Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 208 of 345
Found at i:59826502 original size:27 final size:27
Alignment explanation
Indices: 59826468--59826901 Score: 127
Period size: 27 Copynumber: 16.0 Consensus size: 27
59826458 ATCTACAAAC
59826468 CAAGGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
59826495 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* *
59826524 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** *
59826551 CAAGGGTAAAAT-AGTAATTCTGTAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
** * *
59826578 CAAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
* * ** *
59826605 CGACGGTAAAATGA-TAATTTTGTAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
* ** * *
59826632 CGAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
*** *
59826659 CAAGGGTAAAAC-GATAATTTTATAAAT
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
* *** *
59826686 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** *
59826713 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** * *
59826740 CGAGGGTAAAACGGTAATTATGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** *** *
59826767 CGGGGGTAAAAC-GATAATTCTGTAAAT
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
** * ** *
59826794 CGGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCAGTAATTTTGTAAAT
**
59826821 CGAA-GGTATTTCAGTAATTTTACAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
* * *
59826848 CGAGAGTATTTCAGT-ATTTT-TACAAA
1 CAAGGGTATTTCAGTAATTTTGTA-AAT
*
59826874 CTAAGGGTATTTCAATAATTTTAGTAAA
1 C-AAGGGTATTTCAGTAATTTT-GTAAA
59826902 CTAAAGTATT
Statistics
Matches: 338, Mismatches: 46, Indels: 44
0.79 0.11 0.10
Matches are distributed among these distances:
25 1 0.00
26 19 0.06
27 278 0.82
28 17 0.05
29 20 0.06
30 3 0.01
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:59826812 original size:54 final size:54
Alignment explanation
Indices: 59826546--59826801 Score: 334
Period size: 54 Copynumber: 4.7 Consensus size: 54
59826536 TGTAACTTTG
* * * * *
59826546 TAAATCAAGGGTAAAA-TAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACGA-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTA
* * *
59826600 TAAATCGACGGTAAAATGATAATTTTGTAAATCGAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTA
* * *
59826654 TAAATCAAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTA
* * * *
59826708 TAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATG
1 TAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTA
* * *
59826762 TAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 TAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
59826802 CTTTGGTAAT
Statistics
Matches: 181, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
54 180 0.99
55 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTA
Found at i:59826814 original size:81 final size:81
Alignment explanation
Indices: 59826544--59826801 Score: 338
Period size: 81 Copynumber: 3.2 Consensus size: 81
59826534 TCTGTAACTT
* * ** * *
59826544 TGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAC
1 TGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATAAATCGAG
* *
59826609 GGTAAAATGATAATTT
66 GGTAAAACGATAATTC
* * * *
59826625 TGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACGATAATTTTATAAATCGAG
1 TGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATAAATCGAG
59826690 GGTAAAAC-AGTAATTC
66 GGTAAAACGA-TAATTC
* * * * *
59826706 TGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGG
1 TGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATAAATCGAG
59826771 GGTAAAACGATAATTC
66 GGTAAAACGATAATTC
*
59826787 TGTAAATCGGGGGTA
1 TGTAAATCGAGGGTA
59826802 CTTTGGTAAT
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 154 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
TGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATAAATCGAG
GGTAAAACGATAATTC
Found at i:59826848 original size:81 final size:81
Alignment explanation
Indices: 59826544--59826851 Score: 248
Period size: 81 Copynumber: 3.8 Consensus size: 81
59826534 TCTGTAACTT
* ** * ** * *
59826544 TGTAAATCAAGGGTAAAATAGTAATTCTGTAAATC-AAGGGTAAAATAGTAATTCTATAAATCGA
1 TGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAA-GGTAAAACAGTAATTTTATAAATCGA
* * *
59826608 CGGTAAAA-TGATAATTT
65 GGGTAAAACAG-TAATTC
** * *
59826625 TGTAAATCGAGGGTAAAATAGTAATTCTATAAATC-AAGGGTAAAAC-GATAATTTTATAAATCG
1 TGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAA-GGTAAAACAG-TAATTTTATAAATCG
59826688 AGGGTAAAACAGTAATTC
64 AGGGTAAAACAGTAATTC
** * * * * *
59826706 TGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGG
1 TGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAAGGTAAAACAGTAATTTTATAAATCGAG
59826771 GGTAAAAC-GATAATTC
66 GGTAAAACAG-TAATTC
* **** * *** *
59826787 TGTAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAG
1 TGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAAGGTAAAACAGTAATTTTATAAATCGAG
59826852 AGTATTTCAG
Statistics
Matches: 190, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
80 2 0.01
81 185 0.97
82 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (81 bp):
TGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAAGGTAAAACAGTAATTTTATAAATCGAG
GGTAAAACAGTAATTC
Found at i:59855667 original size:16 final size:15
Alignment explanation
Indices: 59855646--59855679 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
59855636 ATTAAAATAT
59855646 ATTTTTTTAATTTTTA
1 ATTTTTTTAA-TTTTA
59855662 ATTTTTTTAATTTTA
1 ATTTTTTTAATTTTA
59855677 ATT
1 ATT
59855680 AATTAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
ATTTTTTTAATTTTA
Found at i:59856043 original size:16 final size:17
Alignment explanation
Indices: 59856005--59856043 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
59855995 AATTTGTTAT
*
59856005 AAAATAAAGAGATGAAG
1 AAAATAAAGAGATAAAG
*
59856022 AGAATAAAGA-ATAAAG
1 AAAATAAAGAGATAAAG
59856038 AAAATA
1 AAAATA
59856044 TGAAAGCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (17 bp):
AAAATAAAGAGATAAAG
Found at i:59859469 original size:5 final size:5
Alignment explanation
Indices: 59859459--59859491 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
59859449 CCCACTTGTG
59859459 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
59859492 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:59877100 original size:53 final size:54
Alignment explanation
Indices: 59877032--59877210 Score: 218
Period size: 55 Copynumber: 3.3 Consensus size: 54
59877022 TTTCCTTTTT
* * * * *
59877032 GAACTTACCATTGCCATGTCTTAACATGATCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
59877085 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* *
59877139 GTAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* *
59877194 GAACTTATCAATGCCAT
1 GAACTCACCAATGCCAT
59877211 CTTTATCTTA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 42 0.39
54 15 0.14
55 46 0.43
56 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:59877155 original size:55 final size:53
Alignment explanation
Indices: 59877031--59877177 Score: 179
Period size: 53 Copynumber: 2.7 Consensus size: 53
59877021 TTTTCCTTTT
* * * * * * *
59877031 TGAACTTACCATTGCCATGTCTTAACATGATCTTACGTGGTATCC-TTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTA
*
59877084 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTA
*
59877137 TAGTAACTCACCAATGCCATGTCTTGACATGGTCTTACATG
1 T-G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATG
59877178 ATTTCCTTGC
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.02
53 43 0.53
54 1 0.01
55 35 0.43
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTA
Found at i:59880328 original size:20 final size:20
Alignment explanation
Indices: 59880303--59880344 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
59880293 AGAACATAGC
59880303 ATTCGGTCTTTAACTCACTG
1 ATTCGGTCTTTAACTCACTG
59880323 ATTCGGTCTTTAACTCACTG
1 ATTCGGTCTTTAACTCACTG
59880343 AT
1 AT
59880345 ATATATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (20 bp):
ATTCGGTCTTTAACTCACTG
Found at i:59883282 original size:28 final size:28
Alignment explanation
Indices: 59883242--59883298 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
59883232 GTGAAAGAAG
* *
59883242 TAAGCTTATAAAGCTTAGTAACTTCACA
1 TAAGCTTACAAAGATTAGTAACTTCACA
59883270 TAAGCTTACAAAGATTAGTAACTTCACA
1 TAAGCTTACAAAGATTAGTAACTTCACA
59883298 T
1 T
59883299 GTAAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.32
Consensus pattern (28 bp):
TAAGCTTACAAAGATTAGTAACTTCACA
Found at i:59883765 original size:53 final size:54
Alignment explanation
Indices: 59883707--59883873 Score: 180
Period size: 53 Copynumber: 3.1 Consensus size: 54
59883697 AACTTACTAT
* * *
59883707 TGCCATATCTTGACATGGTCTTACGTGGTATCCTTGCCTTA-AGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
59883760 TGCCATGCCTT-AGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTGACTCATCAA
1 TGCCATGTCTTGA-CATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* * * * *
59883815 TGTCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA-AACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
59883868 TGCCAT
1 TGCCAT
59883874 CCTTATCTTA
Statistics
Matches: 93, Mismatches: 15, Indels: 12
0.77 0.12 0.10
Matches are distributed among these distances:
52 3 0.03
53 45 0.48
54 2 0.02
55 41 0.44
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
Found at i:59883941 original size:47 final size:47
Alignment explanation
Indices: 59883872--59883977 Score: 176
Period size: 47 Copynumber: 2.3 Consensus size: 47
59883862 TATCAATGCC
* * *
59883872 ATCCTTATCTTACCAAATGCCATGTTCCAAACATTGTCTTACATGGT
1 ATCCTTGTCTTACCAAATGCCATGTTCCAAACATGGTCTGACATGGT
59883919 ATCCTTGTCTTACCAAATGCCATGTTCCAAACATGGTCTGACATGGT
1 ATCCTTGTCTTACCAAATGCCATGTTCCAAACATGGTCTGACATGGT
*
59883966 ATCTTTGTCTTA
1 ATCCTTGTCTTA
59883978 GTGCCAATGC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (47 bp):
ATCCTTGTCTTACCAAATGCCATGTTCCAAACATGGTCTGACATGGT
Found at i:59884043 original size:47 final size:47
Alignment explanation
Indices: 59883979--59884069 Score: 146
Period size: 47 Copynumber: 1.9 Consensus size: 47
59883969 TTTGTCTTAG
**
59883979 TGCCAATGCCACATCTTGATGTGGTCTTACATGGTATCCTTAACCAA
1 TGCCAATGCCACATCTTGACATGGTCTTACATGGTATCCTTAACCAA
**
59884026 TGCCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTAAC
1 TGCCAATGCCACATCTTGACATGGTCTTACATGGTATCCTTAAC
59884070 TGTCAATTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (47 bp):
TGCCAATGCCACATCTTGACATGGTCTTACATGGTATCCTTAACCAA
Found at i:59889536 original size:19 final size:19
Alignment explanation
Indices: 59889512--59889552 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
59889502 AGAAGAATGA
59889512 AAAATAATAATCAGATATG
1 AAAATAATAATCAGATATG
59889531 AAAATAATAATCAGATATG
1 AAAATAATAATCAGATATG
59889550 AAA
1 AAA
59889553 CATTAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.61, C:0.05, G:0.10, T:0.24
Consensus pattern (19 bp):
AAAATAATAATCAGATATG
Found at i:59897505 original size:9 final size:9
Alignment explanation
Indices: 59897491--59897563 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
59897481 GACACCTGCA
59897491 ATTAAACAC
1 ATTAAACAC
59897500 ATTAAA-AC
1 ATTAAACAC
*
59897508 ---AAACAT
1 ATTAAACAC
59897514 ATTAAACAC
1 ATTAAACAC
59897523 ATTTAAACAC
1 A-TTAAACAC
59897533 TTATTAAACAC
1 --ATTAAACAC
59897544 A--AAACAC
1 ATTAAACAC
59897551 ATTAAACAC
1 ATTAAACAC
59897560 -TTAA
1 ATTAA
59897564 CTTAAATAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 19
0.72 0.03 0.26
Matches are distributed among these distances:
5 3 0.06
6 1 0.02
7 7 0.13
8 6 0.11
9 19 0.36
10 8 0.15
11 8 0.15
12 1 0.02
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (9 bp):
ATTAAACAC
Found at i:59897539 original size:11 final size:11
Alignment explanation
Indices: 59897491--59897544 Score: 58
Period size: 10 Copynumber: 4.9 Consensus size: 11
59897481 GACACCTGCA
59897491 ATTAAACACAT
1 ATTAAACACAT
*
59897502 -TAAAACAAACAT
1 ATTAAAC--ACAT
59897514 ATTAAACACAT
1 ATTAAACACAT
*
59897525 -TTAAACACTT
1 ATTAAACACAT
59897535 ATTAAACACA
1 ATTAAACACA
59897545 AAACACATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
10 14 0.40
11 12 0.34
12 4 0.11
13 5 0.14
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (11 bp):
ATTAAACACAT
Found at i:59897539 original size:21 final size:22
Alignment explanation
Indices: 59897491--59897544 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
59897481 GACACCTGCA
59897491 ATTAAACACATTAAAACAAACAT
1 ATTAAACACATTAAAAC-AACAT
* *
59897514 ATTAAACACATTTAAAC-ACTT
1 ATTAAACACATTAAAACAACAT
59897535 ATTAAACACA
1 ATTAAACACA
59897545 AAACACATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 13 0.45
23 16 0.55
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (22 bp):
ATTAAACACATTAAAACAACAT
Found at i:59899730 original size:20 final size:21
Alignment explanation
Indices: 59899701--59899747 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
59899691 TTTTTATTTC
* *
59899701 CTTTTCTTTTTCT-TCCATGT
1 CTTTTTTTTTTCTCTCAATGT
*
59899721 CTTTTTTTTTTCTCTCAATTT
1 CTTTTTTTTTTCTCTCAATGT
59899742 CTTTTT
1 CTTTTT
59899748 CTTAGTTCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.06, C:0.21, G:0.02, T:0.70
Consensus pattern (21 bp):
CTTTTTTTTTTCTCTCAATGT
Found at i:59899744 original size:21 final size:20
Alignment explanation
Indices: 59899696--59899747 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
59899686 TTCTCTTTTT
* *
59899696 ATTTCCTTTTCTTTTTCTTCC
1 ATTT-CTTTTTTTTTTCTTCA
*
59899717 ATGTCTTTTTTTTTTCTCTCA
1 ATTTCTTTTTTTTTTCT-TCA
59899738 ATTTCTTTTT
1 ATTTCTTTTT
59899748 CTTAGTTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.08, C:0.21, G:0.02, T:0.69
Consensus pattern (20 bp):
ATTTCTTTTTTTTTTCTTCA
Found at i:59901913 original size:11 final size:11
Alignment explanation
Indices: 59901866--59901918 Score: 56
Period size: 10 Copynumber: 4.8 Consensus size: 11
59901856 ACACCTGTAG
59901866 TTAAACACAT-
1 TTAAACACATA
*
59901876 TAAAACAAACATA
1 TTAAAC--ACATA
59901889 TTAAACACAT-
1 TTAAACACATA
*
59901899 TTAAACACTTA
1 TTAAACACATA
59901910 TTAAACACA
1 TTAAACACA
59901919 AAACACATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 14 0.40
11 12 0.34
12 4 0.11
13 5 0.14
ACGTcount: A:0.55, C:0.19, G:0.00, T:0.26
Consensus pattern (11 bp):
TTAAACACATA
Found at i:59901913 original size:21 final size:22
Alignment explanation
Indices: 59901866--59901918 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
59901856 ACACCTGTAG
59901866 TTAAACACATTAAAACAAACATA
1 TTAAACACATTAAAAC-AACATA
* *
59901889 TTAAACACATTTAAAC-ACTTA
1 TTAAACACATTAAAACAACATA
59901910 TTAAACACA
1 TTAAACACA
59901919 AAACACATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 13 0.46
23 15 0.54
ACGTcount: A:0.55, C:0.19, G:0.00, T:0.26
Consensus pattern (22 bp):
TTAAACACATTAAAACAACATA
Found at i:59901933 original size:9 final size:9
Alignment explanation
Indices: 59901866--59901937 Score: 59
Period size: 9 Copynumber: 8.4 Consensus size: 9
59901856 ACACCTGTAG
59901866 TTAAACACA
1 TTAAACACA
59901875 TTAAA-AC-
1 TTAAACACA
*
59901882 --AAACATA
1 TTAAACACA
59901889 TTAAACACA
1 TTAAACACA
59901898 TTTAAACACTTA
1 -TTAAACAC--A
59901910 TTAAACACA
1 TTAAACACA
59901919 --AAACACA
1 TTAAACACA
59901926 TTAAACAC-
1 TTAAACACA
59901934 TTAA
1 TTAA
59901938 CTTAAATAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 19
0.71 0.03 0.26
Matches are distributed among these distances:
5 3 0.06
6 1 0.02
7 7 0.13
8 6 0.12
9 18 0.35
10 8 0.15
11 8 0.15
12 1 0.02
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (9 bp):
TTAAACACA
Found at i:59902124 original size:19 final size:20
Alignment explanation
Indices: 59902085--59902125 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
59902075 ATGAGTTATT
**
59902085 TAATGCAAGACTTAATTTAA
1 TAATGCAAGACTTAAACTAA
59902105 TAATGC-AGACTTAAACTAA
1 TAATGCAAGACTTAAACTAA
59902124 TA
1 TA
59902126 TAGGAGTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (20 bp):
TAATGCAAGACTTAAACTAA
Found at i:59902189 original size:50 final size:52
Alignment explanation
Indices: 59902085--59902193 Score: 134
Period size: 50 Copynumber: 2.1 Consensus size: 52
59902075 ATGAGTTATT
* *
59902085 TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAATATAGGAGTTACA
1 TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATAAGAGTTACA
* * * *
59902137 TAATGCAAGTCATT-ATTT-ATGATGCATACTT-AACTAACATAAGAGTTGCA
1 TAATGCAAGAC-TTAATTTAATAATGCAGACTTAAACTAACATAAGAGTTACA
59902187 TAATGCA
1 TAATGCA
59902194 TTTATTTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
50 23 0.46
51 11 0.22
52 14 0.28
53 2 0.04
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (52 bp):
TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATAAGAGTTACA
Found at i:59902271 original size:16 final size:16
Alignment explanation
Indices: 59902250--59902282 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
59902240 ATGCAAACTT
59902250 ATTAATTTAAA-TAAAA
1 ATTAA-TTAAATTAAAA
59902266 ATTAATTAAATTAAAA
1 ATTAATTAAATTAAAA
59902282 A
1 A
59902283 GTCCTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTAATTAAATTAAAA
Found at i:59902991 original size:15 final size:14
Alignment explanation
Indices: 59902965--59903000 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
59902955 AAAATAAAAG
*
59902965 AAAAACATTAAATT
1 AAAAATATTAAATT
59902979 AATAAATATTAAATT
1 AA-AAATATTAAATT
59902994 AAAAATA
1 AAAAATA
59903001 ACATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAAATATTAAATT
Found at i:59903262 original size:2 final size:2
Alignment explanation
Indices: 59903217--59903245 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
59903207 TAATTAGTTC
59903217 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
59903246 CCACTAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:59903472 original size:21 final size:22
Alignment explanation
Indices: 59903439--59903484 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
59903429 GTTAAATAAC
*
59903439 TTAAAAATTTTAAGAAA-AAATT
1 TTAAAAATATTAA-AAATAAATT
59903461 TTAAAAA-ATTAAAAATAAATT
1 TTAAAAATATTAAAAATAAATT
59903482 TTA
1 TTA
59903485 TACCTTCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 3 0.14
21 12 0.55
22 7 0.32
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAAAATATTAAAAATAAATT
Found at i:59906047 original size:20 final size:19
Alignment explanation
Indices: 59906011--59906049 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
59906001 CTTTAGGATT
*
59906011 TATTTTTTTTTCCTTCTTC
1 TATTTTTTATTCCTTCTTC
59906030 TATTTTTTATT-CTT-TTC
1 TATTTTTTATTCCTTCTTC
59906047 TAT
1 TAT
59906050 CCTTCTCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (19 bp):
TATTTTTTATTCCTTCTTC
Found at i:59906741 original size:8 final size:8
Alignment explanation
Indices: 59906728--59906760 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
59906718 CTAGATCGGC
59906728 AAAAGCCG
1 AAAAGCCG
59906736 AAAAGCCG
1 AAAAGCCG
*
59906744 AAATGCCG
1 AAAAGCCG
59906752 AAAAGCCG
1 AAAAGCCG
59906760 A
1 A
59906761 CATTTGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.24, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:59907401 original size:20 final size:20
Alignment explanation
Indices: 59907371--59907415 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
59907361 CTATTTTATT
59907371 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
59907390 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
59907410 ATGGGC
1 ATGGGC
59907416 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:59907545 original size:28 final size:27
Alignment explanation
Indices: 59907505--59907557 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
59907495 TATTGTAATA
* *
59907505 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAG-TTAACACTGATAT
59907533 GGGCTAAGGCCCAGTTAACACTGAT
1 GGGCTAAGGCCCAGTTAACACTGAT
59907558 TTCTGAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (27 bp):
GGGCTAAGGCCCAGTTAACACTGATAT
Found at i:59907571 original size:62 final size:61
Alignment explanation
Indices: 59907436--59907580 Score: 170
Period size: 61 Copynumber: 2.4 Consensus size: 61
59907426 ATATCTCGAC
* * * * *
59907436 TTGTAATAGGGCTACGACCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
*
59907497 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
59907558 TTCTGAATAGGGCT-TAGGCCCAG
1 TTGT-AATAGGGCTAT-GGCCCAG
59907581 TAAAGCTTGA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
61 42 0.58
62 31 0.42
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:59911995 original size:48 final size:48
Alignment explanation
Indices: 59911935--59912040 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
59911925 TGGCCACAAT
* *
59911935 ACATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ACATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
*
59911983 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ACATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
*
59912031 ACATATATAT
1 ACATACATAT
59912041 ATTTATCTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (48 bp):
ACATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:59915963 original size:37 final size:37
Alignment explanation
Indices: 59915910--59915995 Score: 154
Period size: 37 Copynumber: 2.3 Consensus size: 37
59915900 TTATTACGAA
59915910 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
59915947 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
59915984 GTCTCACCCGGA
1 GTCTTACCCGGA
59915996 ACATTTTCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:59916151 original size:49 final size:49
Alignment explanation
Indices: 59916096--59916315 Score: 363
Period size: 49 Copynumber: 4.5 Consensus size: 49
59916086 TTTTACAGTA
59916096 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
59916145 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
59916194 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
59916243 GCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* * *
59916290 GCCTTTCGGCCTTATCACACATATAT
1 GCCATTAGGCCTTATCACATATATAT
59916316 GTATATCATA
Statistics
Matches: 163, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
47 42 0.26
49 121 0.74
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
Found at i:59918113 original size:123 final size:123
Alignment explanation
Indices: 59917894--59918232 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
59917884 GAATTATGTG
59917894 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
59917959 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
59918017 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
59918082 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
59918140 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
59918205 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
59918233 AATTATATCC
Statistics
Matches: 208, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 208 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:59918256 original size:40 final size:40
Alignment explanation
Indices: 59918201--59918444 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
59918191 TGAATGATAC
* * * * **
59918201 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
59918241 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
59918281 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
59918321 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
59918361 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
59918401 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
59918441 CCGG
1 CCGG
59918445 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:59924685 original size:123 final size:123
Alignment explanation
Indices: 59924466--59924804 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
59924456 GAATTATGTG
59924466 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
59924531 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
59924589 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
59924654 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
59924712 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
59924777 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
59924805 AATTATATCC
Statistics
Matches: 208, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 208 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:59924828 original size:40 final size:40
Alignment explanation
Indices: 59924773--59925016 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
59924763 TGAATGATAC
* * * * **
59924773 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
59924813 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
59924853 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
59924893 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
59924933 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
59924973 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
59925013 CCGG
1 CCGG
59925017 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:59929237 original size:27 final size:27
Alignment explanation
Indices: 59929207--59929268 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
59929197 CTTAGTTTGA
59929207 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
59929234 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
59929261 AAAATTAC
1 AAAATTAC
59929269 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:59929967 original size:27 final size:28
Alignment explanation
Indices: 59929890--59929958 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
59929880 GCGTAGATCA
*
59929890 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
59929918 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
59929946 CGATA-TACCCCTA
1 CGAAATTACCCCTA
59929959 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:59933054 original size:27 final size:27
Alignment explanation
Indices: 59933024--59933085 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
59933014 CTTAGTTTGA
59933024 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
59933051 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
59933078 AAAATTAC
1 AAAATTAC
59933086 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:59933784 original size:27 final size:28
Alignment explanation
Indices: 59933707--59933775 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
59933697 GCGTAGATCA
*
59933707 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
59933735 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
59933763 CGATA-TACCCCTA
1 CGAAATTACCCCTA
59933776 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:59936063 original size:28 final size:27
Alignment explanation
Indices: 59936032--59936132 Score: 94
Period size: 28 Copynumber: 3.6 Consensus size: 27
59936022 ACTGACCGAT
*
59936032 CTCGCACACATAGTGCTCGGTTGAAGAA
1 CTCGCACACACAGTGCTCGGTT-AAGAA
** * *
59936060 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTG-CTCGGTTA-AGAA
*
59936089 CTCGCACACATAGTGCTCGGTTAACGAA
1 CTCGCACACACAGTGCTCGGTTAA-GAA
* *
59936117 TTTGCACACACAGTGC
1 CTCGCACACACAGTGC
59936133 CTCTAATCAT
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 36 0.63
29 21 0.37
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (27 bp):
CTCGCACACACAGTGCTCGGTTAAGAA
Found at i:59936423 original size:42 final size:43
Alignment explanation
Indices: 59936301--59936466 Score: 298
Period size: 43 Copynumber: 3.9 Consensus size: 43
59936291 CACCGGTATT
59936301 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACG
*
59936344 AAGCCTGCTAGGCACGAAGCCCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACG
59936387 AAGCCTGCTAGGCACGAAG-CCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACG
* *
59936429 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCG
1 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCG
59936467 AGTTTCATGC
Statistics
Matches: 120, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
42 42 0.35
43 78 0.65
ACGTcount: A:0.31, C:0.34, G:0.23, T:0.11
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACG
Found at i:59936433 original size:85 final size:86
Alignment explanation
Indices: 59936301--59936466 Score: 307
Period size: 85 Copynumber: 1.9 Consensus size: 86
59936291 CACCGGTATT
59936301 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGCCC
1 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGCCC
*
59936366 CGAATACATATCACCGGCACG
66 CGAATACACATCACCGGCACG
*
59936387 AAGCCTGCTAGGCACGAAG-CCCGAATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGCCC
59936451 CGAATACACATCACCG
66 CGAATACACATCACCG
59936467 AGTTTCATGC
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
85 59 0.76
86 19 0.24
ACGTcount: A:0.31, C:0.34, G:0.23, T:0.11
Consensus pattern (86 bp):
AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGCCC
CGAATACACATCACCGGCACG
Found at i:59938206 original size:37 final size:37
Alignment explanation
Indices: 59938156--59938227 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
59938146 TTTAGCTCGA
*
59938156 ATAATCCCCACACGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
*
59938193 ATAATCTCCACACGTAGCCATCGGGTCTTACCCGG
1 ATAATCCCCACACGTAGCCATCGGGTCTTACCCGG
59938228 AATATATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.35, G:0.21, T:0.22
Consensus pattern (37 bp):
ATAATCCCCACACGTAGCCATCGGGTCTTACCCGGGC
Found at i:59938421 original size:48 final size:48
Alignment explanation
Indices: 59938361--59938466 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
59938351 CGGCCACAAT
* *
59938361 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
59938409 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
59938457 ACATATATAT
1 ATATACATAT
59938467 ATTTATCTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:59942820 original size:33 final size:34
Alignment explanation
Indices: 59942783--59942863 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
59942773 ACATTACCAG
* *
59942783 AAACATATGTCAGATCGAAATGTCATATT-TCCA-
1 AAACATATATCAGATCGAAATATCATATTGT-CAT
* *
59942816 AAACATATTTC-GAATTGAAATATCATATTGTCAT
1 AAACATATATCAG-ATCGAAATATCATATTGTCAT
59942850 AAACATATATCAGA
1 AAACATATATCAGA
59942864 CTAAAATGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
32 1 0.03
33 26 0.65
34 12 0.30
35 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (34 bp):
AAACATATATCAGATCGAAATATCATATTGTCAT
Found at i:59942888 original size:34 final size:33
Alignment explanation
Indices: 59942780--59942893 Score: 97
Period size: 34 Copynumber: 3.4 Consensus size: 33
59942770 TACACATTAC
* *
59942780 CAGAAACATATGTCAGATCGAAATGTCATATTTC
1 CAGAAACATATATCAGAT-GAAATGTCATATTTT
* * *
59942814 CA-AAACATATTTC-GAATTGAAATATCATATTGT
1 CAGAAACATATATCAG-A-TGAAATGTCATATTTT
* * *
59942847 CATAAACATATATCAGACTAAAATGTCATGTTTT
1 CAGAAACATATATCAGA-TGAAATGTCATATTTT
*
59942881 CAGAAACACATAT
1 CAGAAACATATAT
59942894 ATCATATCAA
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
32 1 0.02
33 25 0.39
34 37 0.58
35 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (33 bp):
CAGAAACATATATCAGATGAAATGTCATATTTT
Found at i:59943425 original size:32 final size:32
Alignment explanation
Indices: 59943384--59943448 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
59943374 CTACAGCATG
59943384 ATAGAATAATTGTGTGAAAATTTCGTTAATAA
1 ATAGAATAATTGTGTGAAAATTTCGTTAATAA
59943416 ATAGAATAATTGTGTGAAAATTTCGTTAATAA
1 ATAGAATAATTGTGTGAAAATTTCGTTAATAA
59943448 A
1 A
59943449 ATTTATCTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.37
Consensus pattern (32 bp):
ATAGAATAATTGTGTGAAAATTTCGTTAATAA
Found at i:59957912 original size:35 final size:35
Alignment explanation
Indices: 59957800--59957913 Score: 140
Period size: 35 Copynumber: 3.3 Consensus size: 35
59957790 CATAGGTAAG
* **
59957800 TACATGAGAGCTTATATTGAACTTGTATATTCGCC
1 TACATGTGAGCTTATATTGAACTTGTATATTCGAT
* * *
59957835 TACAGGTGAGGTTATATTGAACTTG-AGTATTTGAT
1 TACATGTGAGCTTATATTGAACTTGTA-TATTCGAT
*
59957870 TACATGTGAGCTTATATTGAACTTGTATATTCGGT
1 TACATGTGAGCTTATATTGAACTTGTATATTCGAT
*
59957905 TATATGTGA
1 TACATGTGA
59957914 AGTTATCTTG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
34 1 0.02
35 64 0.97
36 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (35 bp):
TACATGTGAGCTTATATTGAACTTGTATATTCGAT
Found at i:59967873 original size:40 final size:40
Alignment explanation
Indices: 59967787--59967953 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
59967777 TCTTCGGAAT
** * *
59967787 TTAG-CCGGATATAACCACAAGCACAATTG-CTTCGGGTC
1 TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
* * ** * *
59967825 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGCC
1 TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
* * *
59967865 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
* * **
59967905 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGAAC
1 TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
59967945 TTAGCCCGG
1 TTAGCCCGG
59967954 GTATCATTCA
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
38 3 0.03
39 17 0.17
40 82 0.80
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGTC
Found at i:59967913 original size:80 final size:79
Alignment explanation
Indices: 59967778--59967953 Score: 203
Period size: 80 Copynumber: 2.2 Consensus size: 79
59967768 AACCGAGTCT
* * * **
59967778 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCTTCGGGTCTTAACCCGGATTTGGTA
1 CTTCGGAACTTAGCCCGGATATAACAACAAGCACAATTGCTTCGGGTCTTAACCCGGATATAATA
*
59967842 ACTTGCACAAATGC
66 ACTAGCACAAATGC
** ** *
59967856 CTTCGGGCCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGAACTTAGCCCGGATATAACAACAAGCAC-AATTG-CTTCGGGTCTTAACCCGGATATAA
* *
59967920 TCACTAGCATAAATGC
64 TAACTAGCACAAATGC
59967936 CTTCGGAACTTAGCCCGG
1 CTTCGGAACTTAGCCCGG
59967954 GTATCATTCA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 10 0.12
79 19 0.24
80 51 0.64
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGAACTTAGCCCGGATATAACAACAAGCACAATTGCTTCGGGTCTTAACCCGGATATAATA
ACTAGCACAAATGC
Found at i:59972267 original size:40 final size:40
Alignment explanation
Indices: 59972222--59972351 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
59972212 CGGAATATAA
59972222 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
59972262 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
59972302 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
59972342 CCGGATATAA
1 CCGGATATAA
59972352 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:59972366 original size:40 final size:40
Alignment explanation
Indices: 59972238--59972389 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
59972228 ATAAGCATGT
* * *
59972238 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
59972278 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
59972318 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
59972358 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
59972390 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:59972372 original size:80 final size:80
Alignment explanation
Indices: 59972238--59972389 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
59972228 ATAAGCATGT
* *
59972238 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
59972303 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
59972318 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
59972381 CCCGGATAT
64 CCCGGATAT
59972390 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:59974967 original size:55 final size:54
Alignment explanation
Indices: 59974889--59975143 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
59974879 ATTAGGGTTT
* *
59974889 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
59974944 AAGGAAATCATATAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * * *
59974999 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATATAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
59975052 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* ** *
59975101 AAGGATACCACATAAGACCATGAAAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATTGGTAAG
59975144 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 38 0.22
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATATAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:59975069 original size:53 final size:53
Alignment explanation
Indices: 59974889--59975096 Score: 258
Period size: 55 Copynumber: 3.8 Consensus size: 53
59974879 ATTAGGGTTT
*
59974889 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * *
59974944 AAGGAAATCATATAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
59974999 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
59975052 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
59975097 TCAAAAGGAT
Statistics
Matches: 130, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 6 0.05
53 44 0.34
54 8 0.06
55 68 0.52
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:59975095 original size:108 final size:110
Alignment explanation
Indices: 59974896--59975096 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
59974886 TTTAAGGATA
* *
59974896 CCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATATAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATATAAGA
*
59974961 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
59975006 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATATAAG
*
59975068 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
59975097 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATATAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:59975356 original size:16 final size:16
Alignment explanation
Indices: 59975335--59975365 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59975325 ATAAATTTGA
59975335 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
59975351 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
59975366 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:59977417 original size:17 final size:17
Alignment explanation
Indices: 59977395--59977433 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
59977385 ATAAAACAAT
59977395 AGAAAGTGGATTGAAAG
1 AGAAAGTGGATTGAAAG
59977412 AGAAAGTGGATTGAAAG
1 AGAAAGTGGATTGAAAG
59977429 AGAAA
1 AGAAA
59977434 CACAATTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.33, T:0.15
Consensus pattern (17 bp):
AGAAAGTGGATTGAAAG
Found at i:59980495 original size:62 final size:59
Alignment explanation
Indices: 59980387--59980501 Score: 167
Period size: 62 Copynumber: 1.9 Consensus size: 59
59980377 CTTTAATATT
* * *
59980387 AAATTAATATAATATTTATTAAGATAAATATTAGATTAAATTTAATATTAAATCTTATC
1 AAATTAATAGAATATTTATTAAGATAAAAATTAAATTAAATTTAATATTAAATCTTATC
*
59980446 AAATTAATAGAATATTTATCTATAATATAAAAATTAAATTAAATTTAATATTAAAT
1 AAATTAATAGAATATTTA--T-TAAGATAAAAATTAAATTAAATTTAATATTAAAT
59980502 TAATAAAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 17 0.35
61 1 0.02
62 31 0.63
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.43
Consensus pattern (59 bp):
AAATTAATAGAATATTTATTAAGATAAAAATTAAATTAAATTTAATATTAAATCTTATC
Found at i:59980500 original size:17 final size:17
Alignment explanation
Indices: 59980473--59980549 Score: 72
Period size: 17 Copynumber: 4.7 Consensus size: 17
59980463 ATCTATAATA
*
59980473 TAAAAATTAAATTAAAT
1 TAAATATTAAATTAAAT
*
59980490 TTAATATTAAATT-AAT
1 TAAATATTAAATTAAAT
* *
59980506 AAAATACT--ATTAAGA-
1 TAAATATTAAATTAA-AT
*
59980521 TAAGTATTAAATTAAAT
1 TAAATATTAAATTAAAT
59980538 TAAATATTAAAT
1 TAAATATTAAAT
59980550 CTATTAAAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
14 3 0.07
15 6 0.13
16 10 0.22
17 27 0.59
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAATATTAAATTAAAT
Found at i:60000518 original size:3 final size:3
Alignment explanation
Indices: 60000510--60000570 Score: 113
Period size: 3 Copynumber: 20.0 Consensus size: 3
60000500 CAAAAGAGAT
60000510 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
60000558 TAA TAAA TAA TAA
1 TAA T-AA TAA TAA
60000571 ATCAAGTAGG
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:60021221 original size:13 final size:13
Alignment explanation
Indices: 60021203--60021241 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
60021193 CTCATACACG
60021203 GAATTGTCGACTC
1 GAATTGTCGACTC
60021216 GAATTGTCGACTC
1 GAATTGTCGACTC
* *
60021229 GGATTGTCTACTC
1 GAATTGTCGACTC
60021242 TATAACCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (13 bp):
GAATTGTCGACTC
Found at i:60026469 original size:40 final size:40
Alignment explanation
Indices: 60026424--60026589 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
60026414 CGGAATATAA
60026424 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
60026464 CCGGATAGAATAACTCGCACGAATG-CTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
60026503 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60026543 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60026582 CCGGATAT
1 CCGGATAT
60026590 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60026493 original size:39 final size:39
Alignment explanation
Indices: 60026440--60026549 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 39
60026430 ATAATCACGT
* *
60026440 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
* * *
60026480 GCACGAATG-CTTCGGGCCTTAGCCCGGATATAACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
*
60026519 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
60026550 TAATTTCCAG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.03
39 31 0.52
40 27 0.45
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
Found at i:60029057 original size:40 final size:40
Alignment explanation
Indices: 60028965--60029113 Score: 171
Period size: 39 Copynumber: 3.8 Consensus size: 40
60028955 AAATTGAATG
* * *
60028965 ATATCCGGGCTAAG-CCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* **
60029003 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
60029043 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGT-TTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* *
60029082 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
60029114 AAATCGTGAT
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
38 13 0.14
39 47 0.49
40 35 0.37
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:60037062 original size:122 final size:120
Alignment explanation
Indices: 60036847--60037064 Score: 269
Period size: 122 Copynumber: 1.8 Consensus size: 120
60036837 ATTATGTGAG
** ** * * **
60036847 ATGAAATATGATGTGTATGATTATTGATTATGTGTGTATGAGTATTTGAATTCTACCCGGGCTAA
1 ATGAAATATGATGTCAATGATTATTGATTATGTGTACATGAGAAATTGAATGATACCCGGGCTAA
* * **
60036912 GTCCCGAAGGCGAATATGCTTGTGATTATATTTGCGTTGAGCCTTAGTAACGAAA
66 GTCCCGAAGACGAATATGCTGGAAATTATATTTGCGTTGAGCCTTAGTAACGAAA
*
60036967 ATGAAATATGTATGTCCAATGATTATTGATGTATGTGTACATGAGAAATTGAATGATATCCGGGC
1 ATGAAATATG-ATGT-CAATGATTATTGAT-TATGTGTACATGAGAAATTGAATGATACCCGGGC
60037032 TAAG-CCCGAAGAC-AATTATGCTGGAAATTATAT
63 TAAGTCCCGAAGACGAA-TATGCTGGAAATTATAT
60037065 CCGGGTTAAG
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
120 10 0.12
121 6 0.07
122 34 0.42
123 31 0.38
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (120 bp):
ATGAAATATGATGTCAATGATTATTGATTATGTGTACATGAGAAATTGAATGATACCCGGGCTAA
GTCCCGAAGACGAATATGCTGGAAATTATATTTGCGTTGAGCCTTAGTAACGAAA
Found at i:60037088 original size:40 final size:38
Alignment explanation
Indices: 60037022--60037204 Score: 136
Period size: 40 Copynumber: 4.6 Consensus size: 38
60037012 AAATTGAATG
* *
60037022 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTG-TGGAAATT
* * ****
60037061 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTG-TGGAAATT
**
60037101 ATATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGTG-GAAATT
* *
60037141 CTATCCGGGCTAAGACCCGAAGGCATT-TGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTGTGTGGAAAT--T
* * *
60037180 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
60037205 CTTGGTGCGG
Statistics
Matches: 117, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 18 0.15
40 93 0.79
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGTGGAAATT
Found at i:60037185 original size:80 final size:80
Alignment explanation
Indices: 60037020--60037204 Score: 198
Period size: 80 Copynumber: 2.3 Consensus size: 80
60037010 AGAAATTGAA
* *
60037020 TGATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGC
* * *
60037085 AATTGTGCTAGTGGC
66 AATTGTGCAAATCGC
* ** *
60037100 T-ATATCCGGGCTAAGACCCGAAGGC-ATTCGTG-TGAGTCATTCTATCCGGGCTAAGACCCGAA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAA
*
60037162 GGCATTTGTGCAAATCG-
63 GGCAATTGTGCAAATCGC
* *
60037179 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
60037205 CTTGGTGCGG
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
79 20 0.23
80 68 0.77
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGC
AATTGTGCAAATCGC
Found at i:60038792 original size:17 final size:19
Alignment explanation
Indices: 60038769--60038814 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
60038759 AAGAAGCATG
60038769 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
60038787 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
60038805 AATCATGCTC
1 AATCATGCTC
60038815 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:60043424 original size:49 final size:49
Alignment explanation
Indices: 60043366--60043495 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 49
60043356 GTTGTGTGTC
* *
60043366 AGTGTAAGACCTGTCTGGGAGATGGCATCGACAC-CGATAGAT-AAGAGCT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGAC-CTCGATAGATGAA-AGCT
* * * *
60043415 AGTGTAAGACCTGTCTAGGACATGGCATTGGCCTCGATATATGAAAGTT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAGCT
*
60043464 AGTTTAAGACCTGTCTAGGACATGGCATCGAC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGAC
60043496 TTTGATGTGT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 67 0.96
50 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAGCT
Found at i:60043488 original size:142 final size:145
Alignment explanation
Indices: 60043269--60043537 Score: 341
Period size: 142 Copynumber: 1.9 Consensus size: 145
60043259 GTATTGAGAC
* *
60043269 GAGCTAGTGTAAGGCATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACCT
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACCT
* * * * * *
60043334 GTTTGGGACATGGCGTCAAC-TTGTTGTG-T-GTCAGTGTAAGACC-TGTCTGGGAGATGGCATC
66 GTCTAGGACATGGCATCAACTTTGATGTGTTAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
60043395 GACACCGATAGATAA
131 GACACCGATAGATAA
* ** * * *
60043410 GAGCTAGTGTAAGACCTGTCTAGGACATGGCATTGGCCTCGATATATGA-AAGTTAGTTTAAGAC
1 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATCAGCCTCGAGATAT-ACAAGCTAGTGTAAGAC
* *
60043474 CTGTCTAGGACATGGCATCGACTTTGATGTGTTAGCCAGTGTAGGACCATGTCTGGGACATGGC
64 CTGTCTAGGACATGGCATCAACTTTGATGTGTTAGCCAGTGTAAGACCATGTCTGGGACATGGC
60043538 GTCGGCATCT
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
141 25 0.24
142 46 0.43
143 8 0.08
144 1 0.01
145 12 0.11
146 14 0.13
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (145 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACCT
GTCTAGGACATGGCATCAACTTTGATGTGTTAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
GACACCGATAGATAA
Found at i:60050810 original size:79 final size:81
Alignment explanation
Indices: 60050701--60050883 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
60050691 TACTCGTTCA
* *
60050701 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* * *
60050764 ATTTAGTGAC-TCGCACC
65 ATATAGTCACTTAGCA-C
**
60050781 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
60050844 TATAGTCACTTAGCAC
66 TATAGTCACTTAGCAC
*
60050860 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
60050884 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTCACTTAGCAC
Found at i:60050883 original size:40 final size:40
Alignment explanation
Indices: 60050680--60050883 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
60050670 CGGAATTTAA
** *
60050680 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60050720 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
60050760 CCGGATTTAGTGACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
60050799 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
60050839 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60050879 CCGGA
1 CCGGA
60050884 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60058823 original size:40 final size:40
Alignment explanation
Indices: 60058779--60058962 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
60058769 GCTACACGTT
*
60058779 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
60058819 CAAATGCCTTCCGGACTTAACTCGGATT-TAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
60058859 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
60058898 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
60058939 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
60058963 ACATCATTCG
Statistics
Matches: 117, Mismatches: 19, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 72 0.62
41 14 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:60058881 original size:79 final size:80
Alignment explanation
Indices: 60058781--60058963 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 80
60058771 TACACGTTCA
* *
60058781 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCCGGA-CTTAACTC-G
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTT-CGGATCTT-ACTCTG
* * *
60058843 GATTTAGTGAC-TCGCACC
63 GATATAGTCACTTAGCA-C
*
60058861 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCTGGAT
60058925 ATAGTCACTTAGCAC
66 ATAGTCACTTAGCAC
*
60058940 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
60058964 CATCATTCGA
Statistics
Matches: 91, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
78 7 0.08
79 56 0.62
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCTGGAT
ATAGTCACTTAGCAC
Found at i:60061859 original size:2 final size:2
Alignment explanation
Indices: 60061852--60061880 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
60061842 GAGACTAGTC
60061852 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
60061881 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60062834 original size:35 final size:35
Alignment explanation
Indices: 60062794--60062862 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
60062784 CTTGTTTATA
60062794 ACCTTACCACATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACACATC
60062829 ACCTTACCACATCCTGGTCACTTAATGAACACAT
1 ACCTTACCACATCCTGGTCACTTAATGAACACAT
60062863 TATTCACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.32, C:0.33, G:0.09, T:0.26
Consensus pattern (35 bp):
ACCTTACCACATCCTGGTCACTTAATGAACACATC
Found at i:60066103 original size:2 final size:2
Alignment explanation
Indices: 60066096--60066122 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
60066086 GAGACTAGTC
60066096 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
60066123 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60067076 original size:35 final size:35
Alignment explanation
Indices: 60067036--60067104 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
60067026 CTTGTTTATA
60067036 ACCTTACCACATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACACATC
60067071 ACCTTACCACATCCTGGTCACTTAATGAACACAT
1 ACCTTACCACATCCTGGTCACTTAATGAACACAT
60067105 TATTCACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.32, C:0.33, G:0.09, T:0.26
Consensus pattern (35 bp):
ACCTTACCACATCCTGGTCACTTAATGAACACATC
Found at i:60069738 original size:5 final size:5
Alignment explanation
Indices: 60069728--60069821 Score: 64
Period size: 6 Copynumber: 17.2 Consensus size: 5
60069718 TATGTCTTTC
* *
60069728 AAAAT AAAAT AATAAT AAAATT TAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AA-AAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
* *
60069779 AAAAA ATAAAG AAAAT AAAAAT AAGAAT -AAAT AAAAT AAAAT A
1 AAAAT A-AAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT AAAAT A
60069822 GGAGGATTCA
Statistics
Matches: 72, Mismatches: 9, Indels: 16
0.74 0.09 0.16
Matches are distributed among these distances:
4 3 0.04
5 31 0.43
6 38 0.53
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:60069761 original size:17 final size:16
Alignment explanation
Indices: 60069741--60069800 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
60069731 ATAAAATAAT
*
60069741 AATAAAATTTAAATGAA
1 AATAAAAATTAAA-GAA
*
60069758 AATAAAAATCAAAAGAAA
1 AATAAAAAT-TAAAG-AA
*
60069776 AATAAAAAATAAAGAA
1 AATAAAAATTAAAGAA
60069792 AATAAAAAT
1 AATAAAAAT
60069801 AAGAATAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 10 0.28
17 13 0.36
18 13 0.36
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (16 bp):
AATAAAAATTAAAGAA
Found at i:60069793 original size:34 final size:34
Alignment explanation
Indices: 60069728--60069814 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 34
60069718 TATGTCTTTC
* * **
60069728 AAAATAAAATAATAATAAAATTTAAATGAAAATA
1 AAAATAAAAGAAAAATAAAAAATAAATGAAAATA
60069762 AAAATCAAAAGAAAAATAAAAAATAAA-GAAAATA
1 AAAAT-AAAAGAAAAATAAAAAATAAATGAAAATA
60069796 AAAAT--AAGAATAAATAAAA
1 AAAATAAAAGAA-AAATAAAA
60069815 TAAAATAGGA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
31 5 0.11
32 8 0.17
34 17 0.36
35 17 0.36
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (34 bp):
AAAATAAAAGAAAAATAAAAAATAAATGAAAATA
Found at i:60069807 original size:21 final size:22
Alignment explanation
Indices: 60069768--60069819 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
60069758 AATAAAAATC
*
60069768 AAAAGAAAAATAAAAAATAAAG
1 AAAATAAAAATAAAAAATAAAG
* *
60069790 AAAATAAAAAT-AAGAATAAAT
1 AAAATAAAAATAAAAAATAAAG
60069811 AAAATAAAA
1 AAAATAAAA
60069820 TAGGAGGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (22 bp):
AAAATAAAAATAAAAAATAAAG
Found at i:60069810 original size:16 final size:15
Alignment explanation
Indices: 60069756--60069814 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 15
60069746 AATTTAAATG
60069756 AAAATAAAAATCAAAAGA
1 AAAATAAAAAT---AAGA
60069774 AAAATAAAAAATAA-A
1 AAAAT-AAAAATAAGA
60069789 GAAAATAAAAATAAGA
1 -AAAATAAAAATAAGA
60069805 ATAAATAAAA
1 A-AAATAAAA
60069815 TAAAATAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
15 10 0.27
16 16 0.43
18 5 0.14
19 6 0.16
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (15 bp):
AAAATAAAAATAAGA
Found at i:60093340 original size:43 final size:43
Alignment explanation
Indices: 60093275--60093512 Score: 221
Period size: 43 Copynumber: 5.5 Consensus size: 43
60093265 TACTTTGGTT
*
60093275 TATCCGATGATGCACTGTGTGTGCTAATATATTTGCTTCGATA
1 TATCCGATGATGCACTGTGTGTGCTAATATATTTGCTTTGATA
* * * * * * *
60093318 TATCCGATGATGCATTGCGTGTGCCAGTATATTT-TTTTTAGTT
1 TATCCGATGATGCACTGTGTGTGCTAATATATTTGCTTTGA-TA
* *
60093361 TATCCGATGATGCACTAGTGTGT-C-AATATATTTTCTTTGGTA
1 TATCCGATGATGCACT-GTGTGTGCTAATATATTTGCTTTGATA
* * * *
60093403 TATCTGATGATACACTGTGTGTGCTAGTATATTTGCTTTGGTA
1 TATCCGATGATGCACTGTGTGTGCTAATATATTTGCTTTGATA
* * * * * * * *
60093446 TATCCGATGATACACTATGTCTGCCAGTATATTTTCTTTGGTTT
1 TATCCGATGATGCACTGTGTGTGCTAATATATTTGCTTT-GATA
*
60093490 TATCTGATGATGCACTGTGTGTG
1 TATCCGATGATGCACTGTGTGTG
60093513 GTAGTATAGT
Statistics
Matches: 159, Mismatches: 30, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
41 6 0.04
42 27 0.17
43 100 0.63
44 26 0.16
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.43
Consensus pattern (43 bp):
TATCCGATGATGCACTGTGTGTGCTAATATATTTGCTTTGATA
Found at i:60093405 original size:85 final size:85
Alignment explanation
Indices: 60093267--60093512 Score: 287
Period size: 85 Copynumber: 2.9 Consensus size: 85
60093257 ATAGGTTATA
* * * * *
60093267 CTTTGGTTTATCCGATGATGCACT-GTGTGTGCTAATATATTTGCTTCGATATATCCGATGATGC
1 CTTTAGTTTATCCGATGATGCACTAGTGTGT-C-AATATATTTTCTTTGGTATATCTGATGATGC
* * *
60093331 ATTGCGTGTGCCAGTATATTTT
64 ACTGTGTGTGCCAGTATATTTG
* *
60093353 TTTTAGTTTATCCGATGATGCACTAGTGTGTCAATATATTTTCTTTGGTATATCTGATGATACAC
1 CTTTAGTTTATCCGATGATGCACTAGTGTGTCAATATATTTTCTTTGGTATATCTGATGATGCAC
*
60093418 TGTGTGTGCTAGTATATTTG
66 TGTGTGTGCCAGTATATTTG
* * * * * * *
60093438 CTTTGGTATATCCGATGATACACTATGTCTGCCAGTATATTTTCTTTGGTTTTATCTGATGATGC
1 CTTTAGTTTATCCGATGATGCACTA-GTGTGTCAATATATTTTCTTTGG-TATATCTGATGATGC
60093503 ACTGTGTGTG
64 ACTGTGTGTG
60093513 GTAGTATAGT
Statistics
Matches: 137, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
85 65 0.47
86 43 0.31
87 29 0.21
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.44
Consensus pattern (85 bp):
CTTTAGTTTATCCGATGATGCACTAGTGTGTCAATATATTTTCTTTGGTATATCTGATGATGCAC
TGTGTGTGCCAGTATATTTG
Found at i:60093510 original size:128 final size:128
Alignment explanation
Indices: 60093267--60093511 Score: 348
Period size: 128 Copynumber: 1.9 Consensus size: 128
60093257 ATAGGTTATA
* * *
60093267 CTTTGGTTTATCCGATGATGCACTGTGTGTGCTAATATATTTGCTTCGATATATCCGATGATGCA
1 CTTTGGTATATCCGATGATACACTGTGTGTGCTAATATATTTGCTTCGATATATCCGATGATACA
* * * *
60093332 TTGCGTGTGCCAGTATATTTTTTTTAGTTTATCCGATGATGCACTAGTGTGTCAATATATTTT
66 CTACGTCTGCCAGTATATTTTCTTTAGTTTATCCGATGATGCACTAGTGTGTCAATATATTTT
* * * *
60093395 CTTTGGTATATCTGATGATACACTGTGTGTGCTAGTATATTTGCTTTGGTATATCCGATGATACA
1 CTTTGGTATATCCGATGATACACTGTGTGTGCTAATATATTTGCTTCGATATATCCGATGATACA
* * *
60093460 CTATGTCTGCCAGTATATTTTCTTTGGTTTTATCTGATGATGCACT-GTGTGT
66 CTACGTCTGCCAGTATATTTTCTTTAG-TTTATCCGATGATGCACTAGTGTGT
60093512 GGTAGTATAG
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
128 85 0.83
129 17 0.17
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.44
Consensus pattern (128 bp):
CTTTGGTATATCCGATGATACACTGTGTGTGCTAATATATTTGCTTCGATATATCCGATGATACA
CTACGTCTGCCAGTATATTTTCTTTAGTTTATCCGATGATGCACTAGTGTGTCAATATATTTT
Found at i:60093563 original size:87 final size:85
Alignment explanation
Indices: 60093361--60093531 Score: 191
Period size: 87 Copynumber: 2.0 Consensus size: 85
60093351 TTTTTTAGTT
* * * *
60093361 TATCCGATGATGCACTA-GTGTGTCAATATATTTTCTTTGGTATATCTGATGATACACTGTGTGT
1 TATCCGATGATACACTACG-CTGCCAGTATATTTTCTTTGGTATATCTGATGATACACTGTGTGT
* * ***
60093425 GCTAGTATATTTGCTTTGGTA
65 GCTAGTATAGTAGCTTCAATA
* * *
60093446 TATCCGATGATACACTATGTCTGCCAGTATATTTTCTTTGGTTTTATCTGATGATGCACTGTGTG
1 TATCCGATGATACACTACG-CTGCCAGTATATTTTCTTTGG-TATATCTGATGATACACTGTGTG
*
60093511 TGGTAGTATAGTAGCTTCAAT
64 TGCTAGTATAGTAGCTTCAAT
60093532 TTCATCTGGT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
85 16 0.22
86 20 0.28
87 36 0.50
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.43
Consensus pattern (85 bp):
TATCCGATGATACACTACGCTGCCAGTATATTTTCTTTGGTATATCTGATGATACACTGTGTGTG
CTAGTATAGTAGCTTCAATA
Found at i:60096345 original size:13 final size:13
Alignment explanation
Indices: 60096329--60096353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60096319 CAAACAAAAT
60096329 TTTCATGAAATCA
1 TTTCATGAAATCA
60096342 TTTCATGAAATC
1 TTTCATGAAATC
60096354 CTAGACCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TTTCATGAAATCA
Found at i:60099988 original size:15 final size:16
Alignment explanation
Indices: 60099959--60099988 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60099949 CAAACATGCT
60099959 TTAACACATTATCAAA
1 TTAACACATTATCAAA
60099975 TTAACACA-TATCAA
1 TTAACACATTATCAA
60099989 CAAGGCACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:60103407 original size:25 final size:24
Alignment explanation
Indices: 60103333--60103415 Score: 64
Period size: 25 Copynumber: 3.3 Consensus size: 24
60103323 TTTATCTCAT
* *
60103333 ATTAATTTAATTAATTAGAGATAAA
1 ATTATTTTAATTAATTAGTGAT-AA
*
60103358 ATAATCATTTAATT-ATTA-TGAATAA
1 ATTAT--TTTAATTAATTAGTG-ATAA
60103383 ATTATTTTAATTCAATTAGTGAT-A
1 ATTATTTTAATT-AATTAGTGATAA
60103407 ATATATTTT
1 AT-TATTTT
60103416 CTTTTGCATA
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
23 7 0.15
24 3 0.06
25 22 0.47
26 8 0.17
27 7 0.15
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (24 bp):
ATTATTTTAATTAATTAGTGATAA
Found at i:60104859 original size:27 final size:27
Alignment explanation
Indices: 60104829--60105046 Score: 222
Period size: 27 Copynumber: 8.0 Consensus size: 27
60104819 ACAGTCCATC
* * *
60104829 CAAATTTCACTACAAAGGCTCTTCTTT
1 CAAAGTTCACCACAAAGGCTTTTCTTT
*
60104856 CAAAGTTCGCCACAAAGGCTTTTCTTT
1 CAAAGTTCACCACAAAGGCTTTTCTTT
* *
60104883 CAAAGTTCACCATAAAGGCTCTTCTTT
1 CAAAGTTCACCACAAAGGCTTTTCTTT
*
60104910 CAGAA-TTCAGCACAAAGGCTTTTCTTT
1 CA-AAGTTCACCACAAAGGCTTTTCTTT
* * *
60104937 TAAAGTTCATCAAAAAGGCTTTTCTTT
1 CAAAGTTCACCACAAAGGCTTTTCTTT
* * * *
60104964 TAGAGTTCGCCACAAAGACTTTTCTTT
1 CAAAGTTCACCACAAAGGCTTTTCTTT
* * ** *
60104991 TAGAGTTTGCCACAAAGGTTTTTCTTT
1 CAAAGTTCACCACAAAGGCTTTTCTTT
* *
60105018 CAGAGTTCATCACAAAGGCTTTTTCTTT
1 CAAAGTTCACCACAAAGGC-TTTTCTTT
60105046 C
1 C
60105047 TTGACATGTT
Statistics
Matches: 162, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 149 0.92
28 11 0.07
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (27 bp):
CAAAGTTCACCACAAAGGCTTTTCTTT
Found at i:60104944 original size:81 final size:81
Alignment explanation
Indices: 60104840--60105046 Score: 245
Period size: 81 Copynumber: 2.5 Consensus size: 81
60104830 AAATTTCACT
* ** * *
60104840 ACAAAGGCTCTTCTTTCAAAGTTCGCCACAAAGGCTTTTCTTTCAAAGTTCACCATAAAGGCTCT
1 ACAAAGGCTTTTCTTTCAAAGTTCATCACAAAGGCTTTTCTTTCAAAGTTCACCACAAAGACTCT
60104905 TCTTTCAGAATTCAG-C
66 TCTTTCAGAATT-AGCC
* * * * * *
60104921 ACAAAGGCTTTTCTTTTAAAGTTCATCAAAAAGGCTTTTCTTTTAGAGTTCGCCACAAAGACTTT
1 ACAAAGGCTTTTCTTTCAAAGTTCATCACAAAGGCTTTTCTTTCAAAGTTCACCACAAAGACTCT
* * *
60104986 TCTTTTAGAGTTTGCC
66 TCTTTCAGAATTAGCC
* *
60105002 ACAAAGGTTTTTCTTTCAGAGTTCATCACAAAGGCTTTTTCTTTC
1 ACAAAGGCTTTTCTTTCAAAGTTCATCACAAAGGC-TTTTCTTTC
60105047 TTGACATGTT
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 96 0.91
82 8 0.08
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (81 bp):
ACAAAGGCTTTTCTTTCAAAGTTCATCACAAAGGCTTTTCTTTCAAAGTTCACCACAAAGACTCT
TCTTTCAGAATTAGCC
Found at i:60110672 original size:43 final size:42
Alignment explanation
Indices: 60110611--60110719 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 42
60110601 AATGCCAACG
* *
60110611 TCCCAGACATGGTCTTACATGTAATCAAATATCGAGGCCACTA
1 TCCCAAACATGGTCTTACATGTAATCAAATA-CGAGGCCAATA
* *** ** *
60110654 TCCCAAACAGGGTCTTACACAAAATCAAATACGATTCCAATG
1 TCCCAAACATGGTCTTACATGTAATCAAATACGAGGCCAATA
*
60110696 TCCCAAACATGCTCTTACATGTAA
1 TCCCAAACATGGTCTTACATGTAA
60110720 ATCTCAAATC
Statistics
Matches: 52, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.25
Consensus pattern (42 bp):
TCCCAAACATGGTCTTACATGTAATCAAATACGAGGCCAATA
Found at i:60110722 original size:43 final size:44
Alignment explanation
Indices: 60110604--60110722 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 44
60110594 CTCGTACAAT
* *
60110604 GCCAACGTCCCAGACATGGTCTTACATGT-AATCAAATATCGAG
1 GCCAATGTCCCAAACATGGTCTTACATGTAAATCAAATATCGAG
* * * ** *
60110647 GCCACTATCCCAAACAGGGTCTTACA-CAAAATCAAATA-CGAT
1 GCCAATGTCCCAAACATGGTCTTACATGTAAATCAAATATCGAG
* *
60110689 TCCAATGTCCCAAACATGCTCTTACATGTAAATC
1 GCCAATGTCCCAAACATGGTCTTACATGTAAATC
60110723 TCAAATCAAT
Statistics
Matches: 59, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
42 24 0.41
43 35 0.59
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (44 bp):
GCCAATGTCCCAAACATGGTCTTACATGTAAATCAAATATCGAG
Found at i:60115781 original size:53 final size:54
Alignment explanation
Indices: 60115649--60115903 Score: 240
Period size: 55 Copynumber: 4.8 Consensus size: 54
60115639 ACACGGGTAC
* ** * *
60115649 CTTACCATTGCCATGAATTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
60115698 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
60115751 CTCACCAATGCTATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
60115806 CTTATCAATGCCATGTCTAGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
60115859 CCTTACCAATTGCCATGCCTT-AGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTT
60115904 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.29
54 11 0.07
55 67 0.40
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:60117287 original size:43 final size:43
Alignment explanation
Indices: 60117218--60117301 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
60117208 AAATTGTACA
* *
60117218 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACGTCCCAGACGTGGCCTTAC-TCGTAAACACATATCG
60117261 ATGCC-ACTGTCCCAGACAG-GGCCTTACTCGTAAACACATAT
1 ATGCCAAC-GTCCCAGAC-GTGGCCTTACTCGTAAACACATAT
60117302 TAGAATCACA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
42 3 0.08
43 32 0.89
44 1 0.03
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGCCTTACTCGTAAACACATATCG
Found at i:60120786 original size:40 final size:40
Alignment explanation
Indices: 60120730--60120911 Score: 190
Period size: 40 Copynumber: 4.5 Consensus size: 40
60120720 GGATATGGCG
* * * **
60120730 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TGGTA
* *
60120770 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTGGTA
*
60120810 ACTCGCACAATTGCCTTCGGGA-ATTAACCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACA-TAACCCGGATTTGGTA
* * *
60120850 ACTCGCACAAATGCCTTCGGGA-ATTAACCCAGATTTAGTC
1 ACTCGCACAAATGCCTTCGGGACA-TAACCCGGATTTGGTA
* *
60120890 ACTTAGCACAAAAGCCTTCGGG
1 AC-TCGCACAAATGCCTTCGGG
60120912 GCTTAGCCCG
Statistics
Matches: 123, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
40 104 0.85
41 19 0.15
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTGGTA
Found at i:60120826 original size:80 final size:81
Alignment explanation
Indices: 60120737--60120922 Score: 216
Period size: 80 Copynumber: 2.3 Consensus size: 81
60120727 GCGACTCGCT
* * *
60120737 CAAAAGCCTTCGGGACATAGCCCGG-TTATAATAGCTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAAAGCCTTCGGGACATAGCCCGGATT-TAATAACTCGCACAAATGCCTTCGGGAATTAACCCA
* *
60120801 GATTTGGTAAC-TCGCA
65 GATTTAGTAACTTAGCA
** * **
60120817 CAATTGCCTTCGGGA-ATTAACCCGGATTTGGTAACTCGCACAAATGCCTTCGGGAATTAACCCA
1 CAAAAGCCTTCGGGACA-TAGCCCGGATTTAATAACTCGCACAAATGCCTTCGGGAATTAACCCA
*
60120881 GATTTAGTCACTTAGCA
65 GATTTAGTAACTTAGCA
* *
60120898 CAAAAGCCTTCGGGGCTTAGCCCGG
1 CAAAAGCCTTCGGGACATAGCCCGG
60120923 GTATCATTCA
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
79 1 0.01
80 60 0.70
81 25 0.29
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAAGCCTTCGGGACATAGCCCGGATTTAATAACTCGCACAAATGCCTTCGGGAATTAACCCAG
ATTTAGTAACTTAGCA
Found at i:60120911 original size:41 final size:40
Alignment explanation
Indices: 60120771--60120911 Score: 210
Period size: 40 Copynumber: 3.5 Consensus size: 40
60120761 GTTATAATAG
*
60120771 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAA
1 CTCGCACAAATGCCTTCGGGAATTAACCCGGATTTGGTAA
*
60120811 CTCGCACAATTGCCTTCGGGAATTAACCCGGATTTGGTAA
1 CTCGCACAAATGCCTTCGGGAATTAACCCGGATTTGGTAA
* * *
60120851 CTCGCACAAATGCCTTCGGGAATTAACCCAGATTTAGTCA
1 CTCGCACAAATGCCTTCGGGAATTAACCCGGATTTGGTAA
* *
60120891 CTTAGCACAAAAGCCTTCGGG
1 C-TCGCACAAATGCCTTCGGG
60120912 GCTTAGCCCG
Statistics
Matches: 92, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 75 0.82
41 17 0.18
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGAATTAACCCGGATTTGGTAA
Found at i:60122539 original size:27 final size:27
Alignment explanation
Indices: 60122510--60122679 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
60122500 CCAATTACTG
* *
60122510 AAATACCCTCGATTTGTAAATTTACCG
1 AAATACCCTCGATTTGTAAAATTACCA
* *
60122537 AAATACCTTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCA
* * * *
60122564 AAATACCCTTGGTTTATAAAATCACCA
1 AAATACCCTCGATTTGTAAAATTACCA
* *
60122591 AAATACCC-CTAGTTTGTAAAATTACTA
1 AAATACCCTCGA-TTTGTAAAATTACCA
* *
60122618 AAATACCCTTTG-TTTATAAAATTACCA
1 AAATACCC-TCGATTTGTAAAATTACCA
* * * *
60122645 AAATATCCAT-GGTTTGAAAAATTACTA
1 AAATA-CCCTCGATTTGTAAAATTACCA
60122672 AAATACCC
1 AAATACCC
60122680 CTGTAGGGTA
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
26 3 0.03
27 108 0.96
28 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTACCA
Found at i:60122645 original size:81 final size:81
Alignment explanation
Indices: 60122553--60122708 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
60122543 CTTCGACTTG
* **
60122553 TAAAATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTAGT-TTGTAAAATTAC
1 TAAAATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTAC
60122616 TAAAATACCCTTTGTTTA
64 TAAAATACCCTTTGTTTA
* * * *
60122634 TAAAATTACCAAAATATCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTACTG
1 TAAAATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTA
60122699 AAATACCCTT
66 AAATACCCTT
60122709 GTGGGGTAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 63 0.95
82 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTA
AAATACCCTTTGTTTA
Found at i:60122660 original size:54 final size:54
Alignment explanation
Indices: 60122550--60122679 Score: 197
Period size: 54 Copynumber: 2.4 Consensus size: 54
60122540 TACCTTCGAC
* *
60122550 TTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGT
1 TTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGT
* * * *
60122604 TTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATATCCATGGT
1 TTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGT
*
60122658 TTGAAAAATTACTAAAATACCC
1 TTGTAAAATTACTAAAATACCC
60122680 CTGTAGGGTA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.32
Consensus pattern (54 bp):
TTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGT
Found at i:60122692 original size:27 final size:27
Alignment explanation
Indices: 60122662--60122723 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60122652 CATGGTTTGA
60122662 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
60122689 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
60122716 AAAATTAC
1 AAAATTAC
60122724 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:60122692 original size:54 final size:54
Alignment explanation
Indices: 60122554--60122706 Score: 148
Period size: 54 Copynumber: 2.8 Consensus size: 54
60122544 TTCGACTTGT
* ** * * *
60122554 AAAATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATAGTTTGA
* ** * *
60122608 AAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATATCCATGGTTTGA
1 AAAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGA
* **
60122662 AAAATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AAAATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
60122707 TTGTGGGGTA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 3 0.04
54 80 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGA
Found at i:60122719 original size:81 final size:81
Alignment explanation
Indices: 60122552--60122725 Score: 210
Period size: 81 Copynumber: 2.1 Consensus size: 81
60122542 CCTTCGACTT
* **
60122552 GTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACT
1 GTAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACT
**
60122617 AAAATACCCTTTGTTT
66 AAAATACCCTTTGTGG
* * * *
60122633 ATAAAATTACCAAAATATCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTA
1 GTAAAATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTAGT-GGGTAAAATTA
*
60122696 CTGAAATACCC-TTGTGGG
64 CTAAAATACCCTTTGT-GG
60122714 GTAAAATTACCA
1 GTAAAATTACCA
60122726 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
80 6 0.08
81 72 0.91
82 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACT
AAAATACCCTTTGTGG
Found at i:60123377 original size:28 final size:27
Alignment explanation
Indices: 60123343--60123427 Score: 143
Period size: 28 Copynumber: 3.1 Consensus size: 27
60123333 AGCGTAGATC
60123343 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
60123370 ACAGAAATTACCCCTAAAGAGCAAAATT
1 AC-GAAATTACCCCTAAAGAGCAAAATT
*
60123398 ATCGAAATTACCCCTAAATAGCAAAATT
1 A-CGAAATTACCCCTAAAGAGCAAAATT
60123426 AC
1 AC
60123428 CAATATACCT
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
27 3 0.05
28 51 0.93
29 1 0.02
ACGTcount: A:0.48, C:0.22, G:0.09, T:0.20
Consensus pattern (27 bp):
ACGAAATTACCCCTAAAGAGCAAAATT
Found at i:60126662 original size:27 final size:27
Alignment explanation
Indices: 60126633--60126802 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
60126623 CCAATTACTG
* *
60126633 AAATACCCTCGATTTGTAAATTTACCG
1 AAATACCCTCGATTTGTAAAATTACCA
* *
60126660 AAATACCTTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCA
* * * *
60126687 AAATACCCTTGGTTTATAAAATCACCA
1 AAATACCCTCGATTTGTAAAATTACCA
* *
60126714 AAATACCC-CTGGTTTGTAAAATTACTA
1 AAATACCCTC-GATTTGTAAAATTACCA
* *
60126741 AAATACCCTTTG-TTTATAAAATTACCA
1 AAATACCC-TCGATTTGTAAAATTACCA
* * * *
60126768 AAATATCCAT-GGTTTGAAAAATTACTA
1 AAATA-CCCTCGATTTGTAAAATTACCA
60126795 AAATACCC
1 AAATACCC
60126803 CTGTAGGGTA
Statistics
Matches: 116, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.03
27 110 0.95
28 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTACCA
Found at i:60126768 original size:81 final size:81
Alignment explanation
Indices: 60126676--60126831 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
60126666 CTTCGACTTG
* **
60126676 TAAAATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTAC
1 TAAAATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTAC
60126739 TAAAATACCCTTTGTTTA
64 TAAAATACCCTTTGTTTA
* * * * *
60126757 TAAAATTACCAAAATATCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTATTG
1 TAAAATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTA
60126822 AAATACCCTT
66 AAATACCCTT
60126832 GTGGGGTAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
80 2 0.03
81 62 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTA
AAATACCCTTTGTTTA
Found at i:60126815 original size:27 final size:27
Alignment explanation
Indices: 60126785--60126846 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
60126775 CATGGTTTGA
60126785 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * * *
60126812 AAAATTATTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
60126839 AAAATTAC
1 AAAATTAC
60126847 CATTTTGCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:60126826 original size:54 final size:54
Alignment explanation
Indices: 60126677--60126818 Score: 153
Period size: 54 Copynumber: 2.6 Consensus size: 54
60126667 TTCGACTTGT
* ** * * *
60126677 AAAATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGA
* ** *
60126731 AAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATATCCATGGTTTGA
1 AAAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGA
*
60126785 AAAATTACTAAAATACCC-CTGTAGGGTAAAATTA
1 AAAATTACTAAAATACCCTCTGT-GGATAAAATTA
60126819 TTGAAATACC
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 73 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGA
Found at i:60126842 original size:81 final size:81
Alignment explanation
Indices: 60126675--60126848 Score: 201
Period size: 81 Copynumber: 2.1 Consensus size: 81
60126665 CCTTCGACTT
* **
60126675 GTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACT
1 GTAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACT
**
60126740 AAAATACCCTTTGTTT
66 AAAATACCCTTTGTGG
* * * *
60126756 ATAAAATTACCAAAATATCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTA
1 GTAAAATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTA
* *
60126819 TTGAAATACCC-TTGTGGG
64 CTAAAATACCCTTTGT-GG
60126837 GTAAAATTACCA
1 GTAAAATTACCA
60126849 TTTTGCCCCT
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
80 6 0.08
81 71 0.91
82 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACT
AAAATACCCTTTGTGG
Found at i:60130075 original size:19 final size:18
Alignment explanation
Indices: 60130038--60130081 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
60130028 ATACATACAG
60130038 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
60130055 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
60130074 TACTAATT
1 TAATAATT
60130082 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:60134346 original size:19 final size:18
Alignment explanation
Indices: 60134309--60134352 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
60134299 ATACATACAG
60134309 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
60134326 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
60134345 TACTAATT
1 TAATAATT
60134353 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Done.