Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 210 of 345
Found at i:60485034 original size:93 final size:97
Alignment explanation
Indices: 60484869--60485042 Score: 248
Period size: 93 Copynumber: 1.8 Consensus size: 97
60484859 GGGATACGAT
* * * *
60484869 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTTGATGCCATATCCCA
1 GCTGATGCCATGTCCCAGACAAGGTCTTACACTGACTAGCACAACAAAGCTGATGCCATATCCCA
* *
60484934 GACAGGTCTTGCACTAACTTTCATATTTCAAA
66 GAAAGGTCTTACACTAACTTTCATATTTCAAA
* *
60484966 GCTGATGCCGTGTCCCAGA-AAGGTCTTACACTGAC-A-CACAAC-AAGCTGATGCCATGTCCCA
1 GCTGATGCCATGTCCCAGACAAGGTCTTACACTGACTAGCACAACAAAGCTGATGCCATATCCCA
60485027 GAAAGGTCTTACACTA
66 GAAAGGTCTTACACTA
60485043 GCTTGTATAC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 31 0.45
94 5 0.07
95 1 0.01
96 14 0.20
97 18 0.26
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (97 bp):
GCTGATGCCATGTCCCAGACAAGGTCTTACACTGACTAGCACAACAAAGCTGATGCCATATCCCA
GAAAGGTCTTACACTAACTTTCATATTTCAAA
Found at i:60485087 original size:48 final size:47
Alignment explanation
Indices: 60485010--60485232 Score: 204
Period size: 46 Copynumber: 4.7 Consensus size: 47
60485000 CACACAACAA
* *
60485010 GCTGATGCCATGTCCCAGAAAGGTCTTACACTAGCTTGTATACCTCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATA-CTCGAG
* * * * *
60485059 G-TCGATGCATGTCCTAGACATGTTTTACACTAGCTCT-CAT-CTCAAT
1 GCT-GATGCATGTCCCAGACATGTCTTACACTAGCT-TGTATACTCGAG
* *
60485105 GCTGATGCATGTCCCAGACATGTGTTACACTGGCTTGTATATCTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATA-CTCGAG
* * * *
60485153 GCTGATACATGTCCCAGACATGTCTTACACTAGCTCT-TGT-CTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCT-TGTATACTCGAG
* * * *
60485199 GCCGATGCATGTCCTAAACATGTCTTACGCTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
60485233 ACACATATCA
Statistics
Matches: 143, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 69 0.48
47 1 0.01
48 65 0.45
49 7 0.05
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (47 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATACTCGAG
Found at i:60485124 original size:46 final size:46
Alignment explanation
Indices: 60484867--60485232 Score: 208
Period size: 48 Copynumber: 7.8 Consensus size: 46
60484857 ATGGGATACG
* ***
60484867 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-CATCA
1 ATGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTTATC-TCA
* * * * * * * *
60484915 AAGTTGATGCCATATCCCAGACAGGTCTTGCACTAACTTTCATATTTCA
1 ATGCTGATG-CATGTCCCAGACATGTCTTACACTAGC--TCTTATCTCA
* * * * * *
60484964 AAGCTGATGCCGTGTCCCAGAAAGGTCTTACACT-GACAC--A-CAACA
1 ATGCTGATG-CATGTCCCAGACATGTCTTACACTAG-CTCTTATC-TCA
* * *
60485009 A-GCTGATGCCATGTCCCAGAAAGGTCTTACACTAGCT-TGTATACCTCG
1 ATGCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-TAT--CTCA
* * * *
60485057 A-GGTCGATGCATGTCCTAGACATGTTTTACACTAGCTCTCATCTCA
1 ATGCT-GATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTCA
* * * *
60485103 ATGCTGATGCATGTCCCAGACATGTGTTACACTGGCTTGTATATCTCG
1 ATGCTGATGCATGTCCCAGACATGTCTTACACTAGC-TCT-TATCTCA
* * *
60485151 AGGCTGATACATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCA
1 ATGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTCA
* * * *
60485197 ATGCCGATGCATGTCCTAAACATGTCTTACGCTAGC
1 ATGCTGATGCATGTCCCAGACATGTCTTACACTAGC
60485233 ACACATATCA
Statistics
Matches: 250, Mismatches: 51, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
44 32 0.13
45 5 0.02
46 68 0.27
47 17 0.07
48 87 0.35
49 41 0.16
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTTATCTCA
Found at i:60485133 original size:94 final size:94
Alignment explanation
Indices: 60485010--60485232 Score: 295
Period size: 94 Copynumber: 2.4 Consensus size: 94
60485000 CACACAACAA
* * * *
60485010 GCTGATGCCATGTCCCAGAAAGGTCTTACACTAGCTTGTATACCTCGAGG-TCGATGCATGTCCT
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATACCTCGAGGCT-GATACATGTCCC
*
60485074 AGACATGTTTTACACTAGCTCTCATCTCAAT
64 AGACATGTCTTACACTAGCTCTCATCTCAAT
* * *
60485105 GCTGATGCATGTCCCAGACATGTGTTACACTGGCTTGTATATCTCGAGGCTGATACATGTCCCAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATACCTCGAGGCTGATACATGTCCCAG
**
60485170 ACATGTCTTACACTAGCTCTTGTCTCAAT
66 ACATGTCTTACACTAGCTCTCATCTCAAT
* * * *
60485199 GCCGATGCATGTCCTAAACATGTCTTACGCTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
60485233 ACACATATCA
Statistics
Matches: 111, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
94 103 0.93
95 8 0.07
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (94 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATACCTCGAGGCTGATACATGTCCCAG
ACATGTCTTACACTAGCTCTCATCTCAAT
Found at i:60485919 original size:20 final size:18
Alignment explanation
Indices: 60485882--60485924 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
60485872 CTATAGCAAC
60485882 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
60485899 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
60485919 TTACAA
1 TCACAA
60485925 ACTTTACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:60505508 original size:40 final size:40
Alignment explanation
Indices: 60505453--60505702 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
60505443 AACATTGGAA
60505453 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60505493 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60505533 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60505573 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
60505613 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
60505652 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
60505693 CTATATCCGG
1 ATATATCCGG
60505703 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:60513615 original size:40 final size:40
Alignment explanation
Indices: 60513560--60513809 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
60513550 AACATTGGAA
60513560 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60513600 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60513640 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
60513680 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
60513720 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
60513759 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
60513800 CTATATCCGG
1 ATATATCCGG
60513810 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:60520720 original size:37 final size:37
Alignment explanation
Indices: 60520670--60520747 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
60520660 TATAAAAGAA
60520670 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
60520707 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
60520744 GTCT
1 GTCT
60520748 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:60520910 original size:49 final size:49
Alignment explanation
Indices: 60520850--60520972 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
60520840 CATATATTTT
*
60520850 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
60520899 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
60520948 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
60520973 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:60524867 original size:40 final size:40
Alignment explanation
Indices: 60524822--60524989 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60524812 CGGAATATAA
60524822 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60524862 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
60524902 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
60524942 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60524982 CCGGATAT
1 CCGGATAT
60524990 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60528097 original size:7 final size:7
Alignment explanation
Indices: 60528087--60528126 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
60528077 TATATTATTT
60528087 ATTATAC
1 ATTATAC
60528094 ATTATAC
1 ATTATAC
60528101 ATTATAC
1 ATTATAC
60528108 ATTATAC
1 ATTATAC
60528115 ATTATAC
1 ATTATAC
60528122 ATTAT
1 ATTAT
60528127 CATCAGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (7 bp):
ATTATAC
Found at i:60532251 original size:10 final size:10
Alignment explanation
Indices: 60532222--60532330 Score: 55
Period size: 10 Copynumber: 10.4 Consensus size: 10
60532212 ATTTCATTGC
60532222 ATATTATGTAT
1 ATATTAT-TAT
60532233 ATATT-TTAT
1 ATATTATTAT
60532242 -TATATATTAT
1 ATAT-TATTAT
*
60532252 ATTTTATTAT
1 ATATTATTAT
*
60532262 ATACTGT-TCTCT
1 ATA-T-TAT-TAT
60532274 ATATTATCT-T
1 ATATTAT-TAT
*
60532284 CATTTTATTAT
1 -ATATTATTAT
*
60532295 ATATTATTTT
1 ATATTATTAT
60532305 ATTATTTATTAT
1 A-TA-TTATTAT
* *
60532317 TTATTAGTAT
1 ATATTATTAT
60532327 ATAT
1 ATAT
60532331 ATAATTAAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 23
0.70 0.09 0.21
Matches are distributed among these distances:
8 3 0.04
9 4 0.05
10 34 0.44
11 24 0.31
12 12 0.16
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (10 bp):
ATATTATTAT
Found at i:60532975 original size:64 final size:69
Alignment explanation
Indices: 60532829--60532979 Score: 177
Period size: 67 Copynumber: 2.2 Consensus size: 69
60532819 TTCATTATGC
* * ** *
60532829 TATATTTTGCATGAAATATTATTATGTATGTATTATGTAATTTATATTGTTATGTTCATTGTTTT
1 TATA-TTTGCATG-AATATTATAATGTA-GTATTATGAAATTTATATCATTATGTTCATCGTTTT
*
60532894 CTGTTAT
63 CTGATAT
*
60532901 TATATTTGCATGAA-ATTATAATGTA-TATTATGAAATTTATGTCATTAT-TT-ATCGTTTTCT-
1 TATATTTGCATGAATATTATAATGTAGTATTATGAAATTTATATCATTATGTTCATCGTTTTCTG
60532961 ATAT
66 ATAT
60532965 TATATTTGCATGAAT
1 TATATTTGCATGAAT
60532980 TGATAAAGTA
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
64 17 0.24
65 9 0.13
66 2 0.03
67 19 0.27
69 10 0.14
70 2 0.03
71 8 0.11
72 4 0.06
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (69 bp):
TATATTTGCATGAATATTATAATGTAGTATTATGAAATTTATATCATTATGTTCATCGTTTTCTG
ATAT
Found at i:60544517 original size:44 final size:44
Alignment explanation
Indices: 60544452--60544647 Score: 234
Period size: 44 Copynumber: 4.5 Consensus size: 44
60544442 TATAGATCGG
* * *
60544452 AGATAGTATATTTGGCGTCTCTATATTGACAGAGAGCAGATCGA
1 AGATAGCAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAA
* * * *
60544496 AGAT-GACAGATTTGCCTTCTCTGTATTGTCAGAGAGCAGATCAA
1 AGATAG-CAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAA
* * * * *
60544540 AGAT-GAAAGATTTGGCGTCTCTGTATTGTCGGAGAGCAGATCGA
1 AGATAG-CAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAA
*
60544584 AGATAGTAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAA
1 AGATAGCAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAA
*
60544628 AGATAGCAGATTTAGCGTCT
1 AGATAGCAGATTTGGCGTCT
60544648 TTGTATCGAC
Statistics
Matches: 131, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
43 1 0.01
44 129 0.98
45 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
AGATAGCAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAA
Found at i:60544595 original size:88 final size:88
Alignment explanation
Indices: 60544452--60544669 Score: 269
Period size: 88 Copynumber: 2.5 Consensus size: 88
60544442 TATAGATCGG
* * * * *
60544452 AGATAGTATATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATGACAGATTTGCCTTCTC
1 AGATAGAAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATGACAGATTTGCCGTCTC
* *
60544517 TGTATTGTCAGAGAGCAGATCAA
66 TATATTGACAGAGAGCAGATCAA
* * *
60544540 AGAT-GAAAGATTTGGCGTCTCTGTATTGTCGGAGAGCAGATCGAAGAT-AGTAGATTTGGCGTC
1 AGATAG-AAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATGA-CAGATTTGCCGTC
60544603 TCTATATTGACAGAGAGCAGATCAA
64 TCTATATTGACAGAGAGCAGATCAA
* * * * *
60544628 AGATAGCAGATTTAGCGTCTTTGTATCGACGGGGAGCAGATC
1 AGATAGAAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATC
60544670 TGTAATACCC
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
87 2 0.02
88 108 0.97
89 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (88 bp):
AGATAGAAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATGACAGATTTGCCGTCTC
TATATTGACAGAGAGCAGATCAA
Found at i:60544665 original size:44 final size:44
Alignment explanation
Indices: 60544452--60544669 Score: 233
Period size: 44 Copynumber: 5.0 Consensus size: 44
60544442 TATAGATCGG
* * * * *
60544452 AGATAGTATATTTGGCGTCTCTATATTGACAGAGAGCAGATCGA
1 AGATAGAAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCAA
* * * *
60544496 AGAT-GACAGATTTGCCTTCTCTGTATTGTCAGAGAGCAGATCAA
1 AGATAGA-AGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCAA
* *
60544540 AGAT-GAAAGATTTGGCGTCTCTGTATTGTCGGAGAGCAGATCGA
1 AGATAG-AAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCAA
* * *
60544584 AGATAGTAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCAA
1 AGATAGAAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCAA
* * * * *
60544628 AGATAGCAGATTTAGCGTCTTTGTATCGACGGGGAGCAGATC
1 AGATAGAAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATC
60544670 TGTAATACCC
Statistics
Matches: 148, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.01
44 145 0.98
45 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
AGATAGAAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCAA
Found at i:60546574 original size:67 final size:64
Alignment explanation
Indices: 60546448--60546619 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 64
60546438 TCGCTTGTAC
* * * * * * *
60546448 ACATGGTGAACAC-TCAGTACCACTCATGTGACCTAGCCA-ATTTATCTCGTAGCTCTCTTGTCT
1 ACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCT
* * *
60546511 ACATGGTGTCCTTCACCTGGAACCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGT
1 ACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGT
60546576 CT
63 CT
* *
60546578 ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 ACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
60546620 CATAATGTCT
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
63 8 0.09
64 29 0.32
66 22 0.24
67 31 0.34
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (64 bp):
ACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCT
Found at i:60547388 original size:30 final size:30
Alignment explanation
Indices: 60547353--60547413 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
60547343 TTCTTAACCC
60547353 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
60547383 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
60547413 A
1 A
60547414 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:60548291 original size:44 final size:44
Alignment explanation
Indices: 60548227--60548555 Score: 353
Period size: 44 Copynumber: 7.4 Consensus size: 44
60548217 GGCTATTACA
* * * * **
60548227 AGATCAAAAATAGTAGATTTGGCGTCTCTGTATTGGTAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGACAGAGAGC
60548271 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGACAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGACAGAGAGC
*
60548315 AGATCGAAGATAGTAGATTTGGCATCTCTGTATTGACAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGACAGAGAGC
*
60548359 AGATCGAAGAT-GACAGATTTGGCGTCTCTGTATTGACAGAGAGC
1 AGATCGAAGATAG-CAGATTTGGCATCTCTGTATTGACAGAGAGC
* * * * *
60548403 AGATCGAAGAT-GATAGATTTGACATCTCTATATTAGCCAGGGAGC
1 AGATCGAAGATAG-CAGATTTGGCATCTCTGTATT-GACAGAGAGC
* * * * *
60548448 AGATCGAAGATAGCAGATCTGACAT-TCGTGTGTTCACATCGA-AGT
1 AGATCGAAGATAGCAGATTTGGCATCTC-TGTATTGACA--GAGAGC
* * *
60548493 AGATTGAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGC
1 AGATCGAAGATAG-CAGATTTGGCATCTCTGTATT-GACAGAGAGC
*
60548538 AGATCGAAGATAGTAGAT
1 AGATCGAAGATAGCAGAT
60548556 CTGACATTTG
Statistics
Matches: 241, Mismatches: 33, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
43 1 0.00
44 157 0.65
45 76 0.32
46 7 0.03
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.26
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGACAGAGAGC
Found at i:60548519 original size:90 final size:89
Alignment explanation
Indices: 60548240--60548638 Score: 402
Period size: 90 Copynumber: 4.5 Consensus size: 89
60548230 TCAAAAATAG
* ** * * *
60548240 TAGATTTGGCGTCTCTGTATT-GGTAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTAT
1 TAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATCTCTGTAT
60548304 TGACAGAGAGCAGATCGAAGAT-A
66 TGACAGAGAGCAGATCGAAGATGA
* * * *
60548327 GTAGATTTGGCATCTCTGTATT-GACAGAGAGCAGATCGAAGAT-GACAGATTTGGCGTCTCTGT
1 -TAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAG-CAGATCTGACATCTCTGT
60548390 ATTGACAGAGAGCAGATCGAAGATGA
64 ATTGACAGAGAGCAGATCGAAGATGA
* * * *
60548416 TAGATTTGACATCTCTATATTAGCCAGGGAGCAGATCGAAGATAGCAGATCTGACAT-TCGTGTG
1 TAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATCTC-TGTA
* * *
60548480 TTCACATCGA-AGTAGATTGAAGATGA
65 TTGACA--GAGAGCAGATCGAAGATGA
* * *
60548506 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACAT-T-TGTAT
1 TAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATCTCTGTA-
* *
60548569 GTTTACATCGA-AGCAGATTGAAGATGA
65 -TTGACA--GAGAGCAGATCGAAGATGA
* * * * * *
60548596 TAGATTTGGCCTCTCCGTATTAGGCAAGGAGTAGATCAAAGAT
1 TAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGAT
60548639 TTCATCATGG
Statistics
Matches: 270, Mismatches: 32, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
87 1 0.00
88 104 0.39
89 37 0.14
90 126 0.47
91 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (89 bp):
TAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATCTCTGTAT
TGACAGAGAGCAGATCGAAGATGA
Found at i:60548600 original size:45 final size:45
Alignment explanation
Indices: 60548445--60548593 Score: 124
Period size: 45 Copynumber: 3.3 Consensus size: 45
60548435 TTAGCCAGGG
* *
60548445 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTCACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTTGTATGTTCACATCGA
* * * * ** ** *
60548490 AGTAGATTGAAGAT-GACAGATTTGGCATCTCTGTAT-TAGAC-GGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-T-TGTATGTTCACATCGA
* *
60548535 AGCAGATCGAAGATAGTAGATCTGACATTTGTATGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTTGTATGTTCACATCGA
*
60548580 AGCAGATTGAAGAT
1 AGCAGATCGAAGAT
60548594 GATAGATTTG
Statistics
Matches: 76, Mismatches: 22, Indels: 12
0.69 0.20 0.11
Matches are distributed among these distances:
43 5 0.07
44 5 0.07
45 58 0.76
46 5 0.07
47 3 0.04
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (45 bp):
AGCAGATCGAAGATAGCAGATCTGACATTTGTATGTTCACATCGA
Found at i:60550225 original size:20 final size:22
Alignment explanation
Indices: 60550176--60550225 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 22
60550166 TCCATTTATA
*
60550176 TATATACATTTTACATATAATT
1 TATATATATTTTACATATAATT
*
60550198 TAT-T-TATTTTA-A-ATATTT
1 TATATATATTTTACATATAATT
60550216 TATATATATT
1 TATATATATT
60550226 ATTTATTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.33
19 2 0.08
20 10 0.42
21 1 0.04
22 3 0.12
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
TATATATATTTTACATATAATT
Found at i:60550346 original size:33 final size:31
Alignment explanation
Indices: 60550309--60550413 Score: 94
Period size: 33 Copynumber: 3.3 Consensus size: 31
60550299 TTTCATTGCA
60550309 TATTATGTATATATTTTATTATATATTATATTT
1 TATTATGTAT-TATTTTATTAT-TATTATATTT
*
60550342 TATTATGTATTGTTCTCTA-TATTATCT-TCATTT
1 TATTATGTATTATT-T-TATTATTAT-TAT-ATTT
*
60550375 TATTATATATTATTTTATTATT-TTAT-TATT
1 TATTATGTATTATTTTATTATTATTATAT-TT
60550405 TATTA-GTAT
1 TATTATGTAT
60550414 ATATATAATT
Statistics
Matches: 61, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
29 4 0.07
30 8 0.13
31 4 0.07
32 12 0.20
33 31 0.51
34 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (31 bp):
TATTATGTATTATTTTATTATTATTATATTT
Found at i:60550395 original size:8 final size:8
Alignment explanation
Indices: 60550371--60550409 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
60550361 TATTATCTTC
60550371 ATTTTATT
1 ATTTTATT
*
60550379 A-TATATT
1 ATTTTATT
60550386 ATTTTATT
1 ATTTTATT
60550394 ATTTTATT
1 ATTTTATT
60550402 A-TTTATT
1 ATTTTATT
60550409 A
1 A
60550410 GTATATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 13 0.46
8 15 0.54
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
ATTTTATT
Found at i:60555664 original size:20 final size:20
Alignment explanation
Indices: 60555630--60555672 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
60555620 TGCCTAGTTA
60555630 CAACTCACGAACTCGG-ACT
1 CAACTCACGAACTCGGAACT
*
60555649 CAACTCAACGAGCTCGGAACT
1 CAACTC-ACGAACTCGGAACT
60555670 CAA
1 CAA
60555673 ATATCCTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.29
20 9 0.43
21 6 0.29
ACGTcount: A:0.35, C:0.35, G:0.16, T:0.14
Consensus pattern (20 bp):
CAACTCACGAACTCGGAACT
Found at i:60556125 original size:30 final size:30
Alignment explanation
Indices: 60556091--60556150 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
60556081 ATCTAATACG
* *
60556091 AACTTCGGTAAAATTACATTTTTGCCCCTA
1 AACTTCGGCAAAATTACACTTTTGCCCCTA
** *
60556121 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTCGGCAAAATTACACTTTTGCCCCTA
60556151 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTCGGCAAAATTACACTTTTGCCCCTA
Found at i:60576813 original size:43 final size:43
Alignment explanation
Indices: 60576765--60576905 Score: 162
Period size: 43 Copynumber: 3.3 Consensus size: 43
60576755 AGATATCGTG
*
60576765 TAAGACCGTGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
* * *
60576808 TAAGACCATGTCTGGGACATTGGCATCGTATCT-A-ATTT-CGTG
1 TAAGACCATGTCTGGGACATAGGCCTCG-AT-TGAGATTTACGTA
* ** *
60576850 TAAGACCATGTCTGGGACACAAACCTCGATTGAGATTTACATA
1 TAAGACCATGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
*
60576893 TATGACCATGTCT
1 TAAGACCATGTCT
60576906 AGGAGAACGA
Statistics
Matches: 81, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
40 1 0.01
41 3 0.04
42 30 0.37
43 43 0.53
44 3 0.04
45 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
Found at i:60577014 original size:85 final size:85
Alignment explanation
Indices: 60576760--60577003 Score: 303
Period size: 85 Copynumber: 2.9 Consensus size: 85
60576750 GCCTGAGATA
* * *
60576760 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
* * *
60576825 CATTGGCATCGTATCTAATT
66 CATCGACATCGTATCTGATT
** * *
60576845 TCGTGTAAGACCATGTCTGGGACACAAACCTCGATTGAGATTTACATATATGACCATGTCTAGGA
1 TCGTGTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
* *
60576910 GAACGACATCGTATCTGATT
66 CATCGACATCGTATCTGATT
* * * * *
60576930 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAAGACCATGTCTGGGACACAGGCCTCG--ATTGAGATTTACATATAAGACCATGTCTGG
60576993 GACATCGACAT
64 GACATCGACAT
60577004 TGTACTTGAT
Statistics
Matches: 134, Mismatches: 23, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
85 128 0.96
86 1 0.01
87 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
CATCGACATCGTATCTGATT
Found at i:60584111 original size:43 final size:42
Alignment explanation
Indices: 60584063--60584203 Score: 164
Period size: 43 Copynumber: 3.3 Consensus size: 42
60584053 AGATATCGGG
* *
60584063 TAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTTATGTA
1 TAAGACCATGTCTGGGACAC-GGCCTCGATTGAGATTTATGTA
* *
60584106 TAAGACCATGTCTGAGACATCGGCATCGTATCT-A-ATTTCATG--
1 TAAGACCATGTCTGGGACA-CGGCCTCG-AT-TGAGATTT-ATGTA
60584148 TAAGACCATGTCTGGGACACGGGCCTCGATTGAGATTTATGTA
1 TAAGACCATGTCTGGGACAC-GGCCTCGATTGAGATTTATGTA
60584191 TAAGACCATGTCT
1 TAAGACCATGTCT
60584204 AGGAGATCGA
Statistics
Matches: 83, Mismatches: 6, Indels: 18
0.78 0.06 0.17
Matches are distributed among these distances:
40 1 0.01
41 7 0.08
42 28 0.34
43 39 0.47
44 7 0.08
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACACGGCCTCGATTGAGATTTATGTA
Found at i:60584235 original size:85 final size:85
Alignment explanation
Indices: 60584062--60584262 Score: 262
Period size: 85 Copynumber: 2.4 Consensus size: 85
60584052 GAGATATCGG
* *
60584062 GTAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGAGACATC
1 GTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGAGACATC
* *
60584127 GGCATCGTATCTAATTTCAT
66 GACATCATATCTAATTTCAT
* *
60584147 GTAAGACCATGTCTGGGACACGGGCCTCGATTGAGATTTATGTATAAGACCATGTCT-AGGAGAT
1 GTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGA-GACAT
** *
60584211 CGACATCATA-CTTGGTTTCGT
65 CGACATCATATC-TAATTTCAT
* * *
60584232 GTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 GTAAGACCATGTCTGGGACACAGGCCTCGAT
60584263 ATTGAATTAC
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
84 2 0.02
85 99 0.98
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (85 bp):
GTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGAGACATC
GACATCATATCTAATTTCAT
Found at i:60586812 original size:27 final size:27
Alignment explanation
Indices: 60586770--60586913 Score: 189
Period size: 27 Copynumber: 5.3 Consensus size: 27
60586760 TGGATAAGTT
*
60586770 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
60586797 GTACAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
60586824 ATAGAATTACAGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
60586851 GTAGAAATACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
60586878 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
60586905 GTAAAATTA
1 GTAGAATTA
60586914 TCGATTTACC
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:60586913 original size:81 final size:81
Alignment explanation
Indices: 60586770--60586938 Score: 207
Period size: 81 Copynumber: 2.1 Consensus size: 81
60586760 TGGATAAGTT
* * * *
60586770 GTAGAATTACTGAAATACCCCTGTAGGGTACAATTACCGAAATACCCCTGTAGGATAGAATTA-C
1 GTAGAAATACCGAAATACCCCTGTAAGGTACAATTACCGAAATACCCCTGTAGGATAAAATTATC
*
60586834 AGAAATACCCTTGTAGG
66 -GAAATACCCTTGGAGG
* * * * *
60586851 GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTATC
1 GTAGAAATACCGAAATACCCCTGTAAGGTACAATTACCGAAATACCCCTGTAGGATAAAATTATC
**
60586916 GATTTACCCTTGGAGG
66 GAAATACCCTTGGAGG
60586932 GTA-AAAT
1 GTAGAAAT
60586939 GACTATTTTG
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
80 4 0.05
81 70 0.93
82 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (81 bp):
GTAGAAATACCGAAATACCCCTGTAAGGTACAATTACCGAAATACCCCTGTAGGATAAAATTATC
GAAATACCCTTGGAGG
Found at i:60592867 original size:40 final size:40
Alignment explanation
Indices: 60592776--60592883 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 40
60592766 TATCACGATT
* * ** *
60592776 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACCAATGCCTTCGGGTCTTAGCCCGGAAAGAACCACTA
* * *
60592816 GCACGAATGCCTTCGGGTCTTAGCCCGGAAATAGCCACTA
1 GCACCAATGCCTTCGGGTCTTAGCCCGGAAAGAACCACTA
* *
60592856 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACCAATGCCTTCGGGTCTTAGCCCGG
60592884 TTATAATTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (40 bp):
GCACCAATGCCTTCGGGTCTTAGCCCGGAAAGAACCACTA
Found at i:60600658 original size:40 final size:40
Alignment explanation
Indices: 60600496--60600697 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
60600486 CGAATGATGT
*
60600496 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
60600536 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
60600575 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
60600613 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
60600654 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
60600694 CCGG
1 CCGG
60600698 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:60600660 original size:78 final size:79
Alignment explanation
Indices: 60600495--60600646 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
60600485 TCGAATGATG
* * *
60600495 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
60600560 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
60600575 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
60600638 GTGCAAGTC
65 GTGCAAGTC
60600647 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:60608726 original size:40 final size:40
Alignment explanation
Indices: 60608564--60608765 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
60608554 CGAATGATGT
*
60608564 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
60608604 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
60608643 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
60608681 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
60608722 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
60608762 CCGG
1 CCGG
60608766 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:60608728 original size:78 final size:79
Alignment explanation
Indices: 60608563--60608714 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
60608553 TCGAATGATG
* * *
60608563 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
60608628 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
60608643 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
60608706 GTGCAAGTC
65 GTGCAAGTC
60608715 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:60614694 original size:941 final size:941
Alignment explanation
Indices: 60612872--60614757 Score: 3646
Period size: 941 Copynumber: 2.0 Consensus size: 941
60612862 TTTTGGGGCT
60612872 TGCCGGTTATTACCGACGATTTGTAAAAGGTTTCTCAGCGATAGCCACGCCAATGACGAAGCTAC
1 TGCCGGTTATTACCGACGATTTGTAAAAGGTTTCTCAGCGATAGCCACGCCAATGACGAAGCTAC
*
60612937 TCCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCAACTGAGAACT
66 TCCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCAACTGAAAACT
* *
60613002 TATTTGACTGAAGCCCCAATTCTAGTGCAACCCGAATCTGGCAAAGAGTTTGTCATCTATAGTGA
131 TATTTGACTGAAGCCCCAATTCTAGTGCAACCCAAATCGGGCAAAGAGTTTGTCATCTATAGTGA
* * * *
60613067 CGCCTCCCTCCTTGGGTTAGGTTGCGTATTGATGCAAGAAGGTCGAGTTGTGGCCTATTCGTCGA
196 CGCATCCCTACTTGGGTTAGGTTGCGTATTGATGCAAGAAGGGCGAGTTGTGGCCTATACGTCGA
*
60613132 GGCAATTAAAGCCACACGAGAAAAATTATCCGACCCATGATCTCGAATTAGCTGCCATCGTATTC
261 GACAATTAAAGCCACACGAGAAAAATTATCCGACCCATGATCTCGAATTAGCTGCCATCGTATTC
60613197 GCCTTAAAGATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTGTATTCGGATCACAAAAG
326 GCCTTAAAGATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTGTATTCGGATCACAAAAG
60613262 TCTCAAATATTTGATGACCCAAAGAGACTTAAATCTGCGACAAATACGTTGGCTCGAGTTGTTAA
391 TCTCAAATATTTGATGACCCAAAGAGACTTAAATCTGCGACAAATACGTTGGCTCGAGTTGTTAA
60613327 AAGATTATGAGCTCGTCATTGATTATCACCCGGGAAAGGCTAATGTGGTTGCGGATGCCTTAAGC
456 AAGATTATGAGCTCGTCATTGATTATCACCCGGGAAAGGCTAATGTGGTTGCGGATGCCTTAAGC
60613392 CGGAAATCACTGTTTGCTTTACGAGCGATGAATGTACACTTGTCTATCTTACCCGACAATGTGTT
521 CGGAAATCACTGTTTGCTTTACGAGCGATGAATGTACACTTGTCTATCTTACCCGACAATGTGTT
60613457 AGTAGCCGAATTAAAGGCCAAACCATTGTTGGCTCATCAAATTCGGGAAGCTCAGAAAGTTGATG
586 AGTAGCCGAATTAAAGGCCAAACCATTGTTGGCTCATCAAATTCGGGAAGCTCAGAAAGTTGATG
60613522 AGGAGTTGCTTGCAAAACGAGCTGAGTGTGTTCTGAACAAGGAATCGGAGTTTCAAATTGATGAT
651 AGGAGTTGCTTGCAAAACGAGCTGAGTGTGTTCTGAACAAGGAATCGGAGTTTCAAATTGATGAT
60613587 GACGGTTGTTTGAGGTTCAGAAGTCGTCTGTGTGTTCCAAAGAATTCGGAACTTATTTCGATAAT
716 GACGGTTGTTTGAGGTTCAGAAGTCGTCTGTGTGTTCCAAAGAATTCGGAACTTATTTCGATAAT
60613652 TCTGAACGAAGCCCATTGTAGCCGAATGGCAATCCACCCGGGGAGTACGAAGATGTACAACGATT
781 TCTGAACGAAGCCCATTGTAGCCGAATGGCAATCCACCCGGGGAGTACGAAGATGTACAACGATT
60613717 TGAAACGTCAGTTTTGGTGGCATGGTATGAAACGAGACATCTCCAACTTTGTTTCGAGATGTTTA
846 TGAAACGTCAGTTTTGGTGGCATGGTATGAAACGAGACATCTCCAACTTTGTTTCGAGATGTTTA
60613782 ATATGTCAACAAGTGAAAGCGGAACATCAAG
911 ATATGTCAACAAGTGAAAGCGGAACATCAAG
60613813 TGCCGGTTATTACCGACGATTTGTAAAAGGTTTCTCAGCGATAGCCACGCCAATGACGAAGCTAC
1 TGCCGGTTATTACCGACGATTTGTAAAAGGTTTCTCAGCGATAGCCACGCCAATGACGAAGCTAC
60613878 TCCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCAACTGAAAACT
66 TCCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCAACTGAAAACT
*
60613943 TATTTGACTGAAGCCCCAATTCTAGTGCAACCCAAATCGGGCAAAGAGTTTGTCATTTATAGTGA
131 TATTTGACTGAAGCCCCAATTCTAGTGCAACCCAAATCGGGCAAAGAGTTTGTCATCTATAGTGA
*
60614008 CGCATCCCTACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGGCGAGTTGTGGCCTATACGTCGA
196 CGCATCCCTACTTGGGTTAGGTTGCGTATTGATGCAAGAAGGGCGAGTTGTGGCCTATACGTCGA
* * * *
60614073 GACAATTAAAGCCACATGAGAAAAATTATCTGACCCATGATCTTGAATTGGCTGCCATCGTATTC
261 GACAATTAAAGCCACACGAGAAAAATTATCCGACCCATGATCTCGAATTAGCTGCCATCGTATTC
60614138 GCCTTAAAGATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTGTATTCGGATCACAAAAG
326 GCCTTAAAGATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTGTATTCGGATCACAAAAG
60614203 TCTCAAATATTTGATGACCCAAAGAGACTTAAATCTGCGACAAATACGTTGGCTCGAGTTGTTAA
391 TCTCAAATATTTGATGACCCAAAGAGACTTAAATCTGCGACAAATACGTTGGCTCGAGTTGTTAA
60614268 AAGATTATGAGCTCGTCATTGATTATCACCCGGGAAAGGCTAATGTGGTTGCGGATGCCTTAAGC
456 AAGATTATGAGCTCGTCATTGATTATCACCCGGGAAAGGCTAATGTGGTTGCGGATGCCTTAAGC
60614333 CGGAAATCACTGTTTGCTTTACGAGCGATGAATGTACACTTGTCTATCTTACCCGACAATGTGTT
521 CGGAAATCACTGTTTGCTTTACGAGCGATGAATGTACACTTGTCTATCTTACCCGACAATGTGTT
60614398 AGTAGCCGAATTAAAGGCCAAACCATTGTTGGCTCATCAAATTCGGGAAGCTCAGAAAGTTGATG
586 AGTAGCCGAATTAAAGGCCAAACCATTGTTGGCTCATCAAATTCGGGAAGCTCAGAAAGTTGATG
60614463 AGGAGTTGCTTGCAAAACGAGCTGAGTGTGTTCTGAACAAGGAATCGGAGTTTCAAATTGATGAT
651 AGGAGTTGCTTGCAAAACGAGCTGAGTGTGTTCTGAACAAGGAATCGGAGTTTCAAATTGATGAT
60614528 GACGGTTGTTTGAGGTTCAGAAGTCGTCTGTGTGTTCCAAAGAATTCGGAACTTATTTCGATAAT
716 GACGGTTGTTTGAGGTTCAGAAGTCGTCTGTGTGTTCCAAAGAATTCGGAACTTATTTCGATAAT
60614593 TCTGAACGAAGCCCATTGTAGCCGAATGGCAATCCACCCGGGGAGTACGAAGATGTACAACGATT
781 TCTGAACGAAGCCCATTGTAGCCGAATGGCAATCCACCCGGGGAGTACGAAGATGTACAACGATT
60614658 TGAAACGTCAGTTTTGGTGGCATGGTATGAAACGAGACATCTCCAACTTTGTTTCGAGATGTTTA
846 TGAAACGTCAGTTTTGGTGGCATGGTATGAAACGAGACATCTCCAACTTTGTTTCGAGATGTTTA
60614723 ATATGTCAACAAGTGAAAGCGGAACATCAAG
911 ATATGTCAACAAGTGAAAGCGGAACATCAAG
60614754 TGCC
1 TGCC
60614758 TTCAGGATTA
Statistics
Matches: 931, Mismatches: 14, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
941 931 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (941 bp):
TGCCGGTTATTACCGACGATTTGTAAAAGGTTTCTCAGCGATAGCCACGCCAATGACGAAGCTAC
TCCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCAACTGAAAACT
TATTTGACTGAAGCCCCAATTCTAGTGCAACCCAAATCGGGCAAAGAGTTTGTCATCTATAGTGA
CGCATCCCTACTTGGGTTAGGTTGCGTATTGATGCAAGAAGGGCGAGTTGTGGCCTATACGTCGA
GACAATTAAAGCCACACGAGAAAAATTATCCGACCCATGATCTCGAATTAGCTGCCATCGTATTC
GCCTTAAAGATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTGTATTCGGATCACAAAAG
TCTCAAATATTTGATGACCCAAAGAGACTTAAATCTGCGACAAATACGTTGGCTCGAGTTGTTAA
AAGATTATGAGCTCGTCATTGATTATCACCCGGGAAAGGCTAATGTGGTTGCGGATGCCTTAAGC
CGGAAATCACTGTTTGCTTTACGAGCGATGAATGTACACTTGTCTATCTTACCCGACAATGTGTT
AGTAGCCGAATTAAAGGCCAAACCATTGTTGGCTCATCAAATTCGGGAAGCTCAGAAAGTTGATG
AGGAGTTGCTTGCAAAACGAGCTGAGTGTGTTCTGAACAAGGAATCGGAGTTTCAAATTGATGAT
GACGGTTGTTTGAGGTTCAGAAGTCGTCTGTGTGTTCCAAAGAATTCGGAACTTATTTCGATAAT
TCTGAACGAAGCCCATTGTAGCCGAATGGCAATCCACCCGGGGAGTACGAAGATGTACAACGATT
TGAAACGTCAGTTTTGGTGGCATGGTATGAAACGAGACATCTCCAACTTTGTTTCGAGATGTTTA
ATATGTCAACAAGTGAAAGCGGAACATCAAG
Found at i:60617738 original size:40 final size:40
Alignment explanation
Indices: 60617576--60617777 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
60617566 CGAATGATGT
*
60617576 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
60617616 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
60617655 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
60617693 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
60617734 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
60617774 CCGG
1 CCGG
60617778 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:60617740 original size:78 final size:79
Alignment explanation
Indices: 60617575--60617726 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
60617565 TCGAATGATG
* * *
60617575 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
60617640 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
60617655 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
60617718 GTGCAAGTC
65 GTGCAAGTC
60617727 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:60619268 original size:27 final size:27
Alignment explanation
Indices: 60619212--60619491 Score: 300
Period size: 27 Copynumber: 10.2 Consensus size: 27
60619202 GGGCAAAATA
* * * *
60619212 GTAATTTTACCCTACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCC
* **
60619238 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCC
60619265 GTAATTCTACCCTACAGGGGTATTT-C
1 GTAATTCTACCCTACAGGGGTATTTCC
*
60619291 GATAATTCTACCCTACAGGGGTA-TTGC
1 G-TAATTCTACCCTACAGGGGTATTTCC
* *
60619318 GATAATTCTACCCCACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCC
*
60619346 GTAATTCTACCTCTACCCTACAGGGGTATTTCG
1 GTAA---T---TCTACCCTACAGGGGTATTTCC
*
60619379 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCC
*
60619406 GTAATTCTACCCTACAGGGGTA-TTGC
1 GTAATTCTACCCTACAGGGGTATTTCC
*
60619432 GATAATTCTACCCTACA-GGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCC
* *
60619459 GTAATTCTACCCCACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCC
60619486 GTAATT
1 GTAATT
60619492 TTGTAAATCA
Statistics
Matches: 223, Mismatches: 18, Indels: 25
0.84 0.07 0.09
Matches are distributed among these distances:
26 39 0.17
27 154 0.69
28 3 0.01
30 2 0.01
33 25 0.11
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCC
Found at i:60619310 original size:54 final size:54
Alignment explanation
Indices: 60619211--60619491 Score: 331
Period size: 54 Copynumber: 5.1 Consensus size: 54
60619201 GGGGCAAAAT
* * * * *
60619211 AGTAATTTTACCCTACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTTT
1 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTG
*
60619264 AGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTA-TTG
1 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTG
* *
60619317 CGATAATTCTACCCCACAGGGGTATTTCGGTAATTCTACCTCTACCCTACAGGGGTATTTCG
1 AG-TAATTCTACCCTACAGGGGTATTTCGGTAA---T---TCTACCCTACAGGGGTATTT-G
60619379 -GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTG
1 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTG
* * *
60619431 CGATAATTCTACCCTACA-GGGTATTTCAGTAATTCTACCCCACAGGGGTATTTCG
1 AG-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT-G
60619486 -GTAATT
1 AGTAATT
60619492 TTGTAAATCA
Statistics
Matches: 202, Mismatches: 12, Indels: 28
0.83 0.05 0.12
Matches are distributed among these distances:
52 1 0.00
53 57 0.28
54 91 0.45
55 1 0.00
57 2 0.01
60 46 0.23
61 3 0.01
62 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (54 bp):
AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTG
Found at i:60619393 original size:114 final size:109
Alignment explanation
Indices: 60619213--60619491 Score: 395
Period size: 114 Copynumber: 2.6 Consensus size: 109
60619203 GGCAAAATAG
* * * * * **
60619213 TAATTTTACCCTACAAGGTATCTCGGTAATTC--CACCCTACAGGGGTATTTTAGTAATTCTACC
1 TAATTCTACCCCACAGGGTATTTCAGTAATTCTACACCCTACAGGGGTATTTCGGTAATTCTACC
60619276 CTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGA
66 CTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGA
*
60619320 TAATTCTACCCCACAGGGGTATTTCGGTAATTCTACCTCTACCCTACAGGGGTATTTCGGTAATT
1 TAATTCTACCCCACA-GGGTATTTCAGTAATTCTA---C-ACCCTACAGGGGTATTTCGGTAATT
*
60619385 CTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGA
61 CTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGA
*
60619434 TAATTCTACCCTACAGGGTATTTCAGTAATTCTAC-CCC-ACAGGGGTATTTCGGTAATT
1 TAATTCTACCCCACAGGGTATTTCAGTAATTCTACACCCTACAGGGGTATTTCGGTAATT
60619492 TTGTAAATCA
Statistics
Matches: 156, Mismatches: 9, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
107 33 0.21
108 18 0.12
110 1 0.01
113 19 0.12
114 85 0.54
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (109 bp):
TAATTCTACCCCACAGGGTATTTCAGTAATTCTACACCCTACAGGGGTATTTCGGTAATTCTACC
CTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTGCGA
Found at i:60619506 original size:27 final size:27
Alignment explanation
Indices: 60619476--60619762 Score: 247
Period size: 27 Copynumber: 10.6 Consensus size: 27
60619466 TACCCCACAG
* **
60619476 GGGTATTTCGGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
*** * * **
60619503 GGGTAAAATAGTAATTCTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
60619530 GGGTACTTTT-GTAATTTTACAAGTCGA
1 GGGTA-TTTTGGTAATTTTACAAATCAA
*** ** *
60619557 GGGTATTTCCATAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * *
60619584 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
*
60619611 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AA
*
60619638 GGGTATTTTGGTAATTTTATAAA-CAAA
1 GGGTATTTTGGTAATTTTACAAATC-AA
* * *
60619665 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
** *
60619692 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
*
60619719 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
*
60619746 GGGTATTTTGGTGATTT
1 GGGTATTTTGGTAATTT
60619763 GGTAAACTAA
Statistics
Matches: 216, Mismatches: 40, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.02
27 210 0.97
28 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAA
Found at i:60619769 original size:27 final size:27
Alignment explanation
Indices: 60619527--60619762 Score: 249
Period size: 27 Copynumber: 8.7 Consensus size: 27
60619517 TTCTGTAAAT
**
60619527 CAAGGGTACTTTT-GTAATTTTACAAGT
1 CAAGGGTA-TTTTGGTAATTTTACAAAC
* *** ***
60619554 CGAGGGTATTTCCATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
60619581 CGAGGGTATTTTAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
60619608 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
60619635 TAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
60619662 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
60619689 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
60619716 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
60619743 CAAGGGTATTTTGGTGATTT
1 CAAGGGTATTTTGGTAATTT
60619763 GGTAAACTAA
Statistics
Matches: 178, Mismatches: 30, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 3 0.02
27 175 0.98
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:60623584 original size:43 final size:43
Alignment explanation
Indices: 60623486--60623620 Score: 132
Period size: 43 Copynumber: 3.1 Consensus size: 43
60623476 TCTGGGATGT
* * *
60623486 TGGCATCGAT-TTGTGATTTATGTGTAAGACCATGTCTAGGATAT
1 TGGCATCGATATT-TGATTT-CGTGTAAGACCATGTCTAGGACAG
*
60623530 TGGCATC-ATATTTGATTTCGTGTAAGACCCTGTCT-GGAACAG
1 TGGCATCGATATTTGATTTCGTGTAAGACCATGTCTAGG-ACAG
* * ** * *
60623572 TGGCATCGATATTTGATTACATGTAAGACCACATCTAGGATAT
1 TGGCATCGATATTTGATTTCGTGTAAGACCATGTCTAGGACAG
60623615 TGGCAT
1 TGGCAT
60623621 TGTATGAGCT
Statistics
Matches: 76, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
41 2 0.03
42 24 0.32
43 39 0.51
44 11 0.14
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.35
Consensus pattern (43 bp):
TGGCATCGATATTTGATTTCGTGTAAGACCATGTCTAGGACAG
Found at i:60649040 original size:6 final size:6
Alignment explanation
Indices: 60649022--60649052 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
60649012 ACTAAATCCC
60649022 AAATTA AAA-TA AAATTA AAATTA AAATTA AA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AA
60649053 GAGGCCTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAATTA
Found at i:60658151 original size:27 final size:26
Alignment explanation
Indices: 60658116--60658227 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
60658106 AGCATGGCTG
* *
60658116 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
60658142 CCAGATACAGATAATCGTGGCAAAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
60658170 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
60658197 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
60658224 CCAG
1 CCAG
60658228 GACGCTTCTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 15 0.20
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:60658180 original size:54 final size:54
Alignment explanation
Indices: 60658116--60658227 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
60658106 AGCATGGCTG
*
60658116 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAAAACCA
* * * *
60658170 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAAACCA
60658224 CCAG
1 CCAG
60658228 GACGCTTCTT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAAACCA
Found at i:60659692 original size:24 final size:24
Alignment explanation
Indices: 60659660--60659733 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
60659650 ACACAGTTCA
*
60659660 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTTATCAGCTCCTAAATCCTCT
*
60659684 CCCTTATCATCTCCTAAATCCTCT
1 CCCTTATCAGCTCCTAAATCCTCT
* *
60659708 CTCTTATCAGCTCCTAAATCTTCT
1 CCCTTATCAGCTCCTAAATCCTCT
60659732 CC
1 CC
60659734 AGACAGACTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.22, C:0.41, G:0.03, T:0.35
Consensus pattern (24 bp):
CCCTTATCAGCTCCTAAATCCTCT
Found at i:60661899 original size:74 final size:75
Alignment explanation
Indices: 60661807--60661945 Score: 210
Period size: 74 Copynumber: 1.9 Consensus size: 75
60661797 AGGAAACCAT
* * * *
60661807 GATTATTACCTTATTAATAGAGAAGACAAATGG-AAGTTAGAAAAAGGAATTATATTTTTTCCAA
1 GATTATTACCTTATTAATAGAGAAGACAAATGGAAACTTAGAAAAAGAAATTAAATTCTTTCCAA
60661871 TACAATATAG
66 TACAATATAG
*
60661881 GATTATT-CCTTTATTAATAGAGAAGGCAAATGGAAACTTAGAAAAAGAAATTAAATTCTTTCCA
1 GATTATTACC-TTATTAATAGAGAAGACAAATGGAAACTTAGAAAAAGAAATTAAATTCTTTCCA
60661945 A
65 A
60661946 AAGAATATTC
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
73 2 0.03
74 29 0.50
75 27 0.47
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (75 bp):
GATTATTACCTTATTAATAGAGAAGACAAATGGAAACTTAGAAAAAGAAATTAAATTCTTTCCAA
TACAATATAG
Found at i:60662107 original size:138 final size:138
Alignment explanation
Indices: 60661929--60662345 Score: 622
Period size: 138 Copynumber: 3.0 Consensus size: 138
60661919 TAGAAAAAGA
* * * *
60661929 AATTAAATTCTTTCCAAAAGAATATTCATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAG
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
60661994 TATAACTATTTATATTAATAAATTCGGTAAATTATATACAATTAATATTTTGTATGAATAAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
60662059 CATATATT
131 CATATATT
* * **
60662067 AATTATATTCTTTTCAAAAGAATATTAATTTCCTTGTCTTTTATATTTTGAATGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
60662132 TATAAATATTTATATTAATAAATTCGGTAAAATATATA-AATTAATATTTTATATAAATCAGATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
60662196 CATATATT
131 CATATATT
*
60662204 AATTATATTATTTCCAAAAGAATATTAATTTCCATGT-TTTATATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTT-TATATTTTGACCGAAATTAATTA
* * * * *
60662268 CTATAACAATTTATATTGATAAATTTGATAAAATATATACAATTAATATTTTGTATGAATCAAAT
65 ATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
*
60662333 TGATATATT
130 TCATATATT
60662342 AATT
1 AATT
60662346 TTATCTATGT
Statistics
Matches: 248, Mismatches: 29, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
136 3 0.01
137 118 0.48
138 127 0.51
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:60664889 original size:43 final size:44
Alignment explanation
Indices: 60664813--60664900 Score: 133
Period size: 43 Copynumber: 2.0 Consensus size: 44
60664803 CCAAAACATG
*
60664813 TGTCACATTTATCATGAACCCAGACCACAACTCATGAGTTCAGA
1 TGTCACATATATCATGAACCCAGACCACAACTCATGAGTTCAGA
* * *
60664857 TGTCATATATATCAT-AACTCAGACCACTACTCATGAGTTCAGA
1 TGTCACATATATCATGAACCCAGACCACAACTCATGAGTTCAGA
60664900 T
1 T
60664901 CATATAGTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 27 0.68
44 13 0.32
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.28
Consensus pattern (44 bp):
TGTCACATATATCATGAACCCAGACCACAACTCATGAGTTCAGA
Found at i:60668276 original size:30 final size:30
Alignment explanation
Indices: 60668240--60668300 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
60668230 CATAGGCTGG
* * *
60668240 CACATGGGTGTATGGGCTGCCCGTATGGAT
1 CACATGGGCGTATGGCCTACCCGTATGGAT
* *
60668270 CACATGGGCGTGTGGCCTACCCGTGTGGAT
1 CACATGGGCGTATGGCCTACCCGTATGGAT
60668300 C
1 C
60668301 CTAAAAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.15, C:0.25, G:0.36, T:0.25
Consensus pattern (30 bp):
CACATGGGCGTATGGCCTACCCGTATGGAT
Found at i:60671630 original size:79 final size:81
Alignment explanation
Indices: 60671529--60671713 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
60671519 ACGACTCGCT
** *
60671529 CAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTC-GGATCTTAACCC
* *
60671592 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
60671609 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAACGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTAACCCGG
*
60671673 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
60671689 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60671714 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:60671713 original size:40 final size:39
Alignment explanation
Indices: 60671522--60671713 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
60671512 GGATATAACG
* ** *
60671522 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
60671562 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
60671602 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
60671641 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
* *
60671681 ACTTAGCACAAAGCCTTTGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
60671714 CATCATTCAA
Statistics
Matches: 123, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 81 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:60679615 original size:79 final size:81
Alignment explanation
Indices: 60679487--60679680 Score: 245
Period size: 79 Copynumber: 2.4 Consensus size: 81
60679477 TTAACGGATA
* **
60679487 TAACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA
1 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGA
* *
60679551 -CTTAACCCGGGTTTAG
65 TCTTAACCCGGATATAG
*
60679567 TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGAT
1 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGAT
**
60679630 CTTAGTCCGGATATAG
66 CTTAACCCGGATATAG
* *
60679646 TCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
60679681 CATCATTCAA
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.54
80 43 0.43
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGAT
CTTAACCCGGATATAG
Found at i:60679680 original size:40 final size:39
Alignment explanation
Indices: 60679487--60679680 Score: 194
Period size: 40 Copynumber: 4.9 Consensus size: 39
60679477 TTAACGGATA
* ** *
60679487 TAACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAG
1 TAACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAG
* * * *
60679527 TAACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAG
1 TAACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAG
* *
60679567 TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTAT
1 TAACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAG
* *
60679606 TAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATATAG
1 TAACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAG
* *
60679646 TCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TAAC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
60679681 CATCATTCAA
Statistics
Matches: 128, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 85 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
TAACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAG
Found at i:60692809 original size:39 final size:40
Alignment explanation
Indices: 60692731--60692920 Score: 167
Period size: 39 Copynumber: 4.8 Consensus size: 40
60692721 GGATATAACG
* *
60692731 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGGTT-TAGTA
*
60692771 ACTCGCACGAATGCCTT-GGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* * *
60692810 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* * ** * * *
60692849 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAACCCGGGTTTAGTA
* *
60692889 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAACCCGG
60692921 ACATCATTCA
Statistics
Matches: 127, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 60 0.47
40 55 0.43
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
Found at i:60698407 original size:47 final size:49
Alignment explanation
Indices: 60698141--60698448 Score: 561
Period size: 49 Copynumber: 6.4 Consensus size: 49
60698131 GTATGAGATA
60698141 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60698190 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60698239 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60698288 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
60698337 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
60698384 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
60698431 TATATATGTGATAGGGCC
1 TATATATGTGATAAGGCC
60698449 GAGTGGCCAA
Statistics
Matches: 255, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
47 62 0.24
48 5 0.02
49 188 0.74
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:60698449 original size:47 final size:48
Alignment explanation
Indices: 60698141--60698492 Score: 539
Period size: 49 Copynumber: 7.3 Consensus size: 48
60698131 GTATGAGATA
60698141 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
60698190 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
60698239 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
60698288 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
60698337 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* *
60698384 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* * * * * * * *
60698431 TATATATGTGATAGGGCCGAGTGGCCAACGTGGTGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* *
60698478 TATAAATATGATAAG
1 TATATATGTGATAAG
60698493 TCCCGAAGGG
Statistics
Matches: 291, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 98 0.34
48 5 0.02
49 188 0.65
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
Found at i:60703607 original size:14 final size:15
Alignment explanation
Indices: 60703588--60703617 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
60703578 ATTTTTGACT
60703588 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
60703602 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
60703617 T
1 T
60703618 CTTGATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:60707327 original size:48 final size:47
Alignment explanation
Indices: 60707226--60707332 Score: 126
Period size: 48 Copynumber: 2.2 Consensus size: 47
60707216 AGGGGATATA
* **
60707226 TTGATTTGGCTTCGGGCCATGAAATCGGCACTACGGGTGTGAGTTAC
1 TTGATTTGGCTTCGGGCCATGAAATCGACACTACGGGTGCAAGTTAC
* * *
60707273 TTTGATTTGGCTTCGGGCCTTGATATCGACACTTCGGGTGCAAGCTTCAC
1 -TTGATTTGGCTTCGGGCCATGAAATCGACACTACGGGTGCAAG-TT-AC
60707323 -TGATTTGGCT
1 TTGATTTGGCT
60707333 ATGGGCTATG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
48 47 0.92
49 2 0.04
50 2 0.04
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.34
Consensus pattern (47 bp):
TTGATTTGGCTTCGGGCCATGAAATCGACACTACGGGTGCAAGTTAC
Found at i:60709610 original size:27 final size:26
Alignment explanation
Indices: 60709568--60709812 Score: 247
Period size: 27 Copynumber: 9.0 Consensus size: 26
60709558 GCAGAAATGG
*
60709568 TGACCGAAATACCCCCATAGGGTAAGA
1 TGACCGAAATA-CCCCATAGGGTAAAA
*
60709595 TGACTGAAATATCCCCATAGGGTAAAA
1 TGACCGAAATA-CCCCATAGGGTAAAA
* *
60709622 TGACCAAAATACCCCCAAAGGGTAAAA
1 TGACCGAAATA-CCCCATAGGGTAAAA
*
60709649 TGACCGAAATACTTCCATAGGGTAAAA
1 TGACCGAAATAC-CCCATAGGGTAAAA
* * *
60709676 TGACCCAAATACCCCATAAGATAAAA
1 TGACCGAAATACCCCATAGGGTAAAA
* *
60709702 TGACCAAAATACCCCCTAATAGGGTAAGA
1 TGACCGAAATA-CCCC--ATAGGGTAAAA
** * *
60709731 TGACTAAAATACCCCTGTAGGGTAAGA
1 TGACCGAAATACCCC-ATAGGGTAAAA
* *
60709758 TGACCGAAATACCTCCATAAGATAAAA
1 TGACCGAAATACC-CCATAGGGTAAAA
*
60709785 TGACCGAAATACCCCTGTAGGGTAAAA
1 TGACCGAAATACCCC-ATAGGGTAAAA
60709812 T
1 T
60709813 AACTATTTTG
Statistics
Matches: 182, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
26 24 0.13
27 134 0.74
28 6 0.03
29 18 0.10
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.18
Consensus pattern (26 bp):
TGACCGAAATACCCCATAGGGTAAAA
Found at i:60709761 original size:109 final size:107
Alignment explanation
Indices: 60709568--60709799 Score: 293
Period size: 109 Copynumber: 2.1 Consensus size: 107
60709558 GCAGAAATGG
* * * ** *
60709568 TGACCGAAATACCCCCATAGGGTAAGATGACTGAAATATCCCCATAGGGTAAAATGACCAAAATA
1 TGACCGAAATA-CCCCATAAGATAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATA
* * *
60709633 CCCCCAAAGGGTAAAATGACCGAAATACTTCCATAGGGTAAAA
65 CCCCCAAAGGGTAAAATGACCGAAATACCTCCATAAGATAAAA
* * *
60709676 TGACCCAAATACCCCATAAGATAAAATGACCAAAATACCCCCTAATAGGGTAAGATGACTAAAAT
1 TGACCGAAATACCCCATAAGATAAAATGACCAAAATACCCCC--ATAGGGTAAAATGACCAAAAT
*** *
60709741 ACCCCTGTAGGGTAAGATGACCGAAATACCTCCATAAGATAAAA
64 ACCCCCAAAGGGTAAAATGACCGAAATACCTCCATAAGATAAAA
60709785 TGACCGAAATACCCC
1 TGACCGAAATACCCC
60709800 TGTAGGGTAA
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
107 25 0.24
108 10 0.10
109 70 0.67
ACGTcount: A:0.42, C:0.24, G:0.16, T:0.18
Consensus pattern (107 bp):
TGACCGAAATACCCCATAAGATAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATAC
CCCCAAAGGGTAAAATGACCGAAATACCTCCATAAGATAAAA
Found at i:60709837 original size:27 final size:27
Alignment explanation
Indices: 60709807--60710073 Score: 247
Period size: 27 Copynumber: 10.0 Consensus size: 27
60709797 CCCTGTAGGG
* *
60709807 TAAAATAACTATTTTGCCCTTATGTTT
1 TAAAATGACTATTTTGCCCTTATGTGT
* * *
60709834 TAAAATGACGA--TTGTCCTTATGTGA
1 TAAAATGACTATTTTGCCCTTATGTGT
* *
60709859 TAAAATGA-TGGTTTTGCCCTTATGTGG
1 TAAAATGACT-ATTTTGCCCTTATGTGT
* *
60709886 CAAAATGACTATTTTACCCTTATGTGT
1 TAAAATGACTATTTTGCCCTTATGTGT
* *
60709913 TAAATTTAC-AGTTTTGCCCTTATGTGT
1 TAAAATGACTA-TTTTGCCCTTATGTGT
* *
60709940 TAAATTGACGATTTTGCCCTTATGTGT
1 TAAAATGACTATTTTGCCCTTATGTGT
* * * *
60709967 TAAAATGA-TGATTTTTCCCTTGTGCGA
1 TAAAATGACT-ATTTTGCCCTTATGTGT
** * *
60709994 TAAAATGAAGATTTTGCCCTTGTGTGA
1 TAAAATGACTATTTTGCCCTTATGTGT
* * *
60710021 TAAAATGACGATTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGT
*
60710048 CAAAATGACTATTTTGCCCTTATGTG
1 TAAAATGACTATTTTGCCCTTATGTG
60710074 ATGTATGTTT
Statistics
Matches: 198, Mismatches: 34, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
25 19 0.10
26 1 0.01
27 176 0.89
28 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGT
Found at i:60709972 original size:81 final size:81
Alignment explanation
Indices: 60709808--60710073 Score: 315
Period size: 81 Copynumber: 3.3 Consensus size: 81
60709798 CCTGTAGGGT
* * * * * *
60709808 AAAATAACTATTTTGCCCTTATGTTTTAAAATGAC-G-ATTGTCCTTATGTGATAAAATGATGGT
1 AAAATGACTATTTTGCCCTTATGTGTTAAAATGACAGTTTTGCCCTTATGTGATAAAATGACGAT
60709871 TTTGCCCTTATGTGGC
66 TTTGCCCTTATGTGGC
* * * * *
60709887 AAAATGACTATTTTACCCTTATGTGTTAAATTTACAGTTTTGCCCTTATGTGTTAAATTGACGAT
1 AAAATGACTATTTTGCCCTTATGTGTTAAAATGACAGTTTTGCCCTTATGTGATAAAATGACGAT
**
60709952 TTTGCCCTTATGTGTT
66 TTTGCCCTTATGTGGC
* * * * *
60709968 AAAATGA-TGATTTTTCCCTTGTGCGATAAAATGA-AGATTTTGCCCTTGTGTGATAAAATGACG
1 AAAATGACT-ATTTTGCCCTTATGTGTTAAAATGACAG-TTTTGCCCTTATGTGATAAAATGACG
*
60710031 ATTTTTCCCTTATGTGGC
64 ATTTTGCCCTTATGTGGC
60710049 AAAATGACTATTTTGCCCTTATGTG
1 AAAATGACTATTTTGCCCTTATGTG
60710074 ATGTATGTTT
Statistics
Matches: 154, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
79 30 0.19
80 4 0.03
81 119 0.77
82 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (81 bp):
AAAATGACTATTTTGCCCTTATGTGTTAAAATGACAGTTTTGCCCTTATGTGATAAAATGACGAT
TTTGCCCTTATGTGGC
Found at i:60710415 original size:18 final size:18
Alignment explanation
Indices: 60710394--60710439 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
60710384 TACTGCTTAT
*
60710394 TGTTACTGCACTGTTTAC
1 TGTTACTGCACTGATTAC
*
60710412 TGTTACTGCAGTGATTAC
1 TGTTACTGCACTGATTAC
60710430 TGTTACTGCA
1 TGTTACTGCA
60710440 ATAGGCCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (18 bp):
TGTTACTGCACTGATTAC
Found at i:60712101 original size:22 final size:21
Alignment explanation
Indices: 60712076--60712129 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
60712066 TGCAGGGCTC
**
60712076 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAA-GG
* *
60712098 ACACACTCGTGTGACCCAAGG
1 ACACGCCCGTGTGACCCAAGG
*
60712119 ACACGTCCGTG
1 ACACGCCCGTG
60712130 CTAAAGGTCG
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (21 bp):
ACACGCCCGTGTGACCCAAGG
Found at i:60714743 original size:21 final size:21
Alignment explanation
Indices: 60714717--60714760 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
60714707 ATTTAATTAA
60714717 ATTGTCATTTAATAACTTATC
1 ATTGTCATTTAATAACTTATC
60714738 ATTGTCATTTAATAACTTATC
1 ATTGTCATTTAATAACTTATC
60714759 AT
1 AT
60714761 CTCTCCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.48
Consensus pattern (21 bp):
ATTGTCATTTAATAACTTATC
Found at i:60719169 original size:21 final size:20
Alignment explanation
Indices: 60719140--60719179 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
60719130 ACAAAACTTG
60719140 CATAACTATCATCAAACATT
1 CATAACTATCATCAAACATT
*
60719160 CATAACCTATCATTAAACAT
1 CATAA-CTATCATCAAACAT
60719180 CAAAATACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (20 bp):
CATAACTATCATCAAACATT
Found at i:60723805 original size:27 final size:28
Alignment explanation
Indices: 60723768--60723836 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
60723758 TATTTACTTA
* *
60723768 AAAATGACCGAAATAACTC-CATAGGGT
1 AAAATGACCGAAATAACCCTCATAAGGT
60723795 AAAATGACCGAAAT-ACCCTCATAAGGT
1 AAAATGACCGAAATAACCCTCATAAGGT
* *
60723822 AAAATGGCAGAAATA
1 AAAATGACCGAAATA
60723837 CCTCAGTAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.08
27 33 0.92
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (28 bp):
AAAATGACCGAAATAACCCTCATAAGGT
Found at i:60723962 original size:27 final size:27
Alignment explanation
Indices: 60723909--60724000 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 27
60723899 TGATAAACTA
* *
60723909 ACTATTTTGCCCTCA--TGGTAAAATG
1 ACTATTTTGCCCTTAGGTGGTAGAATG
* *
60723934 ACTATTTTTCCCTTATGTGGTAGAATG
1 ACTATTTTGCCCTTAGGTGGTAGAATG
* *
60723961 ACTAATTTGCCCTTAGGTGGTAGGATG
1 ACTATTTTGCCCTTAGGTGGTAGAATG
*
60723988 ACTGTTTTGCCCT
1 ACTATTTTGCCCT
60724001 ACGTGATGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
25 13 0.23
27 43 0.77
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (27 bp):
ACTATTTTGCCCTTAGGTGGTAGAATG
Found at i:60731044 original size:46 final size:46
Alignment explanation
Indices: 60730994--60731165 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
60730984 TGGTTGAGCA
60730994 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60731040 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60731085 CATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60731132 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60731166 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 22 0.21
46 48 0.46
47 24 0.23
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60731149 original size:92 final size:93
Alignment explanation
Indices: 60730991--60731160 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
60730981 GGATGGTTGA
* *
60730991 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60731056 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
60731084 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60731148 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60731161 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 50 0.68
93 24 0.32
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60739205 original size:40 final size:39
Alignment explanation
Indices: 60739161--60739286 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
60739151 GGGACTCAAC
*
60739161 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
** * * *
60739201 CCGGATTTAGTAACTCACACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
60739241 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
60739281 CCGGAT
1 CCGGAT
60739287 ATCATTTGAA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
40 63 0.90
41 7 0.10
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:60741873 original size:46 final size:46
Alignment explanation
Indices: 60741817--60741987 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
60741807 TGGTTGAGCA
60741817 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60741863 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * **
60741908 CATCTGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60741956 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
60741988 CAGGGGCGGG
Statistics
Matches: 99, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.57
47 27 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60741973 original size:93 final size:93
Alignment explanation
Indices: 60741814--60741984 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
60741804 GGATGGTTGA
*** *
60741814 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
60741879 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
60741907 GCATCTGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
60741972 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60741985 ACTCAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60744205 original size:2 final size:2
Alignment explanation
Indices: 60744198--60744222 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60744188 AACACATGTG
60744198 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
60744223 CAAAATAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60745907 original size:27 final size:27
Alignment explanation
Indices: 60745873--60745924 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
60745863 GAATGTAGAA
*
60745873 ATTATTTAATTAATTAAATTTCAAATT
1 ATTATTTAATTAATTAAAGTTCAAATT
60745900 ATTATTTAATTAATTAAAGTTCAAA
1 ATTATTTAATTAATTAAAGTTCAAA
60745925 AATGGAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (27 bp):
ATTATTTAATTAATTAAAGTTCAAATT
Found at i:60745935 original size:27 final size:27
Alignment explanation
Indices: 60745878--60745940 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
60745868 TAGAAATTAT
* * * *
60745878 TTAATTAATTAAATTTCAAATTATTAT
1 TTAATTAATTAAAGTTCAAATAATGAA
60745905 TTAATTAATTAAAGTTCAAA-AATGGAA
1 TTAATTAATTAAAGTTCAAATAAT-GAA
60745932 TTAAATTAA
1 TT-AATTAA
60745941 CTGATCATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.07
27 22 0.73
28 6 0.20
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (27 bp):
TTAATTAATTAAAGTTCAAATAATGAA
Found at i:60752450 original size:34 final size:34
Alignment explanation
Indices: 60752409--60752479 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
60752399 AAGCTCCAGT
*
60752409 GTTAGTTTAGCCAGAATCGAGTAAGGAATTTATA
1 GTTAGTTTAGCAAGAATCGAGTAAGGAATTTATA
60752443 GTTAGTTTAGCAAGAATCGAGTAAGGAATTTATA
1 GTTAGTTTAGCAAGAATCGAGTAAGGAATTTATA
60752477 GTT
1 GTT
60752480 TACAGTGATG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.34
Consensus pattern (34 bp):
GTTAGTTTAGCAAGAATCGAGTAAGGAATTTATA
Found at i:60754029 original size:41 final size:41
Alignment explanation
Indices: 60753972--60754053 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
60753962 AGGATTCATA
*
60753972 ATGTTTTTCATGTGTCTATGCTACGACGGTACCAATCTGAT
1 ATGTTTTTCATGTGTCTATGCTACGACAGTACCAATCTGAT
60754013 ATGTTTTTCATGTGTCTATGCTACGACAGTACCAATCTGAT
1 ATGTTTTTCATGTGTCTATGCTACGACAGTACCAATCTGAT
60754054 CCTTCACACG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (41 bp):
ATGTTTTTCATGTGTCTATGCTACGACAGTACCAATCTGAT
Found at i:60762963 original size:68 final size:67
Alignment explanation
Indices: 60762886--60763035 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
60762876 CATCATGTGT
* * * * *
60762886 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAAGTCGCATGCGTGGATACAAGTGAAGGACACC
60762948 ATGTAG
62 ATGTAG
* * *
60762954 ACAAGAGAGCTACGAGATATATGTAGCTAAGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAAGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
60763019 AG
66 AG
60763021 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
60763036 GATAAACTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 19 0.27
65 7 0.10
66 5 0.07
67 27 0.38
68 13 0.18
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAAGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:60767445 original size:8 final size:8
Alignment explanation
Indices: 60767428--60767479 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
60767418 ATGTATCGGC
60767428 AAAAGCCG
1 AAAAGCCG
*
60767436 AAATGCCG
1 AAAAGCCG
**
60767444 AAAAGCTA
1 AAAAGCCG
*
60767452 AAAAGCTG
1 AAAAGCCG
*
60767460 AAATGCCG
1 AAAAGCCG
60767468 AAAAGCC-
1 AAAAGCCG
60767475 AAAAG
1 AAAAG
60767480 TTTGGCTACG
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
7 5 0.14
8 31 0.86
ACGTcount: A:0.52, C:0.19, G:0.21, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:60767462 original size:24 final size:24
Alignment explanation
Indices: 60767428--60767478 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
60767418 ATGTATCGGC
*
60767428 AAAAGCCGAAATGCCGAAAAGCTA
1 AAAAGCCGAAATGCCGAAAAGCCA
*
60767452 AAAAGCTGAAATGCCGAAAAGCCA
1 AAAAGCCGAAATGCCGAAAAGCCA
60767476 AAA
1 AAA
60767479 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.20, G:0.20, T:0.08
Consensus pattern (24 bp):
AAAAGCCGAAATGCCGAAAAGCCA
Found at i:60767744 original size:29 final size:29
Alignment explanation
Indices: 60767689--60767775 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
60767679 GTGAGCATGA
* * *
60767689 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
60767717 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
60767746 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
60767775 A
1 A
60767776 GATACAGGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 11 0.21
29 42 0.79
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:60767780 original size:29 final size:29
Alignment explanation
Indices: 60767702--60767784 Score: 130
Period size: 29 Copynumber: 2.9 Consensus size: 29
60767692 TGAATGTGAC
* * *
60767702 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATACAGGTGATT
60767731 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATACAGGTGATT
*
60767760 TGGGCCTAATGGGCCAGATACAGGT
1 TGGGCCTAATGGGCCATATACAGGT
60767785 ATGTGAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACAGGTGATT
Found at i:60770179 original size:79 final size:81
Alignment explanation
Indices: 60770078--60770262 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
60770068 ACGACTCGCT
* ** * * *
60770078 CAAATGCCTTTGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTT-AGGATCCTAACCC
* *
60770141 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
60770158 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTAGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTAGGATCCTAACCCGG
*
60770222 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
60770238 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60770263 CATCATTCGA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTAGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:60770192 original size:39 final size:40
Alignment explanation
Indices: 60770078--60770262 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
60770068 ACGACTCGCT
* ** * *
60770078 CAAATGCCTTTGGGACGAAGCCCGG-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
60770118 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
60770158 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * * *
60770197 CGAATGCCTT-AGGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
60770238 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60770263 CATCATTCGA
Statistics
Matches: 116, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.26
40 73 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:60772416 original size:15 final size:15
Alignment explanation
Indices: 60772391--60772430 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
60772381 TCTAAGTTTT
60772391 TATAGTATTATGTTATA
1 TATA-TATTAT-TTATA
60772408 T-TATATTATTTATA
1 TATATATTATTTATA
60772422 TATATATTA
1 TATATATTA
60772431 AATAATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 13 0.59
16 2 0.09
17 1 0.05
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TATATATTATTTATA
Found at i:60772429 original size:20 final size:20
Alignment explanation
Indices: 60772404--60772441 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60772394 AGTATTATGT
* *
60772404 TATATTATATTATTTATATA
1 TATATTAAATAATTTATATA
60772424 TATATTAAATAATTTATA
1 TATATTAAATAATTTATA
60772442 AAGATTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TATATTAAATAATTTATATA
Found at i:60774804 original size:27 final size:27
Alignment explanation
Indices: 60774466--60774803 Score: 401
Period size: 27 Copynumber: 12.5 Consensus size: 27
60774456 AGTACTCCCT
60774466 ATTTACAGAATTACCGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
* * *
60774492 AGGTTATAGAATTACTGTTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
** * *
60774520 ATTTGTAAAATTACCGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
60774547 ATTTATAGAATTACCGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
* **
60774573 AGTTTATAGAATTACTATTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* *
60774601 ATTTACAGAATTACCGTTTTACCCCCA
1 ATTTACAGAATTACCGTTTTACCCTCG
* * *
60774628 ATTTACATAATTACCATTTTACCCCCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
60774655 ATTTACATAATTATCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
60774682 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
60774709 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* ** **
60774736 ATTTATAGAATTACAATTTTACCCTTA
1 ATTTACAGAATTACCGTTTTACCCTCG
*
60774763 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
60774790 ATTTACAAAATTAC
1 ATTTACAGAATTAC
60774804 TAAAATACCC
Statistics
Matches: 271, Mismatches: 37, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 267 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Found at i:60776074 original size:25 final size:25
Alignment explanation
Indices: 60776045--60776092 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60776035 TTATAATATG
* * *
60776045 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
60776070 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
60776093 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:60776161 original size:20 final size:20
Alignment explanation
Indices: 60776136--60776194 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
60776126 TAAATATGGT
60776136 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
60776156 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
60776176 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
60776195 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:60776314 original size:47 final size:48
Alignment explanation
Indices: 60776245--60776363 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
60776235 GAGGAAGTGA
60776245 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
60776292 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
60776340 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
60776364 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 1 0.02
47 43 0.65
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:60776339 original size:24 final size:24
Alignment explanation
Indices: 60776245--60776363 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
60776235 GAGGAAGTGA
*
60776245 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
60776269 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
60776292 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
60776316 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
60776340 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
60776364 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:60776590 original size:31 final size:31
Alignment explanation
Indices: 60776555--60776618 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
60776545 CGTTTACAGT
60776555 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
60776586 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60776617 AA
1 AA
60776619 CATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:60776624 original size:38 final size:38
Alignment explanation
Indices: 60776572--60776679 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
60776562 TCGGCCCAGT
60776572 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
60776610 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
60776648 GATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
60776680 GCATGATTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 52 0.80
39 13 0.20
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:60779142 original size:99 final size:96
Alignment explanation
Indices: 60778968--60779184 Score: 267
Period size: 99 Copynumber: 2.2 Consensus size: 96
60778958 ATCATTATCA
* * * *
60778968 TAATATTTTTA-TCTAACTAAATTCTCAAGAAGTAGAGATTCCCAAGTTTATACATCATCTTGAA
1 TAATATTTTTATTTTAACTAAATTATCAAGAAGTAGAGATTCCCAAGTTTATACATAAGCTTGAA
* *
60779032 AACAAGATTTTTTGTT-GTTTGTTTAGTATTAC
66 AACAAGATTTTTT-TTCCTTTG-ATAGTATTAC
* * * * *
60779064 TATACTATTTTTATTTTAACCAAATTATGAAGAAGTAGATATTCCTAAGTTTATACTTAAGCTTG
1 TA-A-TATTTTTATTTTAACTAAATTATCAAGAAGTAGAGATTCCCAAGTTTATACATAAGCTTG
*
60779129 AAAACAAGATTTTTTTTCCTTTGATATTATTAC
64 AAAACAAGATTTTTTTTCCTTTGATAGTATTAC
*
60779162 TAATACTTTTATTTTAACTAAAT
1 TAATATTTTTATTTTAACTAAAT
60779185 ACTTTCATTT
Statistics
Matches: 103, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
96 20 0.19
97 2 0.02
98 20 0.19
99 61 0.59
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.45
Consensus pattern (96 bp):
TAATATTTTTATTTTAACTAAATTATCAAGAAGTAGAGATTCCCAAGTTTATACATAAGCTTGAA
AACAAGATTTTTTTTCCTTTGATAGTATTAC
Found at i:60788816 original size:9 final size:9
Alignment explanation
Indices: 60788802--60788833 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
60788792 TATGTAACGC
60788802 CCCAAAAAT
1 CCCAAAAAT
60788811 CCC-AAAA-
1 CCCAAAAAT
60788818 CCCAAAAAT
1 CCCAAAAAT
60788827 CCCAAAA
1 CCCAAAA
60788834 TCCTGAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 3 0.14
8 8 0.38
9 10 0.48
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (9 bp):
CCCAAAAAT
Found at i:60788823 original size:16 final size:16
Alignment explanation
Indices: 60788802--60788833 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
60788792 TATGTAACGC
60788802 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
60788818 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
60788834 TCCTGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCAAAA
Found at i:60790346 original size:19 final size:19
Alignment explanation
Indices: 60790322--60790370 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
60790312 TCAATAGGTC
60790322 AAATGGGCCAGCACGAGCT
1 AAATGGGCCAGCACGAGCT
60790341 AAATGGGCCAGCACGAGCT
1 AAATGGGCCAGCACGAGCT
60790360 AAATGGGCCAG
1 AAATGGGCCAG
60790371 ATGGGCTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.33, C:0.24, G:0.33, T:0.10
Consensus pattern (19 bp):
AAATGGGCCAGCACGAGCT
Found at i:60790498 original size:28 final size:28
Alignment explanation
Indices: 60790467--60790589 Score: 126
Period size: 28 Copynumber: 4.4 Consensus size: 28
60790457 TTTGGGCTGG
*
60790467 ATGGGCCATATAAATGAGATTAGGCCTA
1 ATGGGCCATATAAATGAGATTGGGCCTA
*
60790495 ATGGGCCATATAAATGTGAATTGGGCCTA
1 ATGGGCCATATAAATGAG-ATTGGGCCTA
* **
60790524 ATGGGCCATAAGAAAT-A-AACGGGCC-A
1 ATGGGCCAT-ATAAATGAGATTGGGCCTA
* *
60790550 GATGGGCCATATGAATGAGATTGGGCCTT
1 -ATGGGCCATATAAATGAGATTGGGCCTA
*
60790579 GTGGGCCATAT
1 ATGGGCCATAT
60790590 GCATGTATGT
Statistics
Matches: 77, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
26 5 0.06
27 16 0.21
28 33 0.43
29 18 0.23
30 5 0.06
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (28 bp):
ATGGGCCATATAAATGAGATTGGGCCTA
Found at i:60804952 original size:46 final size:46
Alignment explanation
Indices: 60804808--60805114 Score: 234
Period size: 46 Copynumber: 6.5 Consensus size: 46
60804798 TTTGTGTGCT
* *
60804808 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * *
60804854 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
**
60804902 AGTGTAAGACATGTTTGGGACATATATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * *
60804948 AGTGTAAGACATGTTTGGGACATGCATTGG-CTACGAGAT--GTGTC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * * *
60804992 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTGAGAGCT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGA--TGAGAGCC
* * * *
60805042 GGTGTAAGACCAT-TTCTGGGGACATAGCATC-GACTTGATA-GATGAGCC
1 AGTGTAAGA-CATGTT-T-GGGACAT-GCATCGGCCTCGAGATGA-GAGCC
*
60805090 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTTTGGGACATG
60805115 GCATTGGCAT
Statistics
Matches: 210, Mismatches: 34, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 68 0.32
47 37 0.18
48 43 0.20
49 3 0.01
50 21 0.10
51 12 0.06
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:60805051 original size:50 final size:48
Alignment explanation
Indices: 60804991--60805124 Score: 155
Period size: 50 Copynumber: 2.8 Consensus size: 48
60804981 CGAGATGTGT
60804991 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATG-TGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATA-GAT--GAGC
** * * * *
60805041 TGGTGTAAGACCATTTCTGGGGACATAGCATCGAC-TTGATAGATGAGC
1 CAGTGTAAGACCATGTCT-GGGACATGGCATCGGCATGGATAGATGAGC
*
60805089 CAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
60805125 TATACCCTAT
Statistics
Matches: 69, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
47 13 0.19
48 20 0.29
49 1 0.01
50 21 0.30
51 14 0.20
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATAGATGAGC
Found at i:60817074 original size:27 final size:27
Alignment explanation
Indices: 60817035--60817103 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
60817025 ATGGTGGTCT
**
60817035 TTGGGCCTTAGCCCAAATTAGCCTCGG
1 TTGGGCCAAAGCCCAAATTAGCCTCGG
60817062 TTGGGCCAAAGCCCAAATTAGCCTCGG
1 TTGGGCCAAAGCCCAAATTAGCCTCGG
60817089 TTGGGCCAAAGCCCA
1 TTGGGCCAAAGCCCA
60817104 CATCGCAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (27 bp):
TTGGGCCAAAGCCCAAATTAGCCTCGG
Found at i:60817984 original size:16 final size:16
Alignment explanation
Indices: 60817943--60817985 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
60817933 GTAGTCAAAC
60817943 TTTCGGCTTTTCGACA
1 TTTCGGCTTTTCGACA
* *
60817959 TTTCGACTTTTCGGCA
1 TTTCGGCTTTTCGACA
*
60817975 TTTTGGCTTTT
1 TTTCGGCTTTT
60817986 GCCGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.21, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:60828106 original size:27 final size:27
Alignment explanation
Indices: 60828076--60828137 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60828066 GGGCAAAATG
60828076 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
60828103 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
60828130 GTAATTTT
1 GTAATTTT
60828138 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:60828151 original size:54 final size:54
Alignment explanation
Indices: 60828093--60828243 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 54
60828083 TACCCCACAA
** * * *
60828093 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** *
60828147 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
60828201 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
60828244 CTGTAAATTG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.02
54 83 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:60828209 original size:81 final size:81
Alignment explanation
Indices: 60828091--60828243 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
60828081 TTTACCCCAC
** *
60828091 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAAGGGTATTT
60828155 TGGTAATTTTATAAACA
65 TGGTAATTTTATAAACA
* * *
60828172 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAA-CAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
60828236 TGGTAATT
65 TGGTAATT
60828244 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:60828250 original size:27 final size:27
Alignment explanation
Indices: 60828120--60828243 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
60828110 TACCCTACAG
* *
60828120 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
60828147 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
60828174 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
60828201 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
60828228 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
60828244 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:60828257 original size:27 final size:27
Alignment explanation
Indices: 60828227--60828297 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
60828217 TTATAAACCA
* *
60828227 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
60828254 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
60828281 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
60828298 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:60828259 original size:54 final size:54
Alignment explanation
Indices: 60828120--60828243 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
60828110 TACCCTACAG
* *
60828120 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
60828174 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
60828228 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
60828244 CTGTAAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:60828269 original size:81 final size:81
Alignment explanation
Indices: 60828117--60828270 Score: 175
Period size: 81 Copynumber: 1.9 Consensus size: 81
60828107 TTTTACCCTA
* * ***
60828117 CAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
1 CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
*
60828182 TAGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* * * ***
60828198 CAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATTTTGGTAATTCTGTAAATTGAGGGTAAA
1 CAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAA
*
60828262 ACGGTAATT
65 ACAGTAATT
60828271 CTGTAAATCG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
81 58 0.98
82 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
CAGTAATTTTACAAAC
Found at i:60832196 original size:27 final size:27
Alignment explanation
Indices: 60832166--60832227 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60832156 GGGCAAAATG
60832166 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
60832193 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
60832220 GTAATTTT
1 GTAATTTT
60832228 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:60832241 original size:54 final size:54
Alignment explanation
Indices: 60832183--60832333 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 54
60832173 TACCCCACAA
** * * *
60832183 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** *
60832237 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
60832291 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
60832334 CTGTAAATTG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.02
54 83 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:60832299 original size:81 final size:81
Alignment explanation
Indices: 60832181--60832333 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
60832171 TTTACCCCAC
** *
60832181 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAAGGGTATTT
60832245 TGGTAATTTTATAAACA
65 TGGTAATTTTATAAACA
* * *
60832262 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAA-CAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
60832326 TGGTAATT
65 TGGTAATT
60832334 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:60832340 original size:27 final size:27
Alignment explanation
Indices: 60832210--60832333 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
60832200 TACCCTACAG
* *
60832210 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
60832237 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
60832264 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
60832291 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
60832318 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
60832334 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:60832349 original size:54 final size:54
Alignment explanation
Indices: 60832210--60832333 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
60832200 TACCCTACAG
* *
60832210 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
60832264 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
60832318 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
60832334 CTGTAAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Done.