Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 211 of 345
Found at i:60832359 original size:81 final size:81
Alignment explanation
Indices: 60832207--60832360 Score: 175
Period size: 81 Copynumber: 1.9 Consensus size: 81
60832197 TTTTACCCTA
* * ***
60832207 CAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
1 CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
*
60832272 TAGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* * * ***
60832288 CAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATTTTGGTAATTCTGTAAATTGAGGGTAAA
1 CAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAA
*
60832352 ACGGTAATT
65 ACAGTAATT
60832361 CTATAAATCG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
81 58 0.98
82 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
CAGTAATTTTACAAAC
Found at i:60835369 original size:19 final size:19
Alignment explanation
Indices: 60835345--60835383 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
60835335 AAGGAATAAT
*
60835345 ATATATAGTAAAATATATA
1 ATATATACTAAAATATATA
*
60835364 ATATATACTAAAATTTATA
1 ATATATACTAAAATATATA
60835383 A
1 A
60835384 ATAAAATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (19 bp):
ATATATACTAAAATATATA
Found at i:60835403 original size:21 final size:20
Alignment explanation
Indices: 60835379--60835444 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 20
60835369 TACTAAAATT
*
60835379 TATAAATAAAATGTATAATAA
1 TATAAATAAAATGAATAAT-A
60835400 TATAAATAATATAATGAATAATA
1 TATAAAT-A-A-AATGAATAATA
60835423 TATAAATAAAA--AATAATA
1 TATAAATAAAATGAATAATA
60835441 TATA
1 TATA
60835445 CTATTTTATA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
18 11 0.27
20 2 0.05
21 8 0.20
22 2 0.05
23 9 0.22
24 9 0.22
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (20 bp):
TATAAATAAAATGAATAATA
Found at i:60837097 original size:27 final size:27
Alignment explanation
Indices: 60837067--60837490 Score: 531
Period size: 27 Copynumber: 15.7 Consensus size: 27
60837057 CCCGACTTAT
60837067 AGAATTACCGTTTTACCCTCAGTTTAC
1 AGAATTACCGTTTTACCCTCAGTTTAC
60837094 AGAATTACCGTTTTACCCTC-GATTTAC
1 AGAATTACCGTTTTACCCTCAG-TTTAC
60837121 AGAATTACCGTTTTACCCTCAGTTTAC
1 AGAATTACCGTTTTACCCTCAGTTTAC
* ** *
60837148 ACAATTATTGTTTTACCCT-TGATTTAC
1 AGAATTACCGTTTTACCCTCAG-TTTAC
*
60837175 AGAATTATCGTTTTACCCTCAGTTTAC
1 AGAATTACCGTTTTACCCTCAGTTTAC
60837202 AGAATTACCGTTTTACCCTCAGTTTAC
1 AGAATTACCGTTTTACCCTCAGTTTAC
*
60837229 AGAATTATCGTTTTACCCTC-GATTTAC
1 AGAATTACCGTTTTACCCTCAG-TTTAC
*
60837256 AGAATTACTGTTTTACCCTCAGTTTAC
1 AGAATTACCGTTTTACCCTCAGTTTAC
** *
60837283 AGAATTACTATTTTACCCTCAATTTAC
1 AGAATTACCGTTTTACCCTCAGTTTAC
60837310 AGAATTACCGTTTTACCCTCAGTTTAC
1 AGAATTACCGTTTTACCCTCAGTTTAC
* *
60837337 AAAATTACTGTTTTACCCTC-GATTTAC
1 AGAATTACCGTTTTACCCTCAG-TTTAC
* *
60837364 AGAATTACCGTTGTACCCTCGATTTGTA-
1 AGAATTACCGTTTTACCCTC-AGTT-TAC
*
60837392 A-AATTACCGTTTTACCCT-TGATTTAC
1 AGAATTACCGTTTTACCCTCAG-TTTAC
* ** *
60837418 AAAATTAATGGTTTACCCTCAGTTTAC
1 AGAATTACCGTTTTACCCTCAGTTTAC
* *
60837445 AAAATTATCGTTTTACCCTC-GATTTAC
1 AGAATTACCGTTTTACCCTCAG-TTTAC
60837472 AGAATTACCGTTTTACCCT
1 AGAATTACCGTTTTACCCT
60837491 TGATTGTGAA
Statistics
Matches: 348, Mismatches: 34, Indels: 30
0.84 0.08 0.07
Matches are distributed among these distances:
25 2 0.01
26 8 0.02
27 329 0.95
28 7 0.02
29 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.39
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCAGTTTAC
Found at i:60837537 original size:27 final size:27
Alignment explanation
Indices: 60837500--60837695 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
60837490 TTGATTGTGA
*
60837500 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
60837527 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** *
60837554 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* **
60837581 AATTACTGAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
60837608 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
60837635 AAATACCGAAACACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
60837662 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
60837689 AATTACC
1 AATTACC
60837696 ATTTTGCCCC
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:60837569 original size:54 final size:54
Alignment explanation
Indices: 60837500--60837695 Score: 259
Period size: 54 Copynumber: 3.6 Consensus size: 54
60837490 TTGATTGTGA
* *
60837500 AATTACTGAAATACCCTTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
60837554 AATTACTAAAATACCCTTATAGGGTAGAATTACTGAAATACCCCCGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
60837608 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAACACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
60837662 AATTACCGAGATACCTTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
60837696 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.99
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:60837932 original size:27 final size:26
Alignment explanation
Indices: 60837894--60837976 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
60837884 CGGAGGAAGC
60837894 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
60837921 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* *
60837947 GTATCTGGTGACTATGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
60837974 GTT
1 GTT
60837977 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:60838096 original size:22 final size:22
Alignment explanation
Indices: 60838064--60838122 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
60838054 CCCGTTATTA
*
60838064 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
60838086 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
60838108 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
60838123 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:60838333 original size:27 final size:27
Alignment explanation
Indices: 60838287--60838359 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
60838277 TAGGTGGGTT
* *
60838287 TGCCACATTATCTG-ATTCTGATGGCTC
1 TGCCACAATATCTGTA-TCTGATGACTC
*
60838314 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGATGACTC
* *
60838341 TGTCACGATATCTGT-TCTG
1 TGCCACAATATCTGTATCTG
60838360 GCAACCATGC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 4 0.10
27 35 0.88
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGATGACTC
Found at i:60838487 original size:6 final size:6
Alignment explanation
Indices: 60838478--60838579 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
60838468 TTGCATTCAC
* * *
60838478 ATTCTG ATTCTG ATTCTG -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
60838527 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCT- ATTATTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
60838575 ATTCT
1 ATTCT
60838580 CATTTTGGTT
Statistics
Matches: 77, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
5 7 0.09
6 62 0.81
7 6 0.08
8 2 0.03
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:60838540 original size:30 final size:30
Alignment explanation
Indices: 60838478--60838579 Score: 135
Period size: 30 Copynumber: 3.6 Consensus size: 30
60838468 TTGCATTCAC
* *
60838478 ATTCTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTTA-CTAATATTG
60838509 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATATTG
60838539 ATTCTGATTCTGATTC---TA-T--TATTG
1 ATTCTGATTCTGATTCTGTTACTAATATTG
60838563 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
60838580 CATTTTGGTT
Statistics
Matches: 68, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
24 21 0.31
26 1 0.01
27 2 0.03
30 24 0.35
31 20 0.29
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.51
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATATTG
Found at i:60838545 original size:24 final size:24
Alignment explanation
Indices: 60838513--60838579 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
60838503 ATTTTGATTC
60838513 TGATTCTGATTCTG-TTACTAATAT
1 TGATTCTGATTCTGATT-CTAATAT
*
60838537 TGATTCTGATTCTGATTCTATTAT
1 TGATTCTGATTCTGATTCTAATAT
60838561 TGATTCTGATTCTGATTCT
1 TGATTCTGATTCTGATTCT
60838580 CATTTTGGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
24 39 0.95
25 2 0.05
ACGTcount: A:0.21, C:0.13, G:0.13, T:0.52
Consensus pattern (24 bp):
TGATTCTGATTCTGATTCTAATAT
Found at i:60838596 original size:24 final size:24
Alignment explanation
Indices: 60838521--60838600 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
60838511 TCTGATTCTG
* **
60838521 ATTCTG-TTACTAATATTGATTCTG
1 ATTCTGATT-CTATTATTGATTCCA
**
60838545 ATTCTGATTCTATTATTGATTCTG
1 ATTCTGATTCTATTATTGATTCCA
*
60838569 ATTCTGATTCTCATT-TTGGTTCCA
1 ATTCTGATTCT-ATTATTGATTCCA
60838593 ATTCTGAT
1 ATTCTGAT
60838601 AATGTTTCTT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
24 45 0.90
25 5 0.10
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.51
Consensus pattern (24 bp):
ATTCTGATTCTATTATTGATTCCA
Found at i:60840635 original size:124 final size:124
Alignment explanation
Indices: 60840413--60840637 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
60840403 GAATTATGTG
* * ** * * *
60840413 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
60840478 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
60840537 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
60840602 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
60840638 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:60840759 original size:40 final size:40
Alignment explanation
Indices: 60840632--60840761 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60840622 ATGCTGGAAA
* *
60840632 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
60840672 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
60840712 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60840752 TTATATCCGG
1 TTATATCCGG
60840762 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:60840760 original size:80 final size:80
Alignment explanation
Indices: 60840594--60840761 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
60840584 CAATTGAATG
* * *
60840594 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
60840659 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
60840674 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
60840738 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
60840754 ATATCCGG
1 ATATCCGG
60840762 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:60847314 original size:40 final size:40
Alignment explanation
Indices: 60847269--60847398 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60847259 CGGAATACAA
60847269 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
60847309 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
60847349 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
60847389 CCGGATATAA
1 CCGGATATAA
60847399 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:60847413 original size:40 final size:40
Alignment explanation
Indices: 60847269--60847432 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
60847259 CGGAATACAA
* **
60847269 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
60847309 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
60847349 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
60847389 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
60847429 CCGG
1 CCGG
60847433 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:60851925 original size:124 final size:124
Alignment explanation
Indices: 60851703--60851927 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
60851693 GAATTATGTG
* * ** * * *
60851703 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
60851768 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
60851827 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
60851892 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
60851928 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:60852049 original size:40 final size:40
Alignment explanation
Indices: 60851922--60852051 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60851912 ATGCTGGAAA
* *
60851922 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
60851962 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
60852002 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60852042 TTATATCCGG
1 TTATATCCGG
60852052 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:60852050 original size:80 final size:80
Alignment explanation
Indices: 60851884--60852051 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
60851874 CAATTGAATG
* * *
60851884 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
60851949 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
60851964 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
60852028 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
60852044 ATATCCGG
1 ATATCCGG
60852052 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:60854400 original size:9 final size:9
Alignment explanation
Indices: 60854386--60854425 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
60854376 TTTATTTTAA
60854386 TTTTTTATT
1 TTTTTTATT
60854395 TTTTTTATT
1 TTTTTTATT
*
60854404 TTTATTATAT
1 TTTTTTAT-T
*
60854414 TTATTTATT
1 TTTTTTATT
60854423 TTT
1 TTT
60854426 ACGGGCACGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
9 19 0.73
10 7 0.27
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTATT
Found at i:60854686 original size:44 final size:44
Alignment explanation
Indices: 60854634--60855141 Score: 624
Period size: 44 Copynumber: 11.5 Consensus size: 44
60854624 ACTCAAGAAT
* * *
60854634 GCCAAATCTGTTATCTCCGACCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* ** * * * * *
60854678 ACTGAATCTGCTACCTTTGATCTGCTCTTTGACAACACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
60854722 ACCAAATCTGTTATCTTCGATCTACTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
60854766 GCCAAAT-TCGCTATCTTTGATCTACTCTCTGAAAATACAGAGAC
1 GCCAAATCT-GCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
60854810 GCCAAATCTGCTATCTTCTATCTACTCTCT-ACCAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGA-CAATACAGAGAC
* * *
60854854 GCCAAATCCGCTATTCTTCGATCTGCTCTCTGACAATACAAAGAT
1 GCCAAATCTGCTA-TCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
60854899 GCCAAATCTGTTCTCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
60854943 GCCAAATCTGCTATCTTCGATCTGCTTTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
60854987 GTCAAATTTGCTATCTTCGATCTGCTCTCTGACAATACTGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
60855031 ACCAAATCTGTTCTCTTCGATCTGCTCTCTGACAATATAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
** * *
60855075 GCCAAATCTATTCTCTTCGATCTGCTCTCTGACGATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
60855119 GCCAAATCTACTATCTTCGATCT
1 GCCAAATCTGCTATCTTCGATCT
60855142 TAAAGGACAT
Statistics
Matches: 402, Mismatches: 57, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
43 2 0.00
44 362 0.90
45 37 0.09
46 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
Found at i:60866785 original size:7 final size:7
Alignment explanation
Indices: 60866773--60866808 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
60866763 TTCTTATATC
60866773 TAATAAA
1 TAATAAA
60866780 TAATAAA
1 TAATAAA
60866787 TAATGAAA
1 TAAT-AAA
*
60866795 TAATATA
1 TAATAAA
60866802 TAATAAA
1 TAATAAA
60866809 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:60866797 original size:15 final size:14
Alignment explanation
Indices: 60866773--60866808 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
60866763 TTCTTATATC
60866773 TAATAAATAATAAA
1 TAATAAATAATAAA
*
60866787 TAATGAAATAATATA
1 TAAT-AAATAATAAA
60866802 TAATAAA
1 TAATAAA
60866809 AGGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:60867111 original size:18 final size:19
Alignment explanation
Indices: 60867075--60867124 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
60867065 AAAAATGTAC
**
60867075 AATAATATAATGAATATAATG
1 AATAATAT-AT-AATATAAAA
60867096 AATAATATATAA-ATAAAA
1 AATAATATATAATATAAAA
60867114 AATAATATATA
1 AATAATATATA
60867125 CTATTTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 15 0.56
19 2 0.07
20 2 0.07
21 8 0.30
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (19 bp):
AATAATATATAATATAAAA
Found at i:60868954 original size:40 final size:40
Alignment explanation
Indices: 60868909--60869076 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
60868899 CGGAATATAA
60868909 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60868949 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60868989 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60869029 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
60869069 CCGGATAT
1 CCGGATAT
60869077 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60869059 original size:80 final size:80
Alignment explanation
Indices: 60868925--60869074 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
60868915 ATAATCACGT
*
60868925 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
60868989 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
60869005 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
60869068 CCCGGAT
64 CCCGGAT
60869075 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:60877450 original size:28 final size:27
Alignment explanation
Indices: 60877400--60877452 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
60877390 CCGAGCCTAG
* *
60877400 GGGCAAAAGTGTAATTATGAAAGTTTA
1 GGGCAAAAATGTAATTATCAAAGTTTA
*
60877427 GGGCAAAAATGTAATTTTCCAAAGTT
1 GGGCAAAAATGTAATTAT-CAAAGTT
60877453 CGTATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GGGCAAAAATGTAATTATCAAAGTTTA
Found at i:60879630 original size:14 final size:15
Alignment explanation
Indices: 60879611--60879640 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
60879601 CACAACCTCC
60879611 CCACCTCCCC-GATT
1 CCACCTCCCCTGATT
60879625 CCACCTCCCCTGATT
1 CCACCTCCCCTGATT
60879640 C
1 C
60879641 TCAACCTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.13, C:0.57, G:0.07, T:0.23
Consensus pattern (15 bp):
CCACCTCCCCTGATT
Found at i:60894712 original size:45 final size:45
Alignment explanation
Indices: 60894648--60894825 Score: 275
Period size: 45 Copynumber: 4.0 Consensus size: 45
60894638 CGTACAGTAT
60894648 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
** * *
60894693 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCTGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* **
60894738 TATTCGGGCCTTTGATCCTAGCAGGCTACAATGCCAATGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* *
60894783 TATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAAT
60894826 GATACCGGAC
Statistics
Matches: 117, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 117 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
Found at i:60894864 original size:42 final size:42
Alignment explanation
Indices: 60894797--60894905 Score: 132
Period size: 41 Copynumber: 2.6 Consensus size: 42
60894787 TGGGCCTTTG
*
60894797 AGCCTAGCAGGCTATAATGCCGGTGAAATGATAC-CGGACTTCA
1 AGCCTAGCAGGCTA-AATGCCGGTGAAATGA-ACTCGGACTTAA
* * **
60894840 GGCCTAGCAGGCGAAATGCCGGTG-AATGAACTCGGGTTTAA
1 AGCCTAGCAGGCTAAATGCCGGTGAAATGAACTCGGACTTAA
*
60894881 AACCTAGCAGGCTAAATGCCGGTGA
1 AGCCTAGCAGGCTAAATGCCGGTGA
60894906 TTTGATAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
40 2 0.04
41 32 0.57
42 10 0.18
43 12 0.21
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.19
Consensus pattern (42 bp):
AGCCTAGCAGGCTAAATGCCGGTGAAATGAACTCGGACTTAA
Found at i:60898788 original size:30 final size:30
Alignment explanation
Indices: 60898753--60898809 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
60898743 TAACTCAAAA
60898753 TTTTGCAAAATTACAATTTTGCCCCTAAAC
1 TTTTGCAAAATTACAATTTTGCCCCTAAAC
* * *
60898783 TTTTGCATATTTACACTTTTGCCCCTA
1 TTTTGCAAAATTACAATTTTGCCCCTA
60898810 GGCTCGAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.42
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCTAAAC
Found at i:60912769 original size:40 final size:39
Alignment explanation
Indices: 60912725--60912867 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
60912715 GTTCAAAACA
* * ** * *
60912725 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
60912765 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
60912805 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
60912844 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
60912868 CTCGAACATT
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:60920879 original size:39 final size:40
Alignment explanation
Indices: 60920795--60920908 Score: 187
Period size: 39 Copynumber: 2.9 Consensus size: 40
60920785 TATGGTAACC
* *
60920795 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTT
60920836 -GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-TT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTT
60920874 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
60920909 TCGAACATTC
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
38 2 0.03
39 52 0.74
40 16 0.23
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (40 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTT
Found at i:60922863 original size:28 final size:29
Alignment explanation
Indices: 60922820--60922934 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
60922810 TACTTGTATC
** *
60922820 TGGCCCATTAAACCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
60922848 TAGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
60922877 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
** *
60922906 TGGCCTGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
60922934 T
1 T
60922935 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 25 0.34
29 47 0.64
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:60929325 original size:27 final size:28
Alignment explanation
Indices: 60929295--60929364 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
60929285 ATAGTGAATC
*
60929295 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
60929322 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
60929350 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60929365 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:60929436 original size:42 final size:42
Alignment explanation
Indices: 60929372--60929478 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
60929362 GCTGTACAAT
* *
60929372 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
60929414 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
60929456 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
60929479 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:60934878 original size:28 final size:28
Alignment explanation
Indices: 60934817--60934914 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
60934807 TCACAAATTG
** * *
60934817 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
60934846 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
60934874 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
60934902 GCACTAAGTGTGC
1 GCACTAAGTGTGC
60934915 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:60939069 original size:27 final size:28
Alignment explanation
Indices: 60939039--60939108 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
60939029 ATAGTGAATC
*
60939039 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
60939066 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
60939094 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60939109 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:60939180 original size:42 final size:42
Alignment explanation
Indices: 60939116--60939222 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
60939106 GCTGTACAAT
* *
60939116 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
60939158 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
60939200 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
60939223 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:60943106 original size:124 final size:124
Alignment explanation
Indices: 60942884--60943108 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
60942874 GAATTATGTG
* * * ** * * *
60942884 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
60942949 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
60943008 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
60943073 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
60943109 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:60943230 original size:40 final size:40
Alignment explanation
Indices: 60943103--60943232 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60943093 ATGCTGGAAA
* *
60943103 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
60943143 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
60943183 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60943223 TTATATCCGG
1 TTATATCCGG
60943233 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:60943231 original size:80 final size:80
Alignment explanation
Indices: 60943065--60943232 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
60943055 CAATTGAATG
* * *
60943065 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
60943130 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
60943145 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
60943209 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
60943225 ATATCCGG
1 ATATCCGG
60943233 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:60951147 original size:124 final size:124
Alignment explanation
Indices: 60950925--60951149 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
60950915 GAATTATGTG
* * * * * * *
60950925 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
60950990 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
60951049 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
60951114 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTATAT
60951150 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 1 0.01
124 87 0.99
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:60951271 original size:40 final size:40
Alignment explanation
Indices: 60951144--60951273 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60951134 ATGCTGGAAA
* *
60951144 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
60951184 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
60951224 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60951264 TTATATCCGG
1 TTATATCCGG
60951274 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:60951272 original size:80 final size:80
Alignment explanation
Indices: 60951106--60951273 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
60951096 CAATTGAATG
* * *
60951106 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
60951171 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
60951186 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
60951250 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
60951266 ATATCCGG
1 ATATCCGG
60951274 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:60954679 original size:39 final size:39
Alignment explanation
Indices: 60954625--60954787 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
60954615 TGTGAATGAA
60954625 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
60954664 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
60954703 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
60954742 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
60954782 TGTGCG
1 TGTGCG
60954788 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:60954803 original size:40 final size:39
Alignment explanation
Indices: 60954625--60954817 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
60954615 TGTGAATGAA
* *
60954625 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
60954664 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
60954703 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
60954742 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
60954782 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
60954818 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:60962520 original size:39 final size:39
Alignment explanation
Indices: 60962466--60962628 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
60962456 TGTGAATGAA
60962466 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
60962505 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
60962544 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
60962583 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
60962623 TGTGCG
1 TGTGCG
60962629 GGTTACCATA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:60970199 original size:27 final size:27
Alignment explanation
Indices: 60970168--60970249 Score: 86
Period size: 28 Copynumber: 3.2 Consensus size: 27
60970158 TGATGCGGTG
60970168 AATGAATATGTATGATTTTTGATGTTT
1 AATGAATATGTATGATTTTTGATGTTT
*
60970195 AATGATATAT-TATGAATATTTGATG---
1 AATGA-ATATGTATG-ATTTTTGATGTTT
*
60970220 --TGAATATGTATGATTTTTTATGTTT
1 AATGAATATGTATGATTTTTGATGTTT
60970245 AATGA
1 AATGA
60970250 TAGATTATGA
Statistics
Matches: 44, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
22 12 0.27
23 7 0.16
27 12 0.27
28 13 0.30
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (27 bp):
AATGAATATGTATGATTTTTGATGTTT
Found at i:60970244 original size:50 final size:50
Alignment explanation
Indices: 60970170--60970266 Score: 176
Period size: 50 Copynumber: 1.9 Consensus size: 50
60970160 ATGCGGTGAA
*
60970170 TGAATATGTATGATTTTTGATGTTTAATGATATATTATGAATATTTGATG
1 TGAATATGTATGATTTTTGATGTTTAATGATAGATTATGAATATTTGATG
*
60970220 TGAATATGTATGATTTTTTATGTTTAATGATAGATTATGAATATTTG
1 TGAATATGTATGATTTTTGATGTTTAATGATAGATTATGAATATTTG
60970267 GTGTTAGTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.51
Consensus pattern (50 bp):
TGAATATGTATGATTTTTGATGTTTAATGATAGATTATGAATATTTGATG
Found at i:60991729 original size:23 final size:23
Alignment explanation
Indices: 60991703--60991779 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 23
60991693 AGGCTACTAC
60991703 GTGTACCGGATAATTGGTCGCAT
1 GTGTACCGGATAATTGGTCGCAT
* *
60991726 GTGTA--GTACTAAGTGTAGGCTC-CTAC
1 GTGTACCGGA-TAA-T-T-GG-TCGC-AT
60991752 GTGTACCGGATAATTGGTCGCAT
1 GTGTACCGGATAATTGGTCGCAT
60991775 GTGTA
1 GTGTA
60991780 GTACTAAGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
21 2 0.05
22 3 0.07
23 14 0.34
24 4 0.10
25 4 0.10
26 9 0.22
27 3 0.07
28 2 0.05
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (23 bp):
GTGTACCGGATAATTGGTCGCAT
Found at i:60991807 original size:49 final size:49
Alignment explanation
Indices: 60991676--60991799 Score: 230
Period size: 49 Copynumber: 2.5 Consensus size: 49
60991666 TGTTACAACG
60991676 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* *
60991725 TGTGTAGTACTAAGTGTAGGCTCCTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
60991774 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
60991800 TGCGTACCAG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:60999385 original size:27 final size:28
Alignment explanation
Indices: 60999355--60999424 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
60999345 ATAGTGAATC
*
60999355 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
60999382 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
60999410 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60999425 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:61012360 original size:40 final size:40
Alignment explanation
Indices: 61012315--61012481 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61012305 CGGAATATAA
61012315 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61012355 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61012395 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61012435 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61012474 CCGGATAT
1 CCGGATAT
61012482 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61020380 original size:40 final size:40
Alignment explanation
Indices: 61020335--61020501 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61020325 CGGAATATAA
61020335 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61020375 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61020415 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61020455 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61020494 CCGGATAT
1 CCGGATAT
61020502 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61020706 original size:28 final size:28
Alignment explanation
Indices: 61020674--61020729 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
61020664 CACATCATAC
61020674 TTCATCTCACATAATTCAAGTAAGGTCA
1 TTCATCTCACATAATTCAAGTAAGGTCA
61020702 TTCATCTCACATAATTCAAGTAAGGTCA
1 TTCATCTCACATAATTCAAGTAAGGTCA
61020730 CTTCTTGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (28 bp):
TTCATCTCACATAATTCAAGTAAGGTCA
Found at i:61025074 original size:535 final size:536
Alignment explanation
Indices: 61022911--61026125 Score: 6198
Period size: 536 Copynumber: 6.0 Consensus size: 536
61022901 TTACCATTTC
*
61022911 TGTGACTCCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
1 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
61022976 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
66 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
61023041 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
131 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
61023106 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
196 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
61023171 AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
261 AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
*
61023236 GTGTGGGAAGAATAATAAAATATGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
326 GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
61023301 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
391 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
61023366 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
456 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
61023431 TATTATGTCAAATTGT
521 TATTATGTCAAATTGT
*
61023447 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCGTAAAA
1 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
*
61023512 ATAATTAGCCGTCATATTTTCTGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
66 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
*
61023577 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGGGACACTTTTGAAATGCGATAG
131 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
61023642 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
196 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
61023707 AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
261 AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
*
61023772 GTTTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
326 GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
* *
61023837 CCCCATTGCCGTGACTAGAGACAGGGGAGGGAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
391 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
61023902 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
456 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
61023967 TATTATGTCAAATTGT
521 TATTATGTCAAATTGT
* *
61023983 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTTGAGACCACAAAATCGAGTCATAAAA
1 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
*
61024048 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCCTC
66 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
61024113 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
131 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
61024178 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
196 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
*
61024243 AAAATCTAGATGGTGGCCGGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
261 AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
*
61024308 GTGTGGGAAGAATAATAAAATATGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
326 GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
61024373 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
391 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
61024438 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
456 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
61024503 TATTATGTCAAATTGT
521 TATTATGTCAAATTGT
*
61024519 TGTGACACCCCTAATTTGATCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
1 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
*
61024584 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAATTTTTAAGCTTC
66 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
61024649 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
131 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
61024714 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
196 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
61024779 AAAATCTAGATGGTGGCCAGCCATGCTAT-GGGTAAAACATATTATAGACATTTTATGCTAATAT
261 AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
61024843 GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
326 GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
61024908 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
391 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
61024973 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
456 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
61025038 TATTATGTCAAATTGT
521 TATTATGTCAAATTGT
*
61025054 TGTGACACCCCTAATTTGATCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
1 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
*
61025119 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTGAGCTTC
66 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
61025184 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
131 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
61025249 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
196 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
*
61025314 AAAATCTAGATGGTGGCCGGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
261 AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
61025379 GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
326 GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
61025444 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
391 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
61025509 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
456 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
61025574 TATTATGTCAAATTGT
521 TATTATGTCAAATTGT
61025590 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
1 TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
*
61025655 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTGAGCTTC
66 ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
*
61025720 AATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
131 GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
61025785 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
196 GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
*
61025850 AAAATCTAGATGGTGGCCGGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
261 AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
*
61025915 GTGTGGGAAGAATAATAAAATATGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
326 GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
61025980 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
391 CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
* *
61026045 CCGAATACAAGAAACAAAAGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
456 CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
*
61026110 AATTATGTCAAATTGT
521 TATTATGTCAAATTGT
61026126 GAAATTTTAA
Statistics
Matches: 2643, Mismatches: 35, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
535 531 0.20
536 2112 0.80
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (536 bp):
TGTGACACCCCTAATTTGACCCTAGTCGAAAAATGGTTTCGGGACCACAAAATCGAGTCATAAAA
ATAATTAGCCGTCATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAGCTTC
GATTTAGTCGATTGCATGTGAATTTAGTAATAGGACTTATGTGTGACACTTTTGAAATGCGATAG
GTTAATCTATAAGGACCTATTAATGCATGTTGTATAAAAGAAGGGTTTGCATGTCAAATTAGCCA
AAAATCTAGATGGTGGCCAGCCATGCTATGGGGTAAAACATATTATAGACATTTTATGCTAATAT
GTGTGGGAAGAATAATAAAATACGAGGGGAGTGGGAGGAGAAACCAAAGTTGTCTCCCCCTTACT
CCCCATTGCCGTGACTAGAGAAAGGGGAGGAAAAAACAAAGTTCTTTCTTTGTTGTTCAACTTGG
CCGAATAGAAGAAACAAAGGAGGGGAAGAATTTTTGGGTCACTTGAGTCATTAAAAAGGTTAGTA
TATTATGTCAAATTGT
Found at i:61030398 original size:47 final size:47
Alignment explanation
Indices: 61030303--61030879 Score: 969
Period size: 47 Copynumber: 12.3 Consensus size: 47
61030293 GTATGAGATA
* *
61030303 TATATATGTGATAAGGCCGAATGG-CAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
61030349 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
61030396 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
61030443 TATATATGTGA-AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
61030489 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
61030536 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
61030583 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
61030630 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
61030677 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
61030724 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
61030771 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
61030818 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
61030865 TATAAATGTGATAAG
1 TATATATGTGATAAG
61030880 TCCCGAAGGG
Statistics
Matches: 504, Mismatches: 25, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
46 69 0.14
47 435 0.86
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:61030497 original size:25 final size:25
Alignment explanation
Indices: 61030469--61030547 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
61030459 CTAATGGCCG
61030469 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
61030494 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
61030516 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
61030541 ATGTGAT
1 ATGTGAT
61030548 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:61031078 original size:36 final size:37
Alignment explanation
Indices: 61030997--61031078 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
61030987 CCGAGCTCTA
* *
61030997 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
61031034 AAGACCCGATGACCACGGGTGGAGATT-TTTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
61031070 AAGCCCCGA
1 AAGACCCGA
61031079 ACTAAAGGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 16 0.39
37 25 0.61
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.21
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:61033194 original size:40 final size:40
Alignment explanation
Indices: 61032985--61033341 Score: 564
Period size: 40 Copynumber: 9.1 Consensus size: 40
61032975 GAGAATTGAG
61032985 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
61033025 A-TGATATATCC-GACTAAGTTCC-AAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
61033062 AGTGATATATCCGGACTAAGTT-CGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
61033101 AGTGATATAACCGGACTAAGTTCCGAAGAGCATTC-TGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
61033140 AGTGATATAACCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
61033180 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
61033220 AGTGATATAACCGGACTAACTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
61033260 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * **
61033300 AGTGATATATTCGGGCGAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTTC-CGAAGAGCATTCGTGCT
61033340 AG
1 AG
61033342 AATTATGAGG
Statistics
Matches: 299, Mismatches: 12, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
37 16 0.05
38 22 0.07
39 95 0.32
40 166 0.56
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:61033447 original size:28 final size:28
Alignment explanation
Indices: 61033351--61033450 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
61033341 GAATTATGAG
* * * *
61033351 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
* * ** * *
61033379 GCACTATGTGTGCCAGATCAGTAGTTGAA
1 GCACTATGTGTGCGAGTTCTTTAATCG-A
61033408 GCACTATGTGTGCGAGTTCTTTAATCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
61033436 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
61033451 AATCAGTCAG
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
28 34 0.61
29 22 0.39
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:61036551 original size:47 final size:47
Alignment explanation
Indices: 61036481--61036965 Score: 808
Period size: 47 Copynumber: 10.3 Consensus size: 47
61036471 ATGAGATATA
* *
61036481 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
61036528 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
61036575 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
61036622 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
61036669 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
61036716 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
61036763 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
61036810 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
61036857 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
61036904 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
61036951 TATAAATGTGATAAG
1 TATATATGTGATAAG
61036966 TCCCGAAGGG
Statistics
Matches: 414, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 414 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:61037142 original size:37 final size:37
Alignment explanation
Indices: 61037083--61037165 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
61037073 CCGAGCTCTA
* *
61037083 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
61037120 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
61037157 AAGCCCCGA
1 AAGACCCGA
61037166 ACTAAAGGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:61038790 original size:47 final size:47
Alignment explanation
Indices: 61038736--61038929 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
61038726 TTAGGATTTT
** * *
61038736 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
61038783 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
61038830 ATGCGATGAATGTGAGCTTGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
61038877 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
61038924 ATGTGA
1 ATGTGA
61038930 AATATGTATG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:61039186 original size:37 final size:37
Alignment explanation
Indices: 61039136--61039243 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
61039126 GGAACTATAT
61039136 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
61039173 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
61039210 TCAGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
61039244 TCGTCTGAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:61042370 original size:24 final size:24
Alignment explanation
Indices: 61042343--61042410 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
61042333 CTATCCGGAG
61042343 CTTCCCAATATGGTTCTTTCTGAA
1 CTTCCCAATATGGTTCTTTCTGAA
* * * *
61042367 CTTCCCGATAAGATTCTTTGTGAA
1 CTTCCCAATATGGTTCTTTCTGAA
* *
61042391 CTTCCCGACTATGGCTCTTT
1 CTTCCC-AATATGGTTCTTT
61042411 ACAAGCTTTC
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
24 26 0.76
25 8 0.24
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (24 bp):
CTTCCCAATATGGTTCTTTCTGAA
Found at i:61044512 original size:40 final size:40
Alignment explanation
Indices: 61044467--61044634 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
61044457 CGGAATACAA
61044467 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
61044507 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
61044547 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
61044587 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
61044627 CCGGATAT
1 CCGGATAT
61044635 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:61051886 original size:40 final size:40
Alignment explanation
Indices: 61051841--61052008 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
61051831 CGGAATACAA
61051841 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
61051881 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
61051921 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
61051961 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
61052001 CCGGATAT
1 CCGGATAT
61052009 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:61053654 original size:12 final size:12
Alignment explanation
Indices: 61053637--61053717 Score: 92
Period size: 12 Copynumber: 6.8 Consensus size: 12
61053627 CATGAGTAAG
61053637 GACACGGGCTAA
1 GACACGGGCTAA
*
61053649 GACACGGGCTAG
1 GACACGGGCTAA
* *
61053661 GGCACAGGCTAA
1 GACACGGGCTAA
61053673 GACACGGGCTAA
1 GACACGGGCTAA
61053685 GACACGGGCT-A
1 GACACGGGCTAA
* *
61053696 GAACACGGCCTGA
1 G-ACACGGGCTAA
*
61053709 GACATGGGC
1 GACACGGGC
61053718 ATGCCACATG
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
11 2 0.03
12 54 0.93
13 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.36, T:0.09
Consensus pattern (12 bp):
GACACGGGCTAA
Found at i:61058934 original size:66 final size:68
Alignment explanation
Indices: 61058858--61059044 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
61058848 TAGTACCACT
*
61058858 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
61058920 CACG
65 CACG
61058924 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
61058989 ATCACG
63 ATCACG
61058995 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
61059045 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:61058969 original size:71 final size:71
Alignment explanation
Indices: 61058881--61059044 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61058871 CGATTTGTCT
61058881 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61058946 CTTTCA
66 CTTTCA
61058952 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61059017 CTTTCA
66 CTTTCA
61059023 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61059045 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61059082 original size:71 final size:70
Alignment explanation
Indices: 61058881--61059078 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
61058871 CGATTTGTCT
* * *
61058881 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61058946 CTTTCA
65 CTTTCA
* * *
61058952 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61059017 CTTTCA
65 CTTTCA
* *
61059023 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
61059079 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61066503 original size:66 final size:68
Alignment explanation
Indices: 61066427--61066613 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
61066417 TAGTACCACT
*
61066427 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
61066489 CACG
65 CACG
61066493 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
61066558 ATCACG
63 ATCACG
61066564 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
61066614 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:61066538 original size:71 final size:71
Alignment explanation
Indices: 61066450--61066613 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61066440 CGATTTGTCT
61066450 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61066515 CTTTCA
66 CTTTCA
61066521 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61066586 CTTTCA
66 CTTTCA
61066592 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61066614 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61066651 original size:71 final size:70
Alignment explanation
Indices: 61066450--61066647 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
61066440 CGATTTGTCT
* * *
61066450 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61066515 CTTTCA
65 CTTTCA
* * *
61066521 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
61066586 CTTTCA
65 CTTTCA
* *
61066592 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
61066648 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61074494 original size:28 final size:27
Alignment explanation
Indices: 61074431--61074500 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
61074421 ATAGTGAGTC
61074431 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
61074458 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61074486 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61074501 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61074582 original size:13 final size:13
Alignment explanation
Indices: 61074564--61074590 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
61074554 ATACCCGCAC
61074564 ACTTAGTGCCGAA
1 ACTTAGTGCCGAA
61074577 ACTTAGTGCCGAA
1 ACTTAGTGCCGAA
61074590 A
1 A
61074591 TCAACAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (13 bp):
ACTTAGTGCCGAA
Found at i:61082526 original size:28 final size:27
Alignment explanation
Indices: 61082463--61082532 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
61082453 ATAGTGAGTC
61082463 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
61082490 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61082518 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61082533 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61089727 original size:29 final size:29
Alignment explanation
Indices: 61089694--61089825 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
61089684 GTGACGAGAT
*
61089694 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
61089723 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
61089752 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
61089781 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
61089810 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
61089826 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:61091481 original size:28 final size:28
Alignment explanation
Indices: 61091439--61091514 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
61091429 ATGTACCATA
* * *
61091439 CTCGATACCTCGCACACTAAGTG-CTATT
1 CTCGATACTTTGCACACTAAGTGTC-ATC
*
61091467 CTGGAT-CTTTTGCACACTAAGTGTCATC
1 CTCGATAC-TTTGCACACTAAGTGTCATC
61091495 CTCGATACTTTGCACACTAA
1 CTCGATACTTTGCACACTAA
61091515 TTTCCATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 37 0.93
29 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (28 bp):
CTCGATACTTTGCACACTAAGTGTCATC
Found at i:61094964 original size:43 final size:43
Alignment explanation
Indices: 61094894--61095022 Score: 111
Period size: 43 Copynumber: 3.0 Consensus size: 43
61094884 ATAGCTCGTA
* * * * *
61094894 CAATGCC-ATATCCTAGATATGGACTTACATGTTATCACATAT
1 CAATGCCAATATCCCAGACAGGGTCTTACATGTAATCACATAT
* * * * *
61094936 CGATGCCACTATCCC-GTACAGGGTCTTACACGAAATCATA-AT
1 CAATGCCAATATCCCAG-ACAGGGTCTTACATGTAATCACATAT
* *
61094978 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
1 -CAATGCCAATATCCCAGACAGGGTCTTACATGTAATCACATAT
61095022 C
1 C
61095023 TAGTCAATGC
Statistics
Matches: 65, Mismatches: 17, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
42 9 0.14
43 53 0.82
44 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
CAATGCCAATATCCCAGACAGGGTCTTACATGTAATCACATAT
Found at i:61095102 original size:50 final size:50
Alignment explanation
Indices: 61095037--61095160 Score: 187
Period size: 50 Copynumber: 2.5 Consensus size: 50
61095027 CAATGCAATG
**
61095037 TCCCAGACATGGTCTTACACTGACTCTCTTATAT-CGAGGCCGATGCCATA
1 TCCCAGACATGGTCTTACACTGACTCTCCCATATCCG-GGCCGATGCCATA
* * *
61095087 TCCCAGACATGGTCTTACACTGACTCTCCCCTATCCGTGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTGACTCTCCCATATCCGGGCCGATGCCATA
61095137 TCCCAGACATGGTCTTACACTGAC
1 TCCCAGACATGGTCTTACACTGAC
61095161 ACATATCAAG
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
50 66 0.97
51 2 0.03
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACACTGACTCTCCCATATCCGGGCCGATGCCATA
Found at i:61100268 original size:40 final size:39
Alignment explanation
Indices: 61100223--61100430 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
61100213 CGGAATACAA
*
61100223 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
61100263 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
61100303 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
61100343 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
61100383 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
61100423 CCGGATAT
1 CCGGATAT
61100431 CATTCAATTG
Statistics
Matches: 143, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 142 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:61100363 original size:80 final size:81
Alignment explanation
Indices: 61100223--61100428 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 81
61100213 CGGAATACAA
* * *
61100223 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
61100287 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
61100303 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
61100366 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * * * *
61100383 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
61100429 ATCATTCAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 105 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:61110296 original size:25 final size:25
Alignment explanation
Indices: 61110268--61110360 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
61110258 ATGAGATGTG
* *
61110268 AATTGGTATGCTCACTCGAGCTGTA
1 AATTGGTATGCTCTCACGAGCTGTA
61110293 AATTGG-A-GCTCTCACGAGCTGTA
1 AATTGGTATGCTCTCACGAGCTGTA
*
61110316 AATCT-GTATGCTCTCACGAGCTATA
1 AAT-TGGTATGCTCTCACGAGCTGTA
61110341 AATTGGTATGCTCTCACGAG
1 AATTGGTATGCTCTCACGAG
61110361 TTGTGGGTCA
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 18 0.30
24 4 0.07
25 39 0.64
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (25 bp):
AATTGGTATGCTCTCACGAGCTGTA
Found at i:61116868 original size:57 final size:57
Alignment explanation
Indices: 61116800--61116911 Score: 149
Period size: 57 Copynumber: 1.9 Consensus size: 57
61116790 AACCCTACAT
61116800 ACATGCATATGGCCCACTT-GGCCCAATCTC-ATTCATAT-AGCCCATCAGGCCCAATTC
1 ACATGCATATGGCCCA-TTAGGCCCAAT-TCAATTCATATGA-CCCATCAGGCCCAATTC
* *
61116857 ACATTCATATGGCCCATTAGGCCCAATTCATATTCATATGACCCATTAGGCCCAA
1 ACATGCATATGGCCCATTAGGCCCAATTCA-ATTCATATGACCCATCAGGCCCAA
61116912 AACACCTTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
56 4 0.08
57 23 0.47
58 21 0.43
59 1 0.02
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.26
Consensus pattern (57 bp):
ACATGCATATGGCCCATTAGGCCCAATTCAATTCATATGACCCATCAGGCCCAATTC
Found at i:61116924 original size:29 final size:29
Alignment explanation
Indices: 61116800--61116911 Score: 131
Period size: 29 Copynumber: 3.9 Consensus size: 29
61116790 AACCCTACAT
* *
61116800 ACATGCATATGGCCCACTT-GGCCCAA-TC
1 ACATTCATATGACCCA-TTAGGCCCAATTC
* *
61116828 TCATTCATAT-AGCCCATCAGGCCCAATTC
1 ACATTCATATGA-CCCATTAGGCCCAATTC
*
61116857 ACATTCATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGACCCATTAGGCCCAATTC
*
61116886 ATATTCATATGACCCATTAGGCCCAA
1 ACATTCATATGACCCATTAGGCCCAA
61116912 AACACCTTTA
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
27 1 0.01
28 19 0.27
29 51 0.72
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGACCCATTAGGCCCAATTC
Found at i:61117155 original size:8 final size:8
Alignment explanation
Indices: 61117142--61117180 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
61117132 CAAACTTTTA
61117142 GCTTTTCG
1 GCTTTTCG
61117150 GCTTTTCG
1 GCTTTTCG
*
61117158 TCTTTTCG
1 GCTTTTCG
61117166 GCATTTT-G
1 GC-TTTTCG
61117174 GCTTTTC
1 GCTTTTC
61117181 AACTTTTCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 4 0.15
8 19 0.70
9 4 0.15
ACGTcount: A:0.03, C:0.23, G:0.21, T:0.54
Consensus pattern (8 bp):
GCTTTTCG
Found at i:61117178 original size:16 final size:15
Alignment explanation
Indices: 61117136--61117180 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
61117126 TGCAGCCAAA
*
61117136 CTTTTAGCTTTTCGG
1 CTTTTGGCTTTTCGG
*
61117151 CTTTTCGTCTTTTCGG
1 CTTTT-GGCTTTTCGG
61117167 CATTTTGGCTTTTC
1 C-TTTTGGCTTTTC
61117181 AACTTTTCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 5 0.20
16 16 0.64
17 4 0.16
ACGTcount: A:0.04, C:0.22, G:0.18, T:0.56
Consensus pattern (15 bp):
CTTTTGGCTTTTCGG
Found at i:61118362 original size:15 final size:14
Alignment explanation
Indices: 61118339--61118374 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
61118329 AAATAATCCA
*
61118339 AATAAAAATGAATT
1 AATAAAAATGAATG
61118353 AATAAGAAATGAATG
1 AATAA-AAATGAATG
61118368 AATAAAA
1 AATAAAA
61118375 GAATAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (14 bp):
AATAAAAATGAATG
Found at i:61119649 original size:24 final size:24
Alignment explanation
Indices: 61119622--61119756 Score: 132
Period size: 24 Copynumber: 5.7 Consensus size: 24
61119612 GAAATGATTT
61119622 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
*
61119646 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
61119670 CGGCAC-ATGTGTGTGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
61119693 TGGCACTATATGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
61119717 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
61119742 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
61119757 GGTAAACATG
Statistics
Matches: 90, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
23 20 0.22
24 67 0.74
25 2 0.02
26 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:61119696 original size:47 final size:48
Alignment explanation
Indices: 61119623--61119714 Score: 132
Period size: 47 Copynumber: 1.9 Consensus size: 48
61119613 AAATGATTTT
*
61119623 GGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTAC
1 GGCACTATGTGTGCGAATTTGAATGGCACTATATGTGCGAATTTGTAC
* * * *
61119671 GGCAC-ATGTGTGTGGATTTGTATGGCACTATATGTGCGGATTTG
1 GGCACTATGTGTGCGAATTTGAATGGCACTATATGTGCGAATTTG
61119715 AATGTCAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 34 0.87
48 5 0.13
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.35
Consensus pattern (48 bp):
GGCACTATGTGTGCGAATTTGAATGGCACTATATGTGCGAATTTGTAC
Found at i:61119746 original size:71 final size:72
Alignment explanation
Indices: 61119622--61119754 Score: 178
Period size: 71 Copynumber: 1.9 Consensus size: 72
61119612 GAAATGATTT
* * * ** *
61119622 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTACGGCAC-ATGTGTGTGG
1 TGGCACTATATGTGCGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGTGG
61119686 ATTTGTA
66 ATTTGTA
* * *
61119693 TGGCACTATATGTGCGGATTTGAATGTCAATATGTATGTGAATTACTAAGGCACTATGTGTG
1 TGGCACTATATGTGCGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTG
61119755 CGGGTAAACA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
71 45 0.87
72 7 0.13
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (72 bp):
TGGCACTATATGTGCGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGTGG
ATTTGTA
Found at i:61127744 original size:58 final size:57
Alignment explanation
Indices: 61127636--61127752 Score: 141
Period size: 58 Copynumber: 2.0 Consensus size: 57
61127626 ACCTCTACAT
* *
61127636 ACATGCATATGGCCTACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAATTC
1 ACATGCATATGGCCCACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAAATC
* *
61127693 ACATTCATATGGCCCA-TTAGGCCCAAT-TCATATTCATAT-GACCCATTAGGCCCAAATC
1 ACATGCATATGGCCCACTT-GGCCCAATCTC--ATTCATATAG-CCCATCAGGCCCAAATC
61127751 AC
1 AC
61127753 CTTTATATTC
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
56 4 0.08
57 23 0.44
58 25 0.48
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.26
Consensus pattern (57 bp):
ACATGCATATGGCCCACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAAATC
Found at i:61127760 original size:29 final size:29
Alignment explanation
Indices: 61127655--61127752 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
61127645 TGGCCTACTT
* *
61127655 GGCCCAA-TCTCATTCATAT-AGCCCATCA
1 GGCCCAATTCACATTCATATGA-CCCATTA
*
61127683 GGCCCAATTCACATTCATATGGCCCATTA
1 GGCCCAATTCACATTCATATGACCCATTA
*
61127712 GGCCCAATTCATATTCATATGACCCATTA
1 GGCCCAATTCACATTCATATGACCCATTA
*
61127741 GGCCCAAATCAC
1 GGCCCAATTCAC
61127753 CTTTATATTC
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
28 7 0.11
29 54 0.89
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.26
Consensus pattern (29 bp):
GGCCCAATTCACATTCATATGACCCATTA
Found at i:61128013 original size:24 final size:24
Alignment explanation
Indices: 61127972--61128038 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
61127962 GCAGCCAAAC
* *
61127972 TTTCAGCTCTTC-AGCTTTTCGGTA
1 TTTCAGCTTTTCGA-CTTTTCGGCA
61127996 TTTCAGCTTTTCGACTTTTCGGCA
1 TTTCAGCTTTTCGACTTTTCGGCA
* *
61128020 ATTCAGCTTTTCGGCTTTT
1 TTTCAGCTTTTCGACTTTT
61128039 GCCAATCTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 37 0.97
25 1 0.03
ACGTcount: A:0.12, C:0.24, G:0.16, T:0.48
Consensus pattern (24 bp):
TTTCAGCTTTTCGACTTTTCGGCA
Found at i:61129689 original size:27 final size:26
Alignment explanation
Indices: 61129659--61129747 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
61129649 CCCCAGTTTA
*
61129659 TAAAATTACCCAAATATCCTTGATTTG
1 TAAAATTACCGAAATA-CCTTGATTTG
* *
61129686 TAAAATTACCGAAATACCCTCAGTTTG
1 TAAAATTACCGAAATACCTTGA-TTTG
* * *
61129713 CAAAATTACTGAAATACCCTTGACTTG
1 TAAAATTACCGAAATA-CCTTGATTTG
61129740 TAAAATTA
1 TAAAATTA
61129748 TCAACGTACC
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.08
27 43 0.84
28 4 0.08
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (26 bp):
TAAAATTACCGAAATACCTTGATTTG
Found at i:61129758 original size:54 final size:53
Alignment explanation
Indices: 61129600--61129776 Score: 178
Period size: 54 Copynumber: 3.3 Consensus size: 53
61129590 AGAATACTTT
* * * * *
61129600 AGTTTACCAAATTACTGAAATACCCCT-AGTAGTAAAATTACCAATGTACCCCC
1 AGTTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAA-GTACCCTC
* ** * * *
61129653 AGTTTATAAAATTACCCAAATATCCTTGATTTGTAAAATTACCGAAATACCCTC
1 AGTTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACC-AAGTACCCTC
* *
61129707 AGTTTGCAAAATTACTGAAATACCCTTGACTTGTAAAATTATCAACGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAA-GTACCCTC
*
61129761 -GAATTACAAAATTACT
1 AG-TTTACAAAATTACT
61129777 ATTTTACCCT
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
53 24 0.24
54 74 0.74
55 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (53 bp):
AGTTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAGTACCCTC
Found at i:61129784 original size:27 final size:27
Alignment explanation
Indices: 61129754--61130298 Score: 644
Period size: 27 Copynumber: 20.2 Consensus size: 27
61129744 ATTATCAACG
* *
61129754 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
61129781 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
61129808 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
61129835 TACCCTCGATTTGCAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
61129862 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
61129889 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
61129916 TACCCTCGATTTATAGAATTACAATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
61129943 TACCATCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
61129970 TACCCTCAATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
61129997 TACCCTCGATTGATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * * *
61130024 TATCCTAGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
61130051 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
61130078 TACCCTCGATTTAGAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
61130105 TACCTTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
61130132 TACCCTCAATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* * *
61130159 TACCCTCGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
61130186 TACCGTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
61130213 TACCCTCGATTTAAAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
61130240 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* **
61130267 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
61130294 TACCC
1 TACCC
61130299 CTAGGGTGTT
Statistics
Matches: 456, Mismatches: 58, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.00
27 453 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:61130579 original size:27 final size:26
Alignment explanation
Indices: 61130535--61130586 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
61130525 CTCGCTGCAA
*
61130535 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
61130562 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
61130587 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:61130626 original size:2 final size:2
Alignment explanation
Indices: 61130619--61130656 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
61130609 GCTTCGCCAC
61130619 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61130657 CTTTTCTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61130878 original size:6 final size:6
Alignment explanation
Indices: 61130832--61130923 Score: 55
Period size: 6 Copynumber: 15.0 Consensus size: 6
61130822 GCATTCACAC
* * *
61130832 TCTGAT TTTGAT TCTG-T TACCTGAT ACTGAT TCTAAT TCTGAT TCTG-T
1 TCTGAT TCTGAT TCTGAT T--CTGAT TCTGAT TCTGAT TCTGAT TCTGAT
* * * *
61130880 CACCTGAT TCTGAT TTTGAT TCTCAT TTTGAT TCT-AGT TCTGAT
1 --TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGA-T TCTGAT
61130924 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
TCTGAT
Found at i:61130902 original size:31 final size:31
Alignment explanation
Indices: 61130832--61130902 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
61130822 GCATTCACAC
* *
61130832 TCTGATTTTGATTCTGTTACCTGATACTGAT
1 TCTGATTCTGATTCTGTCACCTGATACTGAT
* *
61130863 TCTAATTCTGATTCTGTCACCTGATTCTGAT
1 TCTGATTCTGATTCTGTCACCTGATACTGAT
*
61130894 TTTGATTCT
1 TCTGATTCT
61130903 CATTTTGATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
TCTGATTCTGATTCTGTCACCTGATACTGAT
Found at i:61133892 original size:25 final size:25
Alignment explanation
Indices: 61133848--61133947 Score: 119
Period size: 25 Copynumber: 4.0 Consensus size: 25
61133838 ATGCTCATAT
* * * *
61133848 GAGCTATGAATCGATATGCTCACTC
1 GAGCTATAAATCGGTATGCTCTCAC
* *
61133873 GAGCTATAAATTGGTGTGCTCTCAC
1 GAGCTATAAATCGGTATGCTCTCAC
*
61133898 AAGCTATAAATCGGTATGCTCTCAC
1 GAGCTATAAATCGGTATGCTCTCAC
* *
61133923 GAGCTGTAAATCAGTATGCTCTCAC
1 GAGCTATAAATCGGTATGCTCTCAC
61133948 AAGTTTGGGT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
GAGCTATAAATCGGTATGCTCTCAC
Found at i:61133916 original size:50 final size:50
Alignment explanation
Indices: 61133849--61133950 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
61133839 TGCTCATATG
* * ** *
61133849 AGCTATGAATCGATATGCTCACTCGAGCTATAAATTGGTGTGCTCTCACA
1 AGCTATAAATCGATATGCTCACACGAGCTATAAATCAGTATGCTCTCACA
* * *
61133899 AGCTATAAATCGGTATGCTCTCACGAGCTGTAAATCAGTATGCTCTCACA
1 AGCTATAAATCGATATGCTCACACGAGCTATAAATCAGTATGCTCTCACA
61133949 AG
1 AG
61133951 TTTGGGTCAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (50 bp):
AGCTATAAATCGATATGCTCACACGAGCTATAAATCAGTATGCTCTCACA
Found at i:61137961 original size:13 final size:13
Alignment explanation
Indices: 61137924--61137964 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
61137914 ATACTATTAA
61137924 TTATTTGTAAAAT
1 TTATTTGTAAAAT
*
61137937 TTATTAT-CAAAAT
1 TTATT-TGTAAAAT
61137950 TTATTTGTAAAAT
1 TTATTTGTAAAAT
61137963 TT
1 TT
61137965 GAATATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (13 bp):
TTATTTGTAAAAT
Found at i:61143657 original size:35 final size:35
Alignment explanation
Indices: 61143618--61143687 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
61143608 GACTTTGTTA
61143618 ATCTATCAATAATAACTCAGATCAAATCTTTCTTT
1 ATCTATCAATAATAACTCAGATCAAATCTTTCTTT
*
61143653 ATCTATCAATAATAACTCAGATCGAATCTTTCTTT
1 ATCTATCAATAATAACTCAGATCAAATCTTTCTTT
61143688 CTCAGTGATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (35 bp):
ATCTATCAATAATAACTCAGATCAAATCTTTCTTT
Found at i:61147411 original size:40 final size:40
Alignment explanation
Indices: 61147329--61147435 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
61147319 TATGTTTGGA
*
61147329 ACTTAGTGTGCGTTTCGAGATAGCTTCGGCTATATACAGC
1 ACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACAGC
* * ***
61147369 ACTTAGTGTGCGAATTGGA-ATAGCTTCGGCTTTATGTGGC
1 ACTTAGTGTGCG-ATTCGAGATAGCTTCGGCTATATACAGC
* * *
61147409 ACTAAGTGTACGATACTGAGATAGCTT
1 ACTTAGTGTGCGATTC-GAGATAGCTT
61147436 TGGTTTAATG
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
39 2 0.04
40 41 0.76
41 11 0.20
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
ACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACAGC
Found at i:61148427 original size:25 final size:25
Alignment explanation
Indices: 61148393--61148448 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
61148383 ATTTGAGAGT
61148393 AAAATTATGAAATAGGACCTATGTG
1 AAAATTATGAAATAGGACCTATGTG
61148418 AAAATTATGAAATAGGACCTATGTG
1 AAAATTATGAAATAGGACCTATGTG
61148443 AAAATT
1 AAAATT
61148449 TCTGAAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.29
Consensus pattern (25 bp):
AAAATTATGAAATAGGACCTATGTG
Found at i:61149870 original size:2 final size:2
Alignment explanation
Indices: 61149863--61149896 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
61149853 TGAAAGTTGA
61149863 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61149897 TTTGAAAGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61150917 original size:38 final size:38
Alignment explanation
Indices: 61150875--61150976 Score: 132
Period size: 38 Copynumber: 2.7 Consensus size: 38
61150865 TAAAGACCCT
** *
61150875 CAGGCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCG
1 CAGGCTTCGTGCTGGTATTATATTCGGGATAAATCCCG
* * *
61150913 CAGGCTTCGTGCTGGTATTATATCCAGGATAAATCCTG
1 CAGGCTTCGTGCTGGTATTATATTCGGGATAAATCCCG
* *
61150951 CAGGCCTAGTGCTGGTATTATATTCG
1 CAGGCTTCGTGCTGGTATTATATTCG
61150977 AGCCTTCGTG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTATTATATTCGGGATAAATCCCG
Found at i:61151181 original size:43 final size:43
Alignment explanation
Indices: 61150971--61151168 Score: 351
Period size: 43 Copynumber: 4.6 Consensus size: 43
61150961 GCTGGTATTA
*
61150971 TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
61151014 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
61151057 TATTCGGGCCTTCGTGCTTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
61151100 TACTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
61151143 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
61151169 GTAATGCCGG
Statistics
Matches: 146, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:61154313 original size:54 final size:54
Alignment explanation
Indices: 61154253--61154367 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
61154243 TTTGATTATT
*
61154253 TCACATGACCATGT-ACACAGGCCGTGTAACTAACTATGCCCGTGTAAAATAAGG
1 TCACATGACCATGTGAC-CAGGCCGTGTAACTAACTATGCCCATGTAAAATAAGG
** * * * *
61154307 TCACATGGTCGTGTGGCCAGGCTGTGTAACTAACTGTGCCCATGTAAAATAAGG
1 TCACATGACCATGTGACCAGGCCGTGTAACTAACTATGCCCATGTAAAATAAGG
*
61154361 TTACATG
1 TCACATG
61154368 GCCGTTTGGC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 51 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (54 bp):
TCACATGACCATGTGACCAGGCCGTGTAACTAACTATGCCCATGTAAAATAAGG
Found at i:61154368 original size:54 final size:54
Alignment explanation
Indices: 61154270--61154406 Score: 193
Period size: 54 Copynumber: 2.5 Consensus size: 54
61154260 ACCATGTACA
* * * *
61154270 CAGGCCGTGTAACTAACTATGCCCGTGTAAAATAAGGTCACATGGTCGTGTGGC
1 CAGGCTGTGTAACTAACTGTGCCCATGTAAAATAAGGTCACATGGCCGTGTGGC
* *
61154324 CAGGCTGTGTAACTAACTGTGCCCATGTAAAATAAGGTTACATGGCCGTTTGGC
1 CAGGCTGTGTAACTAACTGTGCCCATGTAAAATAAGGTCACATGGCCGTGTGGC
* * *
61154378 TAGGCTGTGTAACTCACTGTGACCATGTA
1 CAGGCTGTGTAACTAACTGTGCCCATGTA
61154407 GCTCACGATC
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 74 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (54 bp):
CAGGCTGTGTAACTAACTGTGCCCATGTAAAATAAGGTCACATGGCCGTGTGGC
Found at i:61157245 original size:131 final size:131
Alignment explanation
Indices: 61157001--61157429 Score: 628
Period size: 131 Copynumber: 3.3 Consensus size: 131
61156991 GGTTGTTACA
* *
61157001 ATTAAGGCTCGATGATTTACAATCACAGCCTAAGTTCATTTGATTTACTATCATGAACAATCTTT
1 ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTTCATTTGATTTACTATCATGAACAAT-TTT
* * *
61157066 -TCTGAGTTAGTTGATTTACTATCGCTACTCCAAACATCTCAATGATTTAAGATCACAACTAATA
65 CTCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCAATTATTTAAGATCACAACTAATA
61157130 TT
130 TT
* *
61157132 ATTAAGGCTCGTTGATTTACAATCATAACCTAAGTTCATTTGAGTTACTATCATGAACAATTTTC
1 ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTTCATTTGATTTACTATCATGAACAATTTTC
* * * * *
61157197 TCTAAGTTAGTTGATTTACTATTGCTGCTCCAAATAGCTCACTTATTTAAGATCACAACTAATAT
66 TCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCAATTATTTAAGATCACAACTAATAT
61157262 T
131 T
* * *
61157263 ATTAAGGCTCGTTGATTTACTATCATAGCCTAAGTTCATTTGATTTACTCTCATGAACAATCTTC
1 ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTTCATTTGATTTACTATCATGAACAATTTTC
* *
61157328 TCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTC-GTTGATTTAAGATCACAACTGATA
66 TCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCAATT-ATTTAAGATCACAACTAATA
61157392 TT
130 TT
* * * * *
61157394 ACTAAGGCTCATTGATTTACGATCACAGCTTAAGTT
1 ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTT
61157430 TATTAATTTG
Statistics
Matches: 269, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
130 5 0.02
131 264 0.98
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (131 bp):
ATTAAGGCTCGTTGATTTACAATCATAGCCTAAGTTCATTTGATTTACTATCATGAACAATTTTC
TCTAAGTTAGTTGATTTACTATCGCTACTCCAAACAACTCAATTATTTAAGATCACAACTAATAT
T
Found at i:61158339 original size:14 final size:14
Alignment explanation
Indices: 61158298--61158348 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
61158288 ATTTTCACCA
61158298 TCTTTCTTTGCTATTT
1 TCTTTCTTT-CT-TTT
**
61158314 T-TTTAGTTCTTTT
1 TCTTTCTTTCTTTT
61158327 TCTTTCTTTCTTTT
1 TCTTTCTTTCTTTT
*
61158341 TGTTTCTT
1 TCTTTCTT
61158349 GAATATTTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
13 4 0.14
14 19 0.66
15 5 0.17
16 1 0.03
ACGTcount: A:0.04, C:0.16, G:0.06, T:0.75
Consensus pattern (14 bp):
TCTTTCTTTCTTTT
Found at i:61161579 original size:48 final size:48
Alignment explanation
Indices: 61161508--61161844 Score: 586
Period size: 48 Copynumber: 7.0 Consensus size: 48
61161498 CAAGATAAAT
* *
61161508 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
61161556 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
61161604 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
61161652 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61161700 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61161748 ATATGTATAT-TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
61161795 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
61161843 AT
1 AT
61161845 GTGTGTATAT
Statistics
Matches: 276, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 47 0.17
48 229 0.83
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Done.