGATATTTTACTAGCACGAAGCCTGCGGGATTTAA
66 TGCGGGATTTAACTCGGATATTTTACCAGCACGAAGCCTGCGGGATTTAA
*
59405030 -CCCTGATATA
1 GCCCGGATATA
59405040 CATCGAATAT
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
114 9 0.08
115 5 0.04
116 99 0.88
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (115 bp):
GCCCGGATATAATACCAACACGAAGCCTGCGGGACTTAACCCGGATATAATACCAGCACGAAGCC
TGCGGGATTTAACTCGGATATTTTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:59409461 original size:53 final size:54
Alignment explanation
Indices: 59409381--59409587 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
59409371 TTCCTTTTTA
* * * *
59409381 AACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * ** *
59409434 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATTTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
59409488 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
59409543 AACTTACCAATGTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
59409588 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 44 0.37
54 37 0.31
55 39 0.32
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:59409536 original size:55 final size:53
Alignment explanation
Indices: 59409394--59409576 Score: 163
Period size: 55 Copynumber: 3.4 Consensus size: 53
59409384 TTACCATTGT
* * * *
59409394 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATGAACTCACCAATGC
* * ** * *
59409447 CATGCCTTGGCATGGTCTTACATGGGATTT--TTGCCTTATCGTAGTTTATCAATGC
1 CATGTCTTGACATGGTCTTACAT--GATTTCCTTGCCTTAT-G-AACTCACCAATGC
* * * *
59409502 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATGT
1 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAT-GAACTCACCAATGC
* *
59409556 CATGCCTTGGCATGGTCTTAC
1 CATGTCTTGACATGGTCTTAC
59409577 TTGGTATCCT
Statistics
Matches: 103, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
53 34 0.33
54 29 0.28
55 40 0.39
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATGAACTCACCAATGC
Found at i:59411418 original size:30 final size:30
Alignment explanation
Indices: 59411382--59411442 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
59411372 GTCACCATCC
*
59411382 TATGGCCTTGCTTTAGCTCTAAAAATTCTT
1 TATGGCCTTGCTTCAGCTCTAAAAATTCTT
59411412 TATGGCCTTGCTTCAGCTCTAAAAATTCTT
1 TATGGCCTTGCTTCAGCTCTAAAAATTCTT
59411442 T
1 T
59411443 CCTTTTCAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (30 bp):
TATGGCCTTGCTTCAGCTCTAAAAATTCTT
Found at i:59414489 original size:27 final size:26
Alignment explanation
Indices: 59414454--59414565 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
59414444 AGCATGGCTG
*
59414454 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
59414480 CCAGATACAGATAATCGTGACAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
* *
59414508 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
59414535 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
59414562 CCAG
1 CCAG
59414566 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.68
28 18 0.24
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:59414546 original size:54 final size:54
Alignment explanation
Indices: 59414454--59414565 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
59414444 AGCATGGCTG
* *
59414454 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGACAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGACAGAGCCA
* * * *
59414508 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGACAGAGCCA
59414562 CCAG
1 CCAG
59414566 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGACAGAGCCA
Found at i:59416712 original size:94 final size:92
Alignment explanation
Indices: 59416595--59416766 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 92
59416585 ATCTTATAGC
* * **
59416595 CGATGCATGTCCTAGACATGTCTTACACCGGCT-TACAT-CTCGAGGCTGATGCATGTCCCAAAG
1 CGATGCATGTCCCAGACATGTCTTACACCGGCTCT-CATAAT-GAGGCCAATGCATGTCCCAAAG
59416658 ATGTCTTACACTAGCTCTCGTTTCAATGA
64 ATGTCTTACACTAGCTCTCGTTTCAATGA
* * * *
59416687 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGTCCCAGAT
1 CGATG-CATGTCCCAGACAT-GTCTTACACCGGCTCTCATAATGAGGCCAATGCATGTCCCAAAG
59416752 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
59416767 GCACAAATGA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 48 0.71
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACCGGCTCTCATAATGAGGCCAATGCATGTCCCAAAGAT
GTCTTACACTAGCTCTCGTTTCAATGA
Found at i:59424039 original size:17 final size:17
Alignment explanation
Indices: 59424006--59424039 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
59423996 TTCTAGCATA
59424006 GTTTTGGTTTATCGTGT
1 GTTTTGGTTTATCGTGT
59424023 GTTTTCGGTTTAT-GTGT
1 GTTTT-GGTTTATCGTGT
59424040 CCACCATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.06, C:0.06, G:0.29, T:0.59
Consensus pattern (17 bp):
GTTTTGGTTTATCGTGT
Found at i:59431173 original size:18 final size:17
Alignment explanation
Indices: 59431119--59431175 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
59431109 CGACCGATTT
*
59431119 GGGTCGTGTGGGCCACAA
1 GGGT-GTGTGGGCCACAC
**
59431137 GGGCATGTGGGCCACAC
1 GGGTGTGTGGGCCACAC
59431154 GGGTGTGTGGGCCTACAC
1 GGGTGTGTGGGCC-ACAC
59431172 GGGT
1 GGGT
59431176 AAAGCACATG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
17 22 0.67
18 11 0.33
ACGTcount: A:0.14, C:0.23, G:0.46, T:0.18
Consensus pattern (17 bp):
GGGTGTGTGGGCCACAC
Found at i:59435860 original size:21 final size:21
Alignment explanation
Indices: 59435836--59435883 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
59435826 GGTCACACAA
*
59435836 CCATGTGGCTC-TCCCACATGC
1 CCATGTGGC-CATCCCACACGC
*
59435857 CCATGTGGCCATTCCACACGC
1 CCATGTGGCCATCCCACACGC
59435878 CCATGT
1 CCATGT
59435884 ACCCAACTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.17, C:0.42, G:0.19, T:0.23
Consensus pattern (21 bp):
CCATGTGGCCATCCCACACGC
Found at i:59440087 original size:24 final size:24
Alignment explanation
Indices: 59440060--59440107 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
59440050 AATTATAAGT
59440060 AAATACACCTCCCATCTAAATTTA
1 AAATACACCTCCCATCTAAATTTA
* *
59440084 AAATGCACCTCTCATCTAAATTTA
1 AAATACACCTCCCATCTAAATTTA
59440108 CTTTGAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.27, G:0.02, T:0.31
Consensus pattern (24 bp):
AAATACACCTCCCATCTAAATTTA
Found at i:59441220 original size:21 final size:21
Alignment explanation
Indices: 59441196--59441245 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
59441186 TTGTTAGAAA
59441196 ATAATTATTAAGTGATGAATG
1 ATAATTATTAAGTGATGAATG
*
59441217 ATAATTATTGAGTGATGAATG
1 ATAATTATTAAGTGATGAATG
59441238 ATAATTAT
1 ATAATTAT
59441246 ATCACTTGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (21 bp):
ATAATTATTAAGTGATGAATG
Found at i:59445595 original size:53 final size:53
Alignment explanation
Indices: 59445515--59445621 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
59445505 TAAGTCGAGA
* *
59445515 CACATGCATCGTCGGCACAATCCCATAAGATAATTGATCTCAACTAGAGTTAT
1 CACATGCATCATCAGCACAATCCCATAAGATAATTGATCTCAACTAGAGTTAT
*
59445568 CACATGCGTCATCAGCACAATCCCATAAGATAATTGATCTCAACTAGAGTTAT
1 CACATGCATCATCAGCACAATCCCATAAGATAATTGATCTCAACTAGAGTTAT
59445621 C
1 C
59445622 TCTATTGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (53 bp):
CACATGCATCATCAGCACAATCCCATAAGATAATTGATCTCAACTAGAGTTAT
Found at i:59446988 original size:36 final size:36
Alignment explanation
Indices: 59446947--59447018 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
59446937 TCCGTTAATA
59446947 TTTTCCAGAAACTAGACTCACATATATATTTATCAT
1 TTTTCCAGAAACTAGACTCACATATATATTTATCAT
*
59446983 TTTTCCAGAAACTAGACTCACATATATCTTTATCAT
1 TTTTCCAGAAACTAGACTCACATATATATTTATCAT
59447019 AATTTTCATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.39
Consensus pattern (36 bp):
TTTTCCAGAAACTAGACTCACATATATATTTATCAT
Found at i:59450015 original size:21 final size:21
Alignment explanation
Indices: 59449989--59450036 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
59449979 TTGTTGGAAA
*
59449989 ATAATTATTGACTGATGAATT
1 ATAATTATTGACTGATGAATG
*
59450010 ATAATTATTGAGTGATGAATG
1 ATAATTATTGACTGATGAATG
59450031 ATAATT
1 ATAATT
59450037 GTATCTCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.42
Consensus pattern (21 bp):
ATAATTATTGACTGATGAATG
Found at i:59452411 original size:45 final size:43
Alignment explanation
Indices: 59452339--59452459 Score: 143
Period size: 45 Copynumber: 2.7 Consensus size: 43
59452329 GTTTCAAAGG
* * * *
59452339 ATGCCATGGTATCTTCCAACCATGGTCTTATGTATTCCTGAAGTA
1 ATGCCATAGTATCTTTCAACTATGGTCTTATGT-TACC-GAAGTA
* * *
59452384 ATGTCATAGTATCTTTCAACTATGGTCTTGATTGTTACCGATGTG
1 ATGCCATAGTATCTTTCAACTATGGTCTT-A-TGTTACCGAAGTA
59452429 ATGCCATAGTATCTTTCAACTATGGTCTTAT
1 ATGCCATAGTATCTTTCAACTATGGTCTTAT
59452460 TTGTATAAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
43 1 0.02
44 1 0.02
45 57 0.86
46 4 0.06
47 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (43 bp):
ATGCCATAGTATCTTTCAACTATGGTCTTATGTTACCGAAGTA
Found at i:59452491 original size:45 final size:45
Alignment explanation
Indices: 59452381--59452496 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
59452371 TATTCCTGAA
*
59452381 GTAATGTCATAGTATCTTTCAACTATGGTCTTGATTGTTACCGAT
1 GTAATGTCATAGTATCTTTCAACTATGGTCTTGATTGTTACAGAT
* *
59452426 GTGATGCCATAGTATCTTTCAACTATGGTCTT-ATTTGTATA-AGAT
1 GTAATGTCATAGTATCTTTCAACTATGGTCTTGA-TTGT-TACAGAT
* * *
59452471 TTAATGTCATAATATATTTCAACTAT
1 GTAATGTCATAGTATCTTTCAACTAT
59452497 AGTGTTACAC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.02
45 58 0.95
46 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.43
Consensus pattern (45 bp):
GTAATGTCATAGTATCTTTCAACTATGGTCTTGATTGTTACAGAT
Found at i:59459432 original size:40 final size:40
Alignment explanation
Indices: 59459373--59459580 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
59459363 CAATTGAATG
* * * *
59459373 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * ** *
59459413 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
59459453 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
59459493 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
59459533 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
59459573 ATATCCGG
1 ATATCCGG
59459581 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:59459511 original size:80 final size:80
Alignment explanation
Indices: 59459374--59459580 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
59459364 AATTGAATGA
* * ** * * *
59459374 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
59459439 TTGTGCTAG-CG-AC
66 TTGTGCAAGTCGTAC
* * *
59459452 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
59459517 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
59459534 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
59459581 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:59463554 original size:24 final size:23
Alignment explanation
Indices: 59463522--59463630 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
59463512 ACCAAACGTT
* **
59463522 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
59463546 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
59463570 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
59463594 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
59463618 GCACACATAGTGC
1 GCACACATAGTGC
59463631 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:59463596 original size:48 final size:48
Alignment explanation
Indices: 59463522--59463630 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
59463512 ACCAAACGTT
* **
59463522 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
59463570 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
59463618 GCACACATAGTGC
1 GCACACATAGTGC
59463631 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:59474138 original size:39 final size:40
Alignment explanation
Indices: 59473994--59474136 Score: 136
Period size: 40 Copynumber: 3.6 Consensus size: 40
59473984 AATTGAATGA
* * * *
59473994 TATCCGGGCTAA-ATCCCGAAGACAATT-ATGCTGGAAATTA
1 TATCCGGGCTAAGA-CCCGAAGGCAATTCGTGC-GGACATTC
* * *
59474034 TATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTGG-C-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATT-CG-T-GCGGACATTC
59474075 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGGACATTC
59474113 TATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCA
59474137 TTTGTGCACG
Statistics
Matches: 84, Mismatches: 10, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
36 3 0.04
37 2 0.02
38 4 0.05
39 25 0.30
40 44 0.52
41 2 0.02
43 3 0.04
44 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.27, T:0.20
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGGACATTC
Found at i:59474158 original size:79 final size:80
Alignment explanation
Indices: 59473993--59474159 Score: 189
Period size: 79 Copynumber: 2.1 Consensus size: 80
59473983 AAATTGAATG
*
59473993 ATATCCGGGCTAAATCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAATCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
59474058 ATTGCGCTAGTGGCT
66 ATTGCGCTAGTGACT
* * * * *
59474073 ACATCCGGGCTAAGA-CCCGAAGGC-ATTCGTGC-GGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAA-ATCCCGAAGACAATT-ATGCTGGAAATTATATCCGGGCTAAGACCCGAAGG
* * *
59474135 CATTTGTGC-ACGTGATT
64 CAATTGCGCTA-GTGACT
59474152 ATATCCGG
1 ATATCCGG
59474160 TTATATTCCG
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 48 0.66
80 23 0.32
81 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAATCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGCGCTAGTGACT
Found at i:59480514 original size:12 final size:12
Alignment explanation
Indices: 59480497--59480522 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
59480487 GTTCGTGTCG
59480497 AAACCATTTTTA
1 AAACCATTTTTA
59480509 AAACCATTTTTA
1 AAACCATTTTTA
59480521 AA
1 AA
59480523 TTGAGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AAACCATTTTTA
Found at i:59481935 original size:22 final size:21
Alignment explanation
Indices: 59481900--59481993 Score: 65
Period size: 18 Copynumber: 4.7 Consensus size: 21
59481890 AAAAGGTATC
* *
59481900 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
59481921 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* * *
59481944 TGCATATCATA--TCTAATAT
1 TACAAATCATATCTCTAAGAT
*
59481963 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
59481981 TGC-AATCATATCT
1 TACAAATCATATCT
59481994 AAGATTGTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
18 23 0.37
19 10 0.16
20 1 0.02
21 3 0.05
22 15 0.24
23 10 0.16
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:59481943 original size:23 final size:22
Alignment explanation
Indices: 59481900--59481957 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
59481890 AAAAGGTATC
* *
59481900 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
59481921 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
59481944 TGCATATCATATCT
1 TACAAATCATATCT
59481958 AATATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:59481964 original size:19 final size:19
Alignment explanation
Indices: 59481936--59482044 Score: 181
Period size: 19 Copynumber: 5.9 Consensus size: 19
59481926 AATCATATCT
59481936 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
59481955 TCTAATATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
59481973 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
59481991 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
59482008 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59482027 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
59482045 TGAAGATTAT
Statistics
Matches: 85, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
17 16 0.19
18 33 0.39
19 36 0.42
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:59482052 original size:17 final size:19
Alignment explanation
Indices: 59481939--59482052 Score: 132
Period size: 18 Copynumber: 6.3 Consensus size: 19
59481929 CATATCTTCT
*
59481939 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
* *
59481958 AATATTGCA-ATCATATCT
1 AAGATTGCATATCATATCG
*
59481976 AAGATTGCA-ATCATATCT
1 AAGATTGCATATCATATCG
*
59481994 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCG
*
59482011 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
59482030 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
59482047 AAGATT
1 AAGATT
59482053 ATATTTCCAT
Statistics
Matches: 89, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
17 22 0.25
18 34 0.38
19 33 0.37
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:59482052 original size:36 final size:38
Alignment explanation
Indices: 59481929--59482044 Score: 181
Period size: 36 Copynumber: 3.2 Consensus size: 38
59481919 ATTACAAAAT
*
59481929 CATATC-T-TCTAAGATTGCATATCATATCTAATATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
59481965 CA-ATCATATCTAAGATTGCA-ATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
59482001 --TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
59482037 CATATCAT
1 CATATCAT
59482045 TGAAGATTAT
Statistics
Matches: 73, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
35 21 0.29
36 34 0.47
37 12 0.16
38 6 0.08
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.38
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:59482449 original size:43 final size:45
Alignment explanation
Indices: 59482399--59482528 Score: 165
Period size: 45 Copynumber: 2.9 Consensus size: 45
59482389 GCTATCTTTG
* *
59482399 ATCTGCTCCCCGTCTAATA-AGAGACGCCAAATCTGTT-TCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCA
* * * *
59482442 ATCTGCTCTCCGTCTAACACAGAGATGTCAAATCTGTTATCTCCG
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCA
* * *
59482487 ATTTCCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCT
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCT
59482529 TGGATCTGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 17 0.23
44 16 0.22
45 40 0.55
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCA
Found at i:59482684 original size:78 final size:78
Alignment explanation
Indices: 59482552--59482846 Score: 430
Period size: 78 Copynumber: 3.8 Consensus size: 78
59482542 ATGTAAACAC
* * **
59482552 ATGAAGGTCAGATCTGCTATGTTTTTTATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGATCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
59482617 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
59482630 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATATAGGGATGCCAAATCATCT
1 ATGAAGATCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
59482695 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
59482708 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCT
1 ATGAAGATCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
59482773 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * **
59482786 ATGAAGGTTAGA-CATGCTATGTCTGCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGATCAGATC-TGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
59482847 TGTTTCTTCG
Statistics
Matches: 197, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
77 1 0.01
78 196 0.99
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (78 bp):
ATGAAGATCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:59482897 original size:199 final size:199
Alignment explanation
Indices: 59482680--59483045 Score: 574
Period size: 199 Copynumber: 1.8 Consensus size: 199
59482670 CTAATATAGG
* *
59482680 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCC
1 GATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTCGATCTGCTCCC
* *
59482745 CGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGAAGGT-TAGA-CATGCTATGT
66 CGTCTAATACAAAGATACCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATC-TGCTATGT
* **
59482808 CTGCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAG
129 CTGCGATCTGCTCCCCGTCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAG
59482873 TACAGA
194 TACAGA
*
59482879 GATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTTGATCTGCTCCC
1 GATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTCGATCTGCTCCC
* * *
59482944 CGTCTAATACAAAGATGCCAAATCATCTTGGATTTGCTTCAATGAAGGTCCAATCTGTTATGTCT
66 CGTCTAATACAAAGATACCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCT
** *
59483009 TTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
131 GCGATCTGCTCCCCGTCGAATACAGAGATGCCAAATC
59483046 ATCTTGGATC
Statistics
Matches: 151, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
199 149 0.99
200 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (199 bp):
GATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTCGATCTGCTCCC
CGTCTAATACAAAGATACCAAATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCT
GCGATCTGCTCCCCGTCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTA
CAGA
Found at i:59482947 original size:277 final size:277
Alignment explanation
Indices: 59482596--59483123 Score: 819
Period size: 277 Copynumber: 1.9 Consensus size: 277
59482586 CCCCGTCTAA
* *
59482596 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTCGATCT
* **
59482661 GCTCCCCGTCTAATATAGGGATGCCAAATCATCTTGGATCTGCTTCAATGAAGAT-CAGATCTGC
66 GCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCCA-ATCTGC
*
59482725 TGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGA
130 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGA
* ** *
59482790 AGGTT-AGA-CATGCTATGTCTGCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
195 A-GTTCAGATC-TGCTATGTCTGCGATCTGCTCCCCGTCGAATACAGAGATACCAAATCTGTTTC
59482853 TTCGATTTGTTCTCTGACAG
258 TTCGATTTGTTCTCTGACAG
*
59482873 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTTGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTCGATCT
* * *
59482938 GCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATTTGCTTCAATGAAGGTCCAATCTGTT
66 GCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCCAATCTGCT
* * *
59483003 ATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAATGAA
131 ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGAA
* ** *
59483068 GTTCAGATCTGCTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATACCAAATC
196 GTTCAGATCTGCTATGTCTGCGATCTGCTCCCCGTCGAATACAGAGATACCAAATC
59483124 ATCTTGGATC
Statistics
Matches: 227, Mismatches: 21, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
276 3 0.01
277 221 0.97
278 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (277 bp):
TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTCGATCT
GCTCCCCGTCTAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCCAATCTGCT
ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGAA
GTTCAGATCTGCTATGTCTGCGATCTGCTCCCCGTCGAATACAGAGATACCAAATCTGTTTCTTC
GATTTGTTCTCTGACAG
Found at i:59482975 original size:78 final size:78
Alignment explanation
Indices: 59482873--59483601 Score: 1050
Period size: 78 Copynumber: 9.3 Consensus size: 78
59482863 TCTCTGACAG
* * *
59482873 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAAATCTGCTGTGTCTTTGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
59482938 GCTCCCCGTCTAA
66 GCTCCCCGTCTAA
* * * * * *
59482951 TACAAAGATGCCAAATCATCTTGGATTTGCTTCAATGAAGGTCCA-ATCTGTTATGTCTTTGATC
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGAT-CAGATCTGCTGTGTCTTCGATC
59483015 TGCTCCCCGTCTAA
65 TGCTCCCCGTCTAA
* * *
59483029 TACAGAGATGCCAAATCATCTTGGATCTGCTTTAATGAAGTTCAGATCTGCTGTGTCTTTGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
59483094 GCTCCCCGTCTAA
66 GCTCCCCGTCTAA
* * *
59483107 TACAGAGATACCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTTTTCGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
** *
59483172 ATTCCCCATCTAA
66 GCTCCCCGTCTAA
* *
59483185 TATAGAGATGCCAAATCATCTTGGATCTACTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
*
59483250 GCTCCCTGTCTAA
66 GCTCCCCGTCTAA
* *
59483263 TACAAAGATGTCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
*
59483328 GTTCCCCGTCTAA
66 GCTCCCCGTCTAA
* * ** *
59483341 TACAGGGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATTAGATCTATTGTGTCTTCAATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
*
59483406 GCTCCCCATCTAA
66 GCTCCCCGTCTAA
* *
59483419 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAA-AGTCCA-ATCTGTTATGTCTTCGAT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGA-T-CAGATCTGCTGTGTCTTCGAT
59483482 CTGCTCCCCGTCTAA
64 CTGCTCCCCGTCTAA
* * * *
59483497 TACAGGGATTCCAAATCATCTTGGATCTACTTCAATAAAGATCAGATCTGCTGTGTCTTCGATCT
1 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
* *
59483562 ACTCCCCATCTAA
66 GCTCCCCGTCTAA
* *
59483575 TACAGAGATGTCAAATCATCTTAGATC
1 TACAGAGATGCCAAATCATCTTGGATC
59483602 CTACTGCTTA
Statistics
Matches: 583, Mismatches: 62, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
77 5 0.01
78 574 0.98
79 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (78 bp):
TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGATCAGATCTGCTGTGTCTTCGATCT
GCTCCCCGTCTAA
Found at i:59483973 original size:84 final size:84
Alignment explanation
Indices: 59483601--59484040 Score: 637
Period size: 84 Copynumber: 5.3 Consensus size: 84
59483591 CATCTTAGAT
* * **
59483601 CCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCTGCTACTGCTTA-GG-GATAAG
1 CCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
* *
59483664 ATCTGAAAATTTAACTTGTTAC
63 ATCTGCAAATTTAACCTGTTAC
* *
59483686 CCTAATGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTTAGGG-GATAAGATC
1 CCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
59483750 TGCAAATTTAACCTGTTAC
66 TGCAAATTTAACCTGTTAC
*
59483769 CCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACTGCTTAGGGAGATAAG
1 CCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATAAG
*
59483834 ATCTGC-----GAACCTGTTA-
63 ATCTGCAAATTTAACCTGTTAC
*
59483850 CCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
1 CCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
59483915 TGCAAATTTAACCTGTTAC
66 TGCAAATTTAACCTGTTAC
*
59483934 CCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATC
1 CCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
**
59483999 TATAAATTTAACCTGTTAC
66 TGCAAATTTAACCTGTTAC
59484018 CCTACTGCTTAGGGGATTAAGGC
1 CCTACTGCTTAGGGGATTAAGGC
59484041 ACTGAATTTT
Statistics
Matches: 325, Mismatches: 19, Indels: 23
0.89 0.05 0.06
Matches are distributed among these distances:
78 38 0.12
80 1 0.00
81 27 0.08
82 34 0.10
83 63 0.19
84 104 0.32
85 21 0.06
86 25 0.08
87 12 0.04
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (84 bp):
CCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
TGCAAATTTAACCTGTTAC
Found at i:59484993 original size:1 final size:1
Alignment explanation
Indices: 59484987--59485046 Score: 66
Period size: 1 Copynumber: 60.0 Consensus size: 1
59484977 GGCCTCTCCA
* * * * * *
59484987 TTTTTTTTCTCTTTTTTTTTTTTTTTTTTCTCTTTTTTTTTCTTTTTTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
59485047 AAATAGAAGT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (1 bp):
T
Found at i:59485011 original size:21 final size:21
Alignment explanation
Indices: 59484987--59485046 Score: 90
Period size: 19 Copynumber: 3.0 Consensus size: 21
59484977 GGCCTCTCCA
59484987 TTTTTTTTCTCTTTTTTTTTT
1 TTTTTTTTCTCTTTTTTTTTT
59485008 TTTTTTTTCTC--TTTTTTTT
1 TTTTTTTTCTCTTTTTTTTTT
*
59485027 TCTTTTTTCT-TTTTTTTTTT
1 TTTTTTTTCTCTTTTTTTTTT
59485047 AAATAGAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 17 0.47
20 8 0.22
21 11 0.31
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (21 bp):
TTTTTTTTCTCTTTTTTTTTT
Found at i:59489248 original size:12 final size:12
Alignment explanation
Indices: 59489231--59489256 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
59489221 CAAGCTGTCG
59489231 AAACCATTTTTA
1 AAACCATTTTTA
59489243 AAACCATTTTTA
1 AAACCATTTTTA
59489255 AA
1 AA
59489257 TCGAGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AAACCATTTTTA
Found at i:59490664 original size:22 final size:21
Alignment explanation
Indices: 59490629--59490685 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
59490619 AAAAGGTATC
* *
59490629 TACAAATAAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
59490650 TACAAAATCATATCTTTAAGAT
1 TAC-AAATCATATCTCTAAGAT
* *
59490672 TGCATATCATATCT
1 TACAAATCATATCT
59490686 ATGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:59490693 original size:19 final size:19
Alignment explanation
Indices: 59490642--59490751 Score: 145
Period size: 19 Copynumber: 5.8 Consensus size: 19
59490632 AAATAAAATC
* *
59490642 TCTAAGATTACAAAATCATA
1 TCTAAGATTGC-ATATCATA
59490662 TCTTTAAGATTGCATATCATA
1 TC--TAAGATTGCATATCATA
*
59490683 TCTATGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
59490701 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
59490718 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
59490737 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
59490752 TATTGAACAT
Statistics
Matches: 81, Mismatches: 4, Indels: 11
0.84 0.04 0.11
Matches are distributed among these distances:
17 16 0.20
18 15 0.19
19 31 0.38
20 2 0.02
21 9 0.11
22 8 0.10
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:59490720 original size:35 final size:36
Alignment explanation
Indices: 59490655--59490751 Score: 133
Period size: 35 Copynumber: 2.6 Consensus size: 36
59490645 AAGATTACAA
*
59490655 AATCATATCTTTAAGATTGCATATCATATCTATGATTGC
1 AATCATATC--TAAGATTG-ATATCATATCTAAGATTGC
59490694 AATCATATCTAAGATTG-TATCATATCTAAGATTGC
1 AATCATATCTAAGATTGATATCATATCTAAGATTGC
59490729 ATATCATATCTAAGATTGCATAT
1 A-ATCATATCTAAGATTG-ATAT
59490752 TATTGAACAT
Statistics
Matches: 54, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
35 18 0.33
36 16 0.30
37 8 0.15
38 3 0.06
39 9 0.17
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (36 bp):
AATCATATCTAAGATTGATATCATATCTAAGATTGC
Found at i:59490751 original size:14 final size:15
Alignment explanation
Indices: 59490696--59490733 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
59490686 ATGATTGCAA
59490696 TCATATCTAAGATTG
1 TCATATCTAAGATTG
59490711 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
59490728 -CATATC
1 TCATATC
59490734 ATATCTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:59493699 original size:48 final size:49
Alignment explanation
Indices: 59493536--59494038 Score: 829
Period size: 49 Copynumber: 10.4 Consensus size: 49
59493526 TACATATATG
* * * *
59493536 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
59493585 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-ATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
59493632 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTAAAAGTG-ATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
59493680 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTAAGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
59493729 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTAAGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
59493778 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTAAGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
59493827 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAACTGTATGTACA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
59493876 TGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTA-GTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59493924 TGTGATAAGGCCTAATGGCCGATGTGGTG-ATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59493972 TGTGATAAGGCCTAATGGCCGATGTGGTG-ATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59494020 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
59494039 TAATGTAAAA
Statistics
Matches: 434, Mismatches: 17, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
47 55 0.13
48 153 0.35
49 226 0.52
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:59494190 original size:37 final size:37
Alignment explanation
Indices: 59494140--59494222 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
59494130 GGAATATGTT
* *
59494140 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTATGGAGATTATGA
*
59494177 CCGGGTAAGACCCGATGACTACGTATGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTATGGAGATTATGA
59494214 CCGGGTAAG
1 CCGGGTAAG
59494223 GCTTCTTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTATGGAGATTATGA
Found at i:59496402 original size:29 final size:29
Alignment explanation
Indices: 59496314--59496422 Score: 173
Period size: 29 Copynumber: 3.8 Consensus size: 29
59496304 TGTGCGAATG
59496314 ATTGAGGCACTATGTGTGCGAGATCAGTA
1 ATTGAGGCACTATGTGTGCGAGATCAGTA
**
59496343 AACGAGGCACTATGTGTGCGAGATCAGTA
1 ATTGAGGCACTATGTGTGCGAGATCAGTA
59496372 ATTGAGGCACTATGTGTGCGAGATCAGTA
1 ATTGAGGCACTATGTGTGCGAGATCAGTA
** *
59496401 ATTGAGAAACTGTGTGTGCGAG
1 ATTGAGGCACTATGTGTGCGAG
59496423 TTTTTCAACA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (29 bp):
ATTGAGGCACTATGTGTGCGAGATCAGTA
Found at i:59497003 original size:40 final size:41
Alignment explanation
Indices: 59496905--59497003 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
59496895 TTCGAATGGT
* ** * *
59496905 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
59496946 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-A
59496987 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
59497004 GAACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
Found at i:59499850 original size:49 final size:49
Alignment explanation
Indices: 59499794--59500154 Score: 652
Period size: 49 Copynumber: 7.4 Consensus size: 49
59499784 TACATATATG
* * * *
59499794 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
59499843 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
59499892 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59499941 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59499990 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59500039 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59500088 TGTGATAAGGCCTAATGGCCGATGTGGTG-ATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59500136 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
59500155 TAATGTAAAA
Statistics
Matches: 304, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
48 38 0.12
49 266 0.88
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:59500306 original size:37 final size:37
Alignment explanation
Indices: 59500256--59500340 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
59500246 GGAATATGTT
*
59500256 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
59500293 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
59500330 CCGGGTAAGAC
1 CCGGGTAAGAC
59500341 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:59502502 original size:29 final size:29
Alignment explanation
Indices: 59502429--59502535 Score: 173
Period size: 28 Copynumber: 3.8 Consensus size: 29
59502419 TGTGCGAATG
59502429 ATTGAGGCACTATGTGTGCGAGATCAGTA
1 ATTGAGGCACTATGTGTGCGAGATCAGTA
*
59502458 A-CGAGGCACTATGTGTGCGAGATCAGTA
1 ATTGAGGCACTATGTGTGCGAGATCAGTA
59502486 ATTGAGGCACTATGTGTGCGAGATCAGTA
1 ATTGAGGCACTATGTGTGCGAGATCAGTA
* *
59502515 ATTGA-GAACTGTGTGTGCGAG
1 ATTGAGGCACTATGTGTGCGAG
59502536 TTTTTCAACA
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
28 41 0.56
29 32 0.44
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.26
Consensus pattern (29 bp):
ATTGAGGCACTATGTGTGCGAGATCAGTA
Found at i:59503115 original size:40 final size:41
Alignment explanation
Indices: 59503017--59503115 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
59503007 TTCGAATGGT
* ** * *
59503017 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
59503058 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-A
59503099 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
59503116 GAACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
Found at i:59505962 original size:49 final size:49
Alignment explanation
Indices: 59505906--59506314 Score: 714
Period size: 49 Copynumber: 8.4 Consensus size: 49
59505896 TACATATATG
* * * *
59505906 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
59505955 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
59506003 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59506052 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
59506101 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTAAGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
59506150 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTAAGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59506199 TGTGATAAGGCCTAATGGCCGATGTGGTG-ATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
59506247 TGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59506296 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
59506315 TAATGTAAAA
Statistics
Matches: 348, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 92 0.26
49 256 0.74
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:59506083 original size:146 final size:147
Alignment explanation
Indices: 59505906--59506314 Score: 714
Period size: 146 Copynumber: 2.8 Consensus size: 147
59505896 TACATATATG
* * * *
59505906 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* * *
59505971 GGCCGATGTGATGAATGTGAAAG-GGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
*
59506035 GTGAAAGTGTATGTATA
131 GTGAAAGTGTAAGTATA
59506052 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
59506117 GGCCGATGTGGTGAATGTGAAAGTGTAAGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
59506182 GTGAAAGTGTAAGTATA
131 GTGAAAGTGTAAGTATA
59506199 TGTGATAAGGCCTAATGGCCGATGTGGTG-ATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
59506263 GGCCGATGTGGTGGATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
59506315 TAATGTAAAA
Statistics
Matches: 251, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
146 168 0.67
147 83 0.33
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (147 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
GTGAAAGTGTAAGTATA
Found at i:59506238 original size:195 final size:195
Alignment explanation
Indices: 59505906--59506319 Score: 713
Period size: 195 Copynumber: 2.1 Consensus size: 195
59505896 TACATATATG
* *
59505906 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTAAGTATATGTGATAAGGCCTAAT
* *
59505971 GGCCGATGTGATGAATGTGAAAGGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATG
66 GGCCGATGTGATGAATGTGAAAGGGAAGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATG
59506036 TGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
131 TGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* * *
59506101 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTAAGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTAAGTATATGTGATAAGGCCTAAT
* *
59506166 GGCCGATGTGGTGAATGTGAAAGTGTAAGTATATGTGATAAGGCCTAATGGCCGATGTGGTG-AT
66 GGCCGATGTGATGAATGTGAAAG-GGAAGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
*
59506230 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTATGTAT
130 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
59506295 A
195 A
*
59506296 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATAAGGCCTAATGGCCAATG
59506320 TAAAATATAT
Statistics
Matches: 206, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
195 171 0.83
196 35 0.17
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (195 bp):
TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTAAGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGGGAAGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATG
TGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:59506362 original size:97 final size:98
Alignment explanation
Indices: 59505906--59506314 Score: 587
Period size: 97 Copynumber: 4.2 Consensus size: 98
59505896 TACATATATG
* * * * *
59505906 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGA-AAGTGTATGTATATGTGATAAGGCCTAA
1 TGTGATAAGGCCTAATGGCCGATGTG-TGAATATGATGAGTGTATGTATATGTGATAAGGCCTAA
* *
59505970 TGGCCGATGTGATGAATGTGAAAG-GGATGTATA
65 TGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* * *
59506003 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGA-AAGTGTATGTATATGTGATAAGGCCTAA
1 TGTGATAAGGCCTAATGGCCGATGT-GTGAATATGATGAGTGTATGTATATGTGATAAGGCCTAA
59506067 TGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
65 TGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* * *
59506101 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGA-AAGTGTAAGTATATGTGATAAGGCCTAA
1 TGTGATAAGGCCTAATGGCCGATGT-GTGAATATGATGAGTGTATGTATATGTGATAAGGCCTAA
*
59506165 TGGCCGATGTGGTGAATGTGAAAGTGTAAGTATA
65 TGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
59506199 TGTGATAAGGCCTAATGGCCGATGTGGTG-ATGTGA-AAGTGTATGTATATGTGATAAGGCCTAA
1 TGTGATAAGGCCTAATGGCCGATGT-GTGAATATGATGAGTGTATGTATATGTGATAAGGCCTAA
*
59506262 TGGCCGATGTGGTGGATGTGAAAGTGTATGTATA
65 TGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
59506296 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
59506315 TAATGTAAAA
Statistics
Matches: 298, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
97 165 0.55
98 133 0.45
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (98 bp):
TGTGATAAGGCCTAATGGCCGATGTGTGAATATGATGAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:59506369 original size:97 final size:95
Alignment explanation
Indices: 59505947--59506362 Score: 475
Period size: 97 Copynumber: 4.3 Consensus size: 95
59505937 TGTGAAAGTG
* * *
59505947 TATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GGATGTATATGTGATGA
1 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAA
**
59506011 GGCCTAATGGCCGATGTGGTGA-ATGTGAAAGTG-
66 GGCCTAATGGCCGATGTAAT-ATATGT----GTGA
59506044 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAA
1 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAA
**
59506109 GGCCTAATGGCCGATGTGGTGA-ATGTGAAAGTG-
66 GGCCTAATGGCCGATGTAAT-ATATGT----GTGA
* *
59506142 TAAGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTAAGTATATGTGATAA
1 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAA
** * *
59506207 GGCCTAATGGCCGATGTGGTGATGTGAAAGTG-
66 GGCCTAATGGCCGATGTAAT-ATATG--TGTGA
*
59506239 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGGATGTGAAAGTGTATGTATATGTGATAA
1 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAA
**
59506304 GGCCTAATGGCTAATGTAAAATATATGTGTGA
66 GGCCTAATGGCCGATGT--AATATATGTGTGA
* * * *
59506336 TATGCATATGTGGTAAAGCCGAATGGC
1 TATGTATATGTGATAAGGCCTAATGGC
59506363 TAATGTGAAT
Statistics
Matches: 292, Mismatches: 20, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
96 3 0.01
97 149 0.51
98 137 0.47
99 3 0.01
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (95 bp):
TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAA
GGCCTAATGGCCGATGTAATATATGTGTGA
Done.