Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 215 of 345
Found at i:62145228 original size:26 final size:26
Alignment explanation
Indices: 62145190--62145299 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
62145180 CATGAAATTC
*
62145190 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
62145216 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
62145242 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
62145268 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
62145294 TTATCA
1 TTATCA
62145300 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:62146033 original size:43 final size:43
Alignment explanation
Indices: 62145985--62146118 Score: 225
Period size: 43 Copynumber: 3.1 Consensus size: 43
62145975 TATTTTATAA
62145985 CGGCGCTTTCCCCACAAACGCTGCTAAAAGCCATGACTTTTAG
1 CGGCGCTTTCCCCACAAACGCTGCTAAAAGCCATGACTTTTAG
*
62146028 CGGCGCTTTTCCCACAAACG-TCGCTAAAAGCCATGACTTTTAG
1 CGGCGCTTTCCCCACAAACGCT-GCTAAAAGCCATGACTTTTAG
* *
62146071 CGGCGCTTTCCCAACAAACGCCGCTAAAAGCCATGACTTTTAG
1 CGGCGCTTTCCCCACAAACGCTGCTAAAAGCCATGACTTTTAG
62146114 CGGCG
1 CGGCG
62146119 TTTTTTGAAT
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
42 1 0.01
43 84 0.99
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (43 bp):
CGGCGCTTTCCCCACAAACGCTGCTAAAAGCCATGACTTTTAG
Found at i:62146133 original size:43 final size:43
Alignment explanation
Indices: 62145985--62146137 Score: 216
Period size: 43 Copynumber: 3.6 Consensus size: 43
62145975 TATTTTATAA
* * *
62145985 CGGCGCTTTCCCCACAAACGCTGCTAAAAGCCATGACTTTTAG
1 CGGCGCTTTTCCAACAAACGCCGCTAAAAGCCATGACTTTTAG
* *
62146028 CGGCGCTTTTCCCACAAACGTCGCTAAAAGCCATGACTTTTAG
1 CGGCGCTTTTCCAACAAACGCCGCTAAAAGCCATGACTTTTAG
*
62146071 CGGCGCTTTCCCAACAAACGCCGCTAAAAGCCATGACTTTTAG
1 CGGCGCTTTTCCAACAAACGCCGCTAAAAGCCATGACTTTTAG
* ** *
62146114 CGGCGTTTTTTGAATAAACGCCGC
1 CGGCGCTTTTCCAACAAACGCCGC
62146138 AAATTTTTGC
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (43 bp):
CGGCGCTTTTCCAACAAACGCCGCTAAAAGCCATGACTTTTAG
Found at i:62149794 original size:14 final size:14
Alignment explanation
Indices: 62149775--62149803 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
62149765 TCCCTTTCCG
62149775 AGCATGTAACTGGA
1 AGCATGTAACTGGA
62149789 AGCATGTAACTGGA
1 AGCATGTAACTGGA
62149803 A
1 A
62149804 TCAACAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.21
Consensus pattern (14 bp):
AGCATGTAACTGGA
Found at i:62150536 original size:39 final size:39
Alignment explanation
Indices: 62150453--62150549 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
62150443 TGAAACCAAT
*
62150453 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * * *
62150491 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
* *
62150530 TTCCAGCACGTAGCCTGCGG
1 TACCAGCACGAAGCCTGCGG
62150550 ACCTTAAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 14 0.29
39 35 0.71
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:62150568 original size:78 final size:78
Alignment explanation
Indices: 62150486--62150637 Score: 191
Period size: 78 Copynumber: 1.9 Consensus size: 78
62150476 TTAAACCCGG
* * * * *
62150486 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
62150549 GACCTTAAGTCCAGA
64 GACCCTAAGTCCAGA
* * *
62150564 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
62150629 CCCTAAGTC
66 CCCTAAGTC
62150638 TTGATATACA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
77 4 0.06
78 59 0.94
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCCAGA
Found at i:62150573 original size:39 final size:39
Alignment explanation
Indices: 62150520--62150637 Score: 191
Period size: 39 Copynumber: 3.0 Consensus size: 39
62150510 GGACTTTAGC
* * * *
62150520 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
62150559 CCAGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
62150598 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
62150637 C
1 C
62150638 TTGATATACA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:62151092 original size:2 final size:2
Alignment explanation
Indices: 62151085--62151117 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
62151075 TACTTTTAGA
62151085 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
62151118 CGACTTTCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62152611 original size:20 final size:20
Alignment explanation
Indices: 62152573--62152611 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
62152563 TTTGTTCTTC
*
62152573 TTTTCTTATTTCAATTAATA
1 TTTTCTTATTTCAAATAATA
62152593 TTTT-TTATTTCAAAATAAT
1 TTTTCTTATTTC-AAATAAT
62152612 GCAAATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTCTTATTTCAAATAATA
Found at i:62155797 original size:14 final size:15
Alignment explanation
Indices: 62155769--62155797 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
62155759 CAGTTAACTA
62155769 TACTTTAGTTACTTT
1 TACTTTAGTTACTTT
62155784 TACTTTAG-TACTTT
1 TACTTTAGTTACTTT
62155798 AGTAAAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (15 bp):
TACTTTAGTTACTTT
Found at i:62158748 original size:55 final size:54
Alignment explanation
Indices: 62158635--62158825 Score: 235
Period size: 55 Copynumber: 3.5 Consensus size: 54
62158625 AACTTACCAT
* * * * * *
62158635 TGCCATGTCTTGACATGGTTTTACGTGGT-ATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGA-CCTTGCCTTATAGAACTCATCAA
62158688 TGCCATGCCTTGGCATGGTCTTACATGA-GACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGACC-TTGCCTTATAG-AACTCATCAA
* * ** *
62158743 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGACCTTGCCTTATAGAACTCATCAA
62158797 TGCCATGCCTTGGCATGGTCTTACATGAT
1 TGCCATGCCTTGGCATGGTCTTACATGAT
62158826 ATCCTTATCT
Statistics
Matches: 120, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
52 2 0.02
53 33 0.28
54 37 0.31
55 46 0.38
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATGACCTTGCCTTATAGAACTCATCAA
Found at i:62158864 original size:47 final size:47
Alignment explanation
Indices: 62158810--62158931 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
62158800 CATGCCTTGG
*
62158810 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATATTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATATTCCAAA
* * *
62158857 CATGGTCTTACATGGTATCCTTGTCTTACGAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATATTCCAAA
62158904 CATGGTCTTACATGATATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
62158932 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATATTCCAAA
Found at i:62166138 original size:40 final size:40
Alignment explanation
Indices: 62166093--62166296 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
62166083 CGAGATTTAA
* * *
62166093 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
62166133 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
62166173 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
62166213 CCGGATATAGTAACTCGCACAAATGCCTTCGACACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
62166253 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
62166293 CCGG
1 CCGG
62166297 TTATCATCCA
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:62168612 original size:40 final size:39
Alignment explanation
Indices: 62168529--62168720 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
62168519 TTGAATGATG
* * * *
62168529 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
62168569 TCCGGACTAAGATCCGAAGGCGTTCGCGCGAGTTAGTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTACTAAA
* *
62168609 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAA
* *
62168648 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
62168689 -CCGGGCTTTGTCTCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTC-CGAAGGCATTCGTGCGAGT
62168721 CGTTATATCC
Statistics
Matches: 125, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 33 0.26
40 84 0.67
41 8 0.06
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:62168679 original size:79 final size:81
Alignment explanation
Indices: 62168529--62168720 Score: 214
Period size: 79 Copynumber: 2.4 Consensus size: 81
62168519 TTGAATGATG
* * * *
62168529 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
62168593 CGCGCGAGTTAGTA-AA
65 CGCGCGAGTTACTATAA
* **
62168609 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
62168672 CGTGCGAGTTACTATAA
65 CGCGCGAGTTACTATAA
** * *
62168689 -CCGGGCTTTGTCTCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
62168721 CGTTATATCC
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.58
80 39 0.41
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GCGCGAGTTACTATAA
Found at i:62168735 original size:79 final size:77
Alignment explanation
Indices: 62168529--62168746 Score: 188
Period size: 79 Copynumber: 2.7 Consensus size: 77
62168519 TTGAATGATG
* * * * *
62168529 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGG-TTAAG-TCCGAAGGCATT
*
62168593 CGCGCGAGTTAGTAAA
62 CGCGCGAGTTACTAAA
* * * *
62168609 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGTTAAGT-CCGAAGGCATTCG
*
62168674 TGCGAGTTACTATAA
64 CGCGAGTTACTA-AA
** * ** *
62168689 -CCGGGCTTTGTCTCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTT-AAGTCCGAAGG
62168747 TACGTGATTC
Statistics
Matches: 114, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.56
80 49 0.43
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGTCCGAAGGCATTCGCG
CGAGTTACTAAA
Found at i:62170789 original size:6 final size:6
Alignment explanation
Indices: 62170774--62170812 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
62170764 CATGAGAGCC
*
62170774 TTTCTTT TTTTTT TTTCTT TTTCTT TTTC-T TTTCTT TTT
1 TTTC-TT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
62170813 TCATCATCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 5 0.17
6 21 0.72
7 3 0.10
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (6 bp):
TTTCTT
Found at i:62170800 original size:17 final size:17
Alignment explanation
Indices: 62170780--62170812 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
62170770 AGCCTTTCTT
*
62170780 TTTTTTTTTTCTTTTTC
1 TTTTTCTTTTCTTTTTC
62170797 TTTTTCTTTTCTTTTT
1 TTTTTCTTTTCTTTTT
62170813 TCATCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTTC
Found at i:62177475 original size:40 final size:40
Alignment explanation
Indices: 62177396--62177595 Score: 289
Period size: 40 Copynumber: 5.0 Consensus size: 40
62177386 GCATTTAACC
* * *
62177396 GATATAGCT-ACTCGCTCGAATGCC-TCGGGACATAGCCCG
1 GATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
62177435 GATATATTAACTCGCACCAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
62177475 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
62177515 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
62177555 GA-ACTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
62177595 G
1 G
62177596 TTATCATCCA
Statistics
Matches: 148, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 20 0.14
40 127 0.86
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
Found at i:62178873 original size:17 final size:18
Alignment explanation
Indices: 62178851--62178886 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
62178841 ACATGAGAGC
*
62178851 CTTTCT-TTTTTTTTTTT
1 CTTTCTCTTTTCTTTTTT
62178868 CTTTCTCTTTTCTTTTTT
1 CTTTCTCTTTTCTTTTTT
62178886 C
1 C
62178887 ATCATCATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
CTTTCTCTTTTCTTTTTT
Found at i:62182467 original size:73 final size:73
Alignment explanation
Indices: 62182338--62182474 Score: 186
Period size: 73 Copynumber: 1.9 Consensus size: 73
62182328 TGTGGAATGT
* * * ** *
62182338 TATCGACTGGCTCGCTAGAGTGGTACCGTGACAATGGTCTATTGACCTTATGGAGTGACACCACA
1 TATCGACTAGCTCACTAGAGCGACACCGTGACAATGGTCTATTGACCTTATAGAGTGACACCACA
62182403 ATGACAAC
66 ATGACAAC
* *
62182411 TATCGACTAGCTCACTAGAGCGACACTGTGACGATGGTCTATTGA-CTCTATAGAGTGACACCAC
1 TATCGACTAGCTCACTAGAGCGACACCGTGACAATGGTCTATTGACCT-TATAGAGTGACACCAC
62182475 GATGGTGGTT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
72 2 0.04
73 53 0.96
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (73 bp):
TATCGACTAGCTCACTAGAGCGACACCGTGACAATGGTCTATTGACCTTATAGAGTGACACCACA
ATGACAAC
Found at i:62188011 original size:61 final size:61
Alignment explanation
Indices: 62187937--62188059 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
62187927 GCTTGAAAGT
62187937 TAAATAGGTCGTTCTAATGACCAAATATGCTAAAAGCTAATATATGGACAAATGATACGAA
1 TAAATAGGTCGTTCTAATGACCAAATATGCTAAAAGCTAATATATGGACAAATGATACGAA
62187998 TAAATAGGTCGTTCTAATGACCAAATATGCTAAAAGCTAATATATGGACAAATGATACGAA
1 TAAATAGGTCGTTCTAATGACCAAATATGCTAAAAGCTAATATATGGACAAATGATACGAA
62188059 T
1 T
62188060 GAATTGCTTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (61 bp):
TAAATAGGTCGTTCTAATGACCAAATATGCTAAAAGCTAATATATGGACAAATGATACGAA
Found at i:62189110 original size:49 final size:49
Alignment explanation
Indices: 62189037--62189481 Score: 755
Period size: 49 Copynumber: 9.0 Consensus size: 49
62189027 AATATGTATG
*
62189037 ATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
62189086 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
* *
62189135 ATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
* *
62189184 ATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
*
62189233 ATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
*
62189282 ATGTATATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGCGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
*
62189331 ATGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGCGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
* *
62189380 ATGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
*
62189429 ATGTAAATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATG----TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
62189482 GCGTATATCT
Statistics
Matches: 381, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
49 336 0.88
53 45 0.12
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
Found at i:62189619 original size:37 final size:36
Alignment explanation
Indices: 62189564--62189650 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
62189554 AATTTGGAAA
62189564 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
62189602 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
62189639 TATGTCCGGGTA
1 TATGTCCGGGTA
62189651 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:62194460 original size:43 final size:42
Alignment explanation
Indices: 62194304--62194445 Score: 187
Period size: 42 Copynumber: 3.3 Consensus size: 42
62194294 ATGTGATTTT
* *
62194304 GTGTAAGACCACGTTTGGGACATTGGCATCG-ATTTGATATTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTG--A-TTAC
* *
62194348 GTGTAAGACCATGTCTGGGACATTGGCATTGTATTTGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTAC
*
62194390 GTGTAAGACCCTGTCTGGGACATTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTAC
*
62194433 ATGTAAGACCATG
1 GTGTAAGACCATG
62194446 AATGGGATGT
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
42 32 0.37
43 22 0.25
44 28 0.32
45 5 0.06
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTAC
Found at i:62206038 original size:39 final size:39
Alignment explanation
Indices: 62206005--62206148 Score: 207
Period size: 39 Copynumber: 3.7 Consensus size: 39
62205995 CCAACATAAT
*
62206005 TGCCTTCGGGACTTAGCCCAGATATAACACCAACACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAACACGAA
* * * *
62206044 TGCCTTCAGGATTTAGCTCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAACACGAA
* *
62206083 TGCCTCCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAACACGAA
* *
62206122 TGCCTTCGGGACTTAGACTGGATATAA
1 TGCCTTCGGGACTTAGCCCGGATATAA
62206149 ATCTCACACA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATATAACACCAACACGAA
Found at i:62209932 original size:40 final size:40
Alignment explanation
Indices: 62209877--62210040 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
62209867 TGAATGATAC
* * * *
62209877 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
62209917 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
62209957 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
62209997 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
62210037 CCGG
1 CCGG
62210041 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:62211731 original size:17 final size:18
Alignment explanation
Indices: 62211702--62211741 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
62211692 TTTTAGCTCG
62211702 ATTTTTGATAATTTCTAT
1 ATTTTTGATAATTTCTAT
62211720 ATTTTTGA-AATTTCTAT
1 ATTTTTGATAATTTCTAT
*
62211737 GTTTT
1 ATTTT
62211742 GAGATGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62
Consensus pattern (18 bp):
ATTTTTGATAATTTCTAT
Found at i:62212431 original size:44 final size:43
Alignment explanation
Indices: 62212368--62212526 Score: 166
Period size: 42 Copynumber: 3.7 Consensus size: 43
62212358 TATGTGATTT
* * *
62212368 CGTGTAAGTCCACATCTGGGACGTTGGCATCGATTTGATAGTTA
1 CGTGTAAGACCACGTCTGGGACTTTGGCATCGATTTGAT-GTTA
* *
62212412 CGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGAT-TT-
1 CGTGTAAGACCACGTCTGGGACTTTGGCATCG-ATTTGATGTTA
* *
62212454 TGTGTAAGACCATGTCTGGGA-TTGTGGCATCGATATT--TGATTA
1 CGTGTAAGACCACGTCTGGGACTT-TGGCATCGAT-TTGATG-TTA
*
62212497 CATGTAAGACCACGTCTGGGACTTTGGCAT
1 CGTGTAAGACCACGTCTGGGACTTTGGCAT
62212527 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 32 0.32
43 26 0.26
44 30 0.30
45 7 0.07
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACTTTGGCATCGATTTGATGTTA
Found at i:62212471 original size:42 final size:42
Alignment explanation
Indices: 62212362--62212526 Score: 190
Period size: 43 Copynumber: 3.9 Consensus size: 42
62212352 TTCCGATATG
* * *
62212362 TGATTTCGTGTAAGTCCACATCTGGGACGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACCACGTCTGGGACTTTGGCATCGTATT
* *
62212403 TGATAGTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
1 TGAT--TT-CGTGTAAGACCACGTCTGGGACTTTGGCATCGTATT
* *
62212448 TGATTTTGTGTAAGACCATGTCTGGGA-TTGTGGCATCGATATT
1 TGATTTCGTGTAAGACCACGTCTGGGACTT-TGGCATCG-TATT
* *
62212491 TGATTACATGTAAGACCACGTCTGGGACTTTGGCAT
1 TGATTTCGTGTAAGACCACGTCTGGGACTTTGGCAT
62212527 TGTACGAGCT
Statistics
Matches: 107, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
41 5 0.05
42 28 0.26
43 37 0.35
44 30 0.28
45 7 0.07
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTGGGACTTTGGCATCGTATT
Found at i:62220632 original size:40 final size:40
Alignment explanation
Indices: 62220572--62220789 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
62220562 CGGATGATAA
* * *
62220572 CCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
62220612 CCGGTCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
62220652 TCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
62220692 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
62220732 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
62220772 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
62220790 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 17 0.11
40 143 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:62227287 original size:40 final size:40
Alignment explanation
Indices: 62227232--62227452 Score: 322
Period size: 40 Copynumber: 5.5 Consensus size: 40
62227222 TATTCGAATG
*
62227232 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
62227272 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
*
62227312 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
62227352 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* * *
62227392 ATATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
62227432 ATATCC-GGCTAAATCTCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
62227453 ATGCTTGGGT
Statistics
Matches: 166, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 13 0.08
40 150 0.90
41 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:62230270 original size:21 final size:21
Alignment explanation
Indices: 62230246--62230288 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
62230236 TTATGATAAA
62230246 ACTGAACTATGATAACTAACG
1 ACTGAACTATGATAACTAACG
62230267 ACTGAACTATGATAACTAACG
1 ACTGAACTATGATAACTAACG
62230288 A
1 A
62230289 GATGGATTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.23
Consensus pattern (21 bp):
ACTGAACTATGATAACTAACG
Found at i:62232548 original size:37 final size:37
Alignment explanation
Indices: 62232498--62232620 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
62232488 TTATTACGAA
*
62232498 GTCTTACCCGGACATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
62232535 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
62232572 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
62232609 GTCTTACCCGGA
1 GTCTTACCCGGA
62232621 ATATATTTCC
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:62232736 original size:48 final size:48
Alignment explanation
Indices: 62232665--62233126 Score: 897
Period size: 48 Copynumber: 9.6 Consensus size: 48
62232655 TGTTACAACA
* *
62232665 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62232713 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
62232761 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62232809 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62232857 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62232905 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62232953 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62233001 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62233049 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62233097 TTCACATTAGCCATTCGGCTTTACCACATA
1 TTCACATTAGCCATTCGGCTTTACCACATA
62233127 ATTACACTTT
Statistics
Matches: 410, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 410 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
Found at i:62234653 original size:13 final size:13
Alignment explanation
Indices: 62234635--62234659 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62234625 CACTAAATTT
62234635 TCATGGATTCAAA
1 TCATGGATTCAAA
62234648 TCATGGATTCAA
1 TCATGGATTCAA
62234660 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:62237060 original size:40 final size:40
Alignment explanation
Indices: 62236784--62237047 Score: 476
Period size: 40 Copynumber: 6.6 Consensus size: 40
62236774 CCAGCATGAT
* * * *
62236784 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
62236824 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
62236864 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
62236904 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
62236944 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
62236984 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
62237024 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
62237048 TAACCACAAG
Statistics
Matches: 218, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
39 7 0.03
40 211 0.97
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:62237090 original size:40 final size:40
Alignment explanation
Indices: 62236936--62237164 Score: 142
Period size: 40 Copynumber: 5.7 Consensus size: 40
62236926 ATACATCACT
* ** * * * *
62236936 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* ** * * * *
62236976 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* **
62237016 AGCACGAATGCTCTTCGGAACTTAG-CCGGATATAACCACA
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* * * * *
62237056 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCAC-A
** *
62237097 A-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
* * *
62237136 AGCATAAATGCCTTTGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
62237165 GTATCATTCA
Statistics
Matches: 164, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 18 0.11
40 145 0.88
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
Found at i:62237106 original size:120 final size:119
Alignment explanation
Indices: 62236784--62237161 Score: 388
Period size: 120 Copynumber: 3.2 Consensus size: 119
62236774 CCAGCATGAT
* * ** * * **
62236784 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCTTCGGAACTTAACCCGGATA
* *
62236849 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
65 CAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * **
62236904 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCTTCGGAACTTAACCCGGATA
* *
62236969 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
65 CAACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
** *
62237024 TGCTCTTCGGAACTTAGCCGGATATAACCACAAGCAC-AATTGC-CTTCGGGTCTTAACCCGGGT
1 TGCTCTTCGGAACTTAGCCGGATA-AACCACAAGCACGAA-TGCTCTTCGGAACTTAACCCGGAT
* ** * * **
62237087 ATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
64 ACAAC-ACT-AGCACAAATGCTCTTCGGAACTTAGTCCGGATACA-TCACTAGCACGAA
* *
62237144 TGC-CTTTGGGACTTAGCC
1 TGCTCTTCGGAACTTAGCC
62237162 CGGGTATCAT
Statistics
Matches: 228, Mismatches: 25, Indels: 11
0.86 0.09 0.04
Matches are distributed among these distances:
119 59 0.26
120 168 0.74
121 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (119 bp):
TGCTCTTCGGAACTTAGCCGGATAAACCACAAGCACGAATGCTCTTCGGAACTTAACCCGGATAC
AACACTAGCACAAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:62239160 original size:36 final size:37
Alignment explanation
Indices: 62239077--62239198 Score: 228
Period size: 37 Copynumber: 3.3 Consensus size: 37
62239067 TTATTACGAA
*
62239077 GTCTTACCCGGACATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
62239114 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
62239150 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
62239187 GTCTTACCCGGA
1 GTCTTACCCGGA
62239199 ATATATTTCC
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
36 36 0.43
37 47 0.57
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:62239314 original size:48 final size:48
Alignment explanation
Indices: 62239243--62239560 Score: 600
Period size: 48 Copynumber: 6.6 Consensus size: 48
62239233 TGTTACAACA
* *
62239243 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62239291 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
62239339 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62239387 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
62239435 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62239483 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
62239531 TTCACATTAGCCATTCGGCTTTACCACATA
1 TTCACATTAGCCATTCGGCTTTACCACATA
62239561 ATTACACTTT
Statistics
Matches: 264, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 264 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
Found at i:62241084 original size:13 final size:13
Alignment explanation
Indices: 62241066--62241090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62241056 CACTAAATTT
62241066 TCATGGATTCAAA
1 TCATGGATTCAAA
62241079 TCATGGATTCAA
1 TCATGGATTCAA
62241091 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:62247236 original size:46 final size:46
Alignment explanation
Indices: 62247181--62247361 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
62247171 TAGGATGGTT
62247181 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * * *
62247227 GAGCGTCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
62247273 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
62247320 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62247362 GCGGGTTACG
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 70 0.61
47 32 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:62247320 original size:93 final size:93
Alignment explanation
Indices: 62247183--62247353 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
62247173 GGATGGTTGA
* *
62247183 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
62247248 TGAGTCCAAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
*
62247276 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
62247341 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
62247354 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:62250548 original size:40 final size:40
Alignment explanation
Indices: 62250504--62250708 Score: 248
Period size: 40 Copynumber: 4.8 Consensus size: 40
62250494 TATCTAGCAC
* * *
62250504 AGCCTGCAGGTCTTTAAGGCCGGATACAATTCCAGCATGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
*
62250544 AGCCTGCGGGTCTTTAAGCCCGGATTCAATTCCAGCACGAAGCAAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATT------C----C-AGCACGA
62250595 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
*
62250635 AGCCTGCGGGTCTTTAAGCCCGAATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* *
62250675 AGCTTGCGGGTCTTTAAGCCCTGATACAATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
62250709 CAACAAATAA
Statistics
Matches: 145, Mismatches: 9, Indels: 22
0.82 0.05 0.12
Matches are distributed among these distances:
40 105 0.72
41 1 0.01
45 1 0.01
46 1 0.01
50 1 0.01
51 36 0.25
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.21
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:62250618 original size:51 final size:51
Alignment explanation
Indices: 62250537--62250637 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
62250527 ATACAATTCC
* *
62250537 AGCATGAAGCCTGCGGGTCTTTAAGCCCGGATTCAATTCCAGCACGAAGCA
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCA
62250588 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGC
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGC
62250638 CTGCGGGTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.28, C:0.29, G:0.26, T:0.18
Consensus pattern (51 bp):
AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCA
Found at i:62250665 original size:91 final size:91
Alignment explanation
Indices: 62250504--62250677 Score: 303
Period size: 91 Copynumber: 1.9 Consensus size: 91
62250494 TATCTAGCAC
* * *
62250504 AGCCTGCAGGTCTTTAAGGCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCCGGAT
1 AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGAAT
*
62250569 TCAATTCCAGCACGAAGCAAGCACGA
66 ACAATTCCAGCACGAAGCAAGCACGA
*
62250595 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGAAT
1 AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGAAT
62250660 ACAATTCCAGCACGAAGC
66 ACAATTCCAGCACGAAGC
62250678 TTGCGGGTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.20
Consensus pattern (91 bp):
AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGAAT
ACAATTCCAGCACGAAGCAAGCACGA
Found at i:62260088 original size:27 final size:26
Alignment explanation
Indices: 62260032--62260088 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
62260022 CAACCTTAAC
* * *
62260032 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
62260058 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
62260085 CCTA
1 CCTA
62260089 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:62262945 original size:30 final size:29
Alignment explanation
Indices: 62262890--62263019 Score: 210
Period size: 29 Copynumber: 4.5 Consensus size: 29
62262880 ATAGTGAATC
62262890 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
62262919 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
62262949 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
62262978 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
62263006 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62263020 CGAGACCAAT
Statistics
Matches: 97, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
27 2 0.02
28 17 0.18
29 49 0.51
30 29 0.30
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:62262982 original size:59 final size:57
Alignment explanation
Indices: 62262890--62263019 Score: 217
Period size: 59 Copynumber: 2.2 Consensus size: 57
62262880 ATAGTGAATC
*
62262890 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
62262949 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
62263006 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62263020 CGAGACCAAT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
56 2 0.03
57 17 0.25
59 50 0.72
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:62271733 original size:40 final size:40
Alignment explanation
Indices: 62271667--62271833 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62271657 AAATTGAATG
* * *
62271667 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
62271706 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
62271746 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62271786 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62271826 ATATCCGG
1 ATATCCGG
62271834 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62285244 original size:48 final size:48
Alignment explanation
Indices: 62285188--62285439 Score: 222
Period size: 48 Copynumber: 5.2 Consensus size: 48
62285178 GTGAGTTTCT
* * * *
62285188 GATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCC
* * *
62285236 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAGGCC
* * * * *
62285284 GATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCC
* * * ** * **
62285332 GATGCCATATCCCACACATGGTCTTACACTGGCTCTCGCAAC-ATCCCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGA-GGCC
* * * ** *
62285380 GATGCCATGTTCCAAATATGGTCTTACACTTACTCTA-ATATCGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATATCGAGGCC
62285428 GATGCCATGTCC
1 GATGCCATGTCC
62285440 TAGATGTGGC
Statistics
Matches: 159, Mismatches: 40, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
47 3 0.02
48 155 0.97
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCC
Found at i:62285351 original size:96 final size:96
Alignment explanation
Indices: 62285186--62285409 Score: 279
Period size: 96 Copynumber: 2.3 Consensus size: 96
62285176 GGGTGAGTTT
* * * * * * *
62285186 CTGATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATGTCGAGGCCGATGCCATGTCCCAG
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATATCCCAC
62285251 ACATGGTCTTACACTGGCTCTCATAATGTGG
66 ACATGGTCTTACACTGGCTCTCATAATGTGG
* *
62285282 CTGATGCCATG-TCCTAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATATCCCA
1 CTGATGCCATGTTCC-AAACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATATCCCA
** ** **
62285346 CACATGGTCTTACACTGGCTCTCGCAACATCC
65 CACATGGTCTTACACTGGCTCTCATAATGTGG
* *
62285378 CCGATGCCATGTTCCAAATATGGTCTTACACT
1 CTGATGCCATGTTCCAAACATGGTCTTACACT
62285410 TACTCTAATA
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
95 3 0.03
96 102 0.94
97 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (96 bp):
CTGATGCCATGTTCCAAACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATATCCCAC
ACATGGTCTTACACTGGCTCTCATAATGTGG
Found at i:62285421 original size:96 final size:95
Alignment explanation
Indices: 62285188--62285435 Score: 261
Period size: 96 Copynumber: 2.6 Consensus size: 95
62285178 GTGAGTTTCT
* * * * *
62285188 GATGCCATGTTCCAAACATGGTCTTACA-TTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGA
1 GATGCCATGTTCCAAACATGGTCTTACACTT-ACTCACATATC-ATGCCGATGCCATATCCCACA
* ** ** *
62285252 CATGGTCTTACACTGGCTCTCATAATGTGGCT
64 CATGGTCTTACACTGGCTCTCACAACATCCCC
* *
62285284 GATGCCATG-TCCTAGACATGGTCTTACAC-TAGCACACATATCAATGCCGATGCCATATCCCAC
1 GATGCCATGTTCC-AAACATGGTCTTACACTTA-CTCACATATC-ATGCCGATGCCATATCCCAC
*
62285347 ACATGGTCTTACACTGGCTCTCGCAACATCCCC
63 ACATGGTCTTACACTGGCTCTCACAACATCCCC
* *
62285380 GATGCCATGTTCCAAATATGGTCTTACACTTACTCTA-ATATCGTGGCCGATGCCAT
1 GATGCCATGTTCCAAACATGGTCTTACACTTACTC-ACATATCAT-GCCGATGCCAT
62285436 GTCCTAGATG
Statistics
Matches: 126, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
95 4 0.03
96 116 0.92
97 6 0.05
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (95 bp):
GATGCCATGTTCCAAACATGGTCTTACACTTACTCACATATCATGCCGATGCCATATCCCACACA
TGGTCTTACACTGGCTCTCACAACATCCCC
Found at i:62289846 original size:47 final size:47
Alignment explanation
Indices: 62289723--62289852 Score: 151
Period size: 46 Copynumber: 2.8 Consensus size: 47
62289713 TGTAACCTGC
* * *
62289723 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCCTTTACAT
*
62289769 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-GCCT--TTACAT
* *
62289819 -C-TTA-CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
62289853 ACTCAACCAC
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
46 36 0.48
47 28 0.37
48 5 0.07
49 1 0.01
50 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCCTTTACAT
Found at i:62290323 original size:30 final size:30
Alignment explanation
Indices: 62290278--62290337 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62290268 ATTTAATACG
62290278 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
62290308 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
62290338 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:62294584 original size:13 final size:13
Alignment explanation
Indices: 62294566--62294591 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62294556 TTGAATCCCT
62294566 ACCAAAACAATCA
1 ACCAAAACAATCA
62294579 ACCAAAACAATCA
1 ACCAAAACAATCA
62294592 TGAAGCATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:62298139 original size:48 final size:48
Alignment explanation
Indices: 62298066--62298392 Score: 211
Period size: 48 Copynumber: 6.8 Consensus size: 48
62298056 GGTGAGTTGC
* * * *
62298066 CGATTCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGAT-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-A-ATGT
* ** * *
62298115 -GATGCCATGTCCCAGACATAGTCTTACACTAACTCTCGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAATGT
*
62298162 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCA--T-AATGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA--T-GT
* * * * ** * *
62298210 CGATGCCATGTTCCAAACATGGTCCTACACTAGCGGACATATCAATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAATGT
* * * * * *
62298258 CGATGCCATGTCTCAAACATGGTCTTACACTAGCTCTCA-C-AACATCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCA-AT-GT
* * * * * * * *
62298306 CGATGTCATGTTCCAAACATGGTCTTACATTGGCTCTCATATC-GTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAATGT
* ** *
62298353 CAATGCCATGTCCCAGATGTGGTCTTACACTGGCACACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
62298393 ATCACCCAAA
Statistics
Matches: 216, Mismatches: 50, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
45 2 0.01
46 4 0.02
47 37 0.17
48 169 0.78
49 1 0.00
50 1 0.00
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAATGT
Found at i:62298239 original size:96 final size:96
Alignment explanation
Indices: 62298066--62298393 Score: 300
Period size: 96 Copynumber: 3.4 Consensus size: 96
62298056 GGTGAGTTGC
* * * * * * * *
62298066 CGATTCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-GTCGAGATTGATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAT-GTGGTCGATGCCATGTTCCAA
* * * *
62298130 ACATAGTCTTACACTAACTCTCGTCTCAATGT
65 ACATGGTCTTACACTAGCTCTCATATCAATGT
* *
62298162 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAATGTGGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGGTCGATGCCATGTTCCAAA
* *** *
62298227 CATGGTCCTACACTAGCGGACATATCAATAT
66 CATGGTCTTACACTAGCTCTCATATCAATGT
* * * * ** * * *
62298258 CGATGCCATGTCTCAAACATGGTCTTACACTAGCTCTCACAACATCGCCGATGTCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGGTCGATGCCATGTTCCAAA
* * * *
62298323 CATGGTCTTACATTGGCTCTCATATC-GTGG
66 CATGGTCTTACACTAGCTCTCATATCAATGT
* * ** *
62298353 CAATGCCATGTCCCAGATGTGGTCTTACACTGGCACACATA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA
62298394 TCACCCAAAT
Statistics
Matches: 184, Mismatches: 47, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
95 33 0.18
96 150 0.82
97 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGGTCGATGCCATGTTCCAAA
CATGGTCTTACACTAGCTCTCATATCAATGT
Found at i:62298331 original size:144 final size:143
Alignment explanation
Indices: 62298066--62298396 Score: 344
Period size: 144 Copynumber: 2.3 Consensus size: 143
62298056 GGTGAGTTGC
* * * * * * * *
62298066 CGATTCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGATTGATGCCATGTCCCAGA
1 CGATGCCATGTTCCAAACATGGTCCTACACTAGCGCACATATCAAGATCGATGCCATGTCCCAAA
* * * *
62298131 CATAGTCTTACACTAACTCTCGTCTCAATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGC
66 CATAGTCTTACACTAACTCTCGACACAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
62298196 TCCCATAAT-GTGG
131 TCCCAT-ATCGTGG
* * *
62298209 TCGATGCCATGTTCCAAACATGGTCCTACACTAGCGGACATATCAATATCGATGCCATGTCTCAA
1 -CGATGCCATGTTCCAAACATGGTCCTACACTAGCGCACATATCAAGATCGATGCCATGTCCCAA
* * * * *
62298274 ACATGGTCTTACACTAGCTCTC-ACA-ACATCGCCGATGTCATGTTCCAAACATGGTCTTACATT
65 ACATAGTCTTACACTAACTCTCGACACA-AT-GCCGATGCCATGTCCCAAACATGGTCTTACACT
*
62298337 GGCTCTCATATCGTGG
128 GGCTCCCATATCGTGG
* * * ** * * *
62298353 CAATGCCATGTCCCAGATGTGGTCTTACACTGGCACACATATCA
1 CGATGCCATGTTCCAAACATGGTCCTACACTAGCGCACATATCA
62298397 CCCAAATGTC
Statistics
Matches: 154, Mismatches: 30, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
142 1 0.01
143 40 0.26
144 113 0.73
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (143 bp):
CGATGCCATGTTCCAAACATGGTCCTACACTAGCGCACATATCAAGATCGATGCCATGTCCCAAA
CATAGTCTTACACTAACTCTCGACACAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
TCCCATATCGTGG
Found at i:62309050 original size:13 final size:13
Alignment explanation
Indices: 62309032--62309060 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
62309022 AAACTATCCA
62309032 TTTGTTTGAGTGT
1 TTTGTTTGAGTGT
62309045 TTTGTTTGAGTGT
1 TTTGTTTGAGTGT
62309058 TTT
1 TTT
62309061 AAAAGATTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.28, T:0.66
Consensus pattern (13 bp):
TTTGTTTGAGTGT
Found at i:62316297 original size:42 final size:42
Alignment explanation
Indices: 62316251--62316332 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
62316241 CGATATCTCG
* * *
62316251 TATCGATGCCATGCCCCAGACATGGTCTTATACGAAATCAAA
1 TATCGATGCCATACCCCAAACATGGTCTTAAACGAAATCAAA
* * * *
62316293 TATCGATGTCATATCCCAAATATGGTCTTAAATGAAATCA
1 TATCGATGCCATACCCCAAACATGGTCTTAAACGAAATCA
62316333 CACATAACCC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (42 bp):
TATCGATGCCATACCCCAAACATGGTCTTAAACGAAATCAAA
Found at i:62332572 original size:22 final size:21
Alignment explanation
Indices: 62332545--62332599 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
62332535 TAATTAACTT
62332545 ATTTCTTGATTTTTAAATTTTA
1 ATTTCTTGATTTTTAAA-TTTA
* *
62332567 ATTTCTTAATTTTGAAATTTA
1 ATTTCTTGATTTTTAAATTTA
62332588 A-TT-TTGATTTTT
1 ATTTCTTGATTTTT
62332600 TAAAAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 7 0.24
20 2 0.07
21 5 0.17
22 15 0.52
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (21 bp):
ATTTCTTGATTTTTAAATTTA
Found at i:62332656 original size:19 final size:19
Alignment explanation
Indices: 62332553--62332670 Score: 62
Period size: 21 Copynumber: 5.9 Consensus size: 19
62332543 TTATTTCTTG
*
62332553 ATTTTTAAATTTTAATTTCTT
1 ATTTTTAAA-ATTAATTT-TT
* * *
62332574 AATTTTGAAATTTAATTTTG
1 -ATTTTTAAAATTAATTTTT
*
62332594 ATTTTTTAAAAAATAA-TTTT
1 A-TTTTT-AAAATTAATTTTT
* *
62332614 A-TGTTAAACTATAATTAATTT
1 ATTTTTAAAAT-TAATT--TTT
*
62332635 ATTTCTT-TAATTAATTTTT
1 ATTT-TTAAAATTAATTTTT
62332654 ATTTTTAAAATTAATTT
1 ATTTTTAAAATTAATTT
62332671 CAGTTTAATT
Statistics
Matches: 74, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
17 3 0.04
18 8 0.11
19 18 0.24
20 9 0.12
21 23 0.31
22 11 0.15
23 2 0.03
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (19 bp):
ATTTTTAAAATTAATTTTT
Found at i:62332705 original size:18 final size:18
Alignment explanation
Indices: 62332682--62332814 Score: 105
Period size: 18 Copynumber: 7.6 Consensus size: 18
62332672 AGTTTAATTC
*
62332682 ATTTAATTTTACAACCAT
1 ATTTAATTTTAAAACCAT
* * ** *
62332700 ATTTAACTCTAAAATTAA
1 ATTTAATTTTAAAACCAT
62332718 ATATT--TTTTAAAACCAT
1 AT-TTAATTTTAAAACCAT
*
62332735 ATTTAATTTTACAACCAT
1 ATTTAATTTTAAAACCAT
* *
62332753 ATTGAATTTTAAAA--TT
1 ATTTAATTTTAAAACCAT
**
62332769 AAAT-ATTTTAAAACCAT
1 ATTTAATTTTAAAACCAT
* *
62332786 ATTTAATTTTAAAGCAAT
1 ATTTAATTTTAAAACCAT
62332804 ATTTAATTTTA
1 ATTTAATTTTA
62332815 TTTTATTTTA
Statistics
Matches: 86, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
15 9 0.10
16 4 0.05
17 12 0.14
18 59 0.69
19 2 0.02
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTTAATTTTAAAACCAT
Found at i:62332748 original size:53 final size:51
Alignment explanation
Indices: 62332682--62332809 Score: 186
Period size: 53 Copynumber: 2.5 Consensus size: 51
62332672 AGTTTAATTC
62332682 ATTTAATTTTACAACCATATTTAACTCTAAAATTAAATATTTTTTAAAACCAT
1 ATTTAATTTTACAACCATATTTAACTCTAAAATTAAATA--TTTTAAAACCAT
* * *
62332735 ATTTAATTTTACAACCATATTGAATTTTAAAATTAAATATTTTAAAACCAT
1 ATTTAATTTTACAACCATATTTAACTCTAAAATTAAATATTTTAAAACCAT
*
62332786 ATTTAATTTTA-AAGCAATATTTAA
1 ATTTAATTTTACAA-CCATATTTAA
62332810 TTTTATTTTA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
50 2 0.03
51 31 0.45
53 36 0.52
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.44
Consensus pattern (51 bp):
ATTTAATTTTACAACCATATTTAACTCTAAAATTAAATATTTTAAAACCAT
Found at i:62332806 original size:51 final size:52
Alignment explanation
Indices: 62332682--62332814 Score: 198
Period size: 51 Copynumber: 2.6 Consensus size: 52
62332672 AGTTTAATTC
* *
62332682 ATTTAATTTTACAACCATATTTAACTCTAAAATTAAATATTTTTTAAAACCAT
1 ATTTAATTTTACAACCATATTTAATTTTAAAATTAAATA-TTTTTAAAACCAT
*
62332735 ATTTAATTTTACAACCATATTGAATTTTAAAATTAAATA-TTTTAAAACCAT
1 ATTTAATTTTACAACCATATTTAATTTTAAAATTAAATATTTTTAAAACCAT
*
62332786 ATTTAATTTTA-AAGCAATATTTAATTTTA
1 ATTTAATTTTACAA-CCATATTTAATTTTA
62332815 TTTTATTTTA
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 2 0.03
51 36 0.49
53 36 0.49
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.45
Consensus pattern (52 bp):
ATTTAATTTTACAACCATATTTAATTTTAAAATTAAATATTTTTAAAACCAT
Found at i:62343203 original size:28 final size:28
Alignment explanation
Indices: 62343142--62343239 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62343132 TCACAAATTG
** * *
62343142 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62343171 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62343199 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62343227 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62343240 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62350873 original size:28 final size:28
Alignment explanation
Indices: 62350812--62350909 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62350802 TCACAAATTG
** * *
62350812 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62350841 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62350869 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62350897 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62350910 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62354385 original size:31 final size:31
Alignment explanation
Indices: 62354343--62354407 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
62354333 TTAAATATTC
62354343 TCAATTAAACCACAAACATAGCATTTGTATG
1 TCAATTAAACCACAAACATAGCATTTGTATG
*
62354374 TCAATTGAACCACAAACATAGCATTTGTATG
1 TCAATTAAACCACAAACATAGCATTTGTATG
62354405 TCA
1 TCA
62354408 CCATACATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (31 bp):
TCAATTAAACCACAAACATAGCATTTGTATG
Found at i:62359474 original size:40 final size:39
Alignment explanation
Indices: 62359429--62359593 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 39
62359419 CGGAATATAA
62359429 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62359469 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
** * *
62359507 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
62359547 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA--TCACTGCACAAATGCCTTCGGGTCTTAGC
62359586 CCGGATAT
1 CCGGATAT
62359594 CATTCAATTT
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
38 33 0.31
39 13 0.12
40 57 0.54
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:62374746 original size:39 final size:39
Alignment explanation
Indices: 62374692--62374924 Score: 403
Period size: 39 Copynumber: 6.0 Consensus size: 39
62374682 AAGACACTGA
62374692 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
62374731 AAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
62374770 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
62374809 AAATATATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
62374848 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
62374887 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
62374925 ATAATATAAT
Statistics
Matches: 184, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 184 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:62380870 original size:49 final size:49
Alignment explanation
Indices: 62380798--62380985 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
62380788 TGAGGTCACG
*
62380798 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
*** * * * * *
62380847 TGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
*
62380898 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
62380947 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
62380986 GCTTCAGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 76 0.65
50 2 0.02
51 39 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:62380966 original size:100 final size:100
Alignment explanation
Indices: 62380793--62380980 Score: 349
Period size: 100 Copynumber: 1.9 Consensus size: 100
62380783 TATTGTGAGG
*
62380793 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
62380858 AAGTGCAGGCTACTATACGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATACGTACCCGAAAACTGTGA
*
62380893 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
62380958 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATACGTACC
62380981 AGATAGCTTC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATACGTACCCGAAAACTGTGA
Found at i:62383423 original size:19 final size:19
Alignment explanation
Indices: 62383399--62383444 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
62383389 ACATAACTAA
62383399 TGACTTTCCAT-CAATAAGT
1 TGACTTTCCATAC-ATAAGT
*
62383418 TGACTTTCTATACATAAGT
1 TGACTTTCCATACATAAGT
*
62383437 TGTCTTTC
1 TGACTTTC
62383445 TTCTTAAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 23 0.96
20 1 0.04
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.43
Consensus pattern (19 bp):
TGACTTTCCATACATAAGT
Found at i:62384454 original size:12 final size:12
Alignment explanation
Indices: 62384437--62384461 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62384427 TATCCTTTAA
62384437 AGAGTTATCTTG
1 AGAGTTATCTTG
62384449 AGAGTTATCTTG
1 AGAGTTATCTTG
62384461 A
1 A
62384462 AAACTCTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (12 bp):
AGAGTTATCTTG
Found at i:62384685 original size:38 final size:38
Alignment explanation
Indices: 62384643--62384721 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
62384633 TAGGTGGACT
62384643 TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
1 TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
62384681 TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
1 TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
62384719 TCA
1 TCA
62384722 CCAATTATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (38 bp):
TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
Found at i:62386587 original size:18 final size:18
Alignment explanation
Indices: 62386564--62386623 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
62386554 AAATTATCAC
62386564 TATTTTTATATATTATTA
1 TATTTTTATATATTATTA
*
62386582 TATTTTTCACATA-TATTA
1 TATTTTT-ATATATTATTA
*
62386600 TATATTTAT-TAATTATATA
1 TATTTTTATAT-ATTAT-TA
62386619 TATTT
1 TATTT
62386624 ACATGTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
16 1 0.03
17 2 0.06
18 21 0.62
19 10 0.29
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTATATATTATTA
Found at i:62386678 original size:43 final size:42
Alignment explanation
Indices: 62386593--62386695 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 42
62386583 ATTTTTCACA
*
62386593 TATATTATATATTTATTAATTATATATATTTACATGTTATTT
1 TATATTATATATTTATTAATTATATATATTTACATGTCATTT
* * *
62386635 TATATTATATCTATTA-TAATTCTTATATATTTATAT-TACATTT
1 TATATTATATAT-TTATTAATT-ATATATATTTACATGT-CATTT
62386678 TAT-TATATAATATTTATT
1 TATAT-TAT-ATATTTATT
62386696 TATTTTTATA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
42 18 0.36
43 28 0.56
44 4 0.08
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (42 bp):
TATATTATATATTTATTAATTATATATATTTACATGTCATTT
Found at i:62394087 original size:96 final size:97
Alignment explanation
Indices: 62393978--62394168 Score: 366
Period size: 96 Copynumber: 2.0 Consensus size: 97
62393968 ATGTATGAGA
62393978 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
62394042 GCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTG
62394074 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
62394139 GGCCTAATGGCCGATGTGATGAATGTGAAA
65 GGCCTAATGGCCGATGTGATGAATGTGAAA
62394169 TATATGTGTG
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
96 49 0.53
98 44 0.47
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (97 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:62394183 original size:49 final size:49
Alignment explanation
Indices: 62393978--62394168 Score: 368
Period size: 49 Copynumber: 3.9 Consensus size: 49
62393968 ATGTATGAGA
62393978 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62394027 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62394074 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62394123 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
62394169 TATATGTGTG
Statistics
Matches: 140, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
47 47 0.34
49 93 0.66
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:62394201 original size:98 final size:98
Alignment explanation
Indices: 62394003--62394297 Score: 297
Period size: 98 Copynumber: 3.1 Consensus size: 98
62393993 AGGCCTAATG
62394003 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * *
62394066 TGAAAGTGTATATAT-ATGTG-ATAAG-GCCTAATG
66 TGAAA-TATATGTGTGATGTGTATATGTG-GTAA-A
62394099 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
62394164 TGAAATATATGTGTGATGTGTATATGTGGTAAA
66 TGAAATATATGTGTGATGTGTATATGTGGTAAA
* * * * * * * * * *
62394197 GCCGAAGGGCT-AATGTGAAACATATATAAGATATGTG-TATGTG-GTAA-AGCCGAATG-GCT-
1 GCCGATGTGATGAATGTGAAA-GTGTAT-ATATATGTGATAAG-GCCTAATGGCCG-ATGTGATG
*
62394256 AATGTGAAATATATGTGTGATATGTATATGTGGTAAA
62 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAA
62394293 GCCGA
1 GCCGA
62394298 ATGGCTAATG
Statistics
Matches: 173, Mismatches: 17, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
96 65 0.38
97 21 0.12
98 70 0.40
99 16 0.09
100 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (98 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAATATATGTGTGATGTGTATATGTGGTAAA
Found at i:62394238 original size:48 final size:48
Alignment explanation
Indices: 62394182--62394311 Score: 206
Period size: 48 Copynumber: 2.7 Consensus size: 48
62394172 ATGTGTGATG
*
62394182 TGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATAAGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
* * * **
62394230 TGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
62394278 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62394312 TGTTGTAATA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
Found at i:62394427 original size:36 final size:37
Alignment explanation
Indices: 62394351--62394476 Score: 202
Period size: 36 Copynumber: 3.4 Consensus size: 37
62394341 AACTTGGAAA
* *
62394351 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACATGTGGAGAT
62394389 TATGTCCGGGTAAGACCCGATGACTAC-TGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
62394425 TATGTCCGGGTAAGA-CCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
62394461 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
62394477 TTCGTAATAA
Statistics
Matches: 84, Mismatches: 2, Indels: 5
0.92 0.02 0.05
Matches are distributed among these distances:
35 11 0.13
36 47 0.56
37 22 0.26
38 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
Found at i:62396353 original size:40 final size:40
Alignment explanation
Indices: 62396298--62396609 Score: 552
Period size: 40 Copynumber: 7.8 Consensus size: 40
62396288 GAGAATTGAG
*
62396298 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62396338 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
62396378 AGTGATATATCCGGACTAAGTTCCGAAGGGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62396418 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62396458 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62396498 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62396538 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
62396578 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
62396610 ATCATGTTGG
Statistics
Matches: 264, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 264 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:62397410 original size:40 final size:39
Alignment explanation
Indices: 62397355--62397436 Score: 110
Period size: 40 Copynumber: 2.1 Consensus size: 39
62397345 GAATGGTATC
* * *
62397355 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTCACTATAAT
1 CGGGCTAAGTCCCGAAGACAATCGAGCGAGTCACTAT-AT
* *
62397395 CGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CGGGCTAAGTCCCGAAGACAATCGAGCGAGTCACTATAT
62397434 CGG
1 CGG
62397437 TTAAATCCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 5 0.14
40 32 0.86
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGACAATCGAGCGAGTCACTATAT
Found at i:62400497 original size:96 final size:97
Alignment explanation
Indices: 62400388--62400575 Score: 360
Period size: 96 Copynumber: 1.9 Consensus size: 97
62400378 GTATGAGATA
62400388 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
62400452 TAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 TAATGGCCGATGTGATGAATGTGAAAGTGTAT
62400484 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGC
62400549 CTAATGGCCGATGTGATGAATGTGAAA
65 CTAATGGCCGATGTGATGAATGTGAAA
62400576 TATATGTGTG
Statistics
Matches: 90, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
96 46 0.51
98 44 0.49
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (97 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:62400590 original size:49 final size:49
Alignment explanation
Indices: 62400388--62400575 Score: 362
Period size: 49 Copynumber: 3.9 Consensus size: 49
62400378 GTATGAGATA
62400388 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62400435 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62400484 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62400533 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
62400576 TATATGTGTG
Statistics
Matches: 139, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
47 46 0.33
49 93 0.67
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:62400608 original size:98 final size:98
Alignment explanation
Indices: 62400410--62400704 Score: 297
Period size: 98 Copynumber: 3.1 Consensus size: 98
62400400 AGGCCTAATG
62400410 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * *
62400473 TGAAAGTGTATATAT-ATGTG-ATAAG-GCCTAATG
66 TGAAA-TATATGTGTGATGTGTATATGTG-GTAA-A
62400506 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
62400571 TGAAATATATGTGTGATGTGTATATGTGGTAAA
66 TGAAATATATGTGTGATGTGTATATGTGGTAAA
* * * * * * * * * *
62400604 GCCGAAGGGCT-AATGTGAAACATATATAAGATATGTG-TATGTG-GTAA-AGCCGAATG-GCT-
1 GCCGATGTGATGAATGTGAAA-GTGTAT-ATATATGTGATAAG-GCCTAATGGCCG-ATGTGATG
*
62400663 AATGTGAAATATATGTGTGATATGTATATGTGGTAAA
62 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAA
62400700 GCCGA
1 GCCGA
62400705 ATGGCTAATG
Statistics
Matches: 173, Mismatches: 17, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
96 65 0.38
97 21 0.12
98 70 0.40
99 16 0.09
100 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (98 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAATATATGTGTGATGTGTATATGTGGTAAA
Found at i:62400645 original size:48 final size:48
Alignment explanation
Indices: 62400589--62400718 Score: 206
Period size: 48 Copynumber: 2.7 Consensus size: 48
62400579 ATGTGTGATG
*
62400589 TGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATAAGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
* * * **
62400637 TGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
62400685 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62400719 TGTTGTAATA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
Found at i:62400799 original size:37 final size:37
Alignment explanation
Indices: 62400758--62400884 Score: 220
Period size: 37 Copynumber: 3.4 Consensus size: 37
62400748 AACTTGGAAA
62400758 TATGTTCCGGGT-AGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
62400795 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
62400832 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
62400869 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
62400885 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
36 7 0.08
37 80 0.92
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:62405011 original size:83 final size:83
Alignment explanation
Indices: 62404917--62405070 Score: 308
Period size: 83 Copynumber: 1.9 Consensus size: 83
62404907 GCACATAAAC
62404917 AATCATTCTCAAATTCATTCATTCTTTGTATATTCTTTCATACCCCTCACAGGTCTCTAGATATC
1 AATCATTCTCAAATTCATTCATTCTTTGTATATTCTTTCATACCCCTCACAGGTCTCTAGATATC
62404982 AATGATTCATAGCACAAT
66 AATGATTCATAGCACAAT
62405000 AATCATTCTCAAATTCATTCATTCTTTGTATATTCTTTCATACCCCTCACAGGTCTCTAGATATC
1 AATCATTCTCAAATTCATTCATTCTTTGTATATTCTTTCATACCCCTCACAGGTCTCTAGATATC
62405065 AATGAT
66 AATGAT
62405071 ATGAGTGCTA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 71 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (83 bp):
AATCATTCTCAAATTCATTCATTCTTTGTATATTCTTTCATACCCCTCACAGGTCTCTAGATATC
AATGATTCATAGCACAAT
Found at i:62406463 original size:27 final size:29
Alignment explanation
Indices: 62406399--62406469 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
62406389 GTGACGAGAT
*
62406399 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
62406428 TGGCACTAAGTGTGCATGCTGG-AA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
62406455 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
62406470 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 18 0.44
28 2 0.05
29 21 0.51
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:62406497 original size:56 final size:56
Alignment explanation
Indices: 62406399--62406529 Score: 129
Period size: 56 Copynumber: 2.3 Consensus size: 56
62406389 GTGACGAGAT
* * * * *
62406399 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-A
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCA
* * ** * *
62406455 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAAT--CA
62406513 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
62406530 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
55 4 0.07
56 39 0.64
58 18 0.30
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (56 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCA
Found at i:62414301 original size:29 final size:29
Alignment explanation
Indices: 62414268--62414399 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
62414258 GTGACGAGAT
*
62414268 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
62414297 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
62414326 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
62414355 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
62414384 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62414400 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:62418315 original size:27 final size:27
Alignment explanation
Indices: 62418262--62418315 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
62418252 TTTTATTCAT
** * *
62418262 ATAACCTTTATTAATTCATTTACTAAA
1 ATAACCTTTATTAAAACATATAATAAA
62418289 ATAACCTTTATTAAAACATATAATAAA
1 ATAACCTTTATTAAAACATATAATAAA
62418316 CATATAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (27 bp):
ATAACCTTTATTAAAACATATAATAAA
Found at i:62423677 original size:48 final size:48
Alignment explanation
Indices: 62423614--62423883 Score: 258
Period size: 48 Copynumber: 5.8 Consensus size: 48
62423604 CACATGGTAA
* * *
62423614 GATGCCAATGCCATATCCCAGATATGGTTTTACATGGGATCACATATT
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
** **
62423662 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* ** * *
62423710 GATGCCAATGCCATGTGTCAGGCATGGTTTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
*
62423758 GATGCC---G--ATAGCCCAG-CTATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * ** *
62423801 GATGCC---G--ATAGCCCAG-CTATGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
62423844 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAT
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGAT
62423884 TGTACATAAC
Statistics
Matches: 185, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.01
43 74 0.40
45 1 0.01
46 1 0.01
48 107 0.58
49 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:62423786 original size:43 final size:43
Alignment explanation
Indices: 62423733--62423849 Score: 189
Period size: 43 Copynumber: 2.7 Consensus size: 43
62423723 TGTGTCAGGC
*
62423733 ATGGTTTTACATGGGATCACATATCGATGCCGATAGCCCAGCT
1 ATGGTCTTACATGGGATCACATATCGATGCCGATAGCCCAGCT
62423776 ATGGTCTTACATGGGATCACATATCGATGCCGATAGCCCAGCT
1 ATGGTCTTACATGGGATCACATATCGATGCCGATAGCCCAGCT
* ** *
62423819 ATGGTCTTACACGAAATTACATATCGATGCC
1 ATGGTCTTACATGGGATCACATATCGATGCC
62423850 AAAGCCATGT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACATGGGATCACATATCGATGCCGATAGCCCAGCT
Found at i:62431086 original size:29 final size:29
Alignment explanation
Indices: 62430995--62431126 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
62430985 TACTCGATTT
** * *
62430995 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
62431024 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
62431053 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
62431082 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
62431111 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62431127 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:62438814 original size:29 final size:28
Alignment explanation
Indices: 62438781--62438853 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
62438771 CCTTCGAGCT
62438781 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
*
62438810 TGCACACTTAGTGCCATATTTTCCAGCA
1 CGCACACTTAGTGCCATATTTTCCAGCA
62438838 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62438854 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:62438842 original size:28 final size:29
Alignment explanation
Indices: 62438723--62438853 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
62438713 TACTCGATTT
** * *
62438723 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
62438752 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
62438781 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
62438810 TGCACACTTAGTGCCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
62438838 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62438854 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 26 0.31
29 59 0.69
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:62442488 original size:48 final size:48
Alignment explanation
Indices: 62442413--62442560 Score: 179
Period size: 48 Copynumber: 3.1 Consensus size: 48
62442403 CACATGGGAG
* ** *
62442413 GATGCCAATGCCATATCCCGGAGATGGTCTTATATGGGATCACATATC
1 GATGCCAATGCCATGTCCCACACATGGTCTTATATGGGATCACATATC
* ** **
62442461 GATGCCAAAGCCATGTCCCACACATGGTCTTATATGGGATCGTAGGTC
1 GATGCCAATGCCATGTCCCACACATGGTCTTATATGGGATCACATATC
* * * *
62442509 GATGCCAATGTCATGTCCCATACATGGTCTTACATGGGATCACATTTC
1 GATGCCAATGCCATGTCCCACACATGGTCTTATATGGGATCACATATC
62442557 GATG
1 GATG
62442561 TCGATAGCCT
Statistics
Matches: 83, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCACACATGGTCTTATATGGGATCACATATC
Found at i:62446871 original size:88 final size:87
Alignment explanation
Indices: 62446741--62446901 Score: 295
Period size: 88 Copynumber: 1.8 Consensus size: 87
62446731 AAAATTGTAC
62446741 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
62446806 AGTGTGCGAACTGAAAATATAT
66 AGTGTGCGAACTGAAAATATAT
* *
62446828 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
62446893 AAGTGTGCG
65 AAGTGTGCG
62446902 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
87 23 0.32
88 48 0.68
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (87 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
AGTGTGCGAACTGAAAATATAT
Found at i:62446913 original size:29 final size:29
Alignment explanation
Indices: 62446741--62446901 Score: 295
Period size: 29 Copynumber: 5.5 Consensus size: 29
62446731 AAAATTGTAC
62446741 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
62446770 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
62446799 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
62446828 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
62446858 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
62446887 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
62446902 GATTCACTAT
Statistics
Matches: 130, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
29 101 0.78
30 29 0.22
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:62455595 original size:39 final size:39
Alignment explanation
Indices: 62455495--62455605 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
62455485 TCGAATGATG
* *
62455495 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTGACCAAA
* **
62455535 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTGACCAAA
*
62455575 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAG
62455606 CTATTATAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 20 0.32
40 34 0.55
41 8 0.13
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:62455619 original size:39 final size:39
Alignment explanation
Indices: 62455495--62455645 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
62455485 TCGAATGATG
* *
62455495 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
62455535 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGCTACCAAA
* **
62455575 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
62455615 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAG
62455646 TCGCTATATC
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 31 0.34
40 52 0.57
41 9 0.10
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:62463339 original size:18 final size:20
Alignment explanation
Indices: 62463318--62463358 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
62463308 GAAATATTTA
*
62463318 TTTTGATGT-TTTTA-ATAT
1 TTTTGATGTATTGTATATAT
62463336 TTTTGATGTATTGTATATAT
1 TTTTGATGTATTGTATATAT
62463356 TTT
1 TTT
62463359 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (20 bp):
TTTTGATGTATTGTATATAT
Found at i:62469104 original size:25 final size:25
Alignment explanation
Indices: 62469073--62469122 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
62469063 TAGTGCAAAG
62469073 AATTATTTGTTTCTAACATTTCCAA
1 AATTATTTGTTTCTAACATTTCCAA
62469098 AATTATTTGTTTCTAACATTTCCAA
1 AATTATTTGTTTCTAACATTTCCAA
62469123 GTCAAGGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.48
Consensus pattern (25 bp):
AATTATTTGTTTCTAACATTTCCAA
Found at i:62475928 original size:2 final size:2
Alignment explanation
Indices: 62475921--62475946 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
62475911 CCAAAATGAC
62475921 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
62475947 CAAACTCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62479196 original size:45 final size:45
Alignment explanation
Indices: 62479118--62479218 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
62479108 ATCTGTATTA
* ** * * * *
62479118 TTTTGTTGTGTACCAATAACTATAGGTAGATTCCATTTACAGTGT
1 TTTTGTTGTGTACCAATAACCATAGACAAATTCCATCTACAATAT
* *
62479163 TTTTGTTGTGTACCCATAACCATAGACAAATTCCATCTGCAATAT
1 TTTTGTTGTGTACCAATAACCATAGACAAATTCCATCTACAATAT
62479208 TTTTGTTGTGT
1 TTTTGTTGTGT
62479219 GTCCATAGCC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.43
Consensus pattern (45 bp):
TTTTGTTGTGTACCAATAACCATAGACAAATTCCATCTACAATAT
Found at i:62482464 original size:26 final size:27
Alignment explanation
Indices: 62482431--62482525 Score: 95
Period size: 26 Copynumber: 3.6 Consensus size: 27
62482421 GGAAAAAAAA
*
62482431 TAAAATAAATAATATGTAAAAT-AATT
1 TAAAATAAATAATATGTAAAATGAACT
* * *
62482457 TAAGATAAATAATATAT-AAATGAGCT
1 TAAAATAAATAATATGTAAAATGAACT
* * *
62482483 TAAAATAAATATTATGTAAAAAGAAATT
1 TAAAATAAATAATATGTAAAATG-AACT
*
62482511 TAAAATAAGTAATAT
1 TAAAATAAATAATAT
62482526 ACAAAACATC
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
25 4 0.07
26 31 0.57
27 4 0.07
28 15 0.28
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.33
Consensus pattern (27 bp):
TAAAATAAATAATATGTAAAATGAACT
Found at i:62482539 original size:54 final size:52
Alignment explanation
Indices: 62482431--62482541 Score: 132
Period size: 54 Copynumber: 2.1 Consensus size: 52
62482421 GGAAAAAAAA
* * * **
62482431 TAAAATAAATAATATGTAAAATAATTTAAGATAAATAATATATAAATGAGCT
1 TAAAATAAATAATATGTAAAAAAATTTAAAATAAATAATATACAAAACAGCT
* * *
62482483 TAAAATAAATATTATGTAAAAAGAAATTTAAAATAAGTAATATACAAAACATCT
1 TAAAATAAATAATATGT-AAAA-AAATTTAAAATAAATAATATACAAAACAGCT
62482537 TAAAA
1 TAAAA
62482542 AATAAATGGT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
52 16 0.33
53 4 0.08
54 29 0.59
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (52 bp):
TAAAATAAATAATATGTAAAAAAATTTAAAATAAATAATATACAAAACAGCT
Found at i:62482654 original size:26 final size:25
Alignment explanation
Indices: 62482558--62482765 Score: 126
Period size: 26 Copynumber: 8.3 Consensus size: 25
62482548 TGGTATATAA
62482558 AAAATAGATAATACATATAAA-AATTT
1 AAAATA-ATAATACATA-AAATAATTT
* * * * *
62482584 GAAATTGATAATATATGAAAAAAAATT
1 -AAAATAATAATACAT-AAAATAATTT
*
62482611 AAAGT-A-AATA-ATAAAATAATTT
1 AAAATAATAATACATAAAATAATTT
62482633 AAAATGAATAATACATAAAATAAGTTT
1 AAAAT-AATAATACATAAAATAA-TTT
* **
62482660 AAAATAAATAATGCATAAAGCAATTT
1 AAAAT-AATAATACATAAAATAATTT
* * *
62482686 AAAGTATATAGTATATAAAATAATTT
1 AAAATA-ATAATACATAAAATAATTT
*
62482712 AAAATAAT-ATATC-TAAAAAAATTT
1 AAAATAATAATA-CATAAAATAATTT
* * * *
62482736 AAAACAGT-TTA-ATAAAACAATTT
1 AAAATAATAATACATAAAATAATTT
62482759 AAAATAA
1 AAAATAA
62482766 AAAAAAAATC
Statistics
Matches: 143, Mismatches: 28, Indels: 24
0.73 0.14 0.12
Matches are distributed among these distances:
22 12 0.08
23 17 0.12
24 25 0.17
25 8 0.06
26 50 0.35
27 31 0.22
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (25 bp):
AAAATAATAATACATAAAATAATTT
Found at i:62485397 original size:52 final size:53
Alignment explanation
Indices: 62485319--62485429 Score: 188
Period size: 52 Copynumber: 2.1 Consensus size: 53
62485309 ATCTCATGCC
62485319 TGCATCCAATATATATTGCTTAGGTTGACCAATTAACTCT-TTCATATATAGT
1 TGCATCCAATATATATTGCTTAGGTTGACCAATTAACTCTATTCATATATAGT
* *
62485371 TGCATCCAATATATATTGTTTAGGTTGACCAATTAACTCTGATTCCTATATAGT
1 TGCATCCAATATATATTGCTTAGGTTGACCAATTAACTCT-ATTCATATATAGT
62485425 TGCAT
1 TGCAT
62485430 ATGTCAAGTT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
52 39 0.71
54 16 0.29
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.41
Consensus pattern (53 bp):
TGCATCCAATATATATTGCTTAGGTTGACCAATTAACTCTATTCATATATAGT
Found at i:62487336 original size:21 final size:21
Alignment explanation
Indices: 62487300--62487356 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
62487290 CAAAAAATAT
62487300 ATATAAATACATAAATTCAAAAA
1 ATAT-AATA-ATAAATTCAAAAA
* *
62487323 ATATAATAATAAATTTAAAAT
1 ATATAATAATAAATTCAAAAA
*
62487344 ATATAAAAATAAA
1 ATATAATAATAAA
62487357 AATATCGTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 23 0.74
22 4 0.13
23 4 0.13
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (21 bp):
ATATAATAATAAATTCAAAAA
Found at i:62495311 original size:40 final size:39
Alignment explanation
Indices: 62495266--62495473 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
62495256 CGGAATACAA
*
62495266 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62495306 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
62495346 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
62495386 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
62495426 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
62495466 CCGGATAT
1 CCGGATAT
62495474 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:62495406 original size:80 final size:81
Alignment explanation
Indices: 62495266--62495471 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
62495256 CGGAATACAA
* * *
62495266 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
62495330 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
62495346 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
62495409 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
62495426 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
62495472 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:62507898 original size:38 final size:38
Alignment explanation
Indices: 62507850--62508055 Score: 189
Period size: 38 Copynumber: 5.4 Consensus size: 38
62507840 TAATCCAATG
* * *
62507850 GAAACACCAAATAGAAGCTCATAATAGCTGATCTAATC
1 GAAACGCCAAATAGAAGCTCATAATAGCTGATCCAACC
* * * * *
62507888 GAATCGCCAAACAAAAGATCATAATAGTTGATCCAACC
1 GAAACGCCAAATAGAAGCTCATAATAGCTGATCCAACC
* ** * * *
62507926 AAAACATCAAGTAGAAGCTCATGATAGCTGATCAAACC
1 GAAACGCCAAATAGAAGCTCATAATAGCTGATCCAACC
* * *
62507964 GAAACGCC-AATCAGAAGCTCATAAGAGCTGATCGAACT
1 GAAACGCCAAAT-AGAAGCTCATAATAGCTGATCCAACC
* * * * *
62508002 GAAATGCCAAACAAAAGCTCATAAGAGCTGATCCAATC
1 GAAACGCCAAATAGAAGCTCATAATAGCTGATCCAACC
*
62508040 GAAACACCAAATAGAA
1 GAAACGCCAAATAGAA
62508056 AGTATAACAC
Statistics
Matches: 129, Mismatches: 37, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
37 2 0.02
38 125 0.97
39 2 0.02
ACGTcount: A:0.45, C:0.22, G:0.16, T:0.17
Consensus pattern (38 bp):
GAAACGCCAAATAGAAGCTCATAATAGCTGATCCAACC
Found at i:62514369 original size:46 final size:46
Alignment explanation
Indices: 62514316--62514528 Score: 184
Period size: 46 Copynumber: 4.6 Consensus size: 46
62514306 AGAATTGTGT
* ** *
62514316 GCCAGTGTAAGACATGTCTAGGACATGCATTGGCCACATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
* * *
62514362 GCCAGTGTAAGACCATGTTTGGGACATGGGATTAG---CATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATT-ATGA-GA
* *
62514408 GGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
* * ** **
62514456 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
*
62514502 GCCAGTGTCAG-CTATGTCTGGGACATG
1 GCCAGTGTAAGAC-ATGTCTGGGACATG
62514529 TGTCGGCTAC
Statistics
Matches: 138, Mismatches: 18, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
45 7 0.05
46 82 0.59
47 25 0.18
48 19 0.14
49 5 0.04
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
Found at i:62514568 original size:44 final size:46
Alignment explanation
Indices: 62514515--62514618 Score: 142
Period size: 44 Copynumber: 2.3 Consensus size: 46
62514505 AGTGTCAGCT
*
62514515 ATGTCTGGGACATGTGTCGGCTACGG-GACATG-CT-AGTGTAAGAC
1 ATGTCTGGGACATGTATCGG-TACGGTGACATGTCTCAGTGTAAGAC
* *
62514559 ATGTCTGGGACATGTATCGGTACGGTTACATGTGTCAGTGTAAGAC
1 ATGTCTGGGACATGTATCGGTACGGTGACATGTCTCAGTGTAAGAC
*
62514605 CTGTCTGGGACATG
1 ATGTCTGGGACATG
62514619 GTTTCGACAC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
43 5 0.09
44 24 0.45
45 1 0.02
46 23 0.43
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (46 bp):
ATGTCTGGGACATGTATCGGTACGGTGACATGTCTCAGTGTAAGAC
Done.