Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 212 of 345
Found at i:61168490 original size:22 final size:22
Alignment explanation
Indices: 61168462--61168504 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
61168452 CCTCCGGAGT
61168462 TAGATCGCATCCATAACATCTG
1 TAGATCGCATCCATAACATCTG
*
61168484 TAGATCGCATCCATGACATCT
1 TAGATCGCATCCATAACATCT
61168505 TTCACGTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (22 bp):
TAGATCGCATCCATAACATCTG
Found at i:61169153 original size:14 final size:15
Alignment explanation
Indices: 61169127--61169156 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61169117 ATTTTTTTAG
61169127 TTCTTTTTCTTTTCT
1 TTCTTTTTCTTTTCT
61169142 TTCTTTTT-TTTTCT
1 TTCTTTTTCTTTTCT
61169156 T
1 T
61169157 GAATGTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTCTTTTTCTTTTCT
Found at i:61173047 original size:43 final size:43
Alignment explanation
Indices: 61172999--61173196 Score: 299
Period size: 43 Copynumber: 4.6 Consensus size: 43
61172989 CCGACATTAC
61172999 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCA-TGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACT-AA
*
61173042 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
* * * *
61173085 GCTTGCTAGGCACGAAGGCCCGAATACACACCACCAGTACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
* * *
61173128 GCCTGCTAGGCACGAAGGCTCGAATACACATCATCGGCACTTA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
*
61173171 GCCTGCTAGGCACGAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
61173197 TAATACCAGC
Statistics
Matches: 139, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 139 1.00
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
Found at i:61173242 original size:38 final size:38
Alignment explanation
Indices: 61173194--61173268 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
61173184 GAAGGCCCAA
*** *
61173194 ATATAATACCAGCACTCGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
61173232 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
61173269 AATACACATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:61175254 original size:40 final size:41
Alignment explanation
Indices: 61175197--61175446 Score: 291
Period size: 40 Copynumber: 6.3 Consensus size: 41
61175187 CTAACGGTGT
* * *
61175197 TAAGTCCCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
61175237 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
61175277 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
61175317 TAAGTCCCGAAGGCATTTGTGTGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * *
61175357 TAAGTCCCGAAGGCATTTGCGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * * * *
61175397 TAAGACCCGACGGC-CTTGTGCGAGTG-GTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
61175435 TAAATCCCGAAG
1 TAAGTCCCGAAG
61175447 ATAAGTGGGT
Statistics
Matches: 186, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 157 0.84
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
Found at i:61178516 original size:30 final size:30
Alignment explanation
Indices: 61178461--61178591 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
61178451 ATAGTGAATC
*
61178461 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
61178490 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
61178520 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
61178548 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
61178578 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61178592 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:61178571 original size:58 final size:58
Alignment explanation
Indices: 61178460--61178591 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
61178450 TATAGTGAAT
* * * * *
61178460 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
61178519 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
61178577 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
61178592 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:61186464 original size:30 final size:30
Alignment explanation
Indices: 61186409--61186539 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
61186399 ATAGTGAATC
*
61186409 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
61186438 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
61186468 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
61186496 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
61186526 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61186540 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:61186519 original size:58 final size:58
Alignment explanation
Indices: 61186408--61186539 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
61186398 TATAGTGAAT
* * * * *
61186408 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
61186467 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
61186525 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
61186540 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:61196213 original size:40 final size:41
Alignment explanation
Indices: 61196157--61196405 Score: 271
Period size: 40 Copynumber: 6.3 Consensus size: 41
61196147 TAACGGGGTA
* * *
61196157 AAGTCCCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGCT
* *
61196197 AAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGAGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGCT
* *
61196237 AAGACCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGCT
* *
61196277 AAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGTGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGCT
* * *
61196317 AAGTCCCGAAGGCATTTGCGCTAGTGAC-CATATCCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGCT
* * * * * *
61196357 AAGGCCCGACGGC-CTTGTGCAAGTG-GTTATATCC-GGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGCT
*
61196395 AAATCCCGAAG
1 AAGTCCCGAAG
61196406 ATAAGTGGGT
Statistics
Matches: 183, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
38 12 0.07
39 17 0.09
40 154 0.84
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (41 bp):
AAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGCT
Found at i:61197778 original size:43 final size:43
Alignment explanation
Indices: 61197717--61197910 Score: 334
Period size: 43 Copynumber: 4.5 Consensus size: 43
61197707 CAGGCATTAC
*
61197717 GCCTGCTAGGTACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
61197760 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
61197803 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
61197846 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
61197889 GCCTGCTAGGCACGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCG
61197911 GATATAATAC
Statistics
Matches: 143, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 143 1.00
ACGTcount: A:0.30, C:0.34, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:61197956 original size:38 final size:38
Alignment explanation
Indices: 61197907--61197986 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
61197897 GGCACGAAGG
* * *
61197907 CCCGGATATAATACCAGCACTAGGCCTGCGAGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
*
61197945 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
61197983 CCCG
1 CCCG
61197987 AATACACATC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
Found at i:61200308 original size:40 final size:39
Alignment explanation
Indices: 61200263--61200392 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
61200253 CGGAACATAA
61200263 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
61200303 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
61200343 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
61200383 CCGGATATAA
1 CCGGATATAA
61200393 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:61200407 original size:40 final size:40
Alignment explanation
Indices: 61200279--61200430 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
61200269 ATAACCATGT
* * *
61200279 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
61200319 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
61200359 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
61200399 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
61200431 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:61200413 original size:80 final size:80
Alignment explanation
Indices: 61200279--61200428 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
61200269 ATAACCATGT
*
61200279 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
61200343 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
61200359 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
61200422 CCCGGAT
64 CCCGGAT
61200429 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:61209740 original size:16 final size:16
Alignment explanation
Indices: 61209719--61209750 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
61209709 TATAATAAGA
61209719 TATAAAGCAAAAATGG
1 TATAAAGCAAAAATGG
61209735 TATAAAGCAAAAATGG
1 TATAAAGCAAAAATGG
61209751 GAATGGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (16 bp):
TATAAAGCAAAAATGG
Found at i:61210506 original size:48 final size:48
Alignment explanation
Indices: 61210439--61210539 Score: 202
Period size: 48 Copynumber: 2.1 Consensus size: 48
61210429 ACTTTACATC
61210439 TTTATTCAATTTAGCTCTTTTTACCCTTCTTTGTTGATGTGCCATTAT
1 TTTATTCAATTTAGCTCTTTTTACCCTTCTTTGTTGATGTGCCATTAT
61210487 TTTATTCAATTTAGCTCTTTTTACCCTTCTTTGTTGATGTGCCATTAT
1 TTTATTCAATTTAGCTCTTTTTACCCTTCTTTGTTGATGTGCCATTAT
61210535 TTTAT
1 TTTAT
61210540 CTTTTAAGCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.17, C:0.18, G:0.10, T:0.55
Consensus pattern (48 bp):
TTTATTCAATTTAGCTCTTTTTACCCTTCTTTGTTGATGTGCCATTAT
Found at i:61210900 original size:28 final size:29
Alignment explanation
Indices: 61210868--61210928 Score: 72
Period size: 27 Copynumber: 2.1 Consensus size: 29
61210858 TCATGTCAAC
*
61210868 AAATATTAAAAAATATTTGA-AAATT-TAA
1 AAATA-TAAAAAATATTTAATAAATTCTAA
* *
61210896 AAATATAATAAATTTTTAATAAATTCTAA
1 AAATATAAAAAATATTTAATAAATTCTAA
61210925 AAAT
1 AAAT
61210929 TTTATAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 11 0.39
28 10 0.36
29 7 0.25
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (29 bp):
AAATATAAAAAATATTTAATAAATTCTAA
Found at i:61210935 original size:18 final size:20
Alignment explanation
Indices: 61210909--61210945 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
61210899 TATAATAAAT
61210909 TTTTAATAAA-TTCTAAAAA
1 TTTTAATAAATTTCTAAAAA
61210928 TTTT-ATAAATTTCTAAAA
1 TTTTAATAAATTTCTAAAA
61210946 GTAAAGGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTAATAAATTTCTAAAAA
Found at i:61214064 original size:43 final size:43
Alignment explanation
Indices: 61214016--61214123 Score: 162
Period size: 43 Copynumber: 2.5 Consensus size: 43
61214006 GATTAACGAG
61214016 ATGTGAATATGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGAATATGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * *
61214059 ATGTGACTATGTGTAAAACCATGTCTGGGACATTGGCATCGTT
1 ATGTGAATATGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * *
61214102 ATTTGATTTTGTGTAAGACCAT
1 ATGTGAATATGTGTAAGACCAT
61214124 AGCTAGGCTA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (43 bp):
ATGTGAATATGTGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:61218504 original size:30 final size:30
Alignment explanation
Indices: 61218446--61218504 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
61218436 AAACACAAAA
*
61218446 ACGAAGCACATCTTCGAGAATCTAAATTAG
1 ACGAAGCACATCTTCGAGAATCCAAATTAG
*
61218476 ACGAAGCACATCTTCGAGAATCCGAATTA
1 ACGAAGCACATCTTCGAGAATCCAAATTA
61218505 CTCTCTCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (30 bp):
ACGAAGCACATCTTCGAGAATCCAAATTAG
Found at i:61221035 original size:93 final size:93
Alignment explanation
Indices: 61220923--61221094 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
61220913 CGCCCATAAG
* *
61220923 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
61220987 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
61221016 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
61221081 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
61221095 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:61221086 original size:46 final size:46
Alignment explanation
Indices: 61220916--61221091 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
61220906 TGTAACCCGC
*
61220916 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* * *
61220962 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
61221012 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
61221055 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
61221092 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.56
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:61224823 original size:36 final size:36
Alignment explanation
Indices: 61224778--61224846 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
61224768 TTAAACACTC
*
61224778 TACCGGTGTGCAAGAAAGTTCATCAAATACTCTGAT
1 TACCAGTGTGCAAGAAAGTTCATCAAATACTCTGAT
*
61224814 TACCAGTGTGTAAGAAAGTTCATCAAATACTCT
1 TACCAGTGTGCAAGAAAGTTCATCAAATACTCT
61224847 AATAGTGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (36 bp):
TACCAGTGTGCAAGAAAGTTCATCAAATACTCTGAT
Found at i:61247584 original size:28 final size:28
Alignment explanation
Indices: 61247523--61247620 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
61247513 TCACAAATTG
** * *
61247523 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
61247552 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
61247580 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
61247608 GCACTAAGTGTGC
1 GCACTAAGTGTGC
61247621 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:61255352 original size:79 final size:79
Alignment explanation
Indices: 61255177--61255430 Score: 356
Period size: 79 Copynumber: 3.2 Consensus size: 79
61255167 GATGATAACG
61255177 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
*
61255242 TGAGTTACTAATTCC
66 CGAGTTACTAA-TCC
*
61255257 GGGCTAAGTCCC-AAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGTCCC-AAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
*
61255320 CGAGTTTCTATATCC
66 CGAGTTACTA-ATCC
** *
61255335 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
61255399 GCGAG-TAGCTACATCC
65 GCGAGTTA-CTA-ATCC
* *
61255415 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
61255431 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
78 37 0.23
79 87 0.55
80 34 0.22
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTAATCC
Found at i:61255416 original size:40 final size:40
Alignment explanation
Indices: 61255177--61255404 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
61255167 GATGATAACG
61255177 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
61255217 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
61255257 GGGCTAAGTCCC-AAGGCATTTGTGTGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
61255296 GGGCTAAGTCCC-AAGGCATTTGTGCGAGTTTCT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
61255335 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
61255375 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
61255405 AGCTACATCC
Statistics
Matches: 177, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 2 0.01
39 73 0.41
40 102 0.58
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:61257781 original size:48 final size:46
Alignment explanation
Indices: 61257722--61257852 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 46
61257712 GTAAGTGATG
*
61257722 CCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCGGAGAGGAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTATTTAGGAGA--AGTTA
* * *
61257770 CCTTGATTTGGCTATGGGCCATGGTATAGGTACTCTAGGATAAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTA-TTTAGGAGAAGTTA
* *
61257817 CCTTGATTTGGCTTCAGGCCATGGTATAGGTATTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTATTTA
61257853 TCGATTGAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 3 0.04
47 34 0.46
48 31 0.42
49 6 0.08
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.34
Consensus pattern (46 bp):
CCTTGATTTGGCTACGGGCCATGGTATAGGTATTTAGGAGAAGTTA
Found at i:61266628 original size:36 final size:36
Alignment explanation
Indices: 61266583--61266694 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
61266573 GTGTCTCTGT
* **
61266583 TGGACTAGCTCTTCGGAGCCAT-TGGTGTGTTTTGGA
1 TGGATTAGCTCTTATGAG-CATATGGTGTGTTTTGGA
* * ** * *
61266619 TGGATTAGCTCTTATGAACATCTAATGTGCTTTAGA
1 TGGATTAGCTCTTATGAGCATATGGTGTGTTTTGGA
*
61266655 TGGATTAGCTCTTATGAGCATATGGTGTGTTTTGGT
1 TGGATTAGCTCTTATGAGCATATGGTGTGTTTTGGA
61266691 TGGA
1 TGGA
61266695 ATATTGATGT
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
35 3 0.05
36 57 0.95
ACGTcount: A:0.20, C:0.12, G:0.29, T:0.39
Consensus pattern (36 bp):
TGGATTAGCTCTTATGAGCATATGGTGTGTTTTGGA
Found at i:61270027 original size:14 final size:15
Alignment explanation
Indices: 61270008--61270038 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
61269998 GCATATACAT
61270008 ACAACCAA-ACATCA
1 ACAACCAAGACATCA
61270022 ACAACCAAGACATCA
1 ACAACCAAGACATCA
61270037 AC
1 AC
61270039 TCATCATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.55, C:0.35, G:0.03, T:0.06
Consensus pattern (15 bp):
ACAACCAAGACATCA
Found at i:61272047 original size:21 final size:21
Alignment explanation
Indices: 61272023--61272066 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
61272013 TCTCATAACT
*
61272023 TCCTCAGGTTCCCACTTAGCC
1 TCCTCAGGTTCCCACATAGCC
61272044 TCCTCAGGTTCCCACATAGCC
1 TCCTCAGGTTCCCACATAGCC
61272065 TC
1 TC
61272067 TTCGACCCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.43, G:0.14, T:0.27
Consensus pattern (21 bp):
TCCTCAGGTTCCCACATAGCC
Found at i:61277440 original size:41 final size:41
Alignment explanation
Indices: 61277395--61277512 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
61277385 TGAAAGATAA
61277395 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
61277436 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61277466 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61277507 ATGTAG
1 ATGTAG
61277513 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:61277451 original size:71 final size:71
Alignment explanation
Indices: 61277363--61277526 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61277353 GAGATGTATC
61277363 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61277428 AGGACA
66 AGGACA
61277434 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61277499 AGGACA
66 AGGACA
61277505 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
61277527 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:61284982 original size:71 final size:71
Alignment explanation
Indices: 61284894--61285057 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
61284884 GAGATGTATC
61284894 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61284959 AGGACA
66 AGGACA
61284965 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
61285030 CGGACA
66 AGGACA
61285036 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
61285058 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:61290715 original size:168 final size:169
Alignment explanation
Indices: 61290437--61290778 Score: 614
Period size: 168 Copynumber: 2.0 Consensus size: 169
61290427 CCTCCCTCAC
*
61290437 TCTCATGGGTCAGATGTCCCCACAAGGCATCTCGAGCATGCTAAGTATAATGATGATCGAGAAAC
1 TCTCATGGGCCAGATGTCCCCACAAGGCATCTCGAGCATGCTAAGTATAATGATGATCGAGAAAC
* *
61290502 GACATGGCACATTCCCTCTTCAGTACCATCTCGCCCAATCCACCAATGAGGAGA-CCCCGAGGGT
66 GACATGGCACATTCCCTCTTCAGTACCATCTCACCCAATCCACCAATGAGGAGACCCCCGAGGAT
61290566 ATTACTGATGATGTCCCTCCACGTCACGAGGACCCACTG
131 ATTACTGATGATGTCCCTCCACGTCACGAGGACCCACTG
* *
61290605 TCTCATGGGCCAGATGTCCCCACAGGGCATCTCGAGCATGCTAAGTATGATGATGATCGAGAAAC
1 TCTCATGGGCCAGATGTCCCCACAAGGCATCTCGAGCATGCTAAGTATAATGATGATCGAGAAAC
**
61290670 GATGTGGCACATTCCCTCTTCAGTACCATCTCACCCAATCCACCAATGAGGAGACCCCCGAGGAT
66 GACATGGCACATTCCCTCTTCAGTACCATCTCACCCAATCCACCAATGAGGAGACCCCCGAGGAT
61290735 ATTACTGATGATGTCCCTCCACGTCACGAGGACCCACTG
131 ATTACTGATGATGTCCCTCCACGTCACGAGGACCCACTG
61290774 TCTCA
1 TCTCA
61290779 GCCACCACCA
Statistics
Matches: 166, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
168 113 0.68
169 53 0.32
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (169 bp):
TCTCATGGGCCAGATGTCCCCACAAGGCATCTCGAGCATGCTAAGTATAATGATGATCGAGAAAC
GACATGGCACATTCCCTCTTCAGTACCATCTCACCCAATCCACCAATGAGGAGACCCCCGAGGAT
ATTACTGATGATGTCCCTCCACGTCACGAGGACCCACTG
Found at i:61308087 original size:36 final size:36
Alignment explanation
Indices: 61308066--61308145 Score: 133
Period size: 36 Copynumber: 2.2 Consensus size: 36
61308056 GAAGCCATTG
*
61308066 GTGTGTTTTGGATGGATTAGCTCTTATGAACATCTA
1 GTGTGTTTCGGATGGATTAGCTCTTATGAACATCTA
* *
61308102 GTGTGTTTCGGATGGATTAACTCTTATGAGCATCTA
1 GTGTGTTTCGGATGGATTAGCTCTTATGAACATCTA
61308138 GTGTGTTT
1 GTGTGTTT
61308146 TGGTTAGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.20, C:0.11, G:0.26, T:0.42
Consensus pattern (36 bp):
GTGTGTTTCGGATGGATTAGCTCTTATGAACATCTA
Found at i:61318147 original size:42 final size:42
Alignment explanation
Indices: 61318043--61318135 Score: 177
Period size: 42 Copynumber: 2.2 Consensus size: 42
61318033 GTAGACACAC
*
61318043 GGGCATGTGTCTAGGCCATGTCTGACACACGGCCTGTCCCAT
1 GGGCATGTGTCTAGGCCGTGTCTGACACACGGCCTGTCCCAT
61318085 GGGCATGTGTCTAGGCCGTGTCTGACACACGGCCTGTCCCAT
1 GGGCATGTGTCTAGGCCGTGTCTGACACACGGCCTGTCCCAT
61318127 GGGCATGTG
1 GGGCATGTG
61318136 CTTTGGCCGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.15, C:0.29, G:0.32, T:0.24
Consensus pattern (42 bp):
GGGCATGTGTCTAGGCCGTGTCTGACACACGGCCTGTCCCAT
Found at i:61320217 original size:28 final size:28
Alignment explanation
Indices: 61320186--61320243 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
61320176 TTTAAATATG
61320186 TTCATCTTCCTAATTTCTGAATAATGTA
1 TTCATCTTCCTAATTTCTGAATAATGTA
61320214 TTCATCTTCCTAATTTCTGAATAATGTA
1 TTCATCTTCCTAATTTCTGAATAATGTA
61320242 TT
1 TT
61320244 TCTAAATCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.17, G:0.07, T:0.48
Consensus pattern (28 bp):
TTCATCTTCCTAATTTCTGAATAATGTA
Found at i:61322158 original size:45 final size:45
Alignment explanation
Indices: 61322094--61322291 Score: 180
Period size: 45 Copynumber: 4.4 Consensus size: 45
61322084 CTACAGGTGC
* * *
61322094 AGGAAACGAGAAGTTTCCATGAAGCCGGAAACAGGCTATGGATAA
1 AGGAAACAAGAAGTTTCCATGAAGCCAGAAACAGGATATGGATAA
* * * * *
61322139 AGGAAACAAGAAGTTTCCATGGAGCCGGAAACATGCTATGGATAC
1 AGGAAACAAGAAGTTTCCATGAAGCCAGAAACAGGATATGGATAA
* * ** * * * *
61322184 AGGAAACAAGGAGTTTCCTTGGTGCCATAAACAGGATGTAGATAT
1 AGGAAACAAGAAGTTTCCATGAAGCCAGAAACAGGATATGGATAA
** * * * * *
61322229 AGGAAACAAGAAGTTTCGTTGATGCTAGCAACAGGATATGGACAG
1 AGGAAACAAGAAGTTTCCATGAAGCCAGAAACAGGATATGGATAA
*
61322274 AGGAAACAAGATGTTTCC
1 AGGAAACAAGAAGTTTCC
61322292 CTAATGCAGG
Statistics
Matches: 127, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 127 1.00
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.20
Consensus pattern (45 bp):
AGGAAACAAGAAGTTTCCATGAAGCCAGAAACAGGATATGGATAA
Found at i:61325712 original size:19 final size:19
Alignment explanation
Indices: 61325686--61325726 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
61325676 AAATTATATA
61325686 TTTTTAAATATCT-AAAAT
1 TTTTTAAATATCTGAAAAT
*
61325704 TTTTATAAATATTTGAAAAT
1 TTTT-TAAATATCTGAAAAT
61325724 TTT
1 TTT
61325727 GAAAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
19 8 0.40
20 8 0.40
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
TTTTTAAATATCTGAAAAT
Found at i:61325736 original size:20 final size:20
Alignment explanation
Indices: 61325690--61325737 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
61325680 TATATATTTT
* *
61325690 TAAATATCT-AAAATTTTTA
1 TAAATATTTGAAAATTTTGA
61325709 TAAATATTTGAAAATTTTGA
1 TAAATATTTGAAAATTTTGA
61325729 -AAATTATTT
1 TAAA-TATTT
61325738 TGATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (20 bp):
TAAATATTTGAAAATTTTGA
Found at i:61327665 original size:24 final size:24
Alignment explanation
Indices: 61327637--61327741 Score: 78
Period size: 24 Copynumber: 4.6 Consensus size: 24
61327627 TTAGAAAGAC
* *
61327637 ATGAAAGGTGAAGAGTTAGAGAAA
1 ATGAAAGGTGAAAAGTTAAAGAAA
* *
61327661 ATGAAATGTGAAAAGTTAAAGAAG
1 ATGAAAGGTGAAAAGTTAAAGAAA
* * *
61327685 ATGAAAGATG-GAAGGT-AAG---
1 ATGAAAGGTGAAAAGTTAAAGAAA
* * *
61327704 ATGAAAGGTGGAAGGTTAAGGAAA
1 ATGAAAGGTGAAAAGTTAAAGAAA
61327728 ATGAAAGGT-AAAAG
1 ATGAAAGGTGAAAAG
61327742 GTTGAACATT
Statistics
Matches: 61, Mismatches: 15, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
19 9 0.15
20 3 0.05
21 2 0.03
22 3 0.05
23 7 0.11
24 37 0.61
ACGTcount: A:0.50, C:0.00, G:0.32, T:0.17
Consensus pattern (24 bp):
ATGAAAGGTGAAAAGTTAAAGAAA
Found at i:61327706 original size:19 final size:19
Alignment explanation
Indices: 61327682--61327719 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
61327672 AAAGTTAAAG
61327682 AAGATGAAAGATGGAAGGT
1 AAGATGAAAGATGGAAGGT
*
61327701 AAGATGAAAGGTGGAAGGT
1 AAGATGAAAGATGGAAGGT
61327720 TAAGGAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.39, T:0.16
Consensus pattern (19 bp):
AAGATGAAAGATGGAAGGT
Found at i:61330730 original size:34 final size:34
Alignment explanation
Indices: 61330689--61330756 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
61330679 ATGCCACAAA
61330689 ACTTTTCACATATTTACAATTTTAGTCCATTCAT
1 ACTTTTCACATATTTACAATTTTAGTCCATTCAT
61330723 ACTTTTCACATATTTACAATTTTAGTCCATTCAT
1 ACTTTTCACATATTTACAATTTTAGTCCATTCAT
61330757 TAATTTAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.21, G:0.03, T:0.47
Consensus pattern (34 bp):
ACTTTTCACATATTTACAATTTTAGTCCATTCAT
Found at i:61330770 original size:34 final size:34
Alignment explanation
Indices: 61330696--61330770 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
61330686 AAAACTTTTC
* *
61330696 ACATATTTACAATTTTAGTCCATTCATACTTTTC
1 ACATATTTACAATTTTAGTCCATTCATACATTTA
61330730 ACATATTTACAATTTTAGTCCATTCATTA-ATTTA
1 ACATATTTACAATTTTAGTCCATTCA-TACATTTA
*
61330764 ATATATT
1 ACATATT
61330771 ATGTCTTGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 35 0.95
35 2 0.05
ACGTcount: A:0.33, C:0.16, G:0.03, T:0.48
Consensus pattern (34 bp):
ACATATTTACAATTTTAGTCCATTCATACATTTA
Found at i:61336524 original size:28 final size:28
Alignment explanation
Indices: 61336459--61336559 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
61336449 ATAGTGAATC
*
61336459 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
61336488 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
61336516 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
61336546 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61336560 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:61344471 original size:28 final size:28
Alignment explanation
Indices: 61344406--61344506 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
61344396 ATAGTGAATC
*
61344406 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
61344435 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
61344463 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
61344493 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61344507 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:61347751 original size:40 final size:39
Alignment explanation
Indices: 61347706--61347913 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 39
61347696 CGGATTACAA
*
61347706 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
61347746 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
61347786 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
61347826 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
61347866 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
61347906 CCGGATAT
1 CCGGATAT
61347914 CATTCAATTG
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 1 0.01
40 144 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:61347846 original size:80 final size:80
Alignment explanation
Indices: 61347706--61347913 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 80
61347696 CGGATTACAA
* * *
61347706 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
61347771 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
61347786 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
61347850 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * * * *
61347866 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
61347914 CATTCAATTG
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 109 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:61355883 original size:40 final size:39
Alignment explanation
Indices: 61355838--61356045 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 39
61355828 CGGATTACAA
*
61355838 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
61355878 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
61355918 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
61355958 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
61355998 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
61356038 CCGGATAT
1 CCGGATAT
61356046 CATTCAATTG
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 1 0.01
40 144 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:61355978 original size:80 final size:80
Alignment explanation
Indices: 61355838--61356045 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 80
61355828 CGGATTACAA
* * *
61355838 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
61355903 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
61355918 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
61355982 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * * * *
61355998 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
61356046 CATTCAATTG
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 109 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:61358833 original size:36 final size:36
Alignment explanation
Indices: 61358793--61358866 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
61358783 AGTTAGTCCT
*
61358793 TAGGCTTGTAAAATAAAATTCATGCAATTTCATCCC
1 TAGGCTCGTAAAATAAAATTCATGCAATTTCATCCC
*
61358829 TAGGCTCGTAAAATGAAATTCATGCAATTTCATCCC
1 TAGGCTCGTAAAATAAAATTCATGCAATTTCATCCC
61358865 TA
1 TA
61358867 CCCAAGCCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.32
Consensus pattern (36 bp):
TAGGCTCGTAAAATAAAATTCATGCAATTTCATCCC
Found at i:61366932 original size:17 final size:18
Alignment explanation
Indices: 61366910--61366943 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
61366900 CACGTTGAAG
61366910 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
61366927 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
61366944 CTTCCTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:61368099 original size:29 final size:30
Alignment explanation
Indices: 61368027--61368207 Score: 139
Period size: 29 Copynumber: 6.3 Consensus size: 30
61368017 ACCCCTACAT
*
61368027 ACATGCATAT-GGCCCA-CTAGGCCCAA-TC
1 ACATTCATATAGGCCCATC-AGGCCCAATTC
* * * *
61368055 TCATTTATAT-GGCCCATCCGACCCAATTC
1 ACATTCATATAGGCCCATCAGGCCCAATTC
* *
61368084 ACGTTCATA-AGGCCCATCAGGCCCTATTC
1 ACATTCATATAGGCCCATCAGGCCCAATTC
*
61368113 ACATTCATATA-GCCCATCAGGCGCAATTC
1 ACATTCATATAGGCCCATCAGGCCCAATTC
* **
61368142 ACATTCATATA-ACCCATTGGGCCCAA-TC
1 ACATTCATATAGGCCCATCAGGCCCAATTC
* * * * *
61368170 TCATTTATAT-GGCCCATCTGACCCAAGTC
1 ACATTCATATAGGCCCATCAGGCCCAATTC
61368199 ACATT-ATAT
1 ACATTCATAT
61368208 TCATGCTCAC
Statistics
Matches: 122, Mismatches: 25, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
28 44 0.36
29 77 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (30 bp):
ACATTCATATAGGCCCATCAGGCCCAATTC
Found at i:61368452 original size:16 final size:16
Alignment explanation
Indices: 61368419--61368461 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
61368409 GTAGCCAAAC
61368419 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
* * *
61368435 TTTCGGCTTTTTGGCA
1 TTTCAGCTTTTCGACA
*
61368451 TTTTAGCTTTT
1 TTTCAGCTTTT
61368462 ACCGATCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.12, C:0.19, G:0.16, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:61372646 original size:29 final size:29
Alignment explanation
Indices: 61372606--61372756 Score: 173
Period size: 29 Copynumber: 5.3 Consensus size: 29
61372596 AGGCCCATCT
* *
61372606 CATTTATATGGCCCATCTGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* *
61372635 CGTTCTTATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
*
61372664 CATTCATATGGCCCATCAGCCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
** *
61372693 CATTCATATGGCCCATTGGGCCC-A-TCT
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * *
61372720 CATTTATATGGCCAATCCGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
61372749 CATT-ATAT
1 CATTCATAT
61372757 TCATGCTCAC
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
27 21 0.20
28 6 0.06
29 77 0.74
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:61374976 original size:27 final size:28
Alignment explanation
Indices: 61374919--61374988 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
61374909 AAACTTGTAC
*
61374919 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
61374947 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
61374974 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61374989 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:61374999 original size:27 final size:27
Alignment explanation
Indices: 61374919--61375000 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
61374909 AAACTTGTAC
* * *
61374919 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
61374947 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
61374974 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
61375001 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:61382916 original size:27 final size:28
Alignment explanation
Indices: 61382859--61382928 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
61382849 AAACTTGTAC
*
61382859 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
61382887 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
61382914 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61382929 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:61382939 original size:27 final size:27
Alignment explanation
Indices: 61382859--61382940 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
61382849 AAACTTGTAC
* * *
61382859 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
61382887 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
61382914 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
61382941 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:61389655 original size:43 final size:43
Alignment explanation
Indices: 61389607--61389722 Score: 171
Period size: 43 Copynumber: 2.7 Consensus size: 43
61389597 TATATGATCT
*
61389607 GAACTCATTGAGTTGGTCTGAGTTCATGATATATGTGCCA-TCC
1 GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACT-C
* *
61389650 GAACTCATTGAGTTGGTCTAAGTTCATGATACATGTGCCACTT
1 GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACTC
* *
61389693 GAGCTCATTGAGTTGATCTGAGTTCATGAT
1 GAACTCATTGAGTTGGTCTGAGTTCATGAT
61389723 GTACTTGACA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 65 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (43 bp):
GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACTC
Found at i:61392077 original size:40 final size:40
Alignment explanation
Indices: 61392022--61392249 Score: 332
Period size: 40 Copynumber: 5.7 Consensus size: 40
61392012 TGAATGATAC
* * * *
61392022 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
*
61392062 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
61392102 CCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
61392142 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
61392182 CCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
61392222 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
61392250 TTGTGGTTAT
Statistics
Matches: 172, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 170 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:61400166 original size:43 final size:43
Alignment explanation
Indices: 61400118--61400233 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 43
61400108 TATATGATCT
*
61400118 GAACTCATTGAGTTGGTCTGAGTTCATGATATATGTGCCA-TCC
1 GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACT-C
* * *
61400161 GAACTCATTGAATTGGTTTGAGTTCATGATACATGTGCCACTT
1 GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACTC
* *
61400204 GAGCTCATCGAGTTGGTCTGAGTTCATGAT
1 GAACTCATTGAGTTGGTCTGAGTTCATGAT
61400234 GTACGTGACG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 63 0.98
44 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (43 bp):
GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACTC
Found at i:61402795 original size:40 final size:39
Alignment explanation
Indices: 61402751--61402839 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 39
61402741 CTCATACAGT
*
61402751 CGAAGCTATACCATTTCGCACACGTAGTGCTATTTATAGC
1 CGAAGCTATACCA-ATCGCACACGTAGTGCTATTTATAGC
* *** *
61402791 CGAAGATATTTTGAATCGCACACTTAGTGCTATTTATAGC
1 CGAAGCTA-TACCAATCGCACACGTAGTGCTATTTATAGC
*
61402831 CAAAGCTAT
1 CGAAGCTAT
61402840 TTTGAATCGC
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
39 1 0.03
40 37 0.93
41 2 0.05
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (39 bp):
CGAAGCTATACCAATCGCACACGTAGTGCTATTTATAGC
Found at i:61402841 original size:40 final size:40
Alignment explanation
Indices: 61402766--61402860 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
61402756 CTATACCATT
* *
61402766 TCGCACACGTAGTGCTATTTATAGCCGAAGATATTTTGAA
1 TCGCACACTTAGTGCTATTTATAGCCAAAGATATTTTGAA
*
61402806 TCGCACACTTAGTGCTATTTATAGCCAAAGCTATTTTGAA
1 TCGCACACTTAGTGCTATTTATAGCCAAAGATATTTTGAA
61402846 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
61402861 CAAATGCAGT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (40 bp):
TCGCACACTTAGTGCTATTTATAGCCAAAGATATTTTGAA
Found at i:61403758 original size:20 final size:18
Alignment explanation
Indices: 61403723--61403765 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
61403713 ATATCAAGGT
61403723 CATAAATGTCATTAACCA
1 CATAAATGTCATTAACCA
*
61403741 TATAAATGTCATATTAACCA
1 CATAAATGTC--ATTAACCA
61403761 CATAA
1 CATAA
61403766 GGACCTCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.43
20 12 0.57
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.30
Consensus pattern (18 bp):
CATAAATGTCATTAACCA
Found at i:61407813 original size:48 final size:48
Alignment explanation
Indices: 61407728--61408014 Score: 283
Period size: 48 Copynumber: 6.0 Consensus size: 48
61407718 TGATACTAGG
* * **
61407728 GATATGTGAGCCAGTGTAAGACCATG-CTTGGAGCATGGCATCAACATT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGA-CATGGCATCGGCATT
* * * * *
61407776 TATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
* * * *
61407824 GATATGTGGGCTAGTGTAAGACCATATTTGGGACATGACATCGGC-TT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
* * * *
61407871 CGATATGTGAGCTAGTGTAAGACCATGT-TTGGAGCGTGACATCGACATT
1 -GATATGTGAGCTAGTGTAAGACCATGTCTGGGA-CATGGCATCGGCATT
* * * * * * * *
61407920 TATACGAGAGCTAGTGTAAGACAATGTTTGGGACATGGCATCAGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
* *
61407968 GATATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
61408015 CTTACCCTTT
Statistics
Matches: 192, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
47 5 0.03
48 176 0.92
49 11 0.06
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
Found at i:61407988 original size:144 final size:144
Alignment explanation
Indices: 61407728--61408004 Score: 464
Period size: 144 Copynumber: 1.9 Consensus size: 144
61407718 TGATACTAGG
*
61407728 GATATGTGAGCCAGTGTAAGACCATGCTTGGAGCATGGCATCAACATTTATACGAGAGCTAGTGT
1 GATATGTGAGCCAGTGTAAGACCATGCTTGGAGCATGACATCAACATTTATACGAGAGCTAGTGT
* * *
61407793 AAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGGGCTAGTGTAAGACCATATTTGGGAC
66 AAGACAATGTCTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGAC
61407858 ATGACATCGGCTTC
131 ATGACATCGGCTTC
* * * *
61407872 GATATGTGAGCTAGTGTAAGACCATGTTTGGAGCGTGACATCGACATTTATACGAGAGCTAGTGT
1 GATATGTGAGCCAGTGTAAGACCATGCTTGGAGCATGACATCAACATTTATACGAGAGCTAGTGT
* *
61407937 AAGACAATGTTTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATGTCTGGGAC
66 AAGACAATGTCTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGAC
61408002 ATG
131 ATG
61408005 GCATTGGCAT
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
144 123 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (144 bp):
GATATGTGAGCCAGTGTAAGACCATGCTTGGAGCATGACATCAACATTTATACGAGAGCTAGTGT
AAGACAATGTCTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGAC
ATGACATCGGCTTC
Found at i:61411094 original size:6 final size:6
Alignment explanation
Indices: 61411083--61411110 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
61411073 ATAGAATTGT
61411083 AATAAA AATAAA AATAAA AATAAA AATA
1 AATAAA AATAAA AATAAA AATAAA AATA
61411111 GAATAAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:61412715 original size:17 final size:17
Alignment explanation
Indices: 61412689--61412722 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
61412679 ATGAAGTTAA
61412689 TAATGGAAT-AAATAAT
1 TAATGGAATAAAATAAT
61412705 TAATAGGAATAAAATAAT
1 TAAT-GGAATAAAATAAT
61412723 GATGAGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 5 0.31
18 7 0.44
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (17 bp):
TAATGGAATAAAATAAT
Found at i:61412913 original size:19 final size:19
Alignment explanation
Indices: 61412889--61412957 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
61412879 AGAAGAAAAG
61412889 GGAAAGAAGGAGGAAAGAA
1 GGAAAGAAGGAGGAAAGAA
*
61412908 GGAAAGAA-GAGGGAATGAA
1 GGAAAGAAGGA-GGAAAGAA
* *
61412927 AGAAA-AAGAAAGGAAAGAA
1 GGAAAGAAG-GAGGAAAGAA
61412946 GAGAAAAGAAGG
1 G-G-AAAGAAGG
61412958 GGAGGGCGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 4 0.11
19 26 0.68
20 2 0.05
21 3 0.08
22 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.38, T:0.01
Consensus pattern (19 bp):
GGAAAGAAGGAGGAAAGAA
Found at i:61412921 original size:30 final size:30
Alignment explanation
Indices: 61412881--61412957 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 30
61412871 ATGAGGGAAG
* *
61412881 AAGAAAAGGGAAAGAAGGAGGAAAG-AAGGA
1 AAGAAGAGGGAAAGAAGGA-AAAAGAAAGGA
* *
61412911 AAGAAGAGGGAATGAAAGAAAAAGAAAGGA
1 AAGAAGAGGGAAAGAAGGAAAAAGAAAGGA
*
61412941 AAGAAGA-GAAAAGAAGG
1 AAGAAGAGGGAAAGAAGG
61412958 GGAGGGCGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 11 0.28
30 28 0.72
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.01
Consensus pattern (30 bp):
AAGAAGAGGGAAAGAAGGAAAAAGAAAGGA
Found at i:61415763 original size:18 final size:18
Alignment explanation
Indices: 61415737--61415780 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
61415727 AAAATTTTTT
*
61415737 TGGTCATTTGTTCCCAAG
1 TGGTGATTTGTTCCCAAG
61415755 TGGTGATTTGTTCCCAAG
1 TGGTGATTTGTTCCCAAG
61415773 TGGTGATT
1 TGGTGATT
61415781 GACCCTCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.27, T:0.41
Consensus pattern (18 bp):
TGGTGATTTGTTCCCAAG
Found at i:61418267 original size:40 final size:40
Alignment explanation
Indices: 61418207--61418311 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
61418197 AACTATTGAA
* * * ** *
61418207 TGAAAGCACATACGTTCCCCTGTTTGAACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTATTTGAACTTCAGTAACCC
*
61418247 TGAATGCACATACGTGCCCCTATTTGTACTTCAGTAACCC
1 TGAATGCACATACGTGCCCCTATTTGAACTTCAGTAACCC
* *
61418287 TGAGTGCACTTACGTGCCCCTATTT
1 TGAATGCACATACGTGCCCCTATTT
61418312 ATACTCCGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTATTTGAACTTCAGTAACCC
Found at i:61418324 original size:40 final size:40
Alignment explanation
Indices: 61418207--61418324 Score: 121
Period size: 40 Copynumber: 3.0 Consensus size: 40
61418197 AACTATTGAA
* * * ** *
61418207 TGAAAGCACATACGTTCCCCTGTTTGA-ACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTATTT-ATACTCCGGTAACCC
* * *
61418247 TGAATGCACATACGTGCCCCTATTTGTACTTCAGTAACCC
1 TGAATGCACATACGTGCCCCTATTTATACTCCGGTAACCC
* *
61418287 TGAGTGCACTTACGTGCCCCTATTTATACTCCGGTAAC
1 TGAATGCACATACGTGCCCCTATTTATACTCCGGTAAC
61418325 TTTGAATTGT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.31
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTATTTATACTCCGGTAACCC
Found at i:61427918 original size:49 final size:50
Alignment explanation
Indices: 61427800--61427981 Score: 160
Period size: 49 Copynumber: 3.7 Consensus size: 50
61427790 AGGGTATAAT
* * * * *
61427800 GCCGATGCCATGTCCCAAACATGGTCTTACAGTGGCTCATC-C--ATCC-A
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCACAAATCCGG
* *
61427847 GTCGATGTCATGTCCTAGACATGGTCTTACACTGACTATCA-AAAT-CGAG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTATCACAAATCCG-G
* * * * * ** *
61427896 GCTGATGCGATGTCCCAGACATGGTCTTACACTAACTCTCACGTATCCGT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTATCACAAATCCGG
*
61427946 GCCGATGCCATGTCCTAGACATAGTCTTACACTGAC
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGAC
61427982 ACATCTCGTA
Statistics
Matches: 106, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
46 3 0.03
47 32 0.30
48 2 0.02
49 34 0.32
50 33 0.31
51 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (50 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTATCACAAATCCGG
Found at i:61428055 original size:46 final size:46
Alignment explanation
Indices: 61427849--61428117 Score: 156
Period size: 46 Copynumber: 5.7 Consensus size: 46
61427839 TCCATCCAGT
* * * *
61427849 CGATGTCATGTCCTAGACATGGTCTTACACT-GACTATCAAAATCGAGGC
1 CGATG-CATGTCCCAGACAT-ATCTTACACTAG-CTCTCATAAT-GAGGC
* * * **
61427898 TGATGCGATGTCCCAGACATGGTCTTACACTAACTCTCACGT-ATCCGTGC
1 CGATGC-ATGTCCCAGACAT-ATCTTACACTAGCTCTCA--TAATGAG-GC
* * * * *
61427948 CGATGCCATGTCCTAGACATAGTCTTACACT-G-ACACAT-CTCGTA-GT
1 CGATG-CATGTCCCAGACATA-TCTTACACTAGCTCTCATAAT-G-AGGC
* * *
61427994 CGATGCATGTCCCAGACATATCTTACACTGGCT-TACGTCATGAGGC
1 CGATGCATGTCCCAGACATATCTTACACTAGCTCT-CATAATGAGGC
* * * **
61428040 CGATGCATGTTCCAGACATTTCTTGCACTAGCTCTCATAATGTTGC
1 CGATGCATGTCCCAGACATATCTTACACTAGCTCTCATAATGAGGC
*
61428086 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATATCTTACACTAGC
61428118 GCACAAACAA
Statistics
Matches: 171, Mismatches: 34, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 77 0.45
47 2 0.01
48 4 0.02
49 33 0.19
50 29 0.17
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATATCTTACACTAGCTCTCATAATGAGGC
Found at i:61429975 original size:40 final size:40
Alignment explanation
Indices: 61429916--61430123 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
61429906 CAATTGAATG
* * * *
61429916 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
61429956 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
61429996 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
61430036 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
61430076 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
61430116 ATATCCGG
1 ATATCCGG
61430124 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:61430054 original size:80 final size:80
Alignment explanation
Indices: 61429917--61430123 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
61429907 AATTGAATGA
* * ** * * *
61429917 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
61429982 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
61429995 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
61430060 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
61430077 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
61430124 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:61437972 original size:40 final size:40
Alignment explanation
Indices: 61437913--61438120 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
61437903 CAATTGAATG
* * * *
61437913 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
61437953 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
61437993 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
61438033 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
61438073 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
61438113 ATATCCGG
1 ATATCCGG
61438121 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:61438051 original size:80 final size:80
Alignment explanation
Indices: 61437914--61438120 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
61437904 AATTGAATGA
* * ** * * *
61437914 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
61437979 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
61437992 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
61438057 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
61438074 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
61438121 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:61443287 original size:40 final size:40
Alignment explanation
Indices: 61443242--61443408 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61443232 CGGAATATAA
61443242 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
61443282 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
61443322 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61443362 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61443401 CCGGATAT
1 CCGGATAT
61443409 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61443392 original size:80 final size:79
Alignment explanation
Indices: 61443242--61443408 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
61443232 CGGAATATAA
* *
61443242 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
61443307 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
61443322 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
61443384 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
61443401 CCGGATAT
1 CCGGATAT
61443409 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:61444257 original size:17 final size:19
Alignment explanation
Indices: 61444234--61444279 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
61444224 AAGAAGCATG
61444234 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
61444252 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
61444270 AATCATGCTC
1 AATCATGCTC
61444280 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:61449788 original size:29 final size:29
Alignment explanation
Indices: 61449755--61449886 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
61449745 GTGACGAGAT
61449755 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
61449784 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
61449813 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
61449842 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
61449871 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61449887 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:61454366 original size:40 final size:40
Alignment explanation
Indices: 61454307--61454448 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
61454297 AAATTGAATG
* * *
61454307 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
61454347 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
61454387 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
61454427 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
61454449 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:61454449 original size:40 final size:39
Alignment explanation
Indices: 61454346--61454474 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
61454336 TGCTGGAAAT
* * *
61454346 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
61454386 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
61454426 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
61454466 TATATCCGG
1 TATATCCGG
61454475 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:61461032 original size:39 final size:39
Alignment explanation
Indices: 61460978--61461140 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
61460968 TGTGAATGAA
61460978 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
61461017 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
61461056 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
61461095 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
61461135 TGTGCG
1 TGTGCG
61461141 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:61461156 original size:40 final size:39
Alignment explanation
Indices: 61460978--61461170 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
61460968 TGTGAATGAA
* *
61460978 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
61461017 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
61461056 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
61461095 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
61461135 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
61461171 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:61471585 original size:30 final size:31
Alignment explanation
Indices: 61471551--61471647 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
61471541 AGCTCACTCC
*
61471551 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
61471581 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
61471611 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
61471641 TAGCTCA
1 TAGCTCA
61471648 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:61476207 original size:47 final size:47
Alignment explanation
Indices: 61476144--61476517 Score: 604
Period size: 47 Copynumber: 8.0 Consensus size: 47
61476134 CCCTTCGGGA
* *
61476144 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
61476191 CTTATCACATATATACACCTTCACATCCACCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61476238 CTTATCTCATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
61476285 CTTATAACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61476332 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
61476379 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
61476426 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
61476473 CTTATCACATATATACACTTTCACATTCATCACATTGCCCATTCG
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCG
61476518 ATCTTAAGCT
Statistics
Matches: 304, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 304 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:61476435 original size:22 final size:22
Alignment explanation
Indices: 61476407--61476482 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
61476397 TTTCACATTC
61476407 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
61476429 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
61476453 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
61476476 ATCACAT
1 ATCACAT
61476483 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:61479108 original size:22 final size:20
Alignment explanation
Indices: 61479068--61479108 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
61479058 AGTTCTATTA
*
61479068 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
61479088 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
61479109 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:61483554 original size:27 final size:26
Alignment explanation
Indices: 61483519--61483630 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
61483509 AGCATGGCTG
* *
61483519 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
61483545 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
61483573 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
61483600 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
61483627 CCAG
1 CCAG
61483631 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:61483583 original size:54 final size:54
Alignment explanation
Indices: 61483519--61483630 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
61483509 AGCATGGCTG
*
61483519 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * *
61483573 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
61483627 CCAG
1 CCAG
61483631 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:61485116 original size:24 final size:24
Alignment explanation
Indices: 61485048--61485118 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
61485038 CTAGATTTCC
** *
61485048 TCCCTTATCTGCTCCTAAATACTA
1 TCCCTTATCAACTCCTAAATCCTA
61485072 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
61485096 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
61485119 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.27, C:0.37, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:61486804 original size:48 final size:49
Alignment explanation
Indices: 61486733--61486868 Score: 204
Period size: 48 Copynumber: 2.8 Consensus size: 49
61486723 TAAACTGCTA
*
61486733 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATA-GAAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATATGAAGCTG
* **
61486781 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-ATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATATGAAGCTG
* *
61486829 ATGCCATGTCCCACACATGGTCTTACACTAGCACACATAT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT
61486869 CACCCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
47 1 0.01
48 78 0.99
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATATGAAGCTG
Found at i:61493996 original size:29 final size:29
Alignment explanation
Indices: 61493963--61494122 Score: 167
Period size: 29 Copynumber: 5.5 Consensus size: 29
61493953 GTGACGAGAT
* *
61493963 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
61493992 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
61494021 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* * *
61494050 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* ** * * ***
61494079 CGGCACTGGGTGTGCAAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
61494108 TGGCACTATGTGTGC
1 TGGCACTAAGTGTGC
61494123 GGGCTTAAAT
Statistics
Matches: 113, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 113 1.00
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:61502206 original size:28 final size:29
Alignment explanation
Indices: 61502139--61502239 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
61502129 ATAGTGAATC
* *
61502139 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTGTATA-ATTCAAACT
61502168 CGCACACTTAGTGCTGTATAA-TCAAACT
1 CGCACACTTAGTGCTGTATAATTCAAACT
* * *
61502196 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTGTATAA-TTCAAACT
61502226 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61502240 CGATACCAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 19 0.30
30 19 0.30
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTGTATAATTCAAACT
Found at i:61510245 original size:28 final size:29
Alignment explanation
Indices: 61510178--61510278 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
61510168 ATAGTGAATC
* *
61510178 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTGTATA-ATTCAAACT
61510207 CGCACACTTAGTGCTGTATAA-TCAAACT
1 CGCACACTTAGTGCTGTATAATTCAAACT
* * *
61510235 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTGTATAA-TTCAAACT
61510265 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61510279 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 19 0.30
30 19 0.30
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTGTATAATTCAAACT
Found at i:61515368 original size:27 final size:27
Alignment explanation
Indices: 61515336--61515447 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
61515326 AACCATATAT
* *
61515336 CACATAGGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAATCATTTTAC
*
61515363 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAATCATTTTAC
* *
61515390 CACACAAGGGCAAAATAATCATTTTAT
1 CACATAAGGGCAAAATAATCATTTTAC
* *
61515417 CA-ATTAGGGGCAAAATAGTCATTTTAC
1 CACA-TAAGGGCAAAATAATCATTTTAC
61515444 CACA
1 CACA
61515448 AGCCCGTGTG
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 71 0.97
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAATAATCATTTTAC
Found at i:61523006 original size:42 final size:42
Alignment explanation
Indices: 61522941--61523072 Score: 151
Period size: 44 Copynumber: 3.0 Consensus size: 42
61522931 TCTGACTTGT
* *
61522941 AATCAAATATCGATGCCACTGTCCC-GAACAGGGTCTTACACAA
1 AATCAAATA-CGATGCCAATGTCCCAG-ACATGGTCTTACACAA
* *
61522984 AATCAAATACAATGCCAATGTCCCAGACATGGTCGTACACATA
1 AATCAAATACGATGCCAATGTCCCAGACATGGTCTTACACA-A
*
61523027 AATCATAAGT-CGATGCCAACGTCCCAGACATGGTCTTACACGAA
1 AATCA-AA-TACGATGCCAATGTCCCAGACATGGTCTTACAC-AA
61523071 AA
1 AA
61523073 CACATATCGG
Statistics
Matches: 77, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
42 26 0.34
43 16 0.21
44 33 0.43
45 2 0.03
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.20
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTCCCAGACATGGTCTTACACAA
Found at i:61526565 original size:134 final size:135
Alignment explanation
Indices: 61526411--61526674 Score: 379
Period size: 134 Copynumber: 2.0 Consensus size: 135
61526401 ATTACCAAAG
* *
61526411 TACCCTCGATTTACAGAATTACCATTTTACCCCCGATTTACATAATTACCGTTTTACCCCCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCCCGATT
* * *
61526476 TACATAATTA-TCGTTTTACCCCTAATTTACATAATTACCATTTTACCC-CGATTTACATAATTA
66 TACAGAATTACT-GTTTTACCCCTAATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTA
61526539 CCATTT
130 CCATTT
* * * *
61526545 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCCCGATT
* * * **
61526610 TATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTAC
66 TACAGAATTACTGTTTTACCCCTAATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTAC
61526675 TAAAATACCC
Statistics
Matches: 114, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
134 98 0.86
135 16 0.14
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.40
Consensus pattern (135 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCCCGATTTACAGAATTACCGTTTTACCCCCGATT
TACAGAATTACTGTTTTACCCCTAATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTAC
CATTT
Found at i:61526675 original size:27 final size:27
Alignment explanation
Indices: 61526411--61526674 Score: 325
Period size: 27 Copynumber: 9.8 Consensus size: 27
61526401 ATTACCAAAG
* *
61526411 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACATAATTACCGTTT
*
61526438 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* *
61526465 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* *
61526492 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACATAATTACCGTTT
*
61526519 TACCC-CGATTTACATAATTACCATTT
1 TACCCTCGATTTACATAATTACCGTTT
* *
61526545 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACATAATTACCGTTT
* * *
61526572 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* * *
61526599 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACATAATTACCGTTT
* * *
61526626 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACATAATTACCGTTT
*
61526653 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACATAATTAC
61526675 TAAAATACCC
Statistics
Matches: 218, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
26 25 0.11
27 193 0.89
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACATAATTACCGTTT
Found at i:61526683 original size:27 final size:27
Alignment explanation
Indices: 61526311--61526819 Score: 200
Period size: 27 Copynumber: 18.9 Consensus size: 27
61526301 AATACTTTAG
* * *
61526311 TTTACTAAAATTACCGAAATACCCTTGG
1 TTTAC-AAAATTACCAAAATACCCTCGA
** * *
61526339 TTTGTAAAAATACTAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** ** *
61526366 TTTGTAAAATTACTGAAATACCTTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ** *
61526393 CTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *** *
61526420 TTTACAGAATTACCATTTTACCCCCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* **** *
61526447 TTTACATAATTACCGTTTTACCCCCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * **** *
61526474 TTTACATAATTATCGTTTTACCC-CTAA
1 TTTACAAAATTACCAAAATACCCTC-GA
* ***
61526501 TTTACATAATTACCATTTTACCC-CGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ***
61526527 TTTACATAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
***
61526554 TTTACAAAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *****
61526581 TTTATAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ***** *
61526608 TTTATAGAATTACTGTTTTACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
*****
61526635 TTTACAAAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
61526662 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
** *
61526689 TTTGTAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
61526715 GTTTGTAAAATTACCAAAATACCCTTGG
1 -TTTACAAAATTACCAAAATACCCTCGA
*** * *
61526743 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
**
61526770 TTTGTAAAATTACCAAAATACCCT-GA
1 TTTACAAAATTACCAAAATACCCTCGA
*
61526796 TTTACAAAGTTA-CAGAAATACCCT
1 TTTACAAAATTACCA-AAATACCCT
61526820 TGACTTTTTA
Statistics
Matches: 411, Mismatches: 65, Indels: 12
0.84 0.13 0.02
Matches are distributed among these distances:
25 2 0.00
26 44 0.11
27 362 0.88
28 3 0.01
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:61526687 original size:54 final size:54
Alignment explanation
Indices: 61526357--61526674 Score: 309
Period size: 54 Copynumber: 5.9 Consensus size: 54
61526347 AATACTAAAA
** *** * * ** ***
61526357 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
* ** * * *
61526411 TACCCTCGATTTACAGAATTACCATTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
* * * *
61526465 TACCCCCGATTTACATAATTA-TCGTTTTACCC-CTAATTTACATAATTACCATTT
1 TACCCTCGATTTACAAAATTACT-GTTTTACCCTC-GATTTACAAAATTACCATTT
* **
61526519 TACCC-CGATTTACATAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
* * * * **
61526572 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
*
61526626 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTAC
61526675 TAAAATACCC
Statistics
Matches: 218, Mismatches: 41, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
53 47 0.22
54 171 0.78
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
Found at i:61526698 original size:54 final size:54
Alignment explanation
Indices: 61526311--61526808 Score: 230
Period size: 54 Copynumber: 9.2 Consensus size: 54
61526301 AATACTTTAG
*** * * * * * *
61526311 TTTACTAAAATTACCGAAATACCCTTGGTTTGTAAAAATACTAAAATACCCTCGA
1 TTTA-TAAAATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTTGA
* * *** * * * * *
61526366 TTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCTCGA
1 TTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTTGA
* * * * * * **** **
61526420 TTTACAGAATTACCATTTTACCCCCGATTTACATAATTACCGTTTTACCCCCGA
1 TTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTTGA
* * * * * * *** *
61526474 TTTACATAATTATCGTTTTACCC-CTAATTTACATAATTACCATTTTACCC-CGA
1 TTTATAAAATTACCGTTTTACCCTC-GATTTATAAAATTACCAAAATACCCTTGA
* * * * *** *
61526527 TTTACATAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGA
1 TTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTTGA
* * * *****
61526581 TTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGA
1 TTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTTGA
* * * * *
61526635 TTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTTGA
* **** * * *
61526689 TTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGG
1 TTTATAAAATTACCGTTTTACCCTCGA-TTTATAAAATTACCAAAATACCCTTGA
* * *** * *
61526743 TTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCC-TGA
1 TTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTTGA
* *
61526796 TTTACAAAGTTAC
1 TTTATAAAATTAC
61526809 AGAAATACCC
Statistics
Matches: 364, Mismatches: 74, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
53 61 0.17
54 298 0.82
55 5 0.01
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (54 bp):
TTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTTGA
Found at i:61526700 original size:81 final size:81
Alignment explanation
Indices: 61526344--61526701 Score: 261
Period size: 81 Copynumber: 4.4 Consensus size: 81
61526334 CTTGGTTTGT
* * *** * * ** *
61526344 AAAAATACTAAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACCAT
**
61526409 AGTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * *** * * * * * * * *
61526425 AGAATTACCATTTTACCCCCGATTTACATAATTACCGTTTTACCCCCGATTTACATAATTATCGT
1 AAAATTACTAAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACCAT
*
61526490 TTTACCC-CTAATTTAC
66 TTTACCCTC-GATTTAC
* * *** * * **
61526506 ATAATTACCATTTTACCC-CGATTTACATAATTACCATTTTACCCTCGATTTACAAAATTACCAT
1 AAAATTACTAAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACCAT
*
61526570 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* **** * * **
61526586 AGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGT
1 AAAATTACTAAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACCAT
61526651 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * *
61526667 AAAATTACTAAAATACCCTTGGTTTGTAAAATTAC
1 AAAATTACTAAAATACCCTCGATTTATAAAATTAC
61526702 CAAAATACCC
Statistics
Matches: 220, Mismatches: 54, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
80 69 0.31
81 151 0.69
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAAAATTACCAT
TTTACCCTCGATTTAC
Found at i:61526711 original size:81 final size:81
Alignment explanation
Indices: 61526545--61526808 Score: 226
Period size: 81 Copynumber: 3.3 Consensus size: 81
61526535 ATTACCATTT
* * ***
61526545 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTCGATT
* * *****
61526610 TATAGAATTACTGTTT
66 TGTAAAATTACCAAAA
** * * * *
61526626 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTCGATT
61526691 TGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* ** *** * * * * * *
61526707 TACCCCT-AGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCTTGA-TTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTCGAT
61526771 TTGTAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
*
61526788 TACCC-TGATTTACAAAGTTAC
1 TACCCTTGATTTACAAAATTAC
61526809 AGAAATACCC
Statistics
Matches: 142, Mismatches: 39, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
80 12 0.08
81 130 0.92
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (81 bp):
TACCCTTGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACTGAAATACCCTCGATT
TGTAAAATTACCAAAA
Found at i:61526832 original size:54 final size:55
Alignment explanation
Indices: 61526626--61526904 Score: 212
Period size: 54 Copynumber: 5.1 Consensus size: 55
61526616 ATTACTGTTT
* *** * ** *
61526626 TACCCTTGATTTACAAAATTACTGTTTTACCCTCG-ATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACAGAAATACCCTTGAATTTGTAAAATTACCAAAA
* ** * *
61526680 TACCCTTGGTTTGTAAAATTACCA-AAATACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTA-CAGAAATACCCTTGAATTTGTAAAATTACCAAAA
* *** * *
61526734 TACCCTTGGTTTGTGAAATTACCGAAATACCC-TCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACAGAAATACCCTTGAATTTGTAAAATTACCAAAA
* * * **
61526788 TACCC-TGATTTACAAAGTTACAGAAATACCCTTGACTTTTTAAAAATTATAAAAA
1 TACCCTTGATTTACAAAATTACAGAAATACCCTTGAATTTGT-AAAATTACCAAAA
* * * * *
61526843 TACCATT-AGTTTACAAAATTACTGAAATACCCTTG-GTTTGTAGATTTACCAAAA
1 TACCCTTGA-TTTACAAAATTACAGAAATACCCTTGAATTTGTAAAATTACCAAAA
*
61526897 CACCCTTG
1 TACCCTTG
61526905 TAGGATGAAA
Statistics
Matches: 178, Mismatches: 38, Indels: 17
0.76 0.16 0.07
Matches are distributed among these distances:
53 22 0.12
54 110 0.62
55 21 0.12
56 25 0.14
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (55 bp):
TACCCTTGATTTACAAAATTACAGAAATACCCTTGAATTTGTAAAATTACCAAAA
Found at i:61526870 original size:27 final size:27
Alignment explanation
Indices: 61526662--61526903 Score: 182
Period size: 27 Copynumber: 8.9 Consensus size: 27
61526652 TTACCCTCGA
* * *
61526662 TTTACAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
61526689 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
61526716 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTAG
* * * * *
61526743 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTATAAAATTACCAAAATACCCTTAG
* *
61526770 TTTGTAAAATTACCAAAATACCCTGA-
1 TTTATAAAATTACCAAAATACCCTTAG
* * *
61526796 TTTACAAAGTTA-CAGAAATACCCTTGAC
1 TTTATAAAATTACCA-AAATACCCTT-AG
* ** *
61526824 TTTTTAAAAATTATAAAAATACCATTAG
1 TTTAT-AAAATTACCAAAATACCCTTAG
* ** *
61526852 TTTACAAAATTACTGAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTAG
* * * *
61526879 TTTGTAGATTTACCAAAACACCCTT
1 TTTATAAAATTACCAAAATACCCTT
61526904 GTAGGATGAA
Statistics
Matches: 171, Mismatches: 39, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
25 2 0.01
26 18 0.11
27 128 0.75
28 7 0.04
29 15 0.09
30 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCTTAG
Found at i:61526965 original size:27 final size:27
Alignment explanation
Indices: 61526934--61527024 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
61526924 TACCCCTATT
*
61526934 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
61526961 GGGTAAAGTGACCGTAAAG-CCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
*
61526987 AGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
61527014 TGGTAAAATGA
1 AGGTAAAATGA
61527025 TGAATATGCC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.41
27 33 0.59
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:61527925 original size:25 final size:26
Alignment explanation
Indices: 61527828--61527925 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
61527818 GAGGAAGTGC
* *
61527828 AAAAGGGATTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
61527854 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
61527880 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
61527906 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
61527926 ATTAAAGAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 10 0.15
26 56 0.85
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:61528129 original size:42 final size:42
Alignment explanation
Indices: 61528070--61528161 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
61528060 TAGTCTCCCC
* ** *
61528070 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
61528112 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
61528154 AAATGGGC
1 AAATGGGC
61528162 CTATAGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:61528255 original size:31 final size:31
Alignment explanation
Indices: 61528185--61528259 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
61528175 CATTTACAGT
**
61528185 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTTGGCCCAGTGAAATGATTTATGA
*
61528216 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTTGGCCCAGTGAAATGATTTATGA
61528247 AAAGGCTTTGGCC
1 AAAGGCTTTGGCC
61528260 GAGTAACCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGAAATGATTTATGA
Found at i:61533659 original size:47 final size:48
Alignment explanation
Indices: 61533588--61533716 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 48
61533578 AAGCTATAAT
* * * *
61533588 GCCGATGGCATGTCTCAGACATGGTCTTACACTGGC-TC-AACCATC-AT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACATCGAA--ATCGAG
* *
61533635 GTCGATGCCATGTCCCAGACATGGTCTTATACTGACTATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ATCGAAATCGAG
* *
61533684 GCCAACGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
61533717 AACACCTTTA
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
47 31 0.46
48 3 0.04
49 32 0.47
50 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACATCGAAATCGAG
Found at i:61537841 original size:41 final size:40
Alignment explanation
Indices: 61537693--61537830 Score: 213
Period size: 40 Copynumber: 3.4 Consensus size: 40
61537683 ATAATAGCTC
*
61537693 GCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTA
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTA
* *
61537733 GCACAATTGCCTTCGGGAATTAACCCGGATTTGGTAACTC
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTA
* *
61537773 GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTCACTTA
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTGGTAAC-TA
*
61537814 GCACAAAAGCCTTCGGG
1 GCACAAATGCCTTCGGG
61537831 GCTTAGCCCG
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 72 0.81
41 17 0.19
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTA
Found at i:61541770 original size:28 final size:28
Alignment explanation
Indices: 61541738--61541793 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
61541728 GGAAAGAAGT
61541738 ACTCATGTAATGGTATGTTCAAACTAAG
1 ACTCATGTAATGGTATGTTCAAACTAAG
61541766 ACTCATGTAATGGTATGTTCAAACTAAG
1 ACTCATGTAATGGTATGTTCAAACTAAG
61541794 TATTAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (28 bp):
ACTCATGTAATGGTATGTTCAAACTAAG
Found at i:61544385 original size:33 final size:33
Alignment explanation
Indices: 61544343--61544408 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
61544333 AAACAAGTTT
61544343 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
1 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
61544376 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
1 ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
61544409 TTAGAATAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.42
Consensus pattern (33 bp):
ATAATGAAGGGTTGTTTTAATTGTTAGGTTAAG
Found at i:61547713 original size:48 final size:47
Alignment explanation
Indices: 61547637--61547802 Score: 165
Period size: 48 Copynumber: 3.5 Consensus size: 47
61547627 AGGGTAAATT
* *
61547637 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCTAGACATGCTCTTACACTGGCTC-CATGTCGAG
* * * * *
61547685 GCTGATGCCATGTCCTAGACATGTTCTTACACTAGCTCCA-GTCACAAT
1 GCCGATGCCATGTCCTAGACATGCTCTTACACTGGCTCCATGT--CGAG
* * * * *
61547733 ACCGATGCCATATCCCAGACATGCTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCTAGACATGCTCTTACACTGGCTC-CAT-GTCGAG
61547781 GCCGATGCCATGTCCTAGACAT
1 GCCGATGCCATGTCCTAGACAT
61547803 TGTAACACCC
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
46 2 0.02
47 2 0.02
48 87 0.93
49 2 0.02
51 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCTAGACATGCTCTTACACTGGCTCCATGTCGAG
Done.