Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 217 of 345
Found at i:62925098 original size:11 final size:11
Alignment explanation
Indices: 62925062--62925116 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
62925052 CATGATATGT
62925062 ATGATATGCAC
1 ATGATATGCAC
* *
62925073 ATGACATG--T
1 ATGATATGCAC
62925082 ATGATATGCAC
1 ATGATATGCAC
*
62925093 ATGATATG--T
1 ATGATATGCAC
62925102 ATGATATGCAC
1 ATGATATGCAC
62925113 ATGA
1 ATGA
62925117 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:62925223 original size:24 final size:24
Alignment explanation
Indices: 62925166--62925379 Score: 310
Period size: 24 Copynumber: 9.0 Consensus size: 24
62925156 GGATGAAGTG
62925166 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
62925190 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
62925213 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
62925237 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
62925261 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
62925285 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
62925308 -TAAAGGGCTCATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
62925331 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
62925355 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
62925380 ATGATAAAGC
Statistics
Matches: 177, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
23 66 0.37
24 100 0.56
25 11 0.06
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:62925235 original size:47 final size:47
Alignment explanation
Indices: 62925166--62925379 Score: 324
Period size: 47 Copynumber: 4.5 Consensus size: 47
62925156 GGATGAAGTG
62925166 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
62925213 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
62925261 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
62925308 -TAAAGGGCTCATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
* *
62925355 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
62925380 ATGATAAAGC
Statistics
Matches: 154, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
46 22 0.14
47 67 0.44
48 54 0.35
49 11 0.07
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:62925636 original size:31 final size:31
Alignment explanation
Indices: 62925573--62925636 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
62925563 CGTTTACAGT
* * *
62925573 AAAGGCTTTGGCCCAGTAATATGAAACCTGA
1 AAAGGCTTCGACCCAGTAATATGAAACATGA
** *
62925604 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAACATGA
62925635 AA
1 AA
62925637 TATGAAAAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAACATGA
Found at i:62929200 original size:41 final size:41
Alignment explanation
Indices: 62929155--62929272 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
62929145 TGAAAGATAA
62929155 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
62929196 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
62929226 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
62929267 ATGTAG
1 ATGTAG
62929273 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:62929211 original size:71 final size:71
Alignment explanation
Indices: 62929123--62929286 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62929113 GAGATGTATC
62929123 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
62929188 AGGACA
66 AGGACA
62929194 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
62929259 AGGACA
66 AGGACA
62929265 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
62929287 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:62934649 original size:41 final size:41
Alignment explanation
Indices: 62934604--62934721 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
62934594 TGAAAGATAA
62934604 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
62934645 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
62934675 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
62934716 ATGTAG
1 ATGTAG
62934722 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:62934660 original size:71 final size:71
Alignment explanation
Indices: 62934572--62934735 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62934562 GAGATGTATC
62934572 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
62934637 AGGACA
66 AGGACA
62934643 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
62934708 AGGACA
66 AGGACA
62934714 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
62934736 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:62942941 original size:40 final size:40
Alignment explanation
Indices: 62942897--62943111 Score: 261
Period size: 40 Copynumber: 5.3 Consensus size: 40
62942887 GATTGTCTTT
* * * * *
62942897 GGGACATAGCCCGGTTATAGTAATTCGCA-AAATTGCCTTC
1 GGGACTTAACCCGGTTTTGGTAACTCGCACAAA-TGCCTTC
62942937 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
1 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
62942977 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
1 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
* *
62943017 GGGACTTAACTCGATTTTGGTAACTCGCACAAATGCCTTC
1 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
* * * * * * * *
62943057 GGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTCC
1 GGGACTTAACCCGGTTTTGGTAAC-TCGCACAAATGCCTTC
*
62943098 GGGACTTAGCCCGG
1 GGGACTTAACCCGG
62943112 ATACCATTCG
Statistics
Matches: 153, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 126 0.82
41 27 0.18
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
Found at i:62944945 original size:49 final size:49
Alignment explanation
Indices: 62944892--62945499 Score: 882
Period size: 49 Copynumber: 12.7 Consensus size: 49
62944882 GATTTTACGC
* * * * *
62944892 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
* *
62944941 GATGAATGTGAAAGTG--TATATATGTGATAAGGTCTATTGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
**
62944988 GATGAATGTGAAAGTGTATATATATGTGATAAGGTATAATGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
*
62945037 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
* *
62945086 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
*
62945135 GATGAATGTGAAAGTG--TATATATGTGATAAGGTCTAATGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
62945182 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
*
62945231 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
* * *
62945280 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA-GGGCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
* *
62945328 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
* * *
62945375 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
* * * *
62945422 GATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
*
62945469 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAG
62945500 TCCCGAAGGG
Statistics
Matches: 520, Mismatches: 28, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
45 1 0.00
46 24 0.05
47 194 0.37
48 27 0.05
49 274 0.53
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.29
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
Found at i:62945003 original size:15 final size:16
Alignment explanation
Indices: 62944983--62945055 Score: 57
Period size: 15 Copynumber: 4.6 Consensus size: 16
62944973 TCTATTGGCC
62944983 AAAGTG-ATGAATGTG
1 AAAGTGTATGAATGTG
*
62944998 AAAGTGTATATATATGTG
1 AAAGTGTAT-GA-ATGTG
62945016 ATAAG-GTAT-AATG-G
1 A-AAGTGTATGAATGTG
62945030 CCAAAGTG-ATGAATGTG
1 --AAAGTGTATGAATGTG
62945047 AAAGTGTAT
1 AAAGTGTAT
62945056 ATATATGTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 19
0.70 0.01 0.28
Matches are distributed among these distances:
14 1 0.02
15 20 0.43
16 11 0.23
17 2 0.04
18 10 0.21
19 3 0.06
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.30
Consensus pattern (16 bp):
AAAGTGTATGAATGTG
Found at i:62945016 original size:18 final size:18
Alignment explanation
Indices: 62944993--62945065 Score: 59
Period size: 18 Copynumber: 4.3 Consensus size: 18
62944983 AAAGTGATGA
62944993 ATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATAT
62945011 ATGTGATAAG-GTATA-AT
1 ATGTGA-AAGTGTATATAT
* ** *
62945028 -GGCCAAAGTG-AT-GA-
1 ATGTGAAAGTGTATATAT
62945042 ATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATAT
62945060 ATGTGA
1 ATGTGA
62945066 TAAGGCCTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
15 13 0.32
16 5 0.12
17 3 0.07
18 17 0.41
19 3 0.07
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.33
Consensus pattern (18 bp):
ATGTGAAAGTGTATATAT
Found at i:62945159 original size:16 final size:15
Alignment explanation
Indices: 62945139--62945201 Score: 51
Period size: 16 Copynumber: 4.1 Consensus size: 15
62945129 CGATGTGATG
62945139 AATGTGAAAGTGTAT
1 AATGTGAAAGTGTAT
*
62945154 ATATGTGATAAG-GTCT
1 A-ATGTGA-AAGTGTAT
62945170 AATG-GCCAAAGTG-AT
1 AATGTG--AAAGTGTAT
62945185 GAATGTGAAAGTGTAT
1 -AATGTGAAAGTGTAT
62945201 A
1 A
62945202 TATATGTGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
14 1 0.03
15 15 0.39
16 18 0.47
17 4 0.11
ACGTcount: A:0.38, C:0.05, G:0.27, T:0.30
Consensus pattern (15 bp):
AATGTGAAAGTGTAT
Found at i:62945178 original size:194 final size:194
Alignment explanation
Indices: 62944892--62945499 Score: 998
Period size: 194 Copynumber: 3.2 Consensus size: 194
62944882 GATTTTACGC
* * *
62944892 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
62944957 TATATATGTGATAAGGTCTATTGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
66 TATATATGTGATAAGGTCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
**
62945022 TATAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
131 CCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
62945086 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62945151 TATATATGTGATAAGGTCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
66 TATATATGTGATAAGGTCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
62945216 CCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
131 CCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
*
62945280 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA-GGGCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
62945344 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGATAAGG
66 TATATATGTGATAAGGTCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
* * * * *
62945407 CCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCC-AACGT
131 CCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAA-GT
*
62945469 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAG
62945500 TCCCGAAGGG
Statistics
Matches: 396, Mismatches: 17, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
187 10 0.03
188 3 0.01
189 44 0.11
191 47 0.12
192 3 0.01
193 62 0.16
194 227 0.57
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.29
Consensus pattern (194 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGTCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
CCTAATGGCCAAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
Found at i:62947666 original size:40 final size:40
Alignment explanation
Indices: 62947622--62947893 Score: 483
Period size: 40 Copynumber: 6.8 Consensus size: 40
62947612 GAGAATTGAG
62947622 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62947662 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62947702 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62947742 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
62947782 AGTAATGCATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62947822 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
62947862 AGTGATGTATCCCGG-CTAGGTCCCGAAGAGCA
1 AGTGATGTAT-CCGGACTAAGTTCCGAAGAGCA
62947894 ATCATGCTGG
Statistics
Matches: 225, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
40 221 0.98
41 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:62951358 original size:49 final size:49
Alignment explanation
Indices: 62951305--62951866 Score: 860
Period size: 49 Copynumber: 11.7 Consensus size: 49
62951295 GATTTTACGC
* * * *
62951305 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
* *
62951354 GATGAATGTGAAAGTG--TATATATGTGATAAGGTCTAATGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
*
62951401 GATGAATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
62951450 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
62951499 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
* *
62951548 GATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
*
62951597 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
62951646 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
* *
62951695 GATGAATGTGAAAGTG--TATATGTGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
* *
62951742 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCC-AATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAA-GT
* * *
62951789 GATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCC-AACGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAA-GT
*
62951836 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAG
62951867 TCCCGAAGGG
Statistics
Matches: 482, Mismatches: 22, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
45 1 0.00
46 4 0.01
47 169 0.35
48 4 0.01
49 304 0.63
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
Found at i:62951378 original size:16 final size:15
Alignment explanation
Indices: 62951358--62951420 Score: 51
Period size: 16 Copynumber: 4.1 Consensus size: 15
62951348 CGATGTGATG
62951358 AATGTGAAAGTGTAT
1 AATGTGAAAGTGTAT
*
62951373 ATATGTGATAAG-GTCT
1 A-ATGTGA-AAGTGTAT
62951389 AATG-GCCAAAGTG-AT
1 AATGTG--AAAGTGTAT
62951404 GAATGTGAAAGTGTAT
1 -AATGTGAAAGTGTAT
62951420 A
1 A
62951421 TATATGTGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
14 1 0.03
15 15 0.39
16 18 0.47
17 4 0.11
ACGTcount: A:0.38, C:0.05, G:0.27, T:0.30
Consensus pattern (15 bp):
AATGTGAAAGTGTAT
Found at i:62956911 original size:9 final size:10
Alignment explanation
Indices: 62956899--62956955 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
62956889 TACGTGGGAT
62956899 ATGATAT-AC
1 ATGATATGAC
*
62956908 ATGAT-TGAT
1 ATGATATGAC
62956917 ATGATATGCAC
1 ATGATATG-AC
*
62956928 ATGATATG-T
1 ATGATATGAC
62956937 ATGATATGCAC
1 ATGATATG-AC
62956948 ATGATATG
1 ATGATATG
62956956 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:62956931 original size:20 final size:20
Alignment explanation
Indices: 62956898--62956972 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
62956888 ATACGTGGGA
62956898 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
62956915 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
62956936 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
62956956 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
62956973 GTATTCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:62956933 original size:11 final size:11
Alignment explanation
Indices: 62956917--62956972 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
62956907 CATGATTGAT
62956917 ATGATATGCAC
1 ATGATATGCAC
*
62956928 ATGATATG--T
1 ATGATATGCAC
62956937 ATGATATGCAC
1 ATGATATGCAC
*
62956948 ATGATATG--T
1 ATGATATGCAC
*
62956957 ATGAAATGCAC
1 ATGATATGCAC
62956968 ATGAT
1 ATGAT
62956973 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:62957100 original size:52 final size:51
Alignment explanation
Indices: 62957022--62957157 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 51
62957012 GAGGAAGTGC
* *
62957022 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
62957074 AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
62957125 AAAAGGGCTT-TGCCCC-AGTTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAATTTATTGAAAAG-GGCT
62957158 AGGCCTCCAG
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
48 5 0.06
49 10 0.12
50 6 0.08
51 25 0.31
52 34 0.43
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:62957121 original size:25 final size:26
Alignment explanation
Indices: 62957022--62957157 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
62957012 GAGGAAGTGC
*
62957022 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
62957048 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
62957074 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
62957100 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62957125 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
62957148 AAAAGAGGCT
1 AAAAG-GGCT
62957158 AGGCCTCCAG
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 30 0.31
26 56 0.57
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:62966701 original size:53 final size:54
Alignment explanation
Indices: 62966617--62966823 Score: 175
Period size: 53 Copynumber: 3.8 Consensus size: 54
62966607 TTCCTTTTTA
* * * *
62966617 AACTTACCATTGCTATGTCTTGACATAGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
62966670 AACTCACCATTGCCATGCCTT-AGCATGGTCTTACATGGGATCTTTACCTTATCG
1 AACTTACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * * *
62966724 TAGTTTATCAATGCCATGTCATGACATGGTCTTATATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
62966779 AACTTACCAATGCCATACCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
62966824 AAACCCTAAT
Statistics
Matches: 116, Mismatches: 34, Indels: 7
0.74 0.22 0.04
Matches are distributed among these distances:
52 1 0.01
53 43 0.37
54 35 0.30
55 36 0.31
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:62973520 original size:43 final size:44
Alignment explanation
Indices: 62973467--62973570 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 44
62973457 TTCGATGAAC
* * *
62973467 TCGCATACTTAGTGCCAATTGATT-AGCCGAAGC-TATAGT-AATA
1 TCGCACACTTAGTGCCAATTCATTAAACCGAA-CTTATA-TCAATA
* *
62973510 TCGCACACTTAGTGCCATTTCATTAAACCGAACTTATATCAGTA
1 TCGCACACTTAGTGCCAATTCATTAAACCGAACTTATATCAATA
*
62973554 TCGCACACATAGTGCCA
1 TCGCACACTTAGTGCCA
62973571 TTTATTCAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
43 23 0.44
44 29 0.56
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (44 bp):
TCGCACACTTAGTGCCAATTCATTAAACCGAACTTATATCAATA
Found at i:62978295 original size:51 final size:51
Alignment explanation
Indices: 62978240--62978344 Score: 129
Period size: 51 Copynumber: 2.1 Consensus size: 51
62978230 CGCATGTATA
* * *** *
62978240 GTACTAGGTGCAGGCTACTATGCGTGCTAGATAGCTTCGATCACATGTGTG
1 GTACTAAGTGCAGGCCACTATGCGTAAAAGATAGCTTCGATCACAAGTGTG
* * *
62978291 GTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTGGGTCACAAGTGTG
1 GTACTAAGTGCAGGCCACTATGCGTAAAAGATAGCTTCGATCACAAGTGTG
62978342 GTA
1 GTA
62978345 GCTTGGGTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (51 bp):
GTACTAAGTGCAGGCCACTATGCGTAAAAGATAGCTTCGATCACAAGTGTG
Found at i:62978348 original size:21 final size:21
Alignment explanation
Indices: 62978322--62978365 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
62978312 GTGTAAAAGA
62978322 TAGCTTGGGTCACAAGTGTGG
1 TAGCTTGGGTCACAAGTGTGG
62978343 TAGCTTGGGTCACAAGTGTGG
1 TAGCTTGGGTCACAAGTGTGG
62978364 TA
1 TA
62978366 CTATATGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.14, G:0.36, T:0.30
Consensus pattern (21 bp):
TAGCTTGGGTCACAAGTGTGG
Found at i:62983712 original size:27 final size:26
Alignment explanation
Indices: 62983664--62983723 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
62983654 ACGAGGCTGC
*
62983664 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
62983691 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
62983717 CAGATAT
1 CAGATAT
62983724 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62984205 original size:18 final size:18
Alignment explanation
Indices: 62984182--62984225 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
62984172 TAACAACTGT
62984182 CTCACGAGCACTCGCACG
1 CTCACGAGCACTCGCACG
62984200 CTCACGAGCACTCGCACG
1 CTCACGAGCACTCGCACG
62984218 CTCACGAG
1 CTCACGAG
62984226 TTCACAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.23, C:0.43, G:0.23, T:0.11
Consensus pattern (18 bp):
CTCACGAGCACTCGCACG
Found at i:62985643 original size:28 final size:28
Alignment explanation
Indices: 62985603--62985670 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
62985593 GCAATCAAAT
62985603 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
62985631 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
**
62985659 ATGAAACTTAGT
1 ATGGCACTTAGT
62985671 TTGCAAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:62985681 original size:28 final size:28
Alignment explanation
Indices: 62985608--62985681 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
62985598 CAAATATGGC
* * **
62985608 ACTTAGTGTACGAAATATTGAGAATGGC
1 ACTTAGTGTGCAAAATATTGAGAATGAA
* *
62985636 ACTTAGTGTGCGAGATATTGAGAATGAA
1 ACTTAGTGTGCAAAATATTGAGAATGAA
*
62985664 ACTTAGTTTGCAAAATAT
1 ACTTAGTGTGCAAAATAT
62985682 CGAATGATTT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.31
Consensus pattern (28 bp):
ACTTAGTGTGCAAAATATTGAGAATGAA
Found at i:62988884 original size:2 final size:2
Alignment explanation
Indices: 62988877--62988913 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
62988867 TAAGTGCCTT
62988877 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62988914 TCGAATGGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:63001875 original size:50 final size:49
Alignment explanation
Indices: 63001761--63001988 Score: 246
Period size: 50 Copynumber: 4.6 Consensus size: 49
63001751 TATACGCATT
* * * *
63001761 GTAGCCTGCACTTAGTACTACACATGCGA-TCAACAATCCGGTACACGTA
1 GTAGCCTGCACTTAGTACTACACACGTGACTCAAC-ATCTGATACACGTA
*
63001810 GTAGCCTGCACTTAGTACTACACACGTGACCTCATCATCTGATACACGTA
1 GTAGCCTGCACTTAGTACTACACACGTGA-CTCAACATCTGATACACGTA
** *
63001860 GTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTCAT-TGAGTATGCATA
1 GTAGCCTGCACTTAGTACTACACACGTGACTC-AA--CATCTGA-TACACGTA
* * * *
63001911 GTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGATACACGTA
1 GTAGCCTGCACTTAGTACTACACACGTGACTCAACA-TCTGATACACGTA
* *
63001961 GTAGCCTACACATAGTACTACACACGTG
1 GTAGCCTGCACTTAGTACTACACACGTG
63001989 TATTCACAAT
Statistics
Matches: 151, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
48 2 0.01
49 30 0.20
50 74 0.49
51 44 0.29
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
GTAGCCTGCACTTAGTACTACACACGTGACTCAACATCTGATACACGTA
Found at i:63003867 original size:27 final size:27
Alignment explanation
Indices: 63003493--63003858 Score: 405
Period size: 27 Copynumber: 13.6 Consensus size: 27
63003483 GTACTCCCGG
**
63003493 TTTACAGAATTACCGTTTTACCCTC-A
1 TTTACAGAATTACTATTTTACCCTCGA
*
63003519 GTTTATAGAATTACTATTTTACCCTCGA
1 -TTTACAGAATTACTATTTTACCCTCGA
** * *
63003547 TTTGTAAAATTACTGTTTTACCCTCGA
1 TTTACAGAATTACTATTTTACCCTCGA
** * **
63003574 TTTGTAAAATTACCGTTTTACCCTCGA
1 TTTACAGAATTACTATTTTACCCTCGA
* *
63003601 TTTATAGAATTACCATTTTACCCTCGA
1 TTTACAGAATTACTATTTTACCCTCGA
** * **
63003628 TTTGTAAAATTACCGTTTTACCCTCGA
1 TTTACAGAATTACTATTTTACCCTCGA
*
63003655 TTTACAGAATTACTGTTTTACCCTC-A
1 TTTACAGAATTACTATTTTACCCTCGA
*
63003681 GTTTACAGAATTACTATTTTACCCTCAA
1 -TTTACAGAATTACTATTTTACCCTCGA
**
63003709 TTTACAGAATTACCGTTTTACCCTC-A
1 TTTACAGAATTACTATTTTACCCTCGA
* * *
63003735 GTTTACAGAATTATTGTTTTACCCTTGA
1 -TTTACAGAATTACTATTTTACCCTCGA
63003763 TTTACAGAATTACTATTTTACCCTCGA
1 TTTACAGAATTACTATTTTACCCTCGA
* * *
63003790 TTTATAGAATTACTGTTTTACCCTTGA
1 TTTACAGAATTACTATTTTACCCTCGA
*
63003817 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAGAATTACTATTTTACCCTCGA
*
63003844 TTTACAAAATTACTA
1 TTTACAGAATTACTA
63003859 AAATACCCTT
Statistics
Matches: 301, Mismatches: 33, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 296 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TTTACAGAATTACTATTTTACCCTCGA
Found at i:63003869 original size:54 final size:54
Alignment explanation
Indices: 63003493--63003857 Score: 457
Period size: 54 Copynumber: 6.8 Consensus size: 54
63003483 GTACTCCCGG
* *
63003493 TTTACAGAATTACCGTTTTACCCTC-AGTTTATAGAATTACTATTTTACCCTCGA
1 TTTACAGAATTACTGTTTTACCCTCGA-TTTATAGAATTACTGTTTTACCCTCGA
** * * * *
63003547 TTTGTAAAATTACTGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGA
1 TTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGA
* ** * * *
63003601 TTTATAGAATTACCATTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGA
1 TTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGA
* * *
63003655 TTTACAGAATTACTGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCAA
1 TTTACAGAATTACTGTTTTACCCTCGA-TTTATAGAATTACTGTTTTACCCTCGA
* * * *
63003709 TTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTATTGTTTTACCCTTGA
1 TTTACAGAATTACTGTTTTACCCTCGA-TTTATAGAATTACTGTTTTACCCTCGA
* *
63003763 TTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGA
1 TTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGA
* *
63003817 TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACT
1 TTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACT
63003858 AAAATACCCT
Statistics
Matches: 275, Mismatches: 33, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
53 1 0.00
54 272 0.99
55 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (54 bp):
TTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGA
Found at i:63003894 original size:81 final size:81
Alignment explanation
Indices: 63003493--63003885 Score: 504
Period size: 81 Copynumber: 4.9 Consensus size: 81
63003483 GTACTCCCGG
* *
63003493 TTTACAGAATTACCGTTTTACCCTC-AGTTTATAGAATTACTATTTTACCCTCGATTTGTAAAAT
1 TTTACAGAATTACTGTTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCGATTTGTAAAAT
*
63003557 TACTGTTTTACCCTCGA
65 TACCGTTTTACCCTCGA
** * * * *
63003574 TTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTGTAAAATT
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTGTAAAATT
63003639 ACCGTTTTACCCTCGA
66 ACCGTTTTACCCTCGA
* ** *
63003655 TTTACAGAATTACTGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCAATTTACAGAAT
1 TTTACAGAATTACTGTTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCGATTTGTAAAAT
63003719 TACCGTTTTACCCTC-A
65 TACCGTTTTACCCTCGA
* * * *
63003735 GTTTACAGAATTATTGTTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTATAGAAT
1 -TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTGTAAAAT
* *
63003800 TACTGTTTTACCCTTGA
65 TACCGTTTTACCCTCGA
* *** * * *
63003817 TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTGAAATT
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTGTAAAATT
63003882 ACCG
66 ACCG
63003886 CAATACCCTC
Statistics
Matches: 274, Mismatches: 33, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
80 2 0.01
81 269 0.98
82 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (81 bp):
TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTGTAAAATT
ACCGTTTTACCCTCGA
Found at i:63005246 original size:20 final size:20
Alignment explanation
Indices: 63005186--63005246 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
63005176 ATAAATATGG
*
63005186 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
63005206 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
63005226 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
63005246 T
1 T
63005247 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:63005323 original size:24 final size:24
Alignment explanation
Indices: 63005296--63005438 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
63005286 GAGGAAGTGA
63005296 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
63005320 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
63005344 AAAACGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
63005367 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
63005391 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
63005415 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63005439 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 22 0.20
24 76 0.70
25 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:63005384 original size:47 final size:47
Alignment explanation
Indices: 63005296--63005438 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
63005286 GAGGAAGTGA
63005296 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
* *
63005344 AAAACGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
63005391 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
63005439 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 42 0.49
48 33 0.38
49 11 0.13
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:63005665 original size:31 final size:31
Alignment explanation
Indices: 63005630--63005693 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
63005620 CGTTTACAGT
63005630 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
63005661 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63005692 AA
1 AA
63005694 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63014870 original size:216 final size:216
Alignment explanation
Indices: 63014489--63015111 Score: 1140
Period size: 216 Copynumber: 2.9 Consensus size: 216
63014479 GGTTGTCACA
* ** *
63014489 GCTTATCTCACAAGGTCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCATGGGAA
1 GCTTATCTCGCAACATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
* **
63014554 TAGATCAAAATGTCATCTATAAACACAACCACAAACTGGTCCAGATACGGTCTTTAGAT-TCGAT
66 TAGATCAAAATGTCATCTATAAACACAACCACAAACCGGTCCAGATACGGTCTGAAGATCT-GAT
* *
63014618 TCATCAAATCCATGAAAATAGCAGGTGCATTAGTGAGTCCGAAAGGCATAACCAAAAACTCACAT
130 TCATGAAATCCATGAAAATAGCAGGTGCAATAGTGAGTCCGAAAGGCATAACCAAAAACTCACAT
63014683 TTACTGAATTTCGAATACAACT
195 TTACTGAATTTCGAATACAACT
63014705 GCTTATCTCGCAACATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
1 GCTTATCTCGCAACATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
63014770 TAGATCAAAATGTCATCTATAAACACAACCACAAACCGGTCCAGATACGGTCTGAAGATCTGATT
66 TAGATCAAAATGTCATCTATAAACACAACCACAAACCGGTCCAGATACGGTCTGAAGATCTGATT
63014835 CATGAAATCCATGAAAATAGCAGGTGCAATAGTGAGTCCGAAAGGCATAACCAAAAACTCACATT
131 CATGAAATCCATGAAAATAGCAGGTGCAATAGTGAGTCCGAAAGGCATAACCAAAAACTCACATT
63014900 TACTGAATTTCGAATACAACT
196 TACTGAATTTCGAATACAACT
63014921 GCTTATCTCGCAACATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
1 GCTTATCTCGCAACATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
63014986 TAGATCAAAATGTCATCTATAAACACAACCACAAACCGGTCCAGATACGGTCTGAAGATCTGATT
66 TAGATCAAAATGTCATCTATAAACACAACCACAAACCGGTCCAGATACGGTCTGAAGATCTGATT
*
63015051 CATGAAATCCATGAAAATAGCAGGTGCAATAGTGAGTCCGAAAAGCATAACCAAAAACTCA
131 CATGAAATCCATGAAAATAGCAGGTGCAATAGTGAGTCCGAAAGGCATAACCAAAAACTCA
63015112 TAGTGTCAAT
Statistics
Matches: 396, Mismatches: 10, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
216 395 1.00
217 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (216 bp):
GCTTATCTCGCAACATCTGTAACACAAGTCTCAAATGTTCAGCATGTTGGGTTTCATCAAGGGAA
TAGATCAAAATGTCATCTATAAACACAACCACAAACCGGTCCAGATACGGTCTGAAGATCTGATT
CATGAAATCCATGAAAATAGCAGGTGCAATAGTGAGTCCGAAAGGCATAACCAAAAACTCACATT
TACTGAATTTCGAATACAACT
Found at i:63019512 original size:71 final size:71
Alignment explanation
Indices: 63019396--63019537 Score: 257
Period size: 71 Copynumber: 2.0 Consensus size: 71
63019386 CATACACAAC
* * *
63019396 TTATAACATACATAAATTAGCTTACTTACCTTATTTCTATAGATAACAGATTATTACATACTTGA
1 TTATAACATACATAAATTAACTTACTTACCTTATTTCCATAGATAACAGATTATTACATACCTGA
63019461 TCTTTT
66 TCTTTT
63019467 TTATAACATACATAAATTAACTTACTTACCTTATTTCCATAGATAACAGATTATTACATACCTGA
1 TTATAACATACATAAATTAACTTACTTACCTTATTTCCATAGATAACAGATTATTACATACCTGA
63019532 TCTTTT
66 TCTTTT
63019538 AGCTCATATT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.36, C:0.17, G:0.05, T:0.42
Consensus pattern (71 bp):
TTATAACATACATAAATTAACTTACTTACCTTATTTCCATAGATAACAGATTATTACATACCTGA
TCTTTT
Found at i:63020913 original size:13 final size:13
Alignment explanation
Indices: 63020895--63020919 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63020885 GATATAAATT
63020895 CACAAAAAATAAA
1 CACAAAAAATAAA
63020908 CACAAAAAATAA
1 CACAAAAAATAA
63020920 TTTTTAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (13 bp):
CACAAAAAATAAA
Found at i:63024205 original size:50 final size:51
Alignment explanation
Indices: 63024081--63024269 Score: 195
Period size: 50 Copynumber: 3.7 Consensus size: 51
63024071 ATTGTAAGAA
* *
63024081 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT--TTAAAATGGCTTTCGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTT--GATGGC-TTCGGT
* * * * *
63024133 CACGTGTGTAGTACTAAATGTAGGCTACTACGTGTACTTGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTTGATGGCTTCGGT
* ** ** *
63024183 CACATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGATGGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTTGATGGCTTCGGT
* *
63024234 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA
63024270 AAAGATAGCT
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
50 42 0.37
51 35 0.31
52 34 0.30
54 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTTGATGGCTTCGGT
Found at i:63027760 original size:46 final size:46
Alignment explanation
Indices: 63027707--63027880 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
63027697 TGGTTGAGCA
63027707 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * * *
63027753 TCCGAACTCGTTGAGTTGAGTCTGAGTT--C-GAGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAA-T--G
* * *
63027798 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * *
63027846 CCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
63027881 GGGCGGGTTA
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 7 0.07
44 1 0.01
45 1 0.01
46 60 0.57
47 26 0.25
48 1 0.01
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
Found at i:63027865 original size:93 final size:93
Alignment explanation
Indices: 63027704--63027874 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
63027694 GGATGGTTGA
* *
63027704 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
*
63027769 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
63027797 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
63027862 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63027875 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:63030827 original size:15 final size:16
Alignment explanation
Indices: 63030802--63030849 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
63030792 TAGTATCTTA
*
63030802 TCTTGGGTTTCTTTAT
1 TCTTGGATTTCTTTAT
*
63030818 TC-TGGATTTCTCTA-
1 TCTTGGATTTCTTTAT
63030832 TCTTGGATTTCTTTAT
1 TCTTGGATTTCTTTAT
63030848 TC
1 TC
63030850 GGTTTCCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.07
15 21 0.78
16 4 0.15
ACGTcount: A:0.10, C:0.17, G:0.15, T:0.58
Consensus pattern (16 bp):
TCTTGGATTTCTTTAT
Found at i:63033676 original size:40 final size:40
Alignment explanation
Indices: 63033610--63033776 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
63033600 AAATTGAATG
* * *
63033610 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63033649 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
63033689 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
63033729 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
63033769 ATATCCGG
1 ATATCCGG
63033777 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63041681 original size:40 final size:40
Alignment explanation
Indices: 63041615--63041781 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
63041605 AAATTGAATG
* * * *
63041615 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63041654 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
63041694 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
63041734 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
63041774 ATATCCGG
1 ATATCCGG
63041782 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 15 0.14
40 87 0.84
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63044830 original size:40 final size:40
Alignment explanation
Indices: 63044764--63044930 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
63044754 AAATTGAATG
* * *
63044764 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63044803 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
63044843 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
63044883 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
63044923 ATATCCGG
1 ATATCCGG
63044931 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63052842 original size:40 final size:40
Alignment explanation
Indices: 63052776--63052942 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
63052766 AAATTGAATG
* * *
63052776 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63052815 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
63052855 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
63052895 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
63052935 ATATCCGG
1 ATATCCGG
63052943 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63055002 original size:17 final size:19
Alignment explanation
Indices: 63054960--63055003 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
63054950 ATGAAATTTT
*
63054960 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
63054979 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
63054997 AA-TATTA
1 AATTATTA
63055004 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:63056871 original size:27 final size:28
Alignment explanation
Indices: 63056794--63056862 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
63056784 GCGTAGATCA
*
63056794 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
63056822 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
63056850 CGATA-TACCCCTA
1 CGAAATTACCCCTA
63056863 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:63058903 original size:46 final size:44
Alignment explanation
Indices: 63058852--63059028 Score: 167
Period size: 46 Copynumber: 3.9 Consensus size: 44
63058842 ATGGTTGAGC
*
63058852 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
63058896 ATGTCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* ** *
63058945 ATCCGAGCTTGTTGAGTTGAGTCAGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* *
63058990 CACCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
63059029 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 19, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.63
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:63059009 original size:93 final size:93
Alignment explanation
Indices: 63058850--63059020 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
63058840 GGATGGTTGA
* ***
63058850 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
63058915 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
63058943 GCATCCGAGCTTGTTGAGTTGAGTCAGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
63059008 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63059021 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:63077820 original size:40 final size:40
Alignment explanation
Indices: 63077693--63077822 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
63077683 TTGCTGGAAA
* * *
63077693 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63077733 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63077773 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63077813 TTATATCCGG
1 TTATATCCGG
63077823 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63085925 original size:40 final size:40
Alignment explanation
Indices: 63085798--63085927 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
63085788 TTGCTGGAAA
* * *
63085798 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63085838 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63085878 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63085918 TTATATCCGG
1 TTATATCCGG
63085928 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63095821 original size:37 final size:37
Alignment explanation
Indices: 63095762--63095907 Score: 222
Period size: 37 Copynumber: 3.9 Consensus size: 37
63095752 AGCTCAGATG
* *
63095762 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
63095799 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
63095835 TATATTTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
63095873 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
63095908 ATATATTTCC
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.01
37 96 0.98
38 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:63095864 original size:74 final size:74
Alignment explanation
Indices: 63095767--63095918 Score: 268
Period size: 74 Copynumber: 2.1 Consensus size: 74
63095757 AGATGAAATC
* *
63095767 TCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
63095832 GAATATATT
66 GAATATATT
* *
63095841 TCCACACGTAGTCATCAGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
63095906 GAATATATT
66 GAATATATT
63095915 TCCA
1 TCCA
63095919 AGTTTCATGT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (74 bp):
TCCACACGAAGTCATCAGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
GAATATATT
Found at i:63097515 original size:40 final size:40
Alignment explanation
Indices: 63097471--63097611 Score: 221
Period size: 40 Copynumber: 3.5 Consensus size: 40
63097461 TTTGCACAAT
63097471 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
*
63097511 TGCCTTCGGGTCTTAGGCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
* **
63097551 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAA
*
63097591 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
63097612 GTATCATTCA
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 93 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
Found at i:63105579 original size:40 final size:40
Alignment explanation
Indices: 63105535--63105675 Score: 230
Period size: 40 Copynumber: 3.5 Consensus size: 40
63105525 TTTGCACAAT
63105535 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
63105575 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
* **
63105615 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAA
*
63105655 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
63105676 GTATCATTCA
Statistics
Matches: 96, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 95 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
Found at i:63113563 original size:40 final size:40
Alignment explanation
Indices: 63113519--63113659 Score: 264
Period size: 40 Copynumber: 3.5 Consensus size: 40
63113509 TTTGCACAAT
* *
63113519 TGCCTTCGGGTCTTAGCCCAGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACTAA
63113559 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACTAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACTAA
63113599 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACTAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACTAA
63113639 TGCCTTCGGGTCTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
63113660 GTATCATTCA
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACTAA
Found at i:63114990 original size:27 final size:28
Alignment explanation
Indices: 63114950--63115017 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
63114940 TTTAAAACCC
*
63114950 TAGGGGT-ATATCGGTAA-TTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63114976 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63115004 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
63115018 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 9 0.23
28 23 0.59
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:63119281 original size:28 final size:28
Alignment explanation
Indices: 63119236--63119304 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
63119226 TTTAAAACCC
*
63119236 TAGGGGT-ATATCGGTAATTATGCTCTT
1 TAGGGGTAATTTCGGTAATTATGCTCTT
*
63119263 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTATGCTCTT
63119291 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
63119305 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.42
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTATGCTCTT
Found at i:63122929 original size:48 final size:48
Alignment explanation
Indices: 63122871--63123310 Score: 709
Period size: 48 Copynumber: 9.0 Consensus size: 48
63122861 ATATACACAC
* * * *
63122871 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
63122919 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
63122967 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
63123017 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
63123067 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
63123115 ATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
63123163 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
63123211 ATCTCATATATATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
63123261 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
63123309 AT
1 AT
63123311 ATTTATCTTG
Statistics
Matches: 377, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
48 236 0.63
50 141 0.37
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:63122982 original size:98 final size:97
Alignment explanation
Indices: 63122871--63123310 Score: 713
Period size: 98 Copynumber: 4.5 Consensus size: 97
63122861 ATATACACAC
* * * *
63122871 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTC-ATACATATTTC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTC
* *
63122935 ACACTAGCCATTCGGCTTTACCACATATACGT
66 ACATTAGCCATTCGGCTTTACCACATATACAT
* * *
63122967 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATAT
63123032 TTCACATTAGCCATTCGGCTTTACCACATATACAT
63 TTCACATTAGCCATTCGGCTTTACCACATATACAT
*
63123067 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-CCATACATATTTC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTC
63123131 ACATTAGCCATTCGGCTTTACCACATATACAT
66 ACATTAGCCATTCGGCTTTACCACATATACAT
*
63123163 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTT
*
63123228 CACATTAGCCATTCAGCTTTACCACATATACAT
65 CACATTAGCCATTCGGCTTTACCACATATACAT
*
63123261 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
63123311 ATTTATCTTG
Statistics
Matches: 323, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
96 98 0.30
97 2 0.01
98 178 0.55
100 45 0.14
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (97 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTC
ACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:63133275 original size:47 final size:45
Alignment explanation
Indices: 63133168--63133328 Score: 141
Period size: 47 Copynumber: 3.5 Consensus size: 45
63133158 ATTGTGAGCT
* * * *
63133168 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGA-TAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-C-TATGA-GACGAGTC
* * *
63133214 AGTGTAGGACCATGTCTGGGATATGGCATTGGC-ATAGAGACGAGTGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTAT-GAGACGAGT-C
* *
63133261 TAGTGTAAGA-CATGTCTGGGACATGCATCGGCTATGAGATGTGTC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCTATGAGACGAGTC
*
63133306 AGTGTAAGACCATGTCTAGGACA
1 AGTGTAAGACCATGTCTGGGACA
63133329 CGGCATCAGC
Statistics
Matches: 95, Mismatches: 12, Indels: 17
0.77 0.10 0.14
Matches are distributed among these distances:
44 9 0.09
45 17 0.18
46 25 0.26
47 30 0.32
48 14 0.15
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTATGAGACGAGTC
Found at i:63133361 original size:94 final size:93
Alignment explanation
Indices: 63133163--63133389 Score: 251
Period size: 94 Copynumber: 2.4 Consensus size: 93
63133153 GGGTTATTGT
* *
63133163 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAGGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CACATGATGATAGCCAGTGTAAGACCATG
* * * ** *
63133228 TCTGGGATATGGCATTGGCATAGAGACGA
65 TCTAGGACACGGCATCAGCACAGAGACGA
* * * *
63133257 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-TATGA-GATGTGTCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACATGATGAT-AGCCAGTGTAAGACCATG
* *
63133320 TCTAGGACACGGCATCAGCACAGATATGCTA
65 TCTAGGACACGGCATCAGCACAGAGA--CGA
*
63133351 GAGCTTGTGTAAGACCATGTCTGGGACATGTCATCGGCA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCA
63133390 TCTTACCCCA
Statistics
Matches: 111, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
91 3 0.03
92 37 0.33
93 1 0.01
94 48 0.43
95 15 0.14
96 7 0.06
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (93 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACATGATGATAGCCAGTGTAAGACCATGT
CTAGGACACGGCATCAGCACAGAGACGA
Found at i:63143419 original size:29 final size:29
Alignment explanation
Indices: 63143386--63143516 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
63143376 GTGACGAGAT
63143386 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63143415 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
63143444 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
63143473 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
63143502 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
63143517 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:63145042 original size:46 final size:45
Alignment explanation
Indices: 63144982--63145104 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 45
63144972 AGACGAGAGC
63144982 TAGTGTAAGA-ATGTCTGGGACATGCATCGGCCT-TAAGATGTAAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTATAAGATGT-A-T
* * *
63145027 TAGTTTAAGACATGTCTGGGACATGCATTGG-CTATGAGATGTAT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTATAAGATGTAT
*
63145071 TAGTGTAAGACCATGTCTTGGACATGGCATCGGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
63145105 ACGGATATGT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
44 10 0.15
45 25 0.37
46 32 0.48
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTATAAGATGTAT
Found at i:63145126 original size:50 final size:49
Alignment explanation
Indices: 63145071--63145202 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 49
63145061 TGAGATGTAT
63145071 TAGTGTAAGACCATGTCTTGGACATGGCATCGGCACGGAT-ATGTGA-GAGC
1 TAGTGTAAGACCATGTCTTGGACATGGCATCGGCAC--ATGATG-GATGAGC
* *
63145121 TAGTGTAAGACTATGT-TTGGGACATGGCATC-G-ACTTGATGGATGAGC
1 TAGTGTAAGACCATGTCTT-GGACATGGCATCGGCACATGATGGATGAGC
* * *
63145168 CAGTGTAAGACCATGCCTAGGACATGGCATCGGCA
1 TAGTGTAAGACCATGTCTTGGACATGGCATCGGCA
63145203 TTATACCCTA
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
46 3 0.04
47 32 0.46
48 4 0.06
49 4 0.06
50 27 0.39
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (49 bp):
TAGTGTAAGACCATGTCTTGGACATGGCATCGGCACATGATGGATGAGC
Found at i:63146905 original size:40 final size:40
Alignment explanation
Indices: 63146835--63147076 Score: 339
Period size: 40 Copynumber: 6.0 Consensus size: 40
63146825 GGATTTAACA
* *
63146835 GGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
63146874 GGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
63146914 AGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
63146954 GGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
63146994 AGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
63147034 GGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGCCC
63147075 GG
1 GG
63147077 TTATCATCCA
Statistics
Matches: 184, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 15 0.08
40 140 0.76
41 24 0.13
42 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:63149775 original size:19 final size:22
Alignment explanation
Indices: 63149742--63149781 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
63149732 ATGTTCAAGT
63149742 TCCACACAGGCGTGT-TGCCCA
1 TCCACACAGGCGTGTGTGCCCA
63149763 TCCACAC-GG-GTGTGTGCCC
1 TCCACACAGGCGTGTGTGCCC
63149782 TGTTTCAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.15, C:0.38, G:0.28, T:0.20
Consensus pattern (22 bp):
TCCACACAGGCGTGTGTGCCCA
Found at i:63150947 original size:16 final size:16
Alignment explanation
Indices: 63150926--63150957 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63150916 CCGTGTGAGA
63150926 TTACTGAAAGGATAGG
1 TTACTGAAAGGATAGG
63150942 TTACTGAAAGGATAGG
1 TTACTGAAAGGATAGG
63150958 GCCTGCAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.31, T:0.25
Consensus pattern (16 bp):
TTACTGAAAGGATAGG
Found at i:63156921 original size:56 final size:56
Alignment explanation
Indices: 63156834--63156939 Score: 176
Period size: 56 Copynumber: 1.9 Consensus size: 56
63156824 GTAACCACAT
*
63156834 ATATCGATGCCAACGTACTAGACGTGGTCTTACTCGCACACATATATCGAAATCAC
1 ATATCGATGCCAACGTACTAAACGTGGTCTTACTCGCACACATATATCGAAATCAC
* * *
63156890 ATATCGATGCCAACGTATTAAATGTGTTCTTACTCGCACACATATATCGA
1 ATATCGATGCCAACGTACTAAACGTGGTCTTACTCGCACACATATATCGA
63156940 TGCCATGGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (56 bp):
ATATCGATGCCAACGTACTAAACGTGGTCTTACTCGCACACATATATCGAAATCAC
Found at i:63163913 original size:29 final size:29
Alignment explanation
Indices: 63163843--63163914 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
63163833 TTGTTCTGGG
*
63163843 AAAAATAATTTTGACAAGATAGGTTATGA
1 AAAAATAATTTTGACAAGATAGATTATGA
* ** *
63163872 AAAAATAAATTTGACGTGATATATTATGA
1 AAAAATAATTTTGACAAGATAGATTATGA
*
63163901 AAAAATTATTTTGA
1 AAAAATAATTTTGA
63163915 TGAGATGGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.49, C:0.03, G:0.14, T:0.35
Consensus pattern (29 bp):
AAAAATAATTTTGACAAGATAGATTATGA
Found at i:63164143 original size:59 final size:58
Alignment explanation
Indices: 63163961--63164161 Score: 298
Period size: 59 Copynumber: 3.4 Consensus size: 58
63163951 CACAGTCAGT
*
63163961 AATATATTTGTACAACAATATTCAAAAGAGCTTCTATTTTATTAAATGAAACAATATAAA
1 AATA-ATTTGTACAAAAATATTCAAAAGA-CTTCTATTTTATTAAATGAAACAATATAAA
** *
63164021 AATAATTTGTACAAAAATATT-AAAA-AAATCTATTTTATTAAATGAAACAATATTAA
1 AATAATTTGTACAAAAATATTCAAAAGACTTCTATTTTATTAAATGAAACAATATAAA
* *
63164077 AATAATTTGTACAAAAATATTGAAAAGTACTTCTTTTTTATTAAATGAAACAATATAAA
1 AATAATTTGTACAAAAATATTCAAAAG-ACTTCTATTTTATTAAATGAAACAATATAAA
*
63164136 AACAATTTGTACAAAAATATTCAAAA
1 AATAATTTGTACAAAAATATTCAAAA
63164162 ATAAATCAAT
Statistics
Matches: 128, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
56 48 0.38
57 5 0.04
58 4 0.03
59 67 0.52
60 4 0.03
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.35
Consensus pattern (58 bp):
AATAATTTGTACAAAAATATTCAAAAGACTTCTATTTTATTAAATGAAACAATATAAA
Found at i:63168186 original size:18 final size:18
Alignment explanation
Indices: 63168146--63168196 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
63168136 TAAAAAGAAT
* *
63168146 TATTAAAAAATTTAATTA
1 TATTAAAAAATTAAATGA
* *
63168164 AATTATAAAATTAAATGA
1 TATTAAAAAATTAAATGA
*
63168182 TATTAAAAAAATAAA
1 TATTAAAAAATTAAA
63168197 ATTAACCCTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
TATTAAAAAATTAAATGA
Found at i:63168975 original size:12 final size:12
Alignment explanation
Indices: 63168958--63168990 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
63168948 CGGCCCGCCC
63168958 ATATTAATTTTT
1 ATATTAATTTTT
63168970 ATATT-ATTTTT
1 ATATTAATTTTT
63168981 ATA-TAATTTT
1 ATATTAATTTT
63168991 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:63169157 original size:30 final size:31
Alignment explanation
Indices: 63169114--63169176 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
63169104 CTTAACAAGA
*
63169114 AAATGGTTCTAAAATAAT-AACAAAATTAAC
1 AAATGGTTCTAAAATAATAAAAAAAATTAAC
63169144 AAATGTGTT-TAAAATAATAAAAAAAATTAAC
1 AAATG-GTTCTAAAATAATAAAAAAAATTAAC
63169175 AA
1 AA
63169177 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 14 0.47
31 16 0.53
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (31 bp):
AAATGGTTCTAAAATAATAAAAAAAATTAAC
Found at i:63169252 original size:11 final size:11
Alignment explanation
Indices: 63169236--63169261 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63169226 ATATAATAGT
63169236 AAAATAGGGAG
1 AAAATAGGGAG
63169247 AAAATAGGGAG
1 AAAATAGGGAG
63169258 AAAA
1 AAAA
63169262 CAATAAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.31, T:0.08
Consensus pattern (11 bp):
AAAATAGGGAG
Found at i:63170459 original size:23 final size:23
Alignment explanation
Indices: 63170433--63170476 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
63170423 TTCAACATTT
*
63170433 TTATATTATTTATTT-TAAAATAA
1 TTAT-TTATTAATTTGTAAAATAA
*
63170456 TTATTTCTTAATTTGTAAAAT
1 TTATTTATTAATTTGTAAAAT
63170477 TATGATAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TTATTTATTAATTTGTAAAATAA
Found at i:63171596 original size:16 final size:16
Alignment explanation
Indices: 63171572--63171612 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
63171562 TCAAACAAAA
*
63171572 AAAGAAACAACTTGGG
1 AAAGCAACAACTTGGG
*
63171588 AAAGCAACAATTTGGG
1 AAAGCAACAACTTGGG
63171604 AAAGCAACA
1 AAAGCAACA
63171613 TCCAAGTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.15, G:0.22, T:0.12
Consensus pattern (16 bp):
AAAGCAACAACTTGGG
Found at i:63171596 original size:42 final size:41
Alignment explanation
Indices: 63171503--63171596 Score: 95
Period size: 41 Copynumber: 2.3 Consensus size: 41
63171493 AAAATATGAA
* *
63171503 GGAAAGCAACATCAATGTCTAGACAAAAAATAAAGCAACTT
1 GGAAAGCAACATCAATGTCTAAACAAAAAATAAAACAACTT
* *
63171544 GAAAACCAACATCCAA-GT-TCAAACAAAAAA-AGAAACAACTT
1 GGAAAGCAACAT-CAATGTCT-AAACAAAAAATA-AAACAACTT
63171585 GGGAAAGCAACA
1 -GGAAAGCAACA
63171597 ATTTGGGAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
40 2 0.05
41 29 0.67
42 12 0.28
ACGTcount: A:0.54, C:0.19, G:0.14, T:0.13
Consensus pattern (41 bp):
GGAAAGCAACATCAATGTCTAAACAAAAAATAAAACAACTT
Found at i:63174475 original size:158 final size:158
Alignment explanation
Indices: 63174184--63174502 Score: 611
Period size: 158 Copynumber: 2.0 Consensus size: 158
63174174 CCTGGTGCAT
*
63174184 AGGCAGGCATCTTGTATTAGGCTCAGAATTGAGCTTCTCCATTTCTAAACAAGTAAACTTTGCAG
1 AGGCAGGCATCTTGTATTACGCTCAGAATTGAGCTTCTCCATTTCTAAACAAGTAAACTTTGCAG
*
63174249 AGAAGATGAACTTCTCTGCATCCAAATTGTTGTTGCATTCCATGACAATAATTTGGACGTAACGT
66 AGAAGATGAACTTCTCTGCATCCAAATTGTTGTTGCATTCCATGACAATAATTTGGACGTAACAT
63174314 AAAGATTTGAACATGAAGTTTCAAAAGA
131 AAAGATTTGAACATGAAGTTTCAAAAGA
63174342 AGGCAGGCATCTTGTATTACGCTCAGAATTGAGCTTCTCCATTTCTAAACAAGTAAACTTTGCAG
1 AGGCAGGCATCTTGTATTACGCTCAGAATTGAGCTTCTCCATTTCTAAACAAGTAAACTTTGCAG
*
63174407 AGAAGATGAACTTCTCTGCATCCAAATTGTTGTTGCATTCCATGACAATAATTTGGACGTGACAT
66 AGAAGATGAACTTCTCTGCATCCAAATTGTTGTTGCATTCCATGACAATAATTTGGACGTAACAT
63174472 AAAGATTTGAACATGAAGTTTCAAAAGA
131 AAAGATTTGAACATGAAGTTTCAAAAGA
63174500 AGG
1 AGG
63174503 AATTAACAAA
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
158 158 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (158 bp):
AGGCAGGCATCTTGTATTACGCTCAGAATTGAGCTTCTCCATTTCTAAACAAGTAAACTTTGCAG
AGAAGATGAACTTCTCTGCATCCAAATTGTTGTTGCATTCCATGACAATAATTTGGACGTAACAT
AAAGATTTGAACATGAAGTTTCAAAAGA
Found at i:63176921 original size:14 final size:14
Alignment explanation
Indices: 63176897--63176936 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
63176887 AACAAAGAAT
*
63176897 TTTCCCCTTTTTTC
1 TTTCTCCTTTTTTC
*
63176911 TTTCTCTTTTTTTC
1 TTTCTCCTTTTTTC
63176925 TTTCTCCTTTTT
1 TTTCTCCTTTTT
63176937 CACTCAGCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTCTCCTTTTTTC
Found at i:63181820 original size:16 final size:15
Alignment explanation
Indices: 63181782--63181820 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
63181772 TGGATTCTCG
*
63181782 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
63181797 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
63181812 TATTCTTGG
1 TA-TCTTGG
63181821 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:63184687 original size:50 final size:49
Alignment explanation
Indices: 63184567--63184810 Score: 319
Period size: 50 Copynumber: 4.9 Consensus size: 49
63184557 GCTATTGTGA
*
63184567 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
63184616 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGA-AACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * **
63184665 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
63184715 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
63184765 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
63184811 GCTTCGGCTA
Statistics
Matches: 166, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
48 2 0.01
49 81 0.49
50 83 0.50
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:63184702 original size:28 final size:28
Alignment explanation
Indices: 63184670--63184753 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
63184660 AACTTCGATC
63184670 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
63184698 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
63184720 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
63184748 ACGTGT
1 ACGTGT
63184754 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:63184776 original size:99 final size:99
Alignment explanation
Indices: 63184569--63184810 Score: 317
Period size: 99 Copynumber: 2.4 Consensus size: 99
63184559 TATTGTGAGG
* * *
63184569 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
63184634 AAGTGCAGGCTACTATGCGTACCTGAAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGAAACTTCGA
* * ** *
63184668 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
63184733 TAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GG
65 TAAGTGCAGGCTACTACGCGTACCGGA-AACTTCGA
* * *
63184767 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
63184811 GCTTCGGCTA
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 82 0.66
100 41 0.33
101 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGAAACTTCGA
Found at i:63190604 original size:2 final size:2
Alignment explanation
Indices: 63190597--63190622 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63190587 TTAAATACAA
63190597 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
63190623 GACTATATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63193797 original size:16 final size:16
Alignment explanation
Indices: 63193764--63193799 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
63193754 TTTTATATAA
**
63193764 ATATAAATATTTTTTT
1 ATATAAATATTTGCTT
63193780 ATATAAATATTTGCTT
1 ATATAAATATTTGCTT
63193796 ATAT
1 ATAT
63193800 TAATTTGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (16 bp):
ATATAAATATTTGCTT
Found at i:63194049 original size:43 final size:43
Alignment explanation
Indices: 63193986--63194073 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 43
63193976 ATTGTAAACA
*
63193986 AAATCTACACTATAACTTGGCATTGTACGCTTGTGGTTGATAT
1 AAATCTACACTATAACTTGGCATCGTACGCTTGTGGTTGATAT
* *
63194029 AAATCTATACTATAATTTGGCATCGTACGCTTGTGGTTGATAT
1 AAATCTACACTATAACTTGGCATCGTACGCTTGTGGTTGATAT
63194072 AA
1 AA
63194074 TTTAAAGTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.38
Consensus pattern (43 bp):
AAATCTACACTATAACTTGGCATCGTACGCTTGTGGTTGATAT
Found at i:63195913 original size:20 final size:20
Alignment explanation
Indices: 63195888--63195927 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
63195878 TGTCAAGGAT
63195888 GAAACCAAAGCATAAATTTA
1 GAAACCAAAGCATAAATTTA
63195908 GAAACCAAAGCATAAATTTA
1 GAAACCAAAGCATAAATTTA
63195928 TACTTGTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.15, G:0.10, T:0.20
Consensus pattern (20 bp):
GAAACCAAAGCATAAATTTA
Found at i:63199994 original size:17 final size:18
Alignment explanation
Indices: 63199973--63200013 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
63199963 ATTTAGATAT
63199973 TATATTAAAA-TTATTTAA
1 TATATTAAAAGTT-TTTAA
*
63199991 -ATATAAAAAGTTTTTAA
1 TATATTAAAAGTTTTTAA
63200008 TATATT
1 TATATT
63200014 TTTAATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
TATATTAAAAGTTTTTAA
Found at i:63200050 original size:9 final size:9
Alignment explanation
Indices: 63200032--63200080 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
63200022 TTGATAAGAA
63200032 AATA-TTTT
1 AATATTTTT
63200040 AATATTTTT
1 AATATTTTT
63200049 AATATTTTT
1 AATATTTTT
* *
63200058 AAT-GTATT
1 AATATTTTT
63200066 AA-ATTTTT
1 AATATTTTT
63200074 AATATTT
1 AATATTT
63200081 ATTTTTATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
8 14 0.41
9 20 0.59
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (9 bp):
AATATTTTT
Found at i:63200110 original size:19 final size:19
Alignment explanation
Indices: 63200086--63200123 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63200076 TATTTATTTT
63200086 TATATAAAAAATTAATATA
1 TATATAAAAAATTAATATA
* *
63200105 TATATATATAATTAATATA
1 TATATAAAAAATTAATATA
63200124 AGCAGGGGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TATATAAAAAATTAATATA
Found at i:63200975 original size:20 final size:21
Alignment explanation
Indices: 63200940--63200987 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
63200930 AAATATTATA
63200940 CAATAATATAAATGTGTGAAT
1 CAATAATATAAATGTGTGAAT
63200961 CAATAATAT-AATGTGTGAAT
1 CAATAATATAAATGTGTGAAT
*
63200981 CATTAAT
1 CAATAAT
63200988 CATTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.35
Consensus pattern (21 bp):
CAATAATATAAATGTGTGAAT
Found at i:63202815 original size:29 final size:29
Alignment explanation
Indices: 63202773--63202830 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
63202763 CAATATAATG
63202773 AATTGAGTAGTTTTTTGTAGTTTAAAGGT
1 AATTGAGTAGTTTTTTGTAGTTTAAAGGT
63202802 AATTGAGTAGTTTTTTGTAGTTTAAAGGT
1 AATTGAGTAGTTTTTTGTAGTTTAAAGGT
63202831 TGAGAATTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (29 bp):
AATTGAGTAGTTTTTTGTAGTTTAAAGGT
Found at i:63206664 original size:2 final size:2
Alignment explanation
Indices: 63206657--63206688 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
63206647 ACACTCATCA
63206657 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63206689 ATTTGCTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:63208562 original size:27 final size:27
Alignment explanation
Indices: 63208465--63208562 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 27
63208455 TTTAGTTTAC
* *
63208465 TAAAATTACCCAAATACCCTT--AGTTG
1 TAAAATTACTCAAATA-CCTTCGACTTG
* * * * *
63208491 TAAAAATACTAAAAAACCCTCGATTTG
1 TAAAATTACTCAAATACCTTCGACTTG
*
63208518 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTCAAATACCTTCGACTTG
*
63208545 TGAAATTAC-CAAAGTACC
1 TAAAATTACTCAAA-TACC
63208563 CCGATTTACA
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
25 3 0.05
26 15 0.27
27 38 0.68
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAAATTACTCAAATACCTTCGACTTG
Found at i:63208588 original size:26 final size:27
Alignment explanation
Indices: 63208559--63208741 Score: 219
Period size: 27 Copynumber: 6.9 Consensus size: 27
63208549 ATTACCAAAG
*
63208559 TACCC-CGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
63208585 TACCC-CAATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
**
63208611 TACCC-CGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
63208637 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
63208664 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
63208691 TACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
63208718 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
63208742 AAATACCTTG
Statistics
Matches: 136, Mismatches: 20, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
26 50 0.37
27 86 0.63
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:63208703 original size:54 final size:54
Alignment explanation
Indices: 63208559--63208740 Score: 262
Period size: 54 Copynumber: 3.4 Consensus size: 54
63208549 ATTACCAAAG
*
63208559 TACCC-CGATTTACAGAATTACTGTTTTACCC-CAATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACCATTT
*
63208611 TACCC-CGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACCATTT
* * ** **
63208664 TACCCTCAATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACCATTT
*
63208718 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
63208741 AAAATACCTT
Statistics
Matches: 116, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 30 0.26
53 25 0.22
54 61 0.53
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAATTACCATTT
Found at i:63208748 original size:27 final size:27
Alignment explanation
Indices: 63208691--63208938 Score: 137
Period size: 27 Copynumber: 9.1 Consensus size: 27
63208681 ATTACTGTTT
* ** ***
63208691 TACCCTTGATTTACAGAATTATTATTT
1 TACCCTTGATTTACAAAATTACCAAAA
* *
63208718 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* **
63208745 TA-CCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* **
63208771 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
* *** *
63208798 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
** **
63208825 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* *
63208852 TACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAA
*
63208879 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACCA-AAA
* * **
63208908 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
63208935 TACC
1 TACC
63208939 TTTGGTTTGT
Statistics
Matches: 178, Mismatches: 34, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
26 23 0.13
27 129 0.72
28 7 0.04
29 19 0.11
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:63208826 original size:54 final size:54
Alignment explanation
Indices: 63208718--63208856 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
63208708 ATTATTATTT
* ** *
63208718 TACCCTCGATTTACAAAATTACTAAAATA-CCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * *
63208771 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
63208825 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
63208857 CTGATTTACA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
52 1 0.01
53 22 0.29
54 51 0.68
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:63208943 original size:27 final size:27
Alignment explanation
Indices: 63208731--63208947 Score: 154
Period size: 27 Copynumber: 8.0 Consensus size: 27
63208721 CCTCGATTTA
*
63208731 CAAAATTACTAAAATA-CCTTGGTTTG
1 CAAAATTACCAAAATACCCTTGGTTTG
* * *
63208757 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACCAAAATACCCTTGGTTTG
*
63208784 TAAAATTACCAAAATACCCTTGGTTTG
1 CAAAATTACCAAAATACCCTTGGTTTG
** * ***
63208811 TGAAATTACCGAAATACCCTCAATTTG
1 CAAAATTACCAAAATACCCTTGGTTTG
* * * *
63208838 TAAAATTACCAAAATACCCCTGATTTA
1 CAAAATTACCAAAATACCCTTGGTTTG
* *
63208865 CAAAGTTA-CAGAAATACCCTTGACTTT-
1 CAAAATTACCA-AAATACCCTTG-GTTTG
* * *
63208892 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACCA-AAATACCCTTGGTTTG
** *
63208921 CAAAATTACTGAAATACCTTTGGTTTG
1 CAAAATTACCAAAATACCCTTGGTTTG
63208948 TTGATTTACC
Statistics
Matches: 156, Mismatches: 28, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
26 16 0.10
27 114 0.73
28 7 0.04
29 19 0.12
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
CAAAATTACCAAAATACCCTTGGTTTG
Found at i:63209033 original size:27 final size:27
Alignment explanation
Indices: 63208987--63209065 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
63208977 AAATGACTAA
*
63208987 AATACCCCTATTAGGGTAAAGTGACCGT
1 AATACCCCT-GTAGGGTAAAGTGACCGT
63209015 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAGTGACCGT
* *
63209042 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAGTGAC
63209066 GAATATGCCC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 38 0.83
28 8 0.17
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAGTGACCGT
Found at i:63210117 original size:42 final size:42
Alignment explanation
Indices: 63210058--63210149 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
63210048 TAGTCTCCCC
* ** **
63210058 AAATGGGCTTGCATACATTCATTGGTATTTTATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
63210100 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
63210142 AAATGGGC
1 AAATGGGC
63210150 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:63210250 original size:31 final size:31
Alignment explanation
Indices: 63210173--63210251 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
63210163 CGTTTACAGT
*
63210173 AAAGGCTTCGGCCCAATGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
63210204 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
63210235 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
63210252 AATCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:63215695 original size:41 final size:42
Alignment explanation
Indices: 63215633--63215729 Score: 153
Period size: 41 Copynumber: 2.4 Consensus size: 42
63215623 CTATCTCGGT
* *
63215633 AGTGCCTTACATAG-CTGAAGCTATCTCAGTCTCGCACACTA
1 AGTGCCTTACATAGTCTAAAGCTATCTCAGTCTAGCACACTA
*
63215674 AGTGCCTTACATAGTC-AAAGCTATCTCTGTCTAGCACACTA
1 AGTGCCTTACATAGTCTAAAGCTATCTCAGTCTAGCACACTA
63215715 AGTGCCTTACATAGT
1 AGTGCCTTACATAGT
63215730 TGAATTGTCG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 51 0.98
42 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (42 bp):
AGTGCCTTACATAGTCTAAAGCTATCTCAGTCTAGCACACTA
Found at i:63223097 original size:40 final size:40
Alignment explanation
Indices: 63223038--63223255 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
63223028 TGGATGATAA
* ** * *
63223038 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* *
63223078 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
63223118 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
63223158 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
63223198 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
63223238 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63223256 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:63227315 original size:40 final size:41
Alignment explanation
Indices: 63227263--63227358 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 41
63227253 TATCTTAGTA
*
63227263 TCGCACACTTAGTGCC-TCATATAGCTGAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCAT-ATATAGCCGAAGCTATTTCCAAC
* * * *
63227303 TCGCACACTTAGTGCCATTTGTAGCCGAAGTTATTTCGAAC
1 TCGCACACTTAGTGCCATATATAGCCGAAGCTATTTCCAAC
63227344 T-GCACACTTAGTGCC
1 TCGCACACTTAGTGCC
63227359 GAACATAGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 41 0.84
41 8 0.16
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATATATAGCCGAAGCTATTTCCAAC
Found at i:63230235 original size:26 final size:26
Alignment explanation
Indices: 63230199--63230251 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
63230189 CTTTGTTATG
63230199 TTGAAGTTCCAAATTCGATAGAACTT
1 TTGAAGTTCCAAATTCGATAGAACTT
63230225 TTGAAGTTCCAAATTCGATAGAACTT
1 TTGAAGTTCCAAATTCGATAGAACTT
63230251 T
1 T
63230252 CTATGAGTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (26 bp):
TTGAAGTTCCAAATTCGATAGAACTT
Found at i:63236724 original size:2 final size:2
Alignment explanation
Indices: 63236717--63236750 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
63236707 ATTGAAAGGG
*
63236717 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63236751 GTATTAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:63238519 original size:18 final size:18
Alignment explanation
Indices: 63238496--63238531 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
63238486 TTTCTACATA
63238496 CTTGGTCCACTAGTACGT
1 CTTGGTCCACTAGTACGT
63238514 CTTGGTCCACTAGTACGT
1 CTTGGTCCACTAGTACGT
63238532 GTCTGCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.22, T:0.33
Consensus pattern (18 bp):
CTTGGTCCACTAGTACGT
Found at i:63241331 original size:15 final size:16
Alignment explanation
Indices: 63241300--63241337 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
63241290 TAAATTATGA
63241300 ATATGTGTGTAATGTG
1 ATATGTGTGTAATGTG
*
63241316 ATATGTGT-TTATGTG
1 ATATGTGTGTAATGTG
*
63241331 ACATGTG
1 ATATGTG
63241338 ACCATTATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.24, C:0.03, G:0.29, T:0.45
Consensus pattern (16 bp):
ATATGTGTGTAATGTG
Found at i:63245440 original size:74 final size:74
Alignment explanation
Indices: 63245315--63245463 Score: 289
Period size: 74 Copynumber: 2.0 Consensus size: 74
63245305 AAAGAGCTTG
*
63245315 TTCTTAAGTGTTTTATGAAGTTTTTTGTTACTTATTAGATTTTATGTTCAAAGTTAGTTTTCTTG
1 TTCTTAAGTGTTTTATGAAGTTTTTTGTTACTTATTAGATTTTATGCTCAAAGTTAGTTTTCTTG
63245380 TGTTTCTTT
66 TGTTTCTTT
63245389 TTCTTAAGTGTTTTATGAAGTTTTTTGTTACTTATTAGATTTTATGCTCAAAGTTAGTTTTCTTG
1 TTCTTAAGTGTTTTATGAAGTTTTTTGTTACTTATTAGATTTTATGCTCAAAGTTAGTTTTCTTG
63245454 TGTTTCTTT
66 TGTTTCTTT
63245463 T
1 T
63245464 ACTTTTGATA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.19, C:0.07, G:0.15, T:0.59
Consensus pattern (74 bp):
TTCTTAAGTGTTTTATGAAGTTTTTTGTTACTTATTAGATTTTATGCTCAAAGTTAGTTTTCTTG
TGTTTCTTT
Found at i:63253314 original size:142 final size:142
Alignment explanation
Indices: 63253056--63253325 Score: 386
Period size: 142 Copynumber: 1.9 Consensus size: 142
63253046 AACTATTCGT
* * *
63253056 CAAGACCTACCTCACTTGGCTATCTGTAATTGTTGGTGCAAGTCATGTGCCATGGGAACTATTTA
1 CAAGACCTACCTCACTTGGCTATCCGTAATTATTGGTGCAAGTCACGTGCCATGGGAACTATTTA
* * *
63253121 GGGGTCTACTTCCATAAGTCTGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGC
66 GGGGTCTACCTCCAGAAGTCTGCAAGTAAGAATCCACAAGGATTACCTCTCAAAGAAGTAATTGC
63253186 GCAGGAGTTCAC
131 GCAGGAGTTCAC
*
63253198 CAAGACCTACCTCACTTGGCTATCCGT-ATCTATTGGTGCAAGTCACGTGCCATGGGAATTATCT
1 CAAGACCTACCTCACTTGGCTATCCGTAAT-TATTGGTGCAAGTCACGTGCCATGGGAACTAT-T
* * *
63253262 TA-GGGTCTTCCTCCAGAAGTTCT-CAAGTAAGAATCTA-AAGGGATTACGTCTCAAAGAAGTAA
64 TAGGGGTCTACCTCCAGAAG-TCTGCAAGTAAGAATCCACAA-GGATTACCTCTCAAAGAAGTAA
63253324 TT
127 TT
63253326 ACACAAGAGT
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
141 4 0.04
142 104 0.91
143 6 0.05
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (142 bp):
CAAGACCTACCTCACTTGGCTATCCGTAATTATTGGTGCAAGTCACGTGCCATGGGAACTATTTA
GGGGTCTACCTCCAGAAGTCTGCAAGTAAGAATCCACAAGGATTACCTCTCAAAGAAGTAATTGC
GCAGGAGTTCAC
Found at i:63256009 original size:38 final size:39
Alignment explanation
Indices: 63255957--63256099 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
63255947 GAATGTTCGA
63255957 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
63255996 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63256034 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63256073 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
63256100 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:63256045 original size:77 final size:79
Alignment explanation
Indices: 63255958--63256139 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
63255948 AATGTTCGAG
63255958 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
63256021 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
63256035 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
63256100 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
63256114 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63256140 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:63264055 original size:77 final size:78
Alignment explanation
Indices: 63263968--63264122 Score: 249
Period size: 77 Copynumber: 2.0 Consensus size: 78
63263958 AATGTTCGAG
63263968 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGAT-CCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCA
63264032 ATTGTGCGAGTTA
66 ATTGTGCGAGTTA
* * * *
63264045 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCGAAGGCC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCA
* *
63264110 TTTGTGCGGGTTA
66 ATTGTGCGAGTTA
63264123 CCATAAACCG
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
77 43 0.61
78 28 0.39
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGTTA
Done.