Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 213 of 345
Found at i:61549755 original size:43 final size:43
Alignment explanation
Indices: 61549708--61549825 Score: 182
Period size: 43 Copynumber: 2.7 Consensus size: 43
61549698 TAGCTAAAGT
*
61549708 TATCTGATTTCGCACACTTAGTGCCAATGTATTTAGCCGAAGC
1 TATCTGATCTCGCACACTTAGTGCCAATGTATTTAGCCGAAGC
* * *
61549751 TATCTGGTCTCGCACACTTAGTGCCAATATATTTAGCCGGAGC
1 TATCTGATCTCGCACACTTAGTGCCAATGTATTTAGCCGAAGC
*
61549794 TATCTCAGTCTCGCACACTTAGTGCCAATGTA
1 TATCTGA-TCTCGCACACTTAGTGCCAATGTA
61549826 CAATATATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
43 44 0.66
44 23 0.34
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (43 bp):
TATCTGATCTCGCACACTTAGTGCCAATGTATTTAGCCGAAGC
Found at i:61551986 original size:43 final size:44
Alignment explanation
Indices: 61551908--61552059 Score: 177
Period size: 43 Copynumber: 3.4 Consensus size: 44
61551898 ATCTCAATTA
* *
61551908 CGCACACTAAGTGCCAATATATGTATACAGCCGAAGTTAT-TTGATCT
1 CGCACACTTAGTGCCAATATAT-T-T--AGCCGAAGCTATCTTGATCT
*
61551955 CGCATACTTAGTGCCAA-AGTATTTAGCCGAAGCTATCTTG-TCT
1 CGCACACTTAGTGCCAATA-TATTTAGCCGAAGCTATCTTGATCT
*
61551998 CGCACACTTAGTGCCAATATATTTAGCTGAAGCTATCTT-AGTCT
1 CGCACACTTAGTGCCAATATATTTAGCCGAAGCTATCTTGA-TCT
*
61552042 CACACACTTAGTGCCAAT
1 CGCACACTTAGTGCCAAT
61552060 CTACAATATA
Statistics
Matches: 94, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
43 49 0.52
44 24 0.26
45 1 0.01
46 2 0.02
47 18 0.19
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
CGCACACTTAGTGCCAATATATTTAGCCGAAGCTATCTTGATCT
Found at i:61562326 original size:48 final size:48
Alignment explanation
Indices: 61562274--61562779 Score: 663
Period size: 48 Copynumber: 10.6 Consensus size: 48
61562264 ATGTCAATGT
* * * **
61562274 CGATGCCATGTCCCAGACATGGTCTTACATTAGCACACATATCAGTAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * * *
61562322 CGATGCCATGTCCCAAACATCGTCTTACATTGGTTCACATATCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
61562370 CGATGCCATGTCCCAAACATGGTCTTACACTGGTTCACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
61562418 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCCACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * * **
61562466 TGATGCCATATCCCAAACATGGTCTTACACTGGCTCACATATTAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
*
61562514 CGATGCCATGTCCCAGACATGGTCTTACACTGGGTCACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
*
61562562 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
61562610 CGATGCCATGTCCCAGACATGGTATTACACTGGCTCACATATCAACAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * * ***
61562658 CAACGCTATGTCTCAGACATGGTCTTACACTGGCTCACATATCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * * * **
61562706 CGATGCCATGTCCTAGACATGTTCTTACAC-GGGTCTCATATCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
61562753 CGATGCCATGTCCCAGACATGGTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
61562780 TACGGGACCT
Statistics
Matches: 407, Mismatches: 51, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
47 38 0.09
48 369 0.91
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
Found at i:61565485 original size:24 final size:24
Alignment explanation
Indices: 61565455--61565626 Score: 136
Period size: 24 Copynumber: 7.1 Consensus size: 24
61565445 AAGTGTGTAT
61565455 ATATGTGATAAGGCCTAATGGCCG
1 ATATGTGATAAGGCCTAATGGCCG
61565479 ATATGTGATAAGGCCTAATGGCCG
1 ATATGTGATAAGGCCTAATGGCCG
* *** ***
61565503 --ATGTGATGAATGTGAAAGTGTGTAT
1 ATATGTGAT-AAGGCCTAA-TG-GCCG
61565528 ATATGTGATAAGGCCTAATGGCCG
1 ATATGTGATAAGGCCTAATGGCCG
* *** ***
61565552 --ATGTGATGAATGTGAAAGTGTGTAT
1 ATATGTGAT-AAGGCCTAA-TG-GCCG
61565577 ATATGTGATAAGGCCTAATGGCCG
1 ATATGTGATAAGGCCTAATGGCCG
61565601 ATATGTGATAAGGCCTAATGGCCG
1 ATATGTGATAAGGCCTAATGGCCG
61565625 AT
1 AT
61565627 GTGATGAATG
Statistics
Matches: 110, Mismatches: 28, Indels: 20
0.70 0.18 0.13
Matches are distributed among these distances:
22 14 0.13
23 10 0.09
24 56 0.51
25 6 0.05
26 10 0.09
27 14 0.13
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (24 bp):
ATATGTGATAAGGCCTAATGGCCG
Found at i:61565501 original size:73 final size:73
Alignment explanation
Indices: 61565406--61565553 Score: 296
Period size: 73 Copynumber: 2.0 Consensus size: 73
61565396 TGAGATATAT
61565406 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
61565471 AATGGCCG
66 AATGGCCG
61565479 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
61565544 AATGGCCG
66 AATGGCCG
61565552 AT
1 AT
61565554 GTGATGAATG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.29
Consensus pattern (73 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
AATGGCCG
Found at i:61565534 original size:49 final size:49
Alignment explanation
Indices: 61565479--61565900 Score: 329
Period size: 49 Copynumber: 8.2 Consensus size: 49
61565469 CTAATGGCCG
61565479 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
61565528 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
* * *
61565577 ATATGTGATAAGGCCTAATGGCCGATATGTGATAAGGCCTAATG-GCCGATGTGATGAAT
1 ATATGTGATAAGGCCTAATGGCCG--ATGTGAT---G---AATGTG--AAAGTG-TGTAT
* * * ** * *
61565636 GTGAAAGTGTGTATATATGTG-ATAA-GGCCTAATG-GCCGATGTGATGAATGAGAAGGTGTAT
1 AT---A-TGTG-ATA-A-G-GCCTAATGGCC-GATGTGATGA-ATG-TGAA--AG--TGTGTAT
* * *
61565697 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
* * *
61565746 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
*
61565795 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
* * * * * * *
61565842 ATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
*
61565889 AAATGTGATAAG
1 ATATGTGATAAG
61565901 TCCCGAAGGG
Statistics
Matches: 308, Mismatches: 35, Indels: 62
0.76 0.09 0.15
Matches are distributed among these distances:
47 56 0.18
49 165 0.54
51 8 0.03
53 4 0.01
54 10 0.03
55 8 0.03
56 4 0.01
57 9 0.03
58 8 0.03
59 5 0.02
60 3 0.01
61 5 0.02
62 2 0.01
63 5 0.02
64 6 0.02
65 5 0.02
66 4 0.01
67 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT
Found at i:61565544 original size:122 final size:122
Alignment explanation
Indices: 61565403--61565722 Score: 617
Period size: 122 Copynumber: 2.6 Consensus size: 122
61565393 GTATGAGATA
61565403 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
61565468 CCTAATGGCCGATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
66 CCTAATGGCCGATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
61565525 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
61565590 CCTAATGGCCGATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
66 CCTAATGGCCGATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
61565647 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAG-AAG-GTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
61565710 CCTAATGGCCGAT
66 CCTAATGGCCGAT
61565723 GTGATGAATG
Statistics
Matches: 197, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
120 32 0.16
121 3 0.02
122 162 0.82
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (122 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:61565605 original size:73 final size:73
Alignment explanation
Indices: 61565528--61565675 Score: 296
Period size: 73 Copynumber: 2.0 Consensus size: 73
61565518 AAGTGTGTAT
61565528 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
61565593 AATGGCCG
66 AATGGCCG
61565601 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
61565666 AATGGCCG
66 AATGGCCG
61565674 AT
1 AT
61565676 GTGATGAATG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.29
Consensus pattern (73 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
AATGGCCG
Found at i:61565712 original size:96 final size:96
Alignment explanation
Indices: 61565601--61565900 Score: 444
Period size: 96 Copynumber: 3.1 Consensus size: 96
61565591 CTAATGGCCG
61565601 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
61565666 AATGGCCGATGTGATGAATGAGAAGGTGTAT
66 AATGGCCGATGTGATGAATGAGAAGGTGTAT
* * *
61565697 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
61565762 AATGGCCGATGTGATGAATGAGAAGGTGTATAT
66 AATGGCCGATGTGATGAATGAGAAGGTG--TAT
* * *
61565795 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAGGGCCG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
* * * * *
61565858 AGTGGCCAAAGTGATGGATGTGGAA-GTGTAT
66 AATGGCCGATGTGATGAATG-AGAAGGTGTAT
*
61565889 AAATGTGATAAG
1 ATATGTGATAAG
61565901 TCCCGAAGGG
Statistics
Matches: 186, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
94 14 0.08
96 128 0.69
97 3 0.02
98 41 0.22
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (96 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGAGAAGGTGTAT
Found at i:61565771 original size:145 final size:144
Alignment explanation
Indices: 61565601--61565900 Score: 451
Period size: 145 Copynumber: 2.1 Consensus size: 144
61565591 CTAATGGCCG
* *
61565601 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTATATATATGTGATAAGGCCT
* * * * *
61565666 AATGGCCGATGTGATGAATGAGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCAATGTGATGAATGAGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAAGTGATGAA
61565731 TG-AGAAGGTGTATA
131 TGTAGAA-GTGTATA
*
61565745 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTATATATATGTGATAAGGCC
1 -ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTATATATATGTGATAAGGCC
* * * *
61565810 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAAAGTGATGG
65 TAATGGCCAATGTGATGAATGAGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAAGTGATGA
*
61565875 ATGTGGAAGTGTATA
130 ATGTAGAAGTGTATA
61565890 A-ATGTGATAAG
1 ATATGTGATAAG
61565901 TCCCGAAGGG
Statistics
Matches: 141, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
143 10 0.07
144 1 0.01
145 127 0.90
146 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (144 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCAATGTGATGAATGAGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAAGTGATGAA
TGTAGAAGTGTATA
Found at i:61571667 original size:27 final size:26
Alignment explanation
Indices: 61571632--61571743 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
61571622 AGCATGGCTG
* *
61571632 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
61571658 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
61571686 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
61571713 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
61571740 CCAG
1 CCAG
61571744 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:61571691 original size:54 final size:54
Alignment explanation
Indices: 61571632--61571743 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
61571622 AGCATGGCTG
*
61571632 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * *
61571686 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
61571740 CCAG
1 CCAG
61571744 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:61573188 original size:24 final size:24
Alignment explanation
Indices: 61573173--61573231 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
61573163 CCTTATCTGT
61573173 TCCTAAATCCTATCCCTTATCAAC
1 TCCTAAATCCTATCCCTTATCAAC
*
61573197 TCCTAAATCCTATCCCTTGTCAAC
1 TCCTAAATCCTATCCCTTATCAAC
61573221 TCCTAAATCCT
1 TCCTAAATCCT
61573232 CTCTTGACAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.27, C:0.37, G:0.02, T:0.34
Consensus pattern (24 bp):
TCCTAAATCCTATCCCTTATCAAC
Found at i:61573545 original size:30 final size:31
Alignment explanation
Indices: 61573511--61573607 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
61573501 AGCTCACTCC
*
61573511 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
61573541 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
61573571 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
61573601 TAGCTCA
1 TAGCTCA
61573608 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:61575945 original size:29 final size:28
Alignment explanation
Indices: 61575857--61575955 Score: 85
Period size: 29 Copynumber: 3.4 Consensus size: 28
61575847 TACTCAATCA
* *
61575857 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
61575886 CGCACACATAGTGCCATATAGTCCCAA-CT
1 CGCACACTTAGTGCCGTACA-T-TCAAGCT
61575915 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
61575944 CGCACACTTAGT
1 CGCACACTTAGT
61575956 TCCAATCTCG
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
27 2 0.04
28 6 0.11
29 45 0.80
30 3 0.05
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:61582086 original size:39 final size:39
Alignment explanation
Indices: 61582032--61582194 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
61582022 TGTGAATGAA
61582032 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
61582071 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
61582110 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
61582149 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
61582189 TGTGCG
1 TGTGCG
61582195 GGTTACCATA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:61585334 original size:29 final size:29
Alignment explanation
Indices: 61585301--61585432 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
61585291 GTGACGAGAT
61585301 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
61585330 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
61585359 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * * **
61585388 TGGAACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
61585417 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61585433 AAATCGAGTA
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:61589392 original size:40 final size:40
Alignment explanation
Indices: 61589347--61589513 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61589337 CGGAATATAA
61589347 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
61589387 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
61589427 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61589467 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61589506 CCGGATAT
1 CCGGATAT
61589514 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61589497 original size:80 final size:79
Alignment explanation
Indices: 61589347--61589513 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
61589337 CGGAATATAA
* *
61589347 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
61589412 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
61589427 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
61589489 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
61589506 CCGGATAT
1 CCGGATAT
61589514 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:61590361 original size:17 final size:19
Alignment explanation
Indices: 61590338--61590383 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
61590328 AAGAAGCATG
61590338 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
61590356 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
61590374 AATCATGCTC
1 AATCATGCTC
61590384 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:61595757 original size:41 final size:41
Alignment explanation
Indices: 61595712--61595829 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
61595702 TGAAAGATAA
61595712 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
61595753 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61595783 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61595824 ATGTAG
1 ATGTAG
61595830 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:61595768 original size:71 final size:71
Alignment explanation
Indices: 61595680--61595843 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61595670 GAGATGTATC
61595680 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61595745 AGGACA
66 AGGACA
61595751 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61595816 AGGACA
66 AGGACA
61595822 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
61595844 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:61602877 original size:67 final size:68
Alignment explanation
Indices: 61602769--61602924 Score: 278
Period size: 67 Copynumber: 2.3 Consensus size: 68
61602759 GAGATGTATC
61602769 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAG---CGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61602834 AGGACA
63 AGGACA
61602840 CCATGTAGACAAGAGAG-GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG
1 CCATGTAGACAAGAGAGCGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG
61602904 ACA
66 ACA
61602907 CCATGTAGACAAGAGAGC
1 CCATGTAGACAAGAGAGC
61602925 TACGAGACAA
Statistics
Matches: 84, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
67 67 0.80
71 17 0.20
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.19
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG
ACA
Found at i:61604552 original size:50 final size:50
Alignment explanation
Indices: 61604477--61604862 Score: 343
Period size: 50 Copynumber: 7.7 Consensus size: 50
61604467 GTGAGTCACG
*
61604477 TGTGTAGTGCTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * * **
61604527 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCG-TT-A-ACTTCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCG--CA
* * * * * * * * * *
61604576 TGTGTGTAGTTCTAATTGTAGGCTACTAAGTGTATCAGATGGCTAAGTCACG
1 --TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
**
61604628 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * * * * *
61604678 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-CATTAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--T-AGGTCGCA
* * * * * * *
61604729 TGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * *
61604779 TGTGTAGTACTAAGTGCAGGCTAGTACGTGTACCAGATTGATAGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* *
61604829 TGTGTAGTACTAAGTGCA-GCTACTTTGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
61604863 AAGAGCTTCA
Statistics
Matches: 265, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
47 4 0.02
48 1 0.00
49 21 0.08
50 166 0.63
51 65 0.25
52 5 0.02
54 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
Found at i:61604661 original size:101 final size:101
Alignment explanation
Indices: 61604476--61604861 Score: 261
Period size: 101 Copynumber: 3.8 Consensus size: 101
61604466 TGTGAGTCAC
* * * *
61604476 GTGTGTAGTGCTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTGCTAAGTGCAGGCTACTAAGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAG
* *
61604541 TGTAGGCTACTATGCGTACCCGTTAACTTCGATCAT
66 TGCAGGCTACTATCCGTACCCGTTAACTTCGATCAT
* * * * * *
61604577 GTGTGTAGTTCTAATTGTAGGCTACTAAGTGTATCAGATGGCTAAGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTGCTAAGTGCAGGCTACTAAGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAG
* **
61604642 TGCAGGCTACTA-CCTGTACCAGATTGATAGGTCG--CA-
66 TGCAGGCTACTATCC-GTACCCG-TT-A-ACTTCGATCAT
* * * * ** *
61604678 -TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-CATTAACTTCAA-TCACGTGTGTAGTACT
1 GTGTGTAGTGCTAAGTGCAGGCTACTAAGTGTACCAGATGGA--T-AAGTCACATGTGTAGTACT
* ** * * * ** * *
61604740 AAGTGTAGGCTACTATGTGTATCAGAT-GGTT-AAGTCAC
63 AAGTGCAGGCTACTATCCGTACCCGTTAACTTCGA-TCAT
* * * * * **
61604778 GTGTGTAGTACTAAGTGCAGGCTAGTACGTGTACCAGATTGATAGGTCGTATGTGTAGTACTAAG
1 GTGTGTAGTGCTAAGTGCAGGCTACTAAGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAG
* *
61604843 TGCA-GCTACTTTGCGTACC
66 TGCAGGCTACTATCCGTACC
61604862 AAAGAGCTTC
Statistics
Matches: 224, Mismatches: 46, Indels: 32
0.74 0.15 0.11
Matches are distributed among these distances:
97 2 0.01
99 17 0.08
100 50 0.22
101 140 0.62
102 10 0.04
103 1 0.00
104 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (101 bp):
GTGTGTAGTGCTAAGTGCAGGCTACTAAGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAG
TGCAGGCTACTATCCGTACCCGTTAACTTCGATCAT
Found at i:61604747 original size:151 final size:151
Alignment explanation
Indices: 61604470--61604861 Score: 651
Period size: 151 Copynumber: 2.6 Consensus size: 151
61604460 ATCCATTGTG
* *
61604470 AGTCACGTGTGTAGTGCTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * * * *
61604535 ACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTCGATCATGTGTGTAGTTCTAATTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCAATCACGTGTGTAGTACTAAGTGTAGGCT
61604600 ACTAAGTGTATCAGATGGCTA
131 ACTAAGTGTATCAGATGGCTA
*
61604621 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
61604686 ACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCAATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCAATCACGTGTGTAGTACTAAGTGTAGGCT
* *
61604751 ACTATGTGTATCAGATGGTTA
131 ACTAAGTGTATCAGATGGCTA
* *
61604772 AGTCACGTGTGTAGTACTAAGTGCAGGCTAGTACGTGTACCAGATTGATAGGTCGTATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
61604837 ACTAAGTGCA-GCTACTTTGCGTACC
66 ACTAAGTGCAGGCTACTATGCGTACC
61604862 AAAGAGCTTC
Statistics
Matches: 226, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
150 14 0.06
151 212 0.94
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCAATCACGTGTGTAGTACTAAGTGTAGGCT
ACTAAGTGTATCAGATGGCTA
Found at i:61605085 original size:16 final size:16
Alignment explanation
Indices: 61605064--61605095 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
61605054 AGAATGGAGT
61605064 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
61605080 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
61605096 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:61609001 original size:27 final size:27
Alignment explanation
Indices: 61608971--61609154 Score: 242
Period size: 27 Copynumber: 6.8 Consensus size: 27
61608961 ATTAAGAAAG
* ***
61608971 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
61608998 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
61609025 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
61609052 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
61609079 TATCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
61609106 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
61609133 TACCCTCGATTTACAGAATTAC
1 TACCCTCGATTTACAGAATTAC
61609155 TGAAATACCC
Statistics
Matches: 139, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:61609018 original size:54 final size:54
Alignment explanation
Indices: 61608971--61609153 Score: 285
Period size: 54 Copynumber: 3.4 Consensus size: 54
61608961 ATTAAGAAAG
* **
61608971 TACCCTCGATTTACAAAATTATTGTTTTACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTATCATTTTACCCTTGATTTATAGAATTACCATTT
* * * * *
61609025 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCATTTTACCCTTGATTTATAGAATTACCATTT
*
61609079 TATCCTCGATTTACAGAATTATCATTTTACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTATCATTTTACCCTTGATTTATAGAATTACCATTT
61609133 TACCCTCGATTTACAGAATTA
1 TACCCTCGATTTACAGAATTA
61609154 CTGAAATACC
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 114 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.43
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTATCATTTTACCCTTGATTTATAGAATTACCATTT
Found at i:61609072 original size:81 final size:81
Alignment explanation
Indices: 61608971--61609153 Score: 294
Period size: 81 Copynumber: 2.3 Consensus size: 81
61608961 ATTAAGAAAG
* * * *
61608971 TACCCTCGATTTACAAAATTATTGTTTTACCCTTGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
61609036 TATAGAATTACCATTT
66 TATAGAATTACCATTT
* * * *
61609052 TACCCTCGATTTATAGAATTATCGTTTTATCCTCGATTTACAGAATTATCATTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
61609117 TATAGAATTACCATTT
66 TATAGAATTACCATTT
61609133 TACCCTCGATTTACAGAATTA
1 TACCCTCGATTTACAGAATTA
61609154 CTGAAATACC
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.43
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
TATAGAATTACCATTT
Found at i:61609172 original size:27 final size:27
Alignment explanation
Indices: 61609133--61609247 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
61609123 ATTACCATTT
* *
61609133 TACCCTCGATTTACAGAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
61609160 TACCCTTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
61609187 TACCCTCGATCTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* **
61609214 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
61609241 TATCCCT
1 TA-CCCT
61609248 GGTTTGTAAA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.03
27 67 0.93
28 3 0.04
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:61609173 original size:81 final size:80
Alignment explanation
Indices: 61608971--61609181 Score: 287
Period size: 81 Copynumber: 2.6 Consensus size: 80
61608961 ATTAAGAAAG
* *
61608971 TACCCTCGATTTACAAAATTATTGTTTTACCCTTGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTA-TGTTTTACCCTTGATTTACAGAATTACCATTTTACCCTCGATT
61609036 TATAGAATTACCATTT
65 TATAGAATTACCATTT
* * * * *
61609052 TACCCTCGATTTATAGAATTATCGTTTTATCCTCGATTTACAGAATTATCATTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTAT-GTTTTACCCTTGATTTACAGAATTACCATTTTACCCTCGATT
61609117 TATAGAATTACCATTT
65 TATAGAATTACCATTT
*** * *
61609133 TACCCTCGATTTACAGAATTACTGAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAGAATTA-TGTTTTACCCTTGATTTACAGAATTAC
61609182 TAAAATACCC
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 110 0.98
82 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTATGTTTTACCCTTGATTTACAGAATTACCATTTTACCCTCGATTT
ATAGAATTACCATTT
Found at i:61609191 original size:81 final size:80
Alignment explanation
Indices: 61608971--61609210 Score: 275
Period size: 81 Copynumber: 3.0 Consensus size: 80
61608961 ATTAAGAAAG
* * *
61608971 TACCCTCGATTTACAAAATTATTGTTTTACCCTTGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTA-TGTTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATT
61609036 TATAGAATTACCATTT
65 TATAGAATTACCATTT
* * * *
61609052 TACCCTCGATTTATAGAATTATCGTTTTATCCTCGATTTACAGAATTA-TCATTTTACCCTTGAT
1 TACCCTCGATTTACAGAATTAT-GTTTTACCCTTGATTTACAGAATTACT-ATTTTACCCTCGAT
61609116 TTATAGAATTACCATTT
64 TTATAGAATTACCATTT
*** * * *** *
61609133 TACCCTCGATTTACAGAATTACTGAAATACCCTTGGTTTACAAAATTACTAAAATACCCTCGATC
1 TACCCTCGATTTACAGAATTA-TGTTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATT
* *
61609198 TGTAAAATTACCA
65 TATAGAATTACCA
61609211 AAATACCCCT
Statistics
Matches: 133, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.01
81 130 0.98
82 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTATGTTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATTT
ATAGAATTACCATTT
Found at i:61609234 original size:81 final size:79
Alignment explanation
Indices: 61609149--61609325 Score: 196
Period size: 81 Copynumber: 2.2 Consensus size: 79
61609139 CGATTTACAG
* *
61609149 AATTACTGAAATACCCTTGGTTTACAAAATTACTAAAATACC-CTCGATCTGTAAAATTACCAAA
1 AATTACTGAAATACCC-TGGTTTACAAAATTACCAAAACACCTCTCGAT-TGTAAAA-TACCAAA
**
61609213 ATACCCCTAGT-TTGTAA
63 ATACCCCT-GTAGGGTAA
* ** * * *
61609230 AATTACTAAAATATCCCTGGTTTGTAAAATTACCAAAACACCTCTGGCTTGTAAAATATCAAAAT
1 AATTACTGAAATA-CCCTGGTTTACAAAATTACCAAAACACCTCTCGATTGTAAAATACCAAAAT
*
61609295 ACCCCTGTAGGGTAG
65 ACCCCTGTAGGGTAA
61609310 AATTACTGAAATACCC
1 AATTACTGAAATACCC
61609326 CTGTAAGGTA
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
79 5 0.06
80 29 0.36
81 40 0.49
82 7 0.09
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (79 bp):
AATTACTGAAATACCCTGGTTTACAAAATTACCAAAACACCTCTCGATTGTAAAATACCAAAATA
CCCCTGTAGGGTAA
Found at i:61609252 original size:27 final size:26
Alignment explanation
Indices: 61609149--61609298 Score: 142
Period size: 27 Copynumber: 5.6 Consensus size: 26
61609139 CGATTTACAG
* **
61609149 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTAAAATACCC-TGGTTTGTAA
* *
61609176 AATTACTAAAATACCCTCGATCTGTAA
1 AATTACTAAAATACCCT-GGTTTGTAA
* *
61609203 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATA-CCCTGGTTTGTAA
61609230 AATTACTAAAATATCCCTGGTTTGTAA
1 AATTACTAAAATA-CCCTGGTTTGTAA
* * *
61609257 AATTACCAAAACACCTCTGGCTTGTAA
1 AATTACTAAAATACC-CTGGTTTGTAA
61609284 AA-TA-TCAAAATACCC
1 AATTACT-AAAATACCC
61609299 CTGTAGGGTA
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.01
26 12 0.12
27 85 0.83
28 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
AATTACTAAAATACCCTGGTTTGTAA
Found at i:61609282 original size:54 final size:54
Alignment explanation
Indices: 61609174--61609298 Score: 157
Period size: 54 Copynumber: 2.3 Consensus size: 54
61609164 CTTGGTTTAC
* *
61609174 AAAATTACTAAAATACCCTCGATCTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCTCGATCTGTAAAATTACCAAAACACCCCTAGCTTGT
* * * *
61609228 AAAATTACTAAAATATCCCT-GGTTTGTAAAATTACCAAAACACCTCTGGCTTGT
1 AAAATTACTAAAATA-CCCTCGATCTGTAAAATTACCAAAACACCCCTAGCTTGT
61609282 AAAA-TA-TCAAAATACCC
1 AAAATTACT-AAAATACCC
61609299 CTGTAGGGTA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
52 4 0.06
53 8 0.13
54 47 0.75
55 4 0.06
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCGATCTGTAAAATTACCAAAACACCCCTAGCTTGT
Found at i:61609329 original size:27 final size:27
Alignment explanation
Indices: 61609291--61609424 Score: 196
Period size: 27 Copynumber: 5.0 Consensus size: 27
61609281 TAAAATATCA
*
61609291 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
61609318 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
61609345 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
61609372 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
61609399 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
61609425 ATTTTGCCCC
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:61609704 original size:24 final size:25
Alignment explanation
Indices: 61609627--61609697 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 25
61609617 AGGAAGTGCT
* *
61609627 AAAAA-GGCTATGACCCCAGTTTACC
1 AAAAAGGGCTTTG-CCCCAGTTTATC
*
61609652 AAAAAGGGCTTTGCCCTAGTTTATC
1 AAAAAGGGCTTTGCCCCAGTTTATC
61609677 AAAAAGGGCTTTGCCCCAGTT
1 AAAAAGGGCTTTGCCCCAGTT
61609698 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 35 0.85
26 6 0.15
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTATC
Found at i:61609710 original size:24 final size:24
Alignment explanation
Indices: 61609627--61609724 Score: 67
Period size: 25 Copynumber: 4.0 Consensus size: 24
61609617 AGGAAGTGCT
* *
61609627 AAAA-AGGCTATGACCCCAGTTTACC
1 AAAAGAGGCTTTG-CCCCAG-TTATC
*
61609652 AAAA-AGGGCTTTGCCCTAGTTTATC
1 AAAAGA-GGCTTTGCCCCAG-TTATC
*
61609677 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
61609701 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
61609725 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
24 15 0.24
25 42 0.67
26 6 0.10
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:61612131 original size:27 final size:27
Alignment explanation
Indices: 61612085--61612322 Score: 314
Period size: 27 Copynumber: 8.8 Consensus size: 27
61612075 ATTACTAAAA
* * * ***
61612085 TACCCTCAATTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
* * *
61612112 TACCTTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
61612139 TACCCTCGATTTATAGAACTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
61612166 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
61612193 TACCCTTGATTTATAGAATTAACGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
61612220 TATCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
61612247 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
61612274 TACCCTCGATTTACAGAATTACCAATT
1 TACCCTCGATTTATAGAATTACCATTT
*
61612301 TACCCTTGATTTATAGAATTAC
1 TACCCTCGATTTATAGAATTAC
61612323 TGAAATACCC
Statistics
Matches: 185, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 185 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:61612331 original size:27 final size:26
Alignment explanation
Indices: 61612074--61612365 Score: 181
Period size: 27 Copynumber: 10.8 Consensus size: 26
61612064 TAGTTTACCA
* * * *
61612074 AATTACTAAAATACCCTCAATTTGTAA
1 AATTAC-AAATTACCCTCGATTTATAG
* * *
61612101 AATTACCAAAGTACCTTCGATTTACAG
1 AATTA-CAAATTACCCTCGATTTATAG
**
61612128 AATTACTATTTTACCCTCGATTTATAG
1 AATTAC-AAATTACCCTCGATTTATAG
* **
61612155 AACTACCATTTTACCCTCGATTTATAG
1 AATTA-CAAATTACCCTCGATTTATAG
** *
61612182 AATTACCATTTTACCCTTGATTTATAG
1 AATTA-CAAATTACCCTCGATTTATAG
*** *
61612209 AATTAACGTTTTATCCTCGATTTATAG
1 AATT-ACAAATTACCCTCGATTTATAG
***
61612236 AATTACCGTTTTACCCTCGATTTATAG
1 AATTA-CAAATTACCCTCGATTTATAG
** *
61612263 AATTACCATTTTACCCTCGATTTACAG
1 AATTA-CAAATTACCCTCGATTTATAG
* *
61612290 AATTACCAATTTACCCTTGATTTATAG
1 AATTA-CAAATTACCCTCGATTTATAG
* * * *
61612317 AATTACTGAAA-TACCCTTGGTTTACAA
1 AATTAC--AAATTACCCTCGATTTATAG
*
61612344 AATTACCAAAATACCCTCGATT
1 AATTA-CAAATTACCCTCGATT
61612366 AGTAAAATTA
Statistics
Matches: 227, Mismatches: 29, Indels: 18
0.83 0.11 0.07
Matches are distributed among these distances:
26 6 0.03
27 215 0.95
28 6 0.03
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (26 bp):
AATTACAAATTACCCTCGATTTATAG
Found at i:61612332 original size:81 final size:81
Alignment explanation
Indices: 61612074--61612365 Score: 289
Period size: 81 Copynumber: 3.6 Consensus size: 81
61612064 TAGTTTACCA
* * * * * *
61612074 AATTACTAAAATACCCTCAATTTGTAAAATTACCAAAGTACCTTCGATTTACAGAATTACTATTT
1 AATTACTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCATTT
61612139 TACCCTCGATTTATAG
66 TACCCTCGATTTATAG
* * ** * ** * * * *
61612155 AACTAC-CATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTATAGAATTAACGTT
1 AATTACTGA-AATACCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCATT
*
61612219 TTATCCTCGATTTATAG
65 TTACCCTCGATTTATAG
* *** * ** *
61612236 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCAATT
1 AATTACTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCATTT
*
61612301 TACCCTTGATTTATAG
66 TACCCTCGATTTATAG
* * * *
61612317 AATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATT
1 AATTACTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTCGATT
61612366 AGTAAAATTA
Statistics
Matches: 171, Mismatches: 38, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
80 1 0.01
81 170 0.99
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (81 bp):
AATTACTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCATTT
TACCCTCGATTTATAG
Found at i:61612348 original size:54 final size:53
Alignment explanation
Indices: 61612067--61612365 Score: 220
Period size: 54 Copynumber: 5.5 Consensus size: 53
61612057 AATGCTTTAG
* * ** * * * * *
61612067 TTTACCAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAGTACCTTCGA
1 TTTACAAAATTACCAATTTACCCTCGATTTATAGAATTACGAAA-TACCCTCGA
* * * * * **
61612121 TTTACAGAATTACTATTTTACCCTCGATTTATAGAACTACCATTTTACCCTCGA
1 TTTACAAAATTACCAATTTACCCTCGATTTATAGAATTACGA-AATACCCTCGA
* * * * *** *
61612175 TTTATAGAATTACCATTTTACCCTTGATTTATAGAATTAACGTTTTATCCTCGA
1 TTTACAAAATTACCAATTTACCCTCGATTTATAGAATT-ACGAAATACCCTCGA
* * ** * **
61612229 TTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAATTTACCCTCGATTTATAGAATTACGA-AATACCCTCGA
* * * *
61612283 TTTACAGAATTACCAATTTACCCTTGATTTATAGAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAATTTACCCTCGATTTATAGAATTAC-GAAATACCCTCGA
**
61612337 TTTACAAAATTACCAAAATACCCTCGATT
1 TTTACAAAATTACCAATTTACCCTCGATT
61612366 AGTAAAATTA
Statistics
Matches: 204, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.01
54 199 0.98
55 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (53 bp):
TTTACAAAATTACCAATTTACCCTCGATTTATAGAATTACGAAATACCCTCGA
Found at i:61612375 original size:54 final size:54
Alignment explanation
Indices: 61612283--61612467 Score: 185
Period size: 54 Copynumber: 3.4 Consensus size: 54
61612273 TTACCCTCGA
* ** * * ** *
61612283 TTTACAGAATTACCAATTTACCCTTGATTTA-TAGAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTAGA-TTAGTAAAATTACCAAAATACCCCTGG
*
61612337 TTTACAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTAGATTAGTAAAATTACCAAAATACCCCTGG
** * * *
61612391 TTTGTAAAATTACTAAAATACCGCTAG-TTTGTAAAACTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACC-CTAGATTAGTAAAATTACCAAAATACCCCTGG
* **
61612445 CTTGTAAAATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
61612468 CTAATTTATG
Statistics
Matches: 113, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
53 4 0.04
54 106 0.94
55 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTAGATTAGTAAAATTACCAAAATACCCCTGG
Found at i:61612375 original size:81 final size:80
Alignment explanation
Indices: 61612274--61612482 Score: 224
Period size: 81 Copynumber: 2.6 Consensus size: 80
61612264 ATTACCATTT
** * * * *
61612274 TACCCTCGATT-TACAGAATTACCAATTTACCCTTGATTTATAGAATTACTGAAATACC-CTTGG
1 TACCCTCGATTGTA-A-AATTACCAAAATACCCCTGATTTATAAAATTACTAAAATACCGC-TAG
*
61612337 TTTACAAAATTACCAAAA
63 TTTACAAAACTACCAAAA
* *
61612355 TACCCTCGATTAGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCGCTAGTT
1 TACCCTCGATT-GTAAAATTACCAAAATACCCCTGATTTATAAAATTACTAAAATACCGCTAGTT
**
61612420 TGTAAAACTACCAAAA
65 TACAAAACTACCAAAA
* * * *
61612436 TACCCCTGGCTTGTAAAATTACCAAAATACCCCTAATTTATGAAATT
1 TA-CCCTCGATTGTAAAATTACCAAAATACCCCTGATTTATAAAATT
61612483 TTCGAAATAC
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
81 96 0.90
82 9 0.08
83 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (80 bp):
TACCCTCGATTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACTAAAATACCGCTAGTTT
ACAAAACTACCAAAA
Found at i:61612482 original size:27 final size:27
Alignment explanation
Indices: 61612325--61612469 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
61612315 AGAATTACTG
* **
61612325 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCCTGGTTTGTAAAATTACCA
* *
61612352 AAATA-CCCTCGATTAGTAAAATTACCA
1 AAATACCCCT-GGTTTGTAAAATTACCA
*
61612379 AAATACCCCTGGTTTGTAAAATTACTA
1 AAATACCCCTGGTTTGTAAAATTACCA
* * *
61612406 AAATACCGCTAGTTTGTAAAACTACCA
1 AAATACCCCTGGTTTGTAAAATTACCA
*
61612433 AAATACCCCTGGCTTGTAAAATTACCA
1 AAATACCCCTGGTTTGTAAAATTACCA
61612460 AAATACCCCT
1 AAATACCCCT
61612470 AATTTATGAA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 3 0.03
27 93 0.93
28 4 0.04
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATACCCCTGGTTTGTAAAATTACCA
Found at i:61612491 original size:81 final size:80
Alignment explanation
Indices: 61612342--61612548 Score: 190
Period size: 81 Copynumber: 2.6 Consensus size: 80
61612332 CTTGGTTTAC
* ** *
61612342 AAAATTACCAAAATA-CCCTCGATTAGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTA
1 AAAA-TACCAAAATACCCCTGGATTAGTAAAATTACCAAAATACCCCTAATTTATAAAATTACTA
61612406 AAATACCGCT-AGTTTGT
65 AAATA-CGCTCA-TTTGT
* * *
61612423 AAAACTACCAAAATACCCCTGGCTT-GTAAAATTACCAAAATACCCCTAATTTATGAAATT-TTC
1 AAAA-TACCAAAATACCCCTGGATTAGTAAAATTACCAAAATACCCCTAATTTATAAAATTACT-
* *
61612486 GAAATACTCTCATTTGT
64 AAAATACGCTCATTTGT
* * * ** * *
61612503 AAAATATCGAAATACCCCTGTA-GGGTAGAATTATCAAAATACCCCT
1 AAAATACCAAAATACCCCTGGATTAGTAAAATTACCAAAATACCCCT
61612549 GTAGGTAGAA
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
79 34 0.32
80 13 0.12
81 51 0.49
82 7 0.07
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
AAAATACCAAAATACCCCTGGATTAGTAAAATTACCAAAATACCCCTAATTTATAAAATTACTAA
AATACGCTCATTTGT
Found at i:61612545 original size:27 final size:27
Alignment explanation
Indices: 61612510--61612671 Score: 200
Period size: 27 Copynumber: 6.0 Consensus size: 27
61612500 TGTAAAATAT
*
61612510 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
61612537 CAAAATACCCCTGTA-GGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
61612563 TAAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * **
61612590 CGAAATACCCTTGTAGGGTAAAAACAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
61612617 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
61612644 CGAGATACCCTTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
61612671 C
1 C
61612672 ATTTTGCCCC
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 23 0.20
27 91 0.80
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:61612574 original size:53 final size:54
Alignment explanation
Indices: 61612512--61612672 Score: 225
Period size: 54 Copynumber: 3.0 Consensus size: 54
61612502 TAAAATATCG
* * * * * *
61612512 AAATACCCCTGTAGGGTAGAATTATCAAAATACCCCTGTA-GGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAATTACCA
** *
61612565 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAACACCG
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAATTACCA
*
61612619 AAATACCCCTATAGGGTAGAATTACCGAGATACCCTTGTAGGGTAAAATTACCA
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAATTACCA
61612673 TTTTGCCCCT
Statistics
Matches: 94, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 36 0.38
54 58 0.62
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (54 bp):
AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAATTACCA
Found at i:61612911 original size:25 final size:25
Alignment explanation
Indices: 61612873--61612942 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
61612863 AGGAAGTGCT
* *
61612873 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* * *
61612898 TAAAGGGCTTTGCCCAAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
61612923 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
61612943 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:61612955 original size:24 final size:25
Alignment explanation
Indices: 61612873--61612955 Score: 66
Period size: 25 Copynumber: 3.4 Consensus size: 25
61612863 AGGAAGTGCT
* * *
61612873 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCAAGTTTATC
*
61612897 GTAAAG-GGCTTTGCCCAAGTTTATC
1 -AAAAGAGGCTTTGCCCAAGTTTATC
* *
61612922 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCAAGTTTATC
61612946 AAAAGAGGCT
1 AAAAGAGGCT
61612956 AGGCCTCTAG
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
24 15 0.31
25 33 0.69
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCAAGTTTATC
Found at i:61615375 original size:27 final size:27
Alignment explanation
Indices: 61615341--61615551 Score: 316
Period size: 27 Copynumber: 7.8 Consensus size: 27
61615331 ATTACCAAAG
*
61615341 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
61615368 TACTCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
61615395 TATCCTCGATTTATAGAA-TACCTATTT
1 TACCCTCGATTTACAGAATTACC-ATTT
* *
61615422 TATCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
61615449 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
61615476 TACCCTCGATTTACAGAATTACTACTT
1 TACCCTCGATTTACAGAATTACCATTT
61615503 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
61615530 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
61615552 TAAAATACCC
Statistics
Matches: 170, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
26 4 0.02
27 162 0.95
28 4 0.02
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:61615560 original size:27 final size:27
Alignment explanation
Indices: 61615328--61615593 Score: 246
Period size: 27 Copynumber: 9.9 Consensus size: 27
61615318 CTCAATTTGT
** *
61615328 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAATTTACCCTCGATTTAC
* * * *
61615355 AGAATTACCATTTTACTCTCGATTTAT
1 AAAATTACCAATTTACCCTCGATTTAC
* * * *
61615382 AGAATTACCATTTTATCCTCGATTTAT
1 AAAATTACCAATTTACCCTCGATTTAC
* * *
61615409 AGAA-TACCTATTTTATCCTCGATTTAC
1 AAAATTACC-AATTTACCCTCGATTTAC
*
61615436 AAAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAATTTACCCTCGATTTAC
* *
61615463 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAATTTACCCTCGATTTAC
* * *
61615490 AGAATTACTACTTTACCCTCGATTTAC
1 AAAATTACCAATTTACCCTCGATTTAC
* *
61615517 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAATTTACCCTCGATTTAC
* ** * * *
61615544 AAAATTACTAAAATACCCTTGGTTTAG
1 AAAATTACCAATTTACCCTCGATTTAC
**
61615571 AAAATTACCAAAATACCCTCGAT
1 AAAATTACCAATTTACCCTCGAT
61615594 CAGTAAAATT
Statistics
Matches: 211, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
26 4 0.02
27 203 0.96
28 4 0.02
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (27 bp):
AAAATTACCAATTTACCCTCGATTTAC
Found at i:61615561 original size:54 final size:54
Alignment explanation
Indices: 61615328--61615615 Score: 292
Period size: 54 Copynumber: 5.3 Consensus size: 54
61615318 CTCAATTTGT
* * * *
61615328 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACTCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
* ** * * *
61615382 AGAATTACCATTTTATCCTCGATTTATAGAA-TACCTATTTTATCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACC-ATTTTACCCTCGATTTAC
**
61615436 AAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
* * **
61615490 AGAATTACTACTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
* * * * * * *** * *
61615544 AAAATTACTAAAATACCCTTGGTTTAGAAAATTACCAAAATACCCTCGA-TCAGT
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA-C
*
61615598 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
61615616 CTGATTTGTG
Statistics
Matches: 202, Mismatches: 29, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 6 0.03
54 192 0.95
55 4 0.02
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
Found at i:61615588 original size:81 final size:81
Alignment explanation
Indices: 61615328--61615593 Score: 300
Period size: 81 Copynumber: 3.3 Consensus size: 81
61615318 CTCAATTTGT
* * * *
61615328 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACTCTCGATTTATAGAATTACCAT
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAT
* *
61615393 TTTATCCTCGATTTAT
66 TTTACCCTCGATTTAC
* ** * *
61615409 AGAA-TACCTATTTTATCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCA
1 AAAATTACC-AAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCA
61615473 TTTTACCCTCGATTTAC
65 TTTTACCCTCGATTTAC
* * ** * * *
61615490 AGAATTACTACTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAA
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAT
** * * *
61615555 AATACCCTTGGTTTAG
66 TTTACCCTCGATTTAC
*
61615571 AAAATTACCAAAATACCCTCGAT
1 AAAATTACCAAATTACCCTCGAT
61615594 CAGTAAAATT
Statistics
Matches: 155, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
80 4 0.03
81 148 0.95
82 3 0.02
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAT
TTTACCCTCGATTTAC
Found at i:61615601 original size:27 final size:27
Alignment explanation
Indices: 61615530--61615669 Score: 117
Period size: 27 Copynumber: 5.2 Consensus size: 27
61615520 ATTACCATTT
* *
61615530 TACCCTCGATTTA-CAAAATTACTAAAA
1 TACCCTCGA-TTAGTAAAATTACCAAAA
* *
61615557 TACCCTTGGTTTAG-AAAATTACCAAAA
1 TACCC-TCGATTAGTAAAATTACCAAAA
*
61615584 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTAGTAAAATTACCAAAA
* * * *
61615611 TACCC-CTGATTTGTGAAATTATCGAAA
1 TACCCTC-GATTAGTAAAATTACCAAAA
* * *
61615638 TACTCTCGATTTGTAAAA-TATCAAAA
1 TACCCTCGATTAGTAAAATTACCAAAA
61615664 TACCCT
1 TACCCT
61615670 TGTAGGGTAG
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
26 18 0.19
27 72 0.77
28 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTAGTAAAATTACCAAAA
Found at i:61615604 original size:81 final size:79
Alignment explanation
Indices: 61615296--61615607 Score: 203
Period size: 81 Copynumber: 3.8 Consensus size: 79
61615286 AATACTTTAG
* ** * * ** * *
61615296 TTTACCAAATTACTGAAATGCCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATGTA-A-AATT
*
61615361 ACCATTTTACTCTCGA
64 ACCATTTTACCCTCGA
* * *** * * * *** * *
61615377 TTTATAGAATTACCATTTTATCCTCGATTTATAGAA-TACCTATTTTATCCTCGATTTACAAAAT
1 TTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACC-AAAATACCCTCGATGT--AAAAT
61615441 TACCATTTTACCCTCGA
63 TACCATTTTACCCTCGA
* *** * * *** *
61615458 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTACTTTACCCTCGATTTACAGAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATGTA-A-AATT
61615523 ACCATTTTACCCTCGA
64 ACCATTTTACCCTCGA
* * * *
61615539 TTTACAAAATTACTAAAATACCCTTGGTTTAGAAAATTACCAAAATACCCTCGATCAGTAAAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGAT--GTAAAATT
61615604 ACCA
64 ACCA
61615608 AAATACCCCT
Statistics
Matches: 185, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
79 1 0.01
80 5 0.03
81 171 0.92
82 5 0.03
83 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.36
Consensus pattern (79 bp):
TTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATGTAAAATTAC
CATTTTACCCTCGA
Found at i:61615630 original size:54 final size:54
Alignment explanation
Indices: 61615544--61615668 Score: 137
Period size: 54 Copynumber: 2.3 Consensus size: 54
61615534 CTCGATTTAC
* * *
61615544 AAAATTACTAAAATACCCTTGGTTTAGAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGATTTAGAAAATTACCAAAATACCCTCGATCAGT
* * * * **
61615598 AAAATTACCAAAATACCCCTGATTT-GTGAAATTATCGAAATACTCTCGATTTGT
1 AAAATTACCAAAATACCCCTGATTTAG-AAAATTACCAAAATACCCTCGATCAGT
*
61615652 AAAA-TATCAAAATACCC
1 AAAATTACCAAAATACCC
61615669 TTGTAGGGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
53 13 0.22
54 47 0.78
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTAGAAAATTACCAAAATACCCTCGATCAGT
Found at i:61615700 original size:27 final size:27
Alignment explanation
Indices: 61615661--61615821 Score: 196
Period size: 27 Copynumber: 6.0 Consensus size: 27
61615651 TAAAATATCA
*
61615661 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
61615688 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
61615715 AAATACCTCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* * **
61615742 AAATACCCTTGTAGGGTAGAAATGTCG
1 AAATACCCCTGTAGGGTAGAATTACCG
61615769 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * * *
61615796 AGATACTCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
61615822 ATTTTGCCCC
Statistics
Matches: 114, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:61615813 original size:81 final size:81
Alignment explanation
Indices: 61615650--61615822 Score: 242
Period size: 81 Copynumber: 2.1 Consensus size: 81
61615640 CTCTCGATTT
* * *
61615650 GTAAAA-TATCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
1 GTAAAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
61615714 AAAATACCTCTGTAGG
66 AAAATACCTCTGTAGG
* **
61615730 GTAGAATTACCAAAATACCCTTGTAGGGTAGAAATGTCGAAATACCCCTGTAGGGTAGAATTACC
1 GTAAAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
* * *
61615795 GAGATA-CTCTTGTGGG
66 AAAATACCTC-TGTAGG
61615811 GTAAAATTACCA
1 GTAAAATTACCA
61615823 TTTTGCCCCT
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 8 0.10
81 73 0.90
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
AAAATACCTCTGTAGG
Found at i:61616052 original size:25 final size:25
Alignment explanation
Indices: 61616024--61616118 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
61616014 ATGAAGTGCT
*
61616024 AAAAGGGCTATGCCCCAGTTTATCG
1 AAAAGGGCTATGCCCCAGTTTATCA
*
61616049 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCA
* *
61616074 AAAAGGGCTTTGCCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTTATCA
*
61616097 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
61616119 ATATGATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 45 0.73
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATCA
Found at i:61621572 original size:45 final size:45
Alignment explanation
Indices: 61621510--61621605 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
61621500 TAGGATTCCG
* * *
61621510 ATATGTGTTTTCATGTAAGACCACGTCTGGGATGTTGGCATCGAT
1 ATATGTATTTTCATGTAAGACCACGTATGGGACGTTGGCATCGAT
* * *
61621555 ATATGTATTTTCGTGTAAGATCATGTATGGGACGTTGGCATCGAT
1 ATATGTATTTTCATGTAAGACCACGTATGGGACGTTGGCATCGAT
*
61621600 AAATGT
1 ATATGT
61621606 GGTTACGTGT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.36
Consensus pattern (45 bp):
ATATGTATTTTCATGTAAGACCACGTATGGGACGTTGGCATCGAT
Found at i:61621631 original size:45 final size:45
Alignment explanation
Indices: 61621523--61621632 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
61621513 TGTGTTTTCA
* * * * * *
61621523 TGTAAGACCACGTCTGGGATGTTGGCATCGATATATGTATTTTCG
1 TGTAAAACCATGTCTGGGACGTTGGCATCGATAAATGTAGTTACG
* * * *
61621568 TGTAAGATCATGTATGGGACGTTGGCATCGATAAATGTGGTTACG
1 TGTAAAACCATGTCTGGGACGTTGGCATCGATAAATGTAGTTACG
*
61621613 TGTAAAACCGTGTCTGGGAC
1 TGTAAAACCATGTCTGGGAC
61621633 ATCGACATCG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.32
Consensus pattern (45 bp):
TGTAAAACCATGTCTGGGACGTTGGCATCGATAAATGTAGTTACG
Found at i:61621745 original size:17 final size:17
Alignment explanation
Indices: 61621723--61621763 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
61621713 GGACATTGGC
61621723 ATTATTCGATATATGTG
1 ATTATTCGATATATGTG
61621740 ATTATTCGATATATGTG
1 ATTATTCGATATATGTG
61621757 ATTATTC
1 ATTATTC
61621764 CAGTATCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (17 bp):
ATTATTCGATATATGTG
Found at i:61632605 original size:10 final size:10
Alignment explanation
Indices: 61632592--61632630 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
61632582 ATATGTGAAT
61632592 ATATCATGGC
1 ATATCATGGC
61632602 ATATCATGTGC
1 ATATCATG-GC
61632613 ATATCATGGC
1 ATATCATGGC
61632623 ATATCATG
1 ATATCATG
61632631 TAGAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:61632618 original size:21 final size:21
Alignment explanation
Indices: 61632592--61632631 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
61632582 ATATGTGAAT
61632592 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
61632613 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
61632632 AGAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:61634423 original size:22 final size:22
Alignment explanation
Indices: 61634395--61634437 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
61634385 TGAAAAACCC
* *
61634395 GAAAATCAGGATGTTGCAACTT
1 GAAAATCAAGATGTTACAACTT
61634417 GAAAATCAAGATGTTACAACT
1 GAAAATCAAGATGTTACAACT
61634438 CTACCCTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (22 bp):
GAAAATCAAGATGTTACAACTT
Found at i:61640476 original size:10 final size:10
Alignment explanation
Indices: 61640463--61640501 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
61640453 ATATGTGAAT
61640463 ATATCATGGC
1 ATATCATGGC
61640473 ATATCATGTGC
1 ATATCATG-GC
61640484 ATATCATGGC
1 ATATCATGGC
61640494 ATATCATG
1 ATATCATG
61640502 TAGAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:61640489 original size:21 final size:21
Alignment explanation
Indices: 61640463--61640502 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
61640453 ATATGTGAAT
61640463 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
61640484 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
61640503 AGAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:61647953 original size:49 final size:47
Alignment explanation
Indices: 61647893--61648050 Score: 217
Period size: 47 Copynumber: 3.3 Consensus size: 47
61647883 GTATGAGATA
* *
61647893 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
*
61647942 TATATATGTGATAAGGGCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
61647989 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
61648036 TATAAATGTGATAAG
1 TATATATGTGATAAG
61648051 TCCCGAAGGG
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 57 0.58
49 41 0.42
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:61665594 original size:43 final size:44
Alignment explanation
Indices: 61665483--61665605 Score: 160
Period size: 45 Copynumber: 2.8 Consensus size: 44
61665473 TCATATATCG
* * *
61665483 ATGCCACTGTACCAGACATGATCTTACACGTAATCTCAATTAAC
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTAAC
* *
61665527 GATGCTAATGTCCTAGACATGGTCTTACACGTAATCTCAA-TAGA-
1 -ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTA-AC
*
61665571 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC
61665606 ACATCTCGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
43 32 0.46
44 2 0.03
45 35 0.51
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAATTAAC
Found at i:61666143 original size:29 final size:29
Alignment explanation
Indices: 61666077--61666145 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 29
61666067 CCAAACCTTT
61666077 CATTTATTTCACAATTTAACCCCTCAATTTA
1 CATTT-TTTCACAATTTAACCCCT-AATTTA
* * *
61666108 CA-CTTTTCTCAATTTAATCCCT-ATTTGA
1 CATTTTTTCACAATTTAACCCCTAATTT-A
61666136 CATTTTTTCA
1 CATTTTTTCA
61666146 AAAAATCACT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 4 0.13
28 3 0.10
29 21 0.68
30 1 0.03
31 2 0.06
ACGTcount: A:0.28, C:0.25, G:0.01, T:0.46
Consensus pattern (29 bp):
CATTTTTTCACAATTTAACCCCTAATTTA
Found at i:61672620 original size:70 final size:71
Alignment explanation
Indices: 61672534--61672696 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
61672524 CGATTTGTCT
61672534 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61672598 CTTTCA
66 CTTTCA
*
61672604 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61672669 CTTTCA
66 CTTTCA
61672675 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61672697 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61672734 original size:71 final size:70
Alignment explanation
Indices: 61672534--61672730 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
61672524 CGATTTGTCT
* * * *
61672534 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
61672598 CTTTCA
65 CTTTCA
* * * *
61672604 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
61672669 CTTTCA
65 CTTTCA
* *
61672675 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
61672731 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61680148 original size:70 final size:71
Alignment explanation
Indices: 61680065--61680227 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
61680055 CGATTTGTCT
61680065 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61680129 CTTTCA
66 CTTTCA
*
61680135 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61680200 CTTTCA
66 CTTTCA
61680206 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61680228 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61680265 original size:71 final size:70
Alignment explanation
Indices: 61680065--61680261 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
61680055 CGATTTGTCT
* * * *
61680065 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
61680129 CTTTCA
65 CTTTCA
* * * *
61680135 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
61680200 CTTTCA
65 CTTTCA
* *
61680206 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
61680262 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61685172 original size:29 final size:31
Alignment explanation
Indices: 61685140--61685197 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
61685130 TGTGCATTAT
*
61685140 ATATATATGCTGAA-TT-AAGT-TGTAAAAGA
1 ATATAAATG-TGAAGTTGAAGTATGTAAAAGA
61685169 ATATAAATGTGAAGTTGAAGTATGTAAAA
1 ATATAAATGTGAAGTTGAAGTATGTAAAA
61685198 TATGAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
30 4 0.16
31 7 0.28
ACGTcount: A:0.47, C:0.02, G:0.19, T:0.33
Consensus pattern (31 bp):
ATATAAATGTGAAGTTGAAGTATGTAAAAGA
Found at i:61688612 original size:40 final size:40
Alignment explanation
Indices: 61688564--61688769 Score: 335
Period size: 40 Copynumber: 5.2 Consensus size: 40
61688554 GGACTAAGAT
*
61688564 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
61688604 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
61688644 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
61688684 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
61688724 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
61688763 CCGAAGG
1 CCGAAGG
61688770 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.09
40 142 0.90
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:61691037 original size:40 final size:40
Alignment explanation
Indices: 61690953--61691137 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
61690943 TCGAATGATG
* *
61690953 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
61690992 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61691033 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
61691072 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61691111 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
61691138 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:61691089 original size:79 final size:81
Alignment explanation
Indices: 61690953--61691135 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
61690943 TCGAATGATG
* *
61690953 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
61691017 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
61691032 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
61691094 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
61691112 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
61691136 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:61691159 original size:79 final size:78
Alignment explanation
Indices: 61690954--61691170 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
61690944 CGAATGATGT
* *
61690954 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
61691017 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
61691034 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
61691097 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
61691113 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
61691171 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:61699081 original size:40 final size:40
Alignment explanation
Indices: 61698997--61699181 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
61698987 TCGAATGATG
* *
61698997 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
61699036 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61699077 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
61699116 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61699155 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
61699182 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:61699133 original size:79 final size:81
Alignment explanation
Indices: 61698997--61699179 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
61698987 TCGAATGATG
* *
61698997 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
61699061 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
61699076 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
61699138 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
61699156 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
61699180 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:61699203 original size:79 final size:78
Alignment explanation
Indices: 61698998--61699214 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
61698988 CGAATGATGT
* *
61698998 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
61699061 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
61699078 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
61699141 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
61699157 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
61699215 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:61705129 original size:21 final size:21
Alignment explanation
Indices: 61705088--61705129 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
61705078 AAGAAAGGAA
* **
61705088 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
61705109 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
61705130 GGTTATCACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:61706755 original size:40 final size:40
Alignment explanation
Indices: 61706700--61706804 Score: 201
Period size: 40 Copynumber: 2.6 Consensus size: 40
61706690 GGATTGATAC
61706700 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
61706740 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61706780 TCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
61706805 AGCTAGTAGC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:61706837 original size:39 final size:39
Alignment explanation
Indices: 61706703--61706827 Score: 180
Period size: 40 Copynumber: 3.2 Consensus size: 39
61706693 TTGATACCCG
*
61706703 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
61706742 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCG
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCC
* *
61706783 GGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
61706822 GGCTAA
1 GGCTAA
61706828 ACTCCGAAGG
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
39 11 0.14
40 65 0.83
41 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:61711087 original size:40 final size:39
Alignment explanation
Indices: 61711039--61711244 Score: 297
Period size: 40 Copynumber: 5.2 Consensus size: 39
61711029 GGACTAAGAT
*
61711039 CCGAAGGCATTTGTGCTAGTGATTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCG-GCTAAGTC
61711079 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGTC
61711119 CCGAAGGCATTTGTGCTAGTGACTATATCCGGACTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGG-CTAAGTC
* *
61711159 CCGAAGGCATTTGTGCTAGTGACTTTGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGTC
* * * *
61711199 CCGAAGGCATTCGTGCGAGTTG-CTATATCCGGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGCTAAGTC
61711238 CCGAAGG
1 CCGAAGG
61711245 TACTTGGGTT
Statistics
Matches: 153, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
39 16 0.10
40 132 0.86
41 5 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGTC
Found at i:61713598 original size:25 final size:25
Alignment explanation
Indices: 61713538--61713621 Score: 118
Period size: 26 Copynumber: 3.4 Consensus size: 25
61713528 AGGAAGTGCA
*
61713538 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
61713563 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
61713589 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
61713612 AAAAGAGGCT
1 AAAAG-GGCT
61713622 AGGCCTCTAG
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
23 9 0.17
24 13 0.24
25 8 0.15
26 24 0.44
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:61715272 original size:80 final size:80
Alignment explanation
Indices: 61715147--61715339 Score: 253
Period size: 80 Copynumber: 2.4 Consensus size: 80
61715137 GGATATAGCG
* * * * *
61715147 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATAGCTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGAATT
61715212 AACCCGGATTTAGTA
66 AACCCGGATTTAGTA
* * **
61715227 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGAATT
* *
61715292 GACCCGGATTTAGTC
66 AACCCGGATTTAGTA
*
61715307 ACTTAGCAC-AATAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAAT-GCCTTCGGGACTTAGCCCGG
61715340 ACATCATTCG
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 74 0.76
81 24 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGAATT
AACCCGGATTTAGTA
Found at i:61715328 original size:41 final size:40
Alignment explanation
Indices: 61715147--61715340 Score: 205
Period size: 40 Copynumber: 4.8 Consensus size: 40
61715137 GGATATAGCG
* * * *
61715147 ACTCGCTCAAAAGCCTTCGGGACA-TAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGA-ATTAACCCGGATT-TAGTA
* *
61715187 GCTCGCACAATTGCCTTCGGGAATTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTA
* * *
61715227 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTA
* *
61715267 ACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTC
1 ACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTA
* * *
61715307 ACTTAGCAC-AATAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAT-GCCTTCGGGAATTAACCCGGA
61715341 CATCATTCGA
Statistics
Matches: 130, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 104 0.80
41 25 0.19
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTA
Found at i:61718202 original size:124 final size:124
Alignment explanation
Indices: 61717980--61718204 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
61717970 GAATTATGTG
* * ** * * *
61717980 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
61718045 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
61718104 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
61718169 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
61718205 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:61718326 original size:40 final size:40
Alignment explanation
Indices: 61718199--61718328 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
61718189 ATGCTGGAAA
* *
61718199 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
61718239 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
61718279 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
61718319 TTATATCCGG
1 TTATATCCGG
61718329 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:61718327 original size:80 final size:80
Alignment explanation
Indices: 61718161--61718328 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
61718151 CAATTGAATG
* * *
61718161 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
61718226 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
61718241 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
61718305 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
61718321 ATATCCGG
1 ATATCCGG
61718329 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:61726190 original size:40 final size:39
Alignment explanation
Indices: 61726134--61726324 Score: 156
Period size: 40 Copynumber: 4.8 Consensus size: 39
61726124 GGATATAGCG
* * * *
61726134 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGTT-TAGTA
* *
61726174 GCTCGCACAATTGCCTTCGGGA-ATTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACA-TAACCCGG-TTTAGTA
* * *
61726214 ACT--CACAAATGCCTTCGGGACTTAACCCGATTTTGGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCG-GTTTAGTA
* *
61726252 ACTCGCACAAATGCCTTCGGGA-ATTGACCCGGATTTAGTC
1 ACTCGCACAAATGCCTTCGGGACA-TAACCCGG-TTTAGTA
* * * *
61726292 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACATAACCCGG
61726325 ACATCATTCG
Statistics
Matches: 120, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
38 32 0.27
39 1 0.01
40 61 0.51
41 26 0.22
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGTTTAGTA
Found at i:61726230 original size:38 final size:39
Alignment explanation
Indices: 61726178--61726325 Score: 174
Period size: 38 Copynumber: 3.7 Consensus size: 39
61726168 ATAATAGCTC
*
61726178 GCACAATTGCCTTCGGGAATTAACCCGGATTTAGTAACT
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACT
* *
61726217 -CACAAATGCCTTCGGGACTTAACCC-GATTTTGGTAACT
1 GCACAAATGCCTTCGGGAATTAACCCGGA-TTTAGTAACT
* *
61726255 CGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTT
1 -GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC-T
* * *
61726296 AGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -GCACAAATGCCTTCGGGAATTAACCCGGA
61726326 CATCATTCGA
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
37 2 0.02
38 32 0.35
40 30 0.33
41 28 0.30
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACT
Found at i:61726257 original size:78 final size:80
Alignment explanation
Indices: 61726141--61726323 Score: 235
Period size: 78 Copynumber: 2.3 Consensus size: 80
61726131 GCGACTCGCT
* * * * ** * *
61726141 CAAAAGCCTTCGGGACATAGCCCGGTTATAATAGCTCGCACAATTGCCTTCGGGAATTAACCCGG
1 CAAAAGCCTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGCCTTCGGGAATTAACCCGG
61726206 ATTTAGTAAC-T-CA
66 ATTTAGTAACTTACA
* *
61726219 CAAATGCCTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGG
1 CAAAAGCCTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGCCTTCGGGAATTAACCCGG
*
61726284 ATTTAGTCACTTAGCA
66 ATTTAGTAACTTA-CA
*
61726300 CAAAAGCCTTCGGGACTTAGCCCG
1 CAAAAGCCTTCGGGACTTAACCCG
61726324 GACATCATTC
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
78 64 0.72
79 1 0.01
81 24 0.27
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAAAGCCTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGCCTTCGGGAATTAACCCGG
ATTTAGTAACTTACA
Found at i:61728151 original size:31 final size:31
Alignment explanation
Indices: 61728097--61728182 Score: 84
Period size: 38 Copynumber: 2.6 Consensus size: 31
61728087 ACAGTGAAGC
*
61728097 CTTCGGCCCAGTAATATGGAATATGAAAAGG
1 CTTCGGCCCAGTAATATGAAATATGAAAAGG
61728128 CTTCGGCCCAGTGTCATGAAATATGAAATATGAAAAGG
1 CTTCGGCCCA--G---T--AATATGAAATATGAAAAGG
*
61728166 CTTCGGCTCAGT-ATATG
1 CTTCGGCCCAGTAATATG
61728183 CTGAGATTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
30 5 0.11
31 10 0.22
33 2 0.04
36 2 0.04
38 27 0.59
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (31 bp):
CTTCGGCCCAGTAATATGAAATATGAAAAGG
Found at i:61735844 original size:24 final size:24
Alignment explanation
Indices: 61735778--61735860 Score: 114
Period size: 25 Copynumber: 3.4 Consensus size: 24
61735768 AGGAAGTGCA
*
61735778 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
61735802 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGTTTATC
*
61735828 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
61735851 AAAAGAGGCT
1 AAAAG-GGCT
61735861 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
23 9 0.17
24 14 0.26
25 16 0.30
26 15 0.28
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:61736104 original size:31 final size:31
Alignment explanation
Indices: 61736069--61736131 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
61736059 GTTTACAGTG
*
61736069 AAGGCTTCGGCCCAGTAATATGGAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
* **
61736100 AAGGCTTTGGCCCAGTGTTATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
61736131 A
1 A
61736132 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:61739119 original size:12 final size:12
Alignment explanation
Indices: 61739102--61739126 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
61739092 AAATTAAAAT
61739102 TATTCAATCAAA
1 TATTCAATCAAA
61739114 TATTCAATCAAA
1 TATTCAATCAAA
61739126 T
1 T
61739127 TCATCCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (12 bp):
TATTCAATCAAA
Found at i:61741235 original size:22 final size:23
Alignment explanation
Indices: 61741207--61741249 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
61741197 ATGCAATATC
*
61741207 ATAACCA-ACCAAATTCATGCTT
1 ATAACCATACCAAAATCATGCTT
*
61741229 ATAACCATATCAAAATCATGC
1 ATAACCATACCAAAATCATGC
61741250 CAAATCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.44, C:0.26, G:0.05, T:0.26
Consensus pattern (23 bp):
ATAACCATACCAAAATCATGCTT
Found at i:61741264 original size:23 final size:23
Alignment explanation
Indices: 61741238--61741299 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
61741228 TATAACCATA
*
61741238 TCAAAATCATGCCAAATCATAAT
1 TCAAAGTCATGCCAAATCATAAT
61741261 TCAAAGTCATGCCAAATCATAAT
1 TCAAAGTCATGCCAAATCATAAT
*
61741284 TCAAAGTCATACCAAA
1 TCAAAGTCATGCCAAA
61741300 ACTTAAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.47, C:0.23, G:0.06, T:0.24
Consensus pattern (23 bp):
TCAAAGTCATGCCAAATCATAAT
Found at i:61742161 original size:43 final size:43
Alignment explanation
Indices: 61742060--61742142 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
61742050 CCCAGTCGTA
* *
61742060 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAGT
1 GTCTTACAAGAAATCAAATATCGATGCCACTGTCCCAAACAGT
61742103 GTCTTACAAGAAATCAAATA-CGATGCCGA-TGTCCCAAACA
1 GTCTTACAAGAAATCAAATATCGATGCC-ACTGTCCCAAACA
61742143 TGGTTGTACA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 18 0.49
43 19 0.51
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (43 bp):
GTCTTACAAGAAATCAAATATCGATGCCACTGTCCCAAACAGT
Found at i:61744577 original size:19 final size:19
Alignment explanation
Indices: 61744541--61744579 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
61744531 TTTTTATCAT
* *
61744541 AGTAAAATAAAATAATAAA
1 AGTAAAAGAAAACAATAAA
*
61744560 AGTAAAAGAAAACCATAAA
1 AGTAAAAGAAAACAATAAA
61744579 A
1 A
61744580 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.05, G:0.08, T:0.15
Consensus pattern (19 bp):
AGTAAAAGAAAACAATAAA
Found at i:61745085 original size:55 final size:56
Alignment explanation
Indices: 61745020--61745134 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
61745010 AGCATGGCTG
* * *
61745020 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAAATAATTTGTGGCA-TAGCCA
* * *
61745076 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAAATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAAATAATTTGTGGCATAGCCA
61745131 CCAG
1 CCAG
61745135 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 22 0.43
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAAATAATTTGTGGCATAGCCA
Found at i:61745097 original size:27 final size:27
Alignment explanation
Indices: 61745045--61745134 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
61745035 GTGACAGAGT
61745045 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
61745074 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
61745101 CACCAGAACAAATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
61745129 CACCAG
1 CACCAG
61745135 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:61745130 original size:28 final size:27
Alignment explanation
Indices: 61745045--61745134 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
61745035 GTGACAGAGT
*
61745045 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
61745074 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
61745101 CACCAGAACAAATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
61745129 CACCAG
1 CACCAG
61745135 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:61751264 original size:40 final size:40
Alignment explanation
Indices: 61751209--61751450 Score: 263
Period size: 40 Copynumber: 6.0 Consensus size: 40
61751199 TGAATGATAC
* * *
61751209 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
61751249 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GATTATAT
* ** *
61751289 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
61751329 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* ** *
61751369 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * * ** *
61751409 TCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
61751449 CC
1 CC
61751451 AGCTAAATTC
Statistics
Matches: 165, Mismatches: 33, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 162 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:61751422 original size:120 final size:120
Alignment explanation
Indices: 61751209--61751436 Score: 314
Period size: 120 Copynumber: 1.9 Consensus size: 120
61751199 TGAATGATAC
* * *
61751209 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** * *
61751274 TGCGAGTCGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
66 TGCAAGTCACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
* *
61751329 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTC
* * *
61751393 GTGCAAGTTACCAAATTCGGGTTAAGACCCGAAGGCAATTGTGC
65 GTGCAAGTCACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGC
61751437 TTGTGGTTAT
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 91 0.98
121 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTCACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
Found at i:61751450 original size:80 final size:80
Alignment explanation
Indices: 61751209--61751429 Score: 352
Period size: 80 Copynumber: 2.8 Consensus size: 80
61751199 TGAATGATAC
* * * * ** *
61751209 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
61751274 TGCGAGTCGTTATAT
66 TGCGAGTCGTTATAT
61751289 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
61751354 TGCGAGTTGTTATAT
66 TGCGAGTCGTTATAT
* *
61751369 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATTCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCA
61751430 ATTGTGCTTG
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 131 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCGTTATAT
Found at i:61765380 original size:41 final size:41
Alignment explanation
Indices: 61765335--61765452 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
61765325 TGAAAGATAA
61765335 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
61765376 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61765406 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
61765447 ATGTAG
1 ATGTAG
61765453 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:61765384 original size:71 final size:71
Alignment explanation
Indices: 61765303--61765466 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61765293 GAGATGTATC
61765303 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61765368 AGGACA
66 AGGACA
61765374 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
61765439 AGGACA
66 AGGACA
61765445 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
61765467 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:61768807 original size:46 final size:46
Alignment explanation
Indices: 61768656--61768871 Score: 179
Period size: 46 Copynumber: 4.6 Consensus size: 46
61768646 TCACTTGCAT
* * * * * *
61768656 GAGCTAGTGTAAGAGATGTATGGAACATGCATCGGCCA-C-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGA-GACGA
* * * *
61768702 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGTATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGA
* * *
61768750 GAGCTATTGTAAGACATGTCTGCGACATGCATCGGCATCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACG-A
* *
61768797 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGTTAT-GAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGAGACGA
* * *
61768842 TAGTCAGTGTAAGACCATGTTTGGGACATG
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG
61768872 GCATTGACAC
Statistics
Matches: 140, Mismatches: 22, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 75 0.54
47 40 0.29
48 23 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGA
Found at i:61772000 original size:27 final size:27
Alignment explanation
Indices: 61771967--61772408 Score: 517
Period size: 27 Copynumber: 16.6 Consensus size: 27
61771957 AAAGTACTCC
*
61771967 CGATTTACAGAATTACCGTTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
**
61771994 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
61772021 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
61772048 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * * *
61772075 TGATTTATAGAATTACTGTTTTACACT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
61772102 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
61772129 CGATTTGTAAAATTACCG---T---CT
1 CGATTTACAGAATTACCGTTTTACCCT
61772150 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
61772177 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
61772204 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
61772230 CTAATTTACATAATTACCATTTTACCCT
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
61772258 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
61772285 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
61772312 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
61772339 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
61772366 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
61772393 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
61772409 TAAAATACCC
Statistics
Matches: 358, Mismatches: 43, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
21 17 0.05
24 2 0.01
26 4 0.01
27 331 0.92
28 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:61773677 original size:25 final size:25
Alignment explanation
Indices: 61773648--61773695 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61773638 TTATAACATG
* * *
61773648 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
61773673 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
61773696 GTTTGTGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:61773779 original size:11 final size:11
Alignment explanation
Indices: 61773743--61773798 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
61773733 CATGGTATGT
61773743 ATGATATGCAC
1 ATGATATGCAC
* *
61773754 ATGACATG--T
1 ATGATATGCAC
61773763 ATGATATGCAC
1 ATGATATGCAC
*
61773774 ATGATATG--T
1 ATGATATGCAC
61773783 ATGATATGCAC
1 ATGATATGCAC
61773794 ATGAT
1 ATGAT
61773799 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:61773798 original size:20 final size:20
Alignment explanation
Indices: 61773732--61773798 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
61773722 ATTTTGATAA
*
61773732 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
61773752 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
61773772 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
61773792 ACATGAT
1 ACATGAT
61773799 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:61773879 original size:23 final size:23
Alignment explanation
Indices: 61773849--61773968 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
61773839 AGGAAGTGAA
61773849 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
61773872 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
61773896 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
61773919 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
61773943 AAATGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
61773966 AAA
1 AAA
61773969 AGAGGCTAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 46 0.53
24 41 0.47
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:61773904 original size:24 final size:23
Alignment explanation
Indices: 61773848--61773990 Score: 180
Period size: 24 Copynumber: 6.0 Consensus size: 23
61773838 GAGGAAGTGA
61773848 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
61773871 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
61773894 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
61773918 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
61773941 AAAAATGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
61773966 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
61773990 A
1 A
61773991 TGATAAAGCA
Statistics
Matches: 104, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
23 43 0.41
24 50 0.48
25 11 0.11
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Done.