Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 209 of 345
Found at i:60134984 original size:28 final size:28
Alignment explanation
Indices: 60134951--60135035 Score: 152
Period size: 28 Copynumber: 3.0 Consensus size: 28
60134941 GCGTAGATCA
60134951 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60134979 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60135007 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60135035 C
1 C
60135036 AATATACCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:60147368 original size:25 final size:25
Alignment explanation
Indices: 60147337--60147387 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
60147327 AAACAAAAAG
60147337 AAAAACTCAAAACTCCTGAAGGGAA
1 AAAAACTCAAAACTCCTGAAGGGAA
*
60147362 AAAAACTCAAAACTCTTGAAGGGAA
1 AAAAACTCAAAACTCCTGAAGGGAA
60147387 A
1 A
60147388 TTGAGCGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.53, C:0.18, G:0.16, T:0.14
Consensus pattern (25 bp):
AAAAACTCAAAACTCCTGAAGGGAA
Found at i:60149964 original size:40 final size:40
Alignment explanation
Indices: 60149909--60150130 Score: 376
Period size: 40 Copynumber: 5.6 Consensus size: 40
60149899 TATTCGAATG
60149909 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
60149949 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60149989 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
60150029 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
60150069 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
60150109 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
60150131 TACTTGGGTT
Statistics
Matches: 173, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.08
40 157 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:60158566 original size:40 final size:40
Alignment explanation
Indices: 60158511--60158692 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
60158501 TATTCGAATG
* *
60158511 ATATCCGAGCTAAGTCCAGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60158551 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
60158591 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
60158631 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
60158671 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
60158693 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:60188366 original size:46 final size:46
Alignment explanation
Indices: 60188307--60188486 Score: 215
Period size: 46 Copynumber: 3.9 Consensus size: 46
60188297 TAGGATGGTT
60188307 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * * *
60188353 GAGCGTCCAAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
60188398 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
60188445 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60188487 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
42 4 0.04
44 2 0.02
45 9 0.08
46 82 0.73
47 9 0.08
48 2 0.02
50 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:60188466 original size:92 final size:93
Alignment explanation
Indices: 60188309--60188478 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
60188299 GGATGGTTGA
* *
60188309 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
60188374 TGAGT-CGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
60188401 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
60188466 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60188479 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 66 0.90
93 7 0.10
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60194450 original size:7 final size:6
Alignment explanation
Indices: 60194429--60194460 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
60194419 ACCTGAGTCC
60194429 TTTTAT TTTTAT TTTTAT TTTTAT TTATTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT TT-TTAT T
60194461 GAAGACTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:60199855 original size:40 final size:40
Alignment explanation
Indices: 60199835--60199957 Score: 210
Period size: 40 Copynumber: 3.1 Consensus size: 40
60199825 AGCCCGGGTG
*
60199835 TAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
* *
60199875 TAGCAACCAGCACGAATGCCTTCGGGACTTAACCCGAAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
*
60199915 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGATA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
60199955 TAA
1 TAA
60199958 TCCTCAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.16
Consensus pattern (40 bp):
TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
Found at i:60202319 original size:13 final size:13
Alignment explanation
Indices: 60202301--60202333 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
60202291 ACCTGGTATT
*
60202301 CGTTTCGATTCCA
1 CGTTTCGAATCCA
60202314 CGTTTCGAATCCA
1 CGTTTCGAATCCA
60202327 CGTTTCG
1 CGTTTCG
60202334 GTTATTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.30, G:0.18, T:0.36
Consensus pattern (13 bp):
CGTTTCGAATCCA
Found at i:60204635 original size:27 final size:27
Alignment explanation
Indices: 60204605--60204695 Score: 92
Period size: 27 Copynumber: 3.4 Consensus size: 27
60204595 GTCAATCTTG
* *
60204605 TTGGCGTATACCATCTCGCTTGACCTA
1 TTGGCGTATACCATCTTGCCTGACCTA
* * * *
60204632 TTGGCATATACTATCTTGCCTGACTTG
1 TTGGCGTATACCATCTTGCCTGACCTA
* ** *
60204659 TTAGATTATACCATCTTGCCAGACCTA
1 TTGGCGTATACCATCTTGCCTGACCTA
60204686 TTGGCGTATA
1 TTGGCGTATA
60204696 TTAGTTCGCC
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (27 bp):
TTGGCGTATACCATCTTGCCTGACCTA
Found at i:60205175 original size:2 final size:2
Alignment explanation
Indices: 60205168--60205203 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
60205158 GTAATTTCTT
*
60205168 AG AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
60205204 CAAGAAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:60208467 original size:24 final size:25
Alignment explanation
Indices: 60208403--60208470 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 25
60208393 GGTTACGGAT
*
60208403 TTCAGCTCGTATGAGCTTACCAATA
1 TTCAGCTCATATGAGCTTACCAATA
* * * *
60208428 CTCAACTCACATGAGCTTACC-TTA
1 TTCAGCTCATATGAGCTTACCAATA
*
60208452 TTCAGCTCATAGGAGCTTA
1 TTCAGCTCATATGAGCTTA
60208471 TTGTTATTCA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
24 17 0.50
25 17 0.50
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (25 bp):
TTCAGCTCATATGAGCTTACCAATA
Found at i:60208506 original size:24 final size:25
Alignment explanation
Indices: 60208494--60208545 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
60208484 CAGAAGAGAT
60208494 TACCG-TTTACAACTCGTAAGAGCA
1 TACCGATTTACAACTCGTAAGAGCA
* *
60208518 TACCGATTTAGAACTCGTATGAGCA
1 TACCGATTTACAACTCGTAAGAGCA
60208543 TAC
1 TAC
60208546 ATGTACAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
TACCGATTTACAACTCGTAAGAGCA
Found at i:60210674 original size:43 final size:40
Alignment explanation
Indices: 60210531--60210683 Score: 126
Period size: 42 Copynumber: 3.6 Consensus size: 40
60210521 TGAGTTTACG
* ** **
60210531 TGTAAGACCATATCTAAGATATGGCATCGTTATGAGATTTCA
1 TGTAAGACCATATCT-GGGCATGGCATCAATATGAGA-TTCA
* * * * *
60210573 TGGAGGACCATGTCTGGGGCATGGCATCAATATGAGAATCG
1 TGTAAGACCATATCT-GGGCATGGCATCAATATGAGATTCA
* *
60210614 TGTAAGACCATAGCTGGGCTATTTGCATCAATATGAGATTCCA
1 TGTAAGACCATATCTGGGC-A-TGGCATCAATATGAGATT-CA
*
60210657 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGG-CATGGCAT
60210684 TGGCAAATTC
Statistics
Matches: 86, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
40 4 0.05
41 14 0.16
42 49 0.57
43 19 0.22
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (40 bp):
TGTAAGACCATATCTGGGCATGGCATCAATATGAGATTCA
Found at i:60215272 original size:46 final size:46
Alignment explanation
Indices: 60215205--60215377 Score: 215
Period size: 46 Copynumber: 3.7 Consensus size: 46
60215195 AACCCGCCCC
* * *
60215205 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
** * * *
60215251 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
* *
60215297 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
60215344 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60215378 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
45 2 0.02
46 67 0.63
47 35 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:60215322 original size:93 final size:93
Alignment explanation
Indices: 60215210--60215378 Score: 311
Period size: 93 Copynumber: 1.8 Consensus size: 93
60215200 GCCCCTAAGT
* *
60215210 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60215275 CGAGTTCGGATCCCTAGTTACATTTCAC
66 CGAGTTCGGATCCCTAGTTACATTTCAC
*
60215303 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60215368 CGAGTTCGGAT
66 CGAGTTCGGAT
60215379 GCTCAACCAT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATCCCTAGTTACATTTCAC
Found at i:60215832 original size:30 final size:30
Alignment explanation
Indices: 60215798--60215857 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
60215788 ATTTAATATG
60215798 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
60215828 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
60215858 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:60221661 original size:60 final size:60
Alignment explanation
Indices: 60221494--60221665 Score: 165
Period size: 60 Copynumber: 2.9 Consensus size: 60
60221484 TTTTTCTAAT
* * * *
60221494 ATTATATATTTTTA-TTT-TTATAATTCATATTTTAATAATAATTATATTAAGAATGTTATTAA
1 ATTATATATTATTATTTTATTA-AATT-ATA-TTTAATAATAATAATATTAA-AATATGATTAA
* * * *
60221556 ATTATATATTA-T-TTTCATTAAATT-TAATTTCATAATGATAATATTAAATTATGATTAA
1 ATTATATATTATTATTTTATTAAATTAT-ATTTAATAATAATAATATTAAAATATGATTAA
* **
60221614 ATTATTTATTATTATTTTATTAAATTATATTTAATAATAATCCTATTAAAAT
1 ATTATATATTATTATTTTATTAAATTATATTTAATAATAATAATATTAAAAT
60221666 TTAATAACAT
Statistics
Matches: 89, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
58 18 0.20
59 19 0.21
60 31 0.35
61 8 0.09
62 13 0.15
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (60 bp):
ATTATATATTATTATTTTATTAAATTATATTTAATAATAATAATATTAAAATATGATTAA
Found at i:60224360 original size:40 final size:40
Alignment explanation
Indices: 60224273--60224438 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60224263 TGAATGATAC
* * *
60224273 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATA-AT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *
60224311 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *** *
60224351 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
60224391 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
60224431 CC-GGCTAA
1 CCGGGCTAA
60224439 ATTCCGAAGA
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
38 27 0.26
39 9 0.09
40 69 0.66
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:60224411 original size:80 final size:78
Alignment explanation
Indices: 60224273--60224438 Score: 210
Period size: 80 Copynumber: 2.1 Consensus size: 78
60224263 TGAATGATAC
* * *
60224273 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATAATCCGGGCTAAGACCCGAAGGC-ATTCGT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGAAAATCCGGGCTAAGACCCGAAGGCAATT-GT
*
60224337 GCGAGTTGTTATAT
65 GCGAGTGGTTATAT
* * *
60224351 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGA--AAATCCGGGCTAAGACCCGAAGGCAATTG
**
60224416 TGCTTGTGGTTATAT
64 TGCGAGTGGTTATAT
60224431 CC-GGCTAA
1 CCGGGCTAA
60224439 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 30 0.39
79 6 0.08
80 37 0.49
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGAAAATCCGGGCTAAGACCCGAAGGCAATTGTG
CGAGTGGTTATAT
Found at i:60232450 original size:39 final size:40
Alignment explanation
Indices: 60232359--60232523 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
60232349 TGAATGATAC
* * *
60232359 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATA-AT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *
60232397 CCAGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *** *
60232436 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
60232476 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
60232516 CC-GGCTAA
1 CCGGGCTAA
60232524 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
37 7 0.07
38 23 0.22
39 27 0.26
40 46 0.45
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:60232453 original size:77 final size:79
Alignment explanation
Indices: 60232359--60232523 Score: 210
Period size: 77 Copynumber: 2.1 Consensus size: 79
60232349 TGAATGATAC
* * *
60232359 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-TAATCCAGGCTAAGACCCGAAGGC-ATTGT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACAAATCCAGGCTAAGACCCGAAGGCAATTGT
*
60232422 GCGAGTTGTTATAT
66 GCGAGTGGTTATAT
* * * *
60232436 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGA-CAAATCCAGGCTAAGACCCGAAGGCAATTG
**
60232501 TGCTTGTGGTTATAT
65 TGCGAGTGGTTATAT
60232516 CC-GGCTAA
1 CCGGGCTAA
60232524 ATTCCGAAGA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
77 30 0.40
79 27 0.36
80 18 0.24
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACAAATCCAGGCTAAGACCCGAAGGCAATTGT
GCGAGTGGTTATAT
Found at i:60242097 original size:40 final size:40
Alignment explanation
Indices: 60242032--60242149 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
60242022 CGGATGTAAC
* *
60242032 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
60242072 AACCCGCACGAATGCCTTTGGGACTTAACCCGATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
60242112 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
60242150 TTTTTTTCCA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:60244419 original size:124 final size:124
Alignment explanation
Indices: 60244197--60244421 Score: 308
Period size: 124 Copynumber: 1.8 Consensus size: 124
60244187 GAATTATGTG
* * ** * * *
60244197 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * * **
60244262 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCAAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
60244321 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
60244386 GCTAAGTCCCAAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCAAAGACGA-TTATGCTGGAAATTATAT
60244422 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 1 0.01
124 85 0.99
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCAAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:60244543 original size:40 final size:40
Alignment explanation
Indices: 60244416--60244545 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60244406 ATGCTGGAAA
* *
60244416 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
60244456 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
60244496 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60244536 TTATATCCGG
1 TTATATCCGG
60244546 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:60258179 original size:17 final size:17
Alignment explanation
Indices: 60258157--60258190 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
60258147 AACCTAGGCG
60258157 TGTGAG-CCACACGGGCA
1 TGTGAGCCCAC-CGGGCA
60258174 TGTGAGCCCACCGGGCA
1 TGTGAGCCCACCGGGCA
60258191 ATCCATATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.21, C:0.32, G:0.35, T:0.12
Consensus pattern (17 bp):
TGTGAGCCCACCGGGCA
Found at i:60262710 original size:83 final size:83
Alignment explanation
Indices: 60262549--60262719 Score: 261
Period size: 83 Copynumber: 2.1 Consensus size: 83
60262539 GTGTCTCTGC
* *
60262549 CCGTGCGTTTACTACCATGCATTCTGACTTGCAATTTTTACATGCAGGGGACACACGGCCGATCC
1 CCGTGCATTTACTACCATGCATTCTGACTTGCAATTTTTACATGCAGGGGACACACGGCCGAACC
* * *
60262614 ACTCACTCGTGGAACTAA
66 ACACACCCATGGAACTAA
* *
60262632 CCGTGCATTTACTACCATGCATTCTGACTTGCAATTTTTACATGTAGGGGACACACGGTCGAACC
1 CCGTGCATTTACTACCATGCATTCTGACTTGCAATTTTTACATGCAGGGGACACACGGCCGAACC
* *
60262697 ACACGCCCATGGAACTGA
66 ACACACCCATGGAACTAA
60262715 CCGTG
1 CCGTG
60262720 TATCTACCCG
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (83 bp):
CCGTGCATTTACTACCATGCATTCTGACTTGCAATTTTTACATGCAGGGGACACACGGCCGAACC
ACACACCCATGGAACTAA
Found at i:60263693 original size:48 final size:47
Alignment explanation
Indices: 60263622--60263836 Score: 190
Period size: 46 Copynumber: 4.6 Consensus size: 47
60263612 AAACTGACGC
*
60263622 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTG-ATATCACGAGGCCGATG
* * * *
60263670 CATGTCCTAGACATGTCTTACACTAGCTATCG-TCTCA--ATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-T-GATATCACGAGGCCGATG
* * * *
60263716 CATGTCCCAGACATATCTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-GATATCACGAGGCCGATG
* * * * * *
60263764 CATATCCCAAACATGTCTTACAC-AGGC-TCACAT-ACTATGGCTGATG
1 CATGTCCCAGACATGTCTTACACTA-GCTTGATATCACGA-GGCCGATG
*
60263810 CATGTCCCAGACATATCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
60263837 ACACATATCA
Statistics
Matches: 133, Mismatches: 26, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.02
46 67 0.50
47 2 0.02
48 59 0.44
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGATATCACGAGGCCGATG
Found at i:60263751 original size:94 final size:94
Alignment explanation
Indices: 60263622--60263836 Score: 267
Period size: 94 Copynumber: 2.3 Consensus size: 94
60263612 AAACTGACGC
** ** * * *
60263622 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGCCGATGCATGTCCTAGACATGTC
1 CATGTCCCAGACATATCTTACACTAGCTTAAATATCACGAGGCCGATGCATATCCCAAACATGTC
* *
60263687 TTACACTA-GCT-ATCGT-CTCAATGTC-GATG
66 TTACAC-AGGCTCA-CATACT--ATGGCTGATG
* *
60263716 CATGTCCCAGACATATCTTACACTGGCTTAAATATCTCGAGGCCGATGCATATCCCAAACATGTC
1 CATGTCCCAGACATATCTTACACTAGCTTAAATATCACGAGGCCGATGCATATCCCAAACATGTC
60263781 TTACACAGGCTCACATACTATGGCTGATG
66 TTACACAGGCTCACATACTATGGCTGATG
60263810 CATGTCCCAGACATATCTTACACTAGC
1 CATGTCCCAGACATATCTTACACTAGC
60263837 ACACATATCA
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
93 5 0.05
94 97 0.92
95 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (94 bp):
CATGTCCCAGACATATCTTACACTAGCTTAAATATCACGAGGCCGATGCATATCCCAAACATGTC
TTACACAGGCTCACATACTATGGCTGATG
Found at i:60266764 original size:25 final size:24
Alignment explanation
Indices: 60266735--60266802 Score: 79
Period size: 23 Copynumber: 2.8 Consensus size: 24
60266725 TAGCAAAATT
60266735 AAAATTAAAAT-TAAAATATATATAA
1 AAAATTAAAATATAAAA-ATATA-AA
60266760 AAAATTAAAATATAAAAATAT-AA
1 AAAATTAAAATATAAAAATATAAA
*
60266783 AAAA-TAAAAGTATAAGAATA
1 AAAATTAAAA-TATAAAAATA
60266803 AATTAATTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
22 5 0.12
23 15 0.38
25 15 0.38
26 5 0.12
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (24 bp):
AAAATTAAAATATAAAAATATAAA
Found at i:60266772 original size:17 final size:18
Alignment explanation
Indices: 60266741--60266777 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
60266731 AATTAAAATT
60266741 AAAATTAAAATATATATAA
1 AAAATTAAAATATATA-AA
60266760 AAAATTAAAATATA-AAA
1 AAAATTAAAATATATAAA
60266777 A
1 A
60266778 TATAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 1 0.06
19 14 0.78
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATTAAAATATATAAA
Found at i:60266774 original size:15 final size:16
Alignment explanation
Indices: 60266754--60266791 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
60266744 ATTAAAATAT
60266754 ATATAAAAAAT-TAAA
1 ATATAAAAAATATAAA
60266769 ATAT-AAAAATATAAA
1 ATATAAAAAATATAAA
*
60266784 AAATAAAA
1 ATATAAAA
60266792 GTATAAGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 6 0.30
15 11 0.55
16 3 0.15
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
ATATAAAAAATATAAA
Found at i:60266777 original size:8 final size:8
Alignment explanation
Indices: 60266754--60266802 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
60266744 ATTAAAATAT
60266754 ATATAAAA
1 ATATAAAA
*
60266762 A-ATTAAA
1 ATATAAAA
60266769 ATATAAAA
1 ATATAAAA
60266777 ATATAAAA
1 ATATAAAA
60266785 A-ATAAAA
1 ATATAAAA
* *
60266792 GTATAAGA
1 ATATAAAA
60266800 ATA
1 ATA
60266803 AATTAATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
7 12 0.35
8 22 0.65
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (8 bp):
ATATAAAA
Found at i:60266796 original size:15 final size:15
Alignment explanation
Indices: 60266759--60266797 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
60266749 AATATATATA
*
60266759 AAAAAT-TAAAATAT
1 AAAAATATAAAAAAT
60266773 AAAAATATAAAAAAT
1 AAAAATATAAAAAAT
*
60266788 AAAAGTATAA
1 AAAAATATAA
60266798 GAATAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (15 bp):
AAAAATATAAAAAAT
Found at i:60266825 original size:34 final size:30
Alignment explanation
Indices: 60266794--60266866 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 30
60266784 AAATAAAAGT
*
60266794 ATAAGAATAAATTAAT-TAATTAATTAGTAAA
1 ATAAAAATAAA-TAATATAA-TAATTAGTAAA
*
60266825 ATAAAAATAAATAATATAATAATTAATAATA
1 ATAAAAATAAATAATATAATAATTAGTAA-A
60266856 A-ATAAAATAAA
1 ATA-AAAATAAA
60266867 ATAAAATTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
30 14 0.38
31 23 0.62
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (30 bp):
ATAAAAATAAATAATATAATAATTAGTAAA
Found at i:60266844 original size:27 final size:27
Alignment explanation
Indices: 60266810--60266870 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
60266800 ATAAATTAAT
*
60266810 TAAT-TAATTAGTAA-AATAAAAATAAA
1 TAATATAATAAGTAATAATAAAAA-AAA
* *
60266836 TAATATAATAATTAATAATAAATAAAA
1 TAATATAATAAGTAATAATAAAAAAAA
*
60266863 TAAAATAA
1 TAATATAA
60266871 AATTGGGGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 4 0.14
27 18 0.62
28 7 0.24
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (27 bp):
TAATATAATAAGTAATAATAAAAAAAA
Found at i:60266847 original size:8 final size:8
Alignment explanation
Indices: 60266768--60266869 Score: 51
Period size: 8 Copynumber: 13.5 Consensus size: 8
60266758 AAAAAATTAA
*
60266768 AATATAAA
1 AATATAAT
60266776 AATATAA-
1 AATATAAT
*
60266783 AAAATAA-
1 AATATAAT
*
60266790 AAGTATAAG
1 AA-TATAAT
60266799 AATA-AATT
1 AATATAA-T
60266807 AAT-TAATT
1 AATATAA-T
*
60266815 AAT-TAGT
1 AATATAAT
* *
60266822 AAAATAAA
1 AATATAAT
60266830 AATA-AAT
1 AATATAAT
60266837 AATATAAT
1 AATATAAT
60266845 AAT-TAAT
1 AATATAAT
60266852 AATA-AAT
1 AATATAAT
*
60266859 AAAATAA-
1 AATATAAT
60266866 AATA
1 AATA
60266870 AAATTGGGGT
Statistics
Matches: 75, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
7 35 0.47
8 38 0.51
9 2 0.03
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (8 bp):
AATATAAT
Found at i:60266852 original size:15 final size:15
Alignment explanation
Indices: 60266814--60266860 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
60266804 ATTAATTAAT
* *
60266814 TAATTAGTAAAATAA
1 TAATTAATAATATAA
* *
60266829 AAATAAATAATATAA
1 TAATTAATAATATAA
60266844 TAATTAATAATA-AA
1 TAATTAATAATATAA
60266858 TAA
1 TAA
60266861 AATAAAATAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (15 bp):
TAATTAATAATATAA
Found at i:60267186 original size:30 final size:30
Alignment explanation
Indices: 60267152--60267209 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
60267142 ATGTGAGATC
* *
60267152 CCACACGCCCGTATGGCCAGGCCGTGTGAT
1 CCACACACCCATATGGCCAGGCCGTGTGAT
* *
60267182 CCACACACCCATGTGGCCAGGCTGTGTG
1 CCACACACCCATATGGCCAGGCCGTGTG
60267210 CTCCTTTGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.17, C:0.36, G:0.29, T:0.17
Consensus pattern (30 bp):
CCACACACCCATATGGCCAGGCCGTGTGAT
Found at i:60279021 original size:46 final size:46
Alignment explanation
Indices: 60278969--60279099 Score: 181
Period size: 46 Copynumber: 2.8 Consensus size: 46
60278959 GATGTTTGGG
* *
60278969 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
** *
60279015 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * *
60279061 CACCCGAGCTCGTTGACTTGAGTCCAAGTTCACTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60279100 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:60282855 original size:41 final size:40
Alignment explanation
Indices: 60282694--60282863 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 40
60282684 GCTAATCGGG
* *
60282694 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAAT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
60282735 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
60282778 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* * *
60282818 AGTCTAATCCGAGCTTGGTCTCAAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
60282859 G-CTAA
1 GTCTAA
60282864 GAGTCGAACT
Statistics
Matches: 105, Mismatches: 12, Indels: 26
0.73 0.08 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 49 0.47
42 23 0.22
43 8 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:60285689 original size:27 final size:27
Alignment explanation
Indices: 60285660--60285829 Score: 157
Period size: 27 Copynumber: 6.3 Consensus size: 27
60285650 CCAATTACTG
* *
60285660 AAATACCCTCGATTTGTAAATTTACCG
1 AAATACCCTCGATTTGTAAAATTACCA
* *
60285687 AAATACCTTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCA
* * * *
60285714 AAATACCCTTGGTTTATAAAATCACCA
1 AAATACCCTCGATTTGTAAAATTACCA
* *
60285741 AAATACCC-CTGGTTTGTAAAATTACTA
1 AAATACCCTC-GATTTGTAAAATTACCA
* *
60285768 AAATACCCTTTG-TTTATAAAATTACCA
1 AAATACCC-TCGATTTGTAAAATTACCA
* * *
60285795 AAATACCCAT-GGTTTGAAAAATTACTA
1 AAATACCC-TCGATTTGTAAAATTACCA
60285822 AAATACCC
1 AAATACCC
60285830 CTGTAGGGTA
Statistics
Matches: 118, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 116 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTACCA
Found at i:60285795 original size:81 final size:81
Alignment explanation
Indices: 60285703--60285858 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 81
60285693 CTTCGACTTG
* **
60285703 TAAAATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTAC
1 TAAAATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTAC
60285766 TAAAATACCCTTTGTTTA
64 TAAAATACCCTTTGTTTA
* * *
60285784 TAAAATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTACTG
1 TAAAATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTA
60285849 AAATACCCTT
66 AAATACCCTT
60285859 GTGGGGTAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 64 0.96
82 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTA
AAATACCCTTTGTTTA
Found at i:60285842 original size:27 final size:27
Alignment explanation
Indices: 60285812--60285873 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60285802 CATGGTTTGA
60285812 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
60285839 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
60285866 AAAATTAC
1 AAAATTAC
60285874 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:60285842 original size:54 final size:54
Alignment explanation
Indices: 60285704--60285856 Score: 166
Period size: 54 Copynumber: 2.8 Consensus size: 54
60285694 TTCGACTTGT
* ** * * *
60285704 AAAATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGA
* **
60285758 AAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGA
* **
60285812 AAAATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AAAATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
60285857 TTGTGGGGTA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.03
54 83 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGA
Found at i:60285869 original size:81 final size:81
Alignment explanation
Indices: 60285702--60285875 Score: 219
Period size: 81 Copynumber: 2.1 Consensus size: 81
60285692 CCTTCGACTT
* **
60285702 GTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACT
1 GTAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACT
**
60285767 AAAATACCCTTTGTTT
66 AAAATACCCTTTGTGG
* * *
60285783 ATAAAATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTA
1 GTAAAATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTA
*
60285846 CTGAAATACCC-TTGTGGG
64 CTAAAATACCCTTTGT-GG
60285864 GTAAAATTACCA
1 GTAAAATTACCA
60285876 TTTTGCCCCT
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
80 6 0.08
81 73 0.91
82 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACT
AAAATACCCTTTGTGG
Found at i:60286527 original size:28 final size:28
Alignment explanation
Indices: 60286494--60286578 Score: 152
Period size: 28 Copynumber: 3.0 Consensus size: 28
60286484 GCGTAGATCA
60286494 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60286522 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60286550 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60286578 C
1 C
60286579 AATATACCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:60287809 original size:41 final size:43
Alignment explanation
Indices: 60287763--60287871 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
60287753 ACCGGCACGA
* * *
60287763 AGCCTGCTAGACTTTAAGTCTGA-ACTCA-TTCACCGGCATT-T
1 AGCCTGCTAGACTTGAAGCCCGATA-TCATTTCACCGGCATTAT
* *
60287804 CGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTAT
1 AGCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATTAT
* **
60287847 AGCCTGCTAGGCCCGAAGCCCGATA
1 AGCCTGCTAGACTTGAAGCCCGATA
60287872 ATATTATTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
41 21 0.37
42 13 0.23
43 23 0.40
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (43 bp):
AGCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATTAT
Found at i:60287865 original size:43 final size:42
Alignment explanation
Indices: 60287791--60287871 Score: 126
Period size: 43 Copynumber: 1.9 Consensus size: 42
60287781 TCTGAACTCA
* **
60287791 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
60287833 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGATA
60287872 ATATTATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 12 0.34
43 23 0.66
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:60289906 original size:21 final size:21
Alignment explanation
Indices: 60289881--60289923 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
60289871 GTTTAGCGAG
*
60289881 CCTCGCAGACCTTACAATGTA
1 CCTCGCAGACCTCACAATGTA
60289902 CCTCGCAGACCTCACAATGTA
1 CCTCGCAGACCTCACAATGTA
60289923 C
1 C
60289924 TCATAGAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.37, G:0.14, T:0.21
Consensus pattern (21 bp):
CCTCGCAGACCTCACAATGTA
Found at i:60292418 original size:16 final size:17
Alignment explanation
Indices: 60292389--60292420 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
60292379 ATGTAACGTT
60292389 TGTTATTATGTTTTTTG
1 TGTTATTATGTTTTTTG
60292406 TGTTATT-TGTTTTTT
1 TGTTATTATGTTTTTT
60292421 CTGATTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.09, C:0.00, G:0.16, T:0.75
Consensus pattern (17 bp):
TGTTATTATGTTTTTTG
Found at i:60292982 original size:19 final size:19
Alignment explanation
Indices: 60292958--60292997 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
60292948 AAAAATTAAA
*
60292958 TTATTTGAGTTCATTGATT
1 TTATTTAAGTTCATTGATT
* *
60292977 TTATTTAAGTTGATTTATT
1 TTATTTAAGTTCATTGATT
60292996 TT
1 TT
60292998 GTAAAAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.03, G:0.12, T:0.62
Consensus pattern (19 bp):
TTATTTAAGTTCATTGATT
Found at i:60301947 original size:22 final size:21
Alignment explanation
Indices: 60301921--60301963 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
60301911 CTCGTTAACA
60301921 AATATATTCATTGTTTATAGAC
1 AATATATT-ATTGTTTATAGAC
* *
60301943 AATATGTTATTTTTTATAGAC
1 AATATATTATTGTTTATAGAC
60301964 CTCGTTAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.49
Consensus pattern (21 bp):
AATATATTATTGTTTATAGAC
Found at i:60308595 original size:3 final size:3
Alignment explanation
Indices: 60308587--60308644 Score: 109
Period size: 3 Copynumber: 19.7 Consensus size: 3
60308577 AATTTGGATG
60308587 TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
60308634 TTA TTA TTA TT
1 TTA TTA TTA TT
60308645 TTGTATGTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 52 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:60310502 original size:20 final size:20
Alignment explanation
Indices: 60310472--60310516 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
60310462 CTGTTTTGTT
*
60310472 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTATATTGAA
* *
60310491 ATGGGCCCAACTATGTTGAT
1 ATGGGCCCAACTATATTGAA
60310511 ATGGGC
1 ATGGGC
60310517 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTATATTGAA
Found at i:60313160 original size:40 final size:38
Alignment explanation
Indices: 60313111--60313218 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
60313101 ATCACGATTT
*
60313111 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60313151 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60313191 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60313219 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60318462 original size:80 final size:80
Alignment explanation
Indices: 60318378--60318526 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
60318368 TATGGTAACC
* * * *
60318378 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
60318442 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
60318458 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
60318523 CCGG
66 CCGG
60318527 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:60318468 original size:40 final size:38
Alignment explanation
Indices: 60318419--60318526 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
60318409 ATCACGATTT
*
60318419 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60318459 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60318499 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60318527 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60326580 original size:80 final size:80
Alignment explanation
Indices: 60326496--60326644 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
60326486 TATGGTAACC
* * * *
60326496 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
60326560 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
60326576 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
60326641 CCGG
66 CCGG
60326645 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:60326586 original size:40 final size:38
Alignment explanation
Indices: 60326537--60326644 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
60326527 ATCACGATTT
*
60326537 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60326577 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60326617 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60326645 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60339929 original size:29 final size:27
Alignment explanation
Indices: 60339895--60339997 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
60339885 TACTCAATCA
*
60339895 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
60339924 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
60339953 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
60339982 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
60339998 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:60342027 original size:17 final size:17
Alignment explanation
Indices: 60342005--60342039 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
60341995 TTTCAAAACC
60342005 ACTGTTCTGATTTATCT
1 ACTGTTCTGATTTATCT
60342022 ACTGTTCTGATTTATCT
1 ACTGTTCTGATTTATCT
60342039 A
1 A
60342040 AAACCAGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.51
Consensus pattern (17 bp):
ACTGTTCTGATTTATCT
Found at i:60347910 original size:20 final size:20
Alignment explanation
Indices: 60347885--60347947 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
60347875 ATCATTATTC
*
60347885 TTATCCTGAATTTCAGGATT
1 TTATCCTGAATTTCAGAATT
*
60347905 TTATCCTGAATTTCAAAATT
1 TTATCCTGAATTTCAGAATT
*
60347925 TTATCCTGAATTTCAGTATT
1 TTATCCTGAATTTCAGAATT
60347945 TTA
1 TTA
60347948 ATTTAGATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.48
Consensus pattern (20 bp):
TTATCCTGAATTTCAGAATT
Found at i:60353463 original size:16 final size:17
Alignment explanation
Indices: 60353438--60353475 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
60353428 GTTTTGCCCC
60353438 TTTTTGTAGGGTTAGGG
1 TTTTTGTAGGGTTAGGG
60353455 TTTTT-TAGGGTTAGGG
1 TTTTTGTAGGGTTAGGG
60353471 TTTTT
1 TTTTT
60353476 AGTGATTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.11, C:0.00, G:0.34, T:0.55
Consensus pattern (17 bp):
TTTTTGTAGGGTTAGGG
Found at i:60353515 original size:16 final size:16
Alignment explanation
Indices: 60353449--60353515 Score: 66
Period size: 16 Copynumber: 4.1 Consensus size: 16
60353439 TTTTGTAGGG
*
60353449 TTAGGGTTTTTTAG-GG
1 TTAGGG-TTTTTAGTGT
60353465 TTAGGGTTTTTAGTGAT
1 TTAGGGTTTTTAGTG-T
* *
60353482 TTAGAG-TTTTGGTGGT
1 TTAGGGTTTTTAGT-GT
60353498 TTAGGGTTTTTAGTGT
1 TTAGGGTTTTTAGTGT
60353514 TT
1 TT
60353516 TTTAAGGGCA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
15 7 0.17
16 23 0.55
17 12 0.29
ACGTcount: A:0.13, C:0.00, G:0.33, T:0.54
Consensus pattern (16 bp):
TTAGGGTTTTTAGTGT
Found at i:60353630 original size:24 final size:24
Alignment explanation
Indices: 60353603--60353659 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
60353593 AAATTAGGGT
60353603 TTAGGGTTTCTGATTAATTTACGG
1 TTAGGGTTTCTGATTAATTTACGG
*
60353627 TTAGGGTTTCTGATTATTTTACGG
1 TTAGGGTTTCTGATTAATTTACGG
60353651 TTAGGGTTT
1 TTAGGGTTT
60353660 TACTGGTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.18, C:0.07, G:0.26, T:0.49
Consensus pattern (24 bp):
TTAGGGTTTCTGATTAATTTACGG
Found at i:60353673 original size:16 final size:14
Alignment explanation
Indices: 60353643--60353676 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
60353633 TTTCTGATTA
60353643 TTTTACGGTTAGGG
1 TTTTACGGTTAGGG
60353657 TTTTACTGGTGTAGGG
1 TTTTAC-GGT-TAGGG
60353673 TTTT
1 TTTT
60353677 TAGTGTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 3 0.17
16 9 0.50
ACGTcount: A:0.12, C:0.06, G:0.32, T:0.50
Consensus pattern (14 bp):
TTTTACGGTTAGGG
Found at i:60353732 original size:169 final size:160
Alignment explanation
Indices: 60353494--60353941 Score: 546
Period size: 169 Copynumber: 2.7 Consensus size: 160
60353484 AGAGTTTTGG
* *
60353494 TGGTTTAGGGTTTTTAGTGTTTTTTAAGGGCAAAATTAATGAAAACTTAGAGTTGAGGGTTAATT
1 TGGTTTAGGGTTTTTAGTGTTTTTTAAGGGAAAAATTAATG-AAACTTAGAATTGAGGGTTAATT
* *
60353559 AATTAAATTAATTATGACAATAAAAAAATTAATTAAATTAGGGTTTAGGGTTT-CTGATTAAT-T
65 AATTAAATTAATTATGAAAATAAAAAAATTAATTAAATTAGGGTTTAGGGTTTACGGATTAATGT
*
60353622 TACGGTTAGGGTTTCTGATTATTTTACGGTTAGGG-TTTTAC
130 T----TTAGGG-TT-T--TTA--GTA-GGTTAGGGTTTTTAC
* *
60353663 TGGTGTAGGGTTTTTAGTGTTTTTTAAGAGAAAAATTAATGAACACTTAGAATTGAGGGTTAATT
1 TGGTTTAGGGTTTTTAGTGTTTTTTAAGGGAAAAATTAATGAA-ACTTAGAATTGAGGGTTAATT
* * *
60353728 AATTAAATTAATTATGAAAATAAGAAAAAATTAATTAAATTAGGGTTTAGTAGTTTAGGGTTTAA
65 AATTAAATTAATTATGAAAAT-A-AAAAAATTAATTAAATTAGGGTTTAG-GGTTTACGGATTAA
* *
60353793 TGTTTTAGGGTTTTTAGTAGTTTAGGGTTTTTAG
127 TGTTTTAGGGTTTTTAGTAGGTTAGGGTTTTTAC
** ** * *
60353827 TGGTTTAGAATTTTTAGTG-TTTTTAAGGGAAAAATTAATTTAA-TTAGATTTGAGGCTTAATTA
1 TGGTTTAGGGTTTTTAGTGTTTTTTAAGGGAAAAATTAATGAAACTTAGAATTGAGGGTTAATTA
*
60353890 ATTAAATTAACTATGAAAATAAAAAAATTAATTAAATTAGGGTTTAGGGTTT
66 ATTAAATTAATTATGAAAATAAAAAAATTAATTAAATTAGGGTTTAGGGTTT
60353942 TTTAGGGTTT
Statistics
Matches: 250, Mismatches: 22, Indels: 25
0.84 0.07 0.08
Matches are distributed among these distances:
158 4 0.02
159 26 0.10
160 1 0.00
161 37 0.15
162 1 0.00
163 27 0.11
164 23 0.09
166 3 0.01
168 3 0.01
169 80 0.32
170 7 0.03
171 26 0.10
172 4 0.02
173 6 0.02
174 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (160 bp):
TGGTTTAGGGTTTTTAGTGTTTTTTAAGGGAAAAATTAATGAAACTTAGAATTGAGGGTTAATTA
ATTAAATTAATTATGAAAATAAAAAAATTAATTAAATTAGGGTTTAGGGTTTACGGATTAATGTT
TTAGGGTTTTTAGTAGGTTAGGGTTTTTAC
Found at i:60353787 original size:15 final size:15
Alignment explanation
Indices: 60353767--60353822 Score: 69
Period size: 15 Copynumber: 3.6 Consensus size: 15
60353757 ATTAATTAAA
60353767 TTAGGGTTTAGTAGT
1 TTAGGGTTTAGTAGT
*
60353782 TTAGGGTTTAAT-GTT
1 TTAGGGTTTAGTAG-T
60353797 TTAGGGTTTTTAGTAGT
1 TTAGGG--TTTAGTAGT
60353814 TTAGGGTTT
1 TTAGGGTTT
60353823 TTAGTGGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 1 0.03
15 21 0.60
17 12 0.34
18 1 0.03
ACGTcount: A:0.18, C:0.00, G:0.30, T:0.52
Consensus pattern (15 bp):
TTAGGGTTTAGTAGT
Found at i:60353816 original size:17 final size:16
Alignment explanation
Indices: 60353773--60353848 Score: 75
Period size: 17 Copynumber: 4.6 Consensus size: 16
60353763 TAAATTAGGG
60353773 TTTAGTAGTTTAGGG--
1 TTTAGT-GTTTAGGGTT
*
60353788 TTTAATGTTTTAGGGTT
1 TTTAGTG-TTTAGGGTT
60353805 TTTAGTAGTTTAGGGTT
1 TTTAGT-GTTTAGGGTT
**
60353822 TTTAGTGGTTTAGAATT
1 TTTAGT-GTTTAGGGTT
60353839 TTTAGTGTTT
1 TTTAGTGTTT
60353849 TTAAGGGAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
14 1 0.02
15 12 0.23
16 4 0.08
17 34 0.65
18 1 0.02
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.55
Consensus pattern (16 bp):
TTTAGTGTTTAGGGTT
Found at i:60354236 original size:126 final size:126
Alignment explanation
Indices: 60353971--60354283 Score: 475
Period size: 127 Copynumber: 2.5 Consensus size: 126
60353961 ATTAACTATT
* *
60353971 AATTAC-GAAATAAAGCTCCCACGTGGACTCTCTTTTGCTACAGTAGTATTTGAAAAAATAAATT
1 AATTACGGAAA-AAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAAATT
* * * *
60354035 TGAGAAGATGTTTCTGAACAAATAGTGTAAAAAACTCTTCAAGAAGGATGCACTGTCAGCAA
65 TGAAAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTTTCAGCAA
* * *
60354097 AATAACGGAAAAAAGCTCCCACGTAGACGCTCTTTTGCTACAGTAGTATTTGAAAAAATAAATTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAAATTT
*
60354162 GAAAAGATGTTTCTGAACAAATAGTGTCAAAAAACGCTTCAAGAAGGATGCACTTTTAGCAA
66 GAAAAGATGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGAAGGATGCACTTTCAGCAA
* * * *
60354224 AATTACGGAAAAAAGCTCCCACGTGGAAGCTCTTTTGCTGCAGTGGTATCTGATAAAATA
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATA
60354284 TTGCTGTAGT
Statistics
Matches: 170, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
126 83 0.49
127 87 0.51
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAAATTT
GAAAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTTTCAGCAA
Found at i:60354294 original size:26 final size:26
Alignment explanation
Indices: 60354258--60354309 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
60354248 GGAAGCTCTT
60354258 TTGCTGCAGTGGTATCTGATAAAATA
1 TTGCTGCAGTGGTATCTGATAAAATA
*
60354284 TTGCTGTAGTGGTATCTGATAAAATA
1 TTGCTGCAGTGGTATCTGATAAAATA
60354310 ATTTTGAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.37
Consensus pattern (26 bp):
TTGCTGCAGTGGTATCTGATAAAATA
Found at i:60354410 original size:152 final size:153
Alignment explanation
Indices: 60354142--60354435 Score: 482
Period size: 152 Copynumber: 1.9 Consensus size: 153
60354132 TGCTACAGTA
* *
60354142 GTATTTGAAAAAATAAATTTGAAAAGATGTTTCTGAACAAATAGTGTCAAAAAACGCTTCAAGAA
1 GTATCTGAAAAAATAAATTTGAAAAGATATTTCTGAACAAATAGTGTCAAAAAACGCTTCAAGAA
* *
60354207 GGATGCACTTTTAGCAAAATTACGGAAAAAAGCTCCCACGTGGAAGCTCTTTTGCTGCAGTGGTA
66 GGATGCACTTTCAGCAAAATTACGGAAAAAAGCTCCCACGTGGAAGCTCTTTTGCTACAGTGGTA
60354272 TCTGATAAAATATTGCTGTAGTG
131 TCTGATAAAATATTGCTGTAGTG
* * * *
60354295 GTATCTGATAAAATAATTTTGAGAAGCTATTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGAA
1 GTATCTGAAAAAATAAATTTGAAAAGATATTTCTGAACAAATAGTGTCAAAAAACGCTTCAAGAA
* * *
60354359 GGATGCACTTTCAGCAAAATTACGGAAAAAGGCTCCCACGTGGACGTTCTTTTGCTACAGTGGTA
66 GGATGCACTTTCAGCAAAATTACGGAAAAAAGCTCCCACGTGGAAGCTCTTTTGCTACAGTGGTA
60354424 TCTGATAAAATA
131 TCTGATAAAATA
60354436 ATTTTGAGAA
Statistics
Matches: 130, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
152 88 0.68
153 42 0.32
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (153 bp):
GTATCTGAAAAAATAAATTTGAAAAGATATTTCTGAACAAATAGTGTCAAAAAACGCTTCAAGAA
GGATGCACTTTCAGCAAAATTACGGAAAAAAGCTCCCACGTGGAAGCTCTTTTGCTACAGTGGTA
TCTGATAAAATATTGCTGTAGTG
Found at i:60354509 original size:126 final size:125
Alignment explanation
Indices: 60354291--60354684 Score: 610
Period size: 126 Copynumber: 3.1 Consensus size: 125
60354281 ATATTGCTGT
* *
60354291 AGTGGTATCTGATAAAATAATTTTGAGAAGCTATTTCTGAACAAATAGTGTCAAAAACGCTTCAA
1 AGTGGTATCTGATAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAA
* *
60354356 GAAGGATGCACTTTCAGCAAAATTACGGAAAAAGGCTCCCACGTGGACGTTCTTTTGCTAC
66 GAAGGATGCACTTTCAGCAAAATTACGGAAAAA-ACTCCCACGTGGACGCTCTTTTGCTAC
* *
60354417 AGTGGTATCTGATAAAATAATTTTGAGAAGATGTTTCTTAACAAATAGTGTCAATAACGCTTCAA
1 AGTGGTATCTGATAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAA
* * * *
60354482 AAAGGATGTACTTTTAGCAAAATTACGGAAATAAACTCTCACGTGGACGCTCTTTTGCTAC
66 GAAGGATGCACTTTCAGCAAAATTACGGAAA-AAACTCCCACGTGGACGCTCTTTTGCTAC
* *
60354543 AGTGGTATCTGATAATATAATTTTGAGAAAATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAA
1 AGTGGTATCTGATAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAA
* *
60354608 GAAGGATGCACTTTCAGCAAAATTACGGAAAAAATCTCCCACGTGGACGCTATGTTGCTAC
66 GAAGGATGCACTTTCAGCAAAATTACGGAAAAAA-CTCCCACGTGGACGCTCTTTTGCTAC
**
60354669 AGTAATATCTGA-AAAA
1 AGTGGTATCTGATAAAA
60354685 GCCTTAGACT
Statistics
Matches: 243, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
125 6 0.02
126 235 0.97
127 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (125 bp):
AGTGGTATCTGATAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAA
GAAGGATGCACTTTCAGCAAAATTACGGAAAAAACTCCCACGTGGACGCTCTTTTGCTAC
Found at i:60359184 original size:40 final size:40
Alignment explanation
Indices: 60359128--60359368 Score: 308
Period size: 40 Copynumber: 6.0 Consensus size: 40
60359118 AATGATACCA
* * ** *
60359128 GGGCTAAGTCCTGAAGGCATTTATGCTAG-TGATTATATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCC
*
60359168 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATACCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
* ** * *
60359208 GGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCT
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCC
60359248 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
60359288 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
** *
60359328 GGGCTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCC
60359368 G
1 G
60359369 ACTAAATTCC
Statistics
Matches: 177, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 168 0.95
41 7 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCC
Found at i:60359255 original size:80 final size:80
Alignment explanation
Indices: 60359122--60359346 Score: 362
Period size: 80 Copynumber: 2.8 Consensus size: 80
60359112 CATTTGAATG
* *
60359122 ATACCAGGGCTAAGTCCTGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
60359187 TTCGTGCGAGTTGTT
66 TTCGTGCGAGTTGTT
*
60359202 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCTGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
60359267 TTCGTGCGAGTTGTT
66 TTCGTGCGAGTTGTT
* * ** *
60359282 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
60359346 A
65 A
60359347 ATTGTGCTTG
Statistics
Matches: 135, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
80 133 0.99
81 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGTT
Found at i:60359341 original size:120 final size:120
Alignment explanation
Indices: 60359128--60359366 Score: 363
Period size: 120 Copynumber: 2.0 Consensus size: 120
60359118 AATGATACCA
* * * *
60359128 GGGCTAAGTCCTGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGTG
1 GGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGTG
* *
60359193 CGAGTTGTTATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCT
66 CGAGTTGTTATACCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATATCT
*
60359248 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTCGT
* * * *
60359312 GCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
65 GCGAGTTGTTATACCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATATC
60359367 CGACTAAATT
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
120 105 0.98
121 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
GGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGTG
CGAGTTGTTATACCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATATCT
Found at i:60362592 original size:45 final size:44
Alignment explanation
Indices: 60362543--60362712 Score: 136
Period size: 45 Copynumber: 3.9 Consensus size: 44
60362533 AGGATTTTTG
** *
60362543 ATATGTGTTCTCATGTAAGACCAAATTTGGGACATTGGCATCGAT
1 ATATGTGTT-TCATGTAAGACCATGTCTGGGACATTGGCATCGAT
* *
60362588 ATATGTGGTTATC-TGTAATACCATGTCTGGGACATCGGCATC-AT
1 ATATGT-GTT-TCATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * *
60362632 AT-T-AGATTCATGTAAGACCTTGTCTGGGACAGTGGCATCGAT
1 ATATGTGTTTCATGTAAGACCATGTCTGGGACATTGGCATCGAT
* ** * *
60362674 ATGA-G-ATAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 AT-ATGTGTTTCATGTAAGACCATGTCTGGGACATTGGCAT
60362713 TGTTTGATAT
Statistics
Matches: 99, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
40 2 0.02
41 27 0.27
42 4 0.04
43 27 0.27
44 4 0.04
45 30 0.30
46 5 0.05
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
ATATGTGTTTCATGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:60362658 original size:41 final size:43
Alignment explanation
Indices: 60362601--60362712 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
60362591 TGTGGTTATC
* * *
60362601 TGTAATACCATGTCTGGGACA-TCGGCATC-ATATTAGAT-TCA
1 TGTAAGACCATGTCTGGGACAGT-GGCATCGATATGAGATAGCA
*
60362642 TGTAAGACCTTGTCTGGGACAGTGGCATCGATATGAGATAGCA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATGAGATAGCA
*
60362685 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCATGTCTGGGACAG-TGGCAT
60362713 TGTTTGATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
41 25 0.41
42 10 0.16
43 26 0.43
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATGAGATAGCA
Found at i:60367663 original size:34 final size:33
Alignment explanation
Indices: 60367568--60367664 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 33
60367558 GTATGCATTT
60367568 CTGATACTGTACTGAATTGGGCTAAGGCCCACA
1 CTGATACTGTACTGAATTGGGCTAAGGCCCACA
*
60367601 CTGATACTGCTACT-TATTGGGCTAAGGCCCACA
1 CTGATACTG-TACTGAATTGGGCTAAGGCCCACA
* * *
60367634 CTGATATTGTGACTGAAATGGGCTTAGGCCC
1 CTGATACTGT-ACTGAATTGGGCTAAGGCCC
60367665 GGACTATTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 1 0.02
33 38 0.68
34 17 0.30
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (33 bp):
CTGATACTGTACTGAATTGGGCTAAGGCCCACA
Found at i:60373082 original size:40 final size:40
Alignment explanation
Indices: 60372955--60373084 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60372945 ATGCTGGAAA
* *
60372955 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
60372995 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
60373035 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60373075 TTATATCCGG
1 TTATATCCGG
60373085 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:60373083 original size:80 final size:80
Alignment explanation
Indices: 60372917--60373084 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
60372907 CAATTGAATG
* * *
60372917 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
60372982 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
60372997 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
60373061 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
60373077 ATATCCGG
1 ATATCCGG
60373085 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:60381009 original size:124 final size:124
Alignment explanation
Indices: 60380787--60381011 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
60380777 GAATTATGTG
* * * ** * * *
60380787 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
60380852 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
60380911 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
60380976 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
60381012 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:60381133 original size:40 final size:40
Alignment explanation
Indices: 60381006--60381135 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60380996 ATGCTGGAAA
* *
60381006 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
60381046 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
60381086 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60381126 TTATATCCGG
1 TTATATCCGG
60381136 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:60381134 original size:80 final size:80
Alignment explanation
Indices: 60380968--60381135 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
60380958 CAATTGAATG
* * *
60380968 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
60381033 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
60381048 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
60381112 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
60381128 ATATCCGG
1 ATATCCGG
60381136 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:60385466 original size:43 final size:42
Alignment explanation
Indices: 60385419--60385517 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
60385409 TCCCAAACGT
* **
60385419 GGTCTTACATGTAATCAAATATCGATGCCTCTATCCCAGACAG
1 GGTCTTACATGTAATCAAATA-AGATGCCGATATCCCAGACAG
* * * * *
60385462 GGTCTTATACGAAATCAAATAAGATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATAAGATGCCGATATCCCAGACAG
60385504 GGTCTTACATGTAA
1 GGTCTTACATGTAA
60385518 ATCTCAAATC
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 27 0.60
43 18 0.40
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATAAGATGCCGATATCCCAGACAG
Found at i:60385520 original size:43 final size:42
Alignment explanation
Indices: 60385395--60385564 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 42
60385385 CAGAAAGCTC
* * * * * *
60385395 ATACAATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
** * * *
60385437 ATATCGATGCCTCTATCCCAGACAGGGTCTTATACGAAATCAA
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
* * *
60385480 ATAAGATGCCGATGTCCCAGACATGGTCTTACATGTAAATCTCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAA
* *
60385525 AT-CGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
60385565 CATATCGGAA
Statistics
Matches: 101, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
41 3 0.03
42 28 0.28
43 37 0.37
44 27 0.27
45 6 0.06
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:60385560 original size:86 final size:85
Alignment explanation
Indices: 60385408--60385564 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
60385398 CAATGCCAAC
* * *
60385408 GTCCCAAACGTGGTCTTACATGTAATCAAATATCGATGCCTCTATCCCAGACAGGGTCTTATACG
1 GTCCCAAACATGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGGGTCTTACACG
60385473 AAATCAAATAAGATGCCGAT
66 AAATCAAATAAGATGCCGAT
* * *
60385493 GTCCCAGACATGGTCTTACATGTAAATCTCAA-ATCGATGCCAAC-GTCCCAGAC-GTGGTCTTA
1 GTCCCAAACATGGTCTTACATGT-AATC-AAATATCGATGCC-ACTATCCCAGACAG-GGTCTTA
60385555 CACGAAATCA
62 CACGAAATCA
60385565 CATATCGGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
85 22 0.35
86 37 0.60
87 3 0.05
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (85 bp):
GTCCCAAACATGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGGGTCTTACACG
AAATCAAATAAGATGCCGAT
Found at i:60385665 original size:52 final size:52
Alignment explanation
Indices: 60385587--60385694 Score: 207
Period size: 52 Copynumber: 2.1 Consensus size: 52
60385577 CTATGTCATG
*
60385587 ACATATGTATCCTAACATACCTATGGTTCGTATGGGGCTTTCGGACGTCTTC
1 ACATATGTATCCTAACATACCTATGGTTCATATGGGGCTTTCGGACGTCTTC
60385639 ACATATGTATCCTAACATACCTATGGTTCATATGGGGCTTTCGGACGTCTTC
1 ACATATGTATCCTAACATACCTATGGTTCATATGGGGCTTTCGGACGTCTTC
60385691 ACAT
1 ACAT
60385695 TATCGAAACT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (52 bp):
ACATATGTATCCTAACATACCTATGGTTCATATGGGGCTTTCGGACGTCTTC
Found at i:60393950 original size:13 final size:13
Alignment explanation
Indices: 60393932--60393961 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
60393922 TAATGTTGTG
60393932 GCAGATGCACTGA
1 GCAGATGCACTGA
60393945 GCAGATGCACTGA
1 GCAGATGCACTGA
60393958 GCAG
1 GCAG
60393962 GAAATCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.23, G:0.33, T:0.13
Consensus pattern (13 bp):
GCAGATGCACTGA
Found at i:60398193 original size:29 final size:29
Alignment explanation
Indices: 60398159--60398290 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 29
60398149 TAATCGATCA
*
60398159 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
60398188 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
60398217 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
60398246 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
60398275 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60398291 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 81 0.91
31 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:60405415 original size:29 final size:29
Alignment explanation
Indices: 60405381--60405512 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 29
60405371 TAATCGATCA
*
60405381 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
60405410 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
60405439 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
60405468 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
60405497 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60405513 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 81 0.91
31 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:60410385 original size:33 final size:33
Alignment explanation
Indices: 60410347--60410450 Score: 120
Period size: 33 Copynumber: 3.2 Consensus size: 33
60410337 TACCCAAATG
* *
60410347 GTACAATTTGAAAAGGTTAGGTATACTTTGTGT
1 GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
* ** * *
60410380 ATACAACTTGAAAAGGAAAGGTACACTATATGT
1 GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
* *
60410413 GTAC-ACTTGAAAAGGTTATGTGCACTTTGTGT
1 GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
60410445 GTACAA
1 GTACAA
60410451 ATTGGAAGGG
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
32 26 0.46
33 30 0.54
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (33 bp):
GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
Found at i:60410446 original size:32 final size:32
Alignment explanation
Indices: 60410354--60410449 Score: 111
Period size: 32 Copynumber: 3.0 Consensus size: 32
60410344 ATGGTACAAT
* *
60410354 TTGAAAAGGTTAGGTATACTTTGTGTATACAAC
1 TTGAAAAGGTTAGGTACACTTTGTGTGTAC-AC
** * *
60410387 TTGAAAAGGAAAGGTACACTATATGTGTACAC
1 TTGAAAAGGTTAGGTACACTTTGTGTGTACAC
* *
60410419 TTGAAAAGGTTATGTGCACTTTGTGTGTACA
1 TTGAAAAGGTTAGGTACACTTTGTGTGTACA
60410450 AATTGGAAGG
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
32 27 0.53
33 24 0.47
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (32 bp):
TTGAAAAGGTTAGGTACACTTTGTGTGTACAC
Found at i:60413332 original size:7 final size:7
Alignment explanation
Indices: 60413320--60413358 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
60413310 TGACTAAAGT
60413320 TTTTTTA
1 TTTTTTA
*
60413327 TTTTTTC
1 TTTTTTA
*
60413334 TCTTTTA
1 TTTTTTA
60413341 TTTTTTA
1 TTTTTTA
60413348 -TTTTTA
1 TTTTTTA
60413354 TTTTT
1 TTTTT
60413359 CGGCTTTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTA
Found at i:60413373 original size:27 final size:27
Alignment explanation
Indices: 60413321--60413373 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
60413311 GACTAAAGTT
* *
60413321 TTTTTATTTTTTCTCTTTTATTTTTTA
1 TTTTTATTTTTTCGCTTTTATATTTTA
*
60413348 TTTTTA-TTTTTCGGCTTTTCTATTTT
1 TTTTTATTTTTTC-GCTTTTATATTTT
60413374 CACGTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.77
Consensus pattern (27 bp):
TTTTTATTTTTTCGCTTTTATATTTTA
Found at i:60413391 original size:73 final size:74
Alignment explanation
Indices: 60413304--60413449 Score: 240
Period size: 74 Copynumber: 2.0 Consensus size: 74
60413294 TAAATTATTA
* * *
60413304 GTTTAATGACTAAAGTTTTTTTATTTTTTCTCTTTTA-TTTTTTATTTTTATTTTTCGGCTTTTC
1 GTTTAATGACTAAAGCTGTCTTATTTTTTCTCTTTTACTTTTTTATTTTTATTTTTCGGCTTTTC
60413368 TATTTTCAC
66 TATTTTCAC
* *
60413377 GTTTTATGACTAAAGCTGTCTTATTTTTTCTCTTTTACTTTTTTATTTTTATTTTTTGGCTTTTC
1 GTTTAATGACTAAAGCTGTCTTATTTTTTCTCTTTTACTTTTTTATTTTTATTTTTCGGCTTTTC
60413442 TATTTTCA
66 TATTTTCA
60413450 TGTTCTCCTC
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
73 33 0.49
74 34 0.51
ACGTcount: A:0.16, C:0.12, G:0.08, T:0.65
Consensus pattern (74 bp):
GTTTAATGACTAAAGCTGTCTTATTTTTTCTCTTTTACTTTTTTATTTTTATTTTTCGGCTTTTC
TATTTTCAC
Found at i:60419956 original size:25 final size:25
Alignment explanation
Indices: 60419903--60419964 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
60419893 CGAGTCCATT
* *
60419903 AGGCTTCATGCCAGTGTATATTATT
1 AGGCTTCAAGCCAGTGTATATTATC
*
60419928 AGGCTTCAAGCCGGTGTAT-TGTATC
1 AGGCTTCAAGCCAGTGTATAT-TATC
60419953 AGGCCTT-AAGCC
1 AGG-CTTCAAGCC
60419965 TGACGGGCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 1 0.03
25 28 0.88
26 3 0.09
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (25 bp):
AGGCTTCAAGCCAGTGTATATTATC
Found at i:60419986 original size:41 final size:41
Alignment explanation
Indices: 60419929--60420006 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
60419919 TATATTATTA
*
60419929 GGCTTCAAGCCGGTGTATTGTATCAGGCCTTAAGCCTGACG
1 GGCTTCAAGCCGGTGTATTGTATCAGGCCCTAAGCCTGACG
* *
60419970 GGCTTCAAGTCGGTGTATTGTATTAGGCCCTAAGCCT
1 GGCTTCAAGCCGGTGTATTGTATCAGGCCCTAAGCCT
60420007 AGCAAGCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
GGCTTCAAGCCGGTGTATTGTATCAGGCCCTAAGCCTGACG
Found at i:60431264 original size:75 final size:75
Alignment explanation
Indices: 60431135--60431285 Score: 284
Period size: 75 Copynumber: 2.0 Consensus size: 75
60431125 TCGGGGATCA
* *
60431135 AGGGACGTCGGAGGTTCGTTCACACTATTGATTGGATCTTTTGGGTATATTTTGTCTCAACATTT
1 AGGGACGTCGGAGGTTCGTTCACACTATTGATTGGATCTTTTGGGTAGAGTTTGTCTCAACATTT
60431200 TGAATATGGC
66 TGAATATGGC
60431210 AGGGACGTCGGAGGTTCGTTCACACTATTGATTGGATCTTTTGGGTAGAGTTTGTCTCAACATTT
1 AGGGACGTCGGAGGTTCGTTCACACTATTGATTGGATCTTTTGGGTAGAGTTTGTCTCAACATTT
60431275 TGAATATGGC
66 TGAATATGGC
60431285 A
1 A
60431286 TGTATAGGGA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (75 bp):
AGGGACGTCGGAGGTTCGTTCACACTATTGATTGGATCTTTTGGGTAGAGTTTGTCTCAACATTT
TGAATATGGC
Found at i:60432363 original size:28 final size:28
Alignment explanation
Indices: 60432323--60432379 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
60432313 CCTTATACCC
* *
60432323 TATTTTGGTGTCGAATACAAGTAAGGGG
1 TATTTCGGGGTCGAATACAAGTAAGGGG
**
60432351 TATTTCGGGGTCGAATACGGGTAAGGGG
1 TATTTCGGGGTCGAATACAAGTAAGGGG
60432379 T
1 T
60432380 GTTACATCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.09, G:0.37, T:0.30
Consensus pattern (28 bp):
TATTTCGGGGTCGAATACAAGTAAGGGG
Found at i:60435377 original size:27 final size:27
Alignment explanation
Indices: 60435339--60435393 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
60435329 ATCTAGCATC
60435339 GATGACAGGTTATGAGGTGTTACAGGG
1 GATGACAGGTTATGAGGTGTTACAGGG
60435366 GATGACAGGTTATGAGGTGTTACAGGG
1 GATGACAGGTTATGAGGTGTTACAGGG
60435393 G
1 G
60435394 TAACCGTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.42, T:0.25
Consensus pattern (27 bp):
GATGACAGGTTATGAGGTGTTACAGGG
Found at i:60437146 original size:13 final size:13
Alignment explanation
Indices: 60437128--60437152 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60437118 TTCTCATGTA
60437128 AAAAAAAAAGAAT
1 AAAAAAAAAGAAT
60437141 AAAAAAAAAGAA
1 AAAAAAAAAGAA
60437153 GAGGCAGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.08, T:0.04
Consensus pattern (13 bp):
AAAAAAAAAGAAT
Found at i:60437567 original size:19 final size:19
Alignment explanation
Indices: 60437543--60437580 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60437533 CAACTGCCAC
60437543 CCACCATAATCAAATTTGT
1 CCACCATAATCAAATTTGT
60437562 CCACCATAATCAAATTTGT
1 CCACCATAATCAAATTTGT
60437581 TATTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (19 bp):
CCACCATAATCAAATTTGT
Found at i:60439537 original size:40 final size:40
Alignment explanation
Indices: 60439478--60439695 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
60439468 TGGATGATAA
* * * *
60439478 CCGGGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
60439518 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
60439558 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
60439598 CCGGGCTAAGTCCCGATGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
60439638 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
60439678 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
60439696 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:60447596 original size:71 final size:71
Alignment explanation
Indices: 60447512--60447675 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
60447502 CGATTTGTCT
60447512 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
60447577 CTTTCA
66 CTTTCA
*
60447583 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
60447648 CTTTCA
66 CTTTCA
60447654 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
60447676 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:60447713 original size:71 final size:70
Alignment explanation
Indices: 60447512--60447709 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
60447502 CGATTTGTCT
* * * * *
60447512 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGTGACCTAGCTACATTTAT
60447577 CTTTCA
65 CTTTCA
* * * *
60447583 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGTGACCTAGCTACATTTAT
60447648 CTTTCA
65 CTTTCA
*
60447654 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGTGACCTAGCTAC
60447710 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGTGACCTAGCTACATTTATC
TTTCA
Found at i:60450163 original size:55 final size:55
Alignment explanation
Indices: 60450093--60450208 Score: 214
Period size: 55 Copynumber: 2.1 Consensus size: 55
60450083 TGGGAAGAAG
*
60450093 TAAATTTTTTTAGGGGGAGTAGAATTATTACAGTACATTTACATGTAAATCAGGAA
1 TAAA-TTTTTTAGGGGGAGTAGAATTATTACAGTACATTTACATGTAAAACAGGAA
60450149 TAAATTTTTTAGGGGGAGTAGAATTATTACAGTACATTTACATGTAAAACAGGAA
1 TAAATTTTTTAGGGGGAGTAGAATTATTACAGTACATTTACATGTAAAACAGGAA
60450204 TAAAT
1 TAAAT
60450209 ACAATACTAT
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
55 55 0.93
56 4 0.07
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (55 bp):
TAAATTTTTTAGGGGGAGTAGAATTATTACAGTACATTTACATGTAAAACAGGAA
Found at i:60458874 original size:14 final size:14
Alignment explanation
Indices: 60458855--60458884 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
60458845 GAAAAGTGCT
60458855 CTTCACTTAGATTC
1 CTTCACTTAGATTC
60458869 CTTCACTTAGATTC
1 CTTCACTTAGATTC
60458883 CT
1 CT
60458885 CAATTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.43
Consensus pattern (14 bp):
CTTCACTTAGATTC
Found at i:60459473 original size:15 final size:14
Alignment explanation
Indices: 60459425--60459493 Score: 68
Period size: 14 Copynumber: 4.8 Consensus size: 14
60459415 TAAAGATAAC
*
60459425 AAGAAATCCAAATA
1 AAGAAACCCAAATA
*
60459439 AAGAAATCCAAGATA
1 AAGAAACCCAA-ATA
*
60459454 GAGAAACCCAGAATA
1 AAGAAACCCA-AATA
*
60459469 AAGAAA-CCAGAGTA
1 AAGAAACCCA-AATA
60459483 AAGAAACCCAA
1 AAGAAACCCAA
60459494 GATACAATAC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
14 25 0.52
15 22 0.46
16 1 0.02
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (14 bp):
AAGAAACCCAAATA
Found at i:60459487 original size:29 final size:29
Alignment explanation
Indices: 60459425--60459493 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
60459415 TAAAGATAAC
*
60459425 AAGAAATCCAAATAAAGAAATCCAAGATA
1 AAGAAACCCAAATAAAGAAATCCAAGATA
*
60459454 GAGAAACCCAGAATAAAGAAA-CC-AGAGTA
1 AAGAAACCCA-AATAAAGAAATCCAAGA-TA
60459483 AAGAAACCCAA
1 AAGAAACCCAA
60459494 GATACAATAC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 4 0.11
29 21 0.60
30 10 0.29
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (29 bp):
AAGAAACCCAAATAAAGAAATCCAAGATA
Found at i:60462648 original size:50 final size:49
Alignment explanation
Indices: 60462483--60462659 Score: 234
Period size: 49 Copynumber: 3.6 Consensus size: 49
60462473 CTGGTACGCA
* * * **
60462483 TAGTAGCCTGCACATAGTACT--ACATGCGACCAATTATCC-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGA-TACACG
** *
60462530 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
60462579 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
60462629 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
60462660 TCACAGTTTT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
47 20 0.17
49 55 0.47
50 43 0.36
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:60462650 original size:99 final size:100
Alignment explanation
Indices: 60462524--60462704 Score: 294
Period size: 99 Copynumber: 1.8 Consensus size: 100
60462514 AATTATCCAG
*
60462524 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACGTAGTAGCC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAG-AGCC
60462587 TGCACTTAGTACTACACACGTGACCTAACCATCTGA
65 TGCACTTAGTACTACACACGTGACCTAACCATCTGA
* * * *
60462623 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGAGCCT
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAGAGCCT
60462688 GCACTTAGTACTACACA
66 GCACTTAGTACTACACA
60462705 TGCGACCTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
99 37 0.49
100 23 0.31
101 15 0.20
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAGAGCCT
GCACTTAGTACTACACACGTGACCTAACCATCTGA
Found at i:60462687 original size:50 final size:49
Alignment explanation
Indices: 60462483--60462704 Score: 279
Period size: 50 Copynumber: 4.5 Consensus size: 49
60462473 CTGGTACGCA
* * * *
60462483 TAGTAGCCTGCACATAGTACT--ACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
60462530 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
60462579 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
60462629 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
60462680 TAG-AGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
60462705 TGCGACCTCA
Statistics
Matches: 154, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
47 20 0.13
49 56 0.36
50 65 0.42
51 12 0.08
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:60467010 original size:46 final size:45
Alignment explanation
Indices: 60466931--60467097 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 45
60466921 CGAGGCCAAT
* * *
60466931 GCATATCCCAGACATGTCTTACTCTGGAACTCATAATATGGCTGAA
1 GCATGTCCCAGACATGTCTTACACTGGCACTCATAATATGGC-GAA
* * * * * *
60466977 GCATGTCCTAGACATGTCTTACACTAGCCCTCAT-CTGGATGTCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCACTCATAAT--ATGGCGAA
* * *
60467023 GCCATGTCCCAGACATGGCCTTACACTGGCTCTCATAATGTGGCCGAA
1 G-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATATGG-CGAA
*
60467071 GCATGTCTCAGACATGTCTTACACTGG
1 GCATGTCCCAGACATGTCTTACACTGG
60467098 TGCACAAATC
Statistics
Matches: 96, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 42 0.44
47 32 0.33
48 20 0.21
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTGGCACTCATAATATGGCGAA
Found at i:60474609 original size:47 final size:47
Alignment explanation
Indices: 60474326--60474631 Score: 204
Period size: 47 Copynumber: 6.6 Consensus size: 47
60474316 TTGTAGATGC
* * * *
60474326 CATGTCCCAGACATGGTCTTACACTTGCTCTCATATATGCGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATA-ATGTGAGCTGAAG
* * * * * * *
60474375 CATGTCCCAAACATGTCTTACACTAG--CACA-ACTCTTAGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGAGCTGAAG
* ** * *
60474419 CGTGTCCCAGACACATCTTACACTGGCTATC-T-CTGTCGAGGCT-AATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGT-GA-GCTGAA-G
* * * * *
60474466 CATATCCCAGACATGTCTTACTCTGGCACTCATAATATG-GTTGAAG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGAGCTGAAG
* * * *
60474512 CATGTCCC-GACATGTCTTACACTAGC-CTTCGT-CTG-GATGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTC-TCATAATGTGA-GCTGAAG
*
60474557 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG-GCCGAAG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTGAGCTGAAG
*
60474605 CATGTCCCAGACATGCCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
60474632 ACACAAATCA
Statistics
Matches: 197, Mismatches: 42, Indels: 39
0.71 0.15 0.14
Matches are distributed among these distances:
43 1 0.01
44 31 0.16
45 28 0.14
46 36 0.18
47 49 0.25
48 33 0.17
49 18 0.09
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGAGCTGAAG
Found at i:60474613 original size:139 final size:138
Alignment explanation
Indices: 60474326--60474633 Score: 324
Period size: 139 Copynumber: 2.2 Consensus size: 138
60474316 TTGTAGATGC
* * *
60474326 CATGTCCCAGACATGGTCTTACACTTGCTCTCATATATGCGTGCTGATGCATGTCCCAAACATGT
1 CATGTCCCAGACAT-GTCTTACACTGGCACTCATATATGCGT-CTGAAGCATGTCCCAAACATGT
* * *
60474391 CTTACACTAGCACAACTCTTAGCTGATGCGTGTCCCAGACACATCTTACACTGGCTATCTCTGTC
64 CTTACACTAGCACAACTCTGAGCTGATGCATGTCCCAGACACATCTTACACTGGCTATCTATGTC
* *
60474456 GAGGCTAATG
129 GAGCCGAATG
* * *
60474466 CATATCCCAGACATGTCTTACTCTGGCACTCATAATATG-GT-TGAAGCATGTCCC-GACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCACTCAT-ATATGCGTCTGAAGCATGTCCCAAACATGTC
** ** *
60474528 TTACACTAGC-CTTCGTCTGGATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
65 TTACACTAGCACAAC-TCT-GA-GCTGATG-CATGTCCCAGACA-CATCTTACACTGGCTATC-T
60474592 AATGT-G-GCCGAA-G
124 -ATGTCGAGCCGAATG
*
60474605 CATGTCCCAGACATGCCTTACACTGGCAC
1 CATGTCCCAGACATGTCTTACACTGGCAC
60474634 ACAAATCATC
Statistics
Matches: 141, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
135 2 0.01
136 20 0.14
137 13 0.09
138 7 0.05
139 57 0.40
140 37 0.26
141 2 0.01
142 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (138 bp):
CATGTCCCAGACATGTCTTACACTGGCACTCATATATGCGTCTGAAGCATGTCCCAAACATGTCT
TACACTAGCACAACTCTGAGCTGATGCATGTCCCAGACACATCTTACACTGGCTATCTATGTCGA
GCCGAATG
Found at i:60479541 original size:46 final size:45
Alignment explanation
Indices: 60479406--60479628 Score: 188
Period size: 46 Copynumber: 4.8 Consensus size: 45
60479396 GTTATTGTGG
60479406 GCTAGTGTAAGACATGTCTGGGACATGCATCGGATACATT-ATGA-GA-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTGA-GACGAT
* * * *
60479452 GCCTA-TGTAAGATGATGTTTGGGACATGGCATCAGCATCGAGACGAGT
1 G-CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGACGA-T
* * *
60479500 GCTAGTGTAAGACATGTCTGGGAGATGCATCGGCCTTGAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACG-AT
*
60479546 GCTAGTGTAAGACATGTCTGGGACATGCA-CTGGC-TATGAGATGAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGCAT-TGAGACGAT
* *
60479591 AGTTAGTGTAAGACCATGTCTGGGATATGGCATCGGCA
1 -GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
60479629 CCCTACTCCA
Statistics
Matches: 145, Mismatches: 16, Indels: 29
0.76 0.08 0.15
Matches are distributed among these distances:
45 8 0.06
46 73 0.50
47 43 0.30
48 20 0.14
49 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAT
Found at i:60481720 original size:36 final size:36
Alignment explanation
Indices: 60481678--60481746 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
60481668 TTATATTGTG
*
60481678 AACCATGTGAACTTGGTGAATTGTATTATTATGGCA
1 AACCATGTGAACTTGGTGAATTGTATTAATATGGCA
* * *
60481714 AACCATGTTAACTTTGTGATTTGTATTAATATG
1 AACCATGTGAACTTGGTGAATTGTATTAATATG
60481747 ACGAACTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (36 bp):
AACCATGTGAACTTGGTGAATTGTATTAATATGGCA
Found at i:60485027 original size:44 final size:46
Alignment explanation
Indices: 60484869--60485041 Score: 188
Period size: 49 Copynumber: 3.7 Consensus size: 46
60484859 GGGATACGAT
* *
60484869 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAA
1 GCTGATGCCATGTCCCAGA-AAGGTCTTACACTGACTA-CACATCAAA
* * * * * * *
60484917 GTTGATGCCATATCCCAGACAGGTCTTGCACTAACTTTCATATTTCAAA
1 GCTGATGCCATGTCCCAGAAAGGTCTTACACTGAC-TACACA--TCAAA
* *
60484966 GCTGATGCCGTGTCCCAGAAAGGTCTTACACTGAC-ACACAAC-AA
1 GCTGATGCCATGTCCCAGAAAGGTCTTACACTGACTACACATCAAA
60485010 GCTGATGCCATGTCCCAGAAAGGTCTTACACT
1 GCTGATGCCATGTCCCAGAAAGGTCTTACACT
60485042 AGCTTGTATA
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
44 33 0.32
45 1 0.01
47 17 0.17
48 18 0.17
49 34 0.33
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (46 bp):
GCTGATGCCATGTCCCAGAAAGGTCTTACACTGACTACACATCAAA
Done.