Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 219 of 345
Found at i:63543554 original size:31 final size:31
Alignment explanation
Indices: 63543521--63543628 Score: 119
Period size: 31 Copynumber: 3.5 Consensus size: 31
63543511 CAAAACTAGA
* * *
63543521 ATCAGAATCAGAATC-GAAATTAGGTGACAGA
1 ATCAAAATCAGAATCAG-AATCAGGTAACAGA
*
63543552 ATCAAAATCAGAATCAGTATCAGGTAACAGA
1 ATCAAAATCAGAATCAGAATCAGGTAACAGA
* * *
63543583 ATCAAAATTAGAATCAGTATCAGGTAATAGA
1 ATCAAAATCAGAATCAGAATCAGGTAACAGA
*
63543614 ATAAAAAATCAGAAT
1 AT-CAAAATCAGAAT
63543629 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
31 56 0.84
32 11 0.16
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.21
Consensus pattern (31 bp):
ATCAAAATCAGAATCAGAATCAGGTAACAGA
Found at i:63544066 original size:27 final size:27
Alignment explanation
Indices: 63544036--63544339 Score: 430
Period size: 27 Copynumber: 11.3 Consensus size: 27
63544026 GGGGCAAAAT
* * *
63544036 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63544063 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63544090 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63544117 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63544144 GGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63544171 AGTAAGTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63544198 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63544225 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63544252 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63544279 AGTAATTCTACCCTAC-AGGTGTATCTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
63544306 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
63544333 GGTAATT
1 GGTAATT
63544340 TTGTAAACCA
Statistics
Matches: 249, Mismatches: 26, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
26 2 0.01
27 244 0.98
28 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:63544351 original size:27 final size:27
Alignment explanation
Indices: 63544321--63544558 Score: 226
Period size: 27 Copynumber: 8.8 Consensus size: 27
63544311 TTCTACCCTA
*
63544321 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
63544348 CAAGGGTATTTTGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
63544375 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
63544402 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
63544429 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* **
63544456 CAAGGGTATTTTAGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * **
63544483 TGAGGGTATTTTAGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
63544510 CGAGGATATTTGGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
63544537 C-GGGGATACTTTGGTAATTTTA
1 CAAGGG-TATTTTGGTAATTTTA
63544559 CAAGTCGAGG
Statistics
Matches: 175, Mismatches: 35, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
26 2 0.01
27 173 0.99
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:63544365 original size:54 final size:54
Alignment explanation
Indices: 63544081--63544466 Score: 244
Period size: 54 Copynumber: 7.1 Consensus size: 54
63544071 TACCCTACAG
* ** *
63544081 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAA--TTCT-ACCCTACA
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTCTAAACC-A-A
* * * ** * *
63544134 GGGGTATTTCGGTATTTCTACCCTATAGGGGTATTTCAGTAA--GTCT-ACCCTACA
1 -GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTCTAAACC-A-A
* **
63544188 GGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAA--TTCTACCCTACAA
1 -GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTCTAAAC--CAA
* ** *
63544243 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAA--TTCT-ACCCTACA
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTCTAAACC-A-A
* * *
63544296 GGTGTATCTCAGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTGTAAACCAA
1 GG-GTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTCTAAACCAA
* ** * * *
63544351 GGGTATTTTGGTAATT-T-CACAAATCAGGGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTCGGTAATTCTAC-CCTA-CAAGGGTATTTTGGTAATTTTCTAAACCAA
* * * * *
63544405 GGGTATTTTGGTAATTTTA--TTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTCTACCCT-A-CAAGGGTATTTTGGTAATTTTCTAAACCAA
63544459 GGGTATTT
1 GGGTATTT
63544467 TAGTAATTTT
Statistics
Matches: 285, Mismatches: 33, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
51 1 0.00
52 2 0.01
53 8 0.03
54 258 0.91
55 7 0.02
56 5 0.02
57 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTCTAAACCAA
Found at i:63544463 original size:81 final size:81
Alignment explanation
Indices: 63544323--63544583 Score: 267
Period size: 81 Copynumber: 3.2 Consensus size: 81
63544313 CTACCCTACA
* * * * *
63544323 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTCACAAATCAGGGGTATTTTG
1 AGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAATCAGGGGTATTTTG
*
63544388 GTAATTTTATAAACCAG
66 GTAATTTTACAAA-CAG
** * * * *
63544405 -GGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTA
1 AGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAATCAGGGGTATTTTG
* *
63544469 GTAATTTTGCAAACTG
66 GTAATTTTACAAACAG
* * * * * *
63544485 AGGGTATTTTAGTAATTTTACAAGTCGAGGATATTTGGGTAATTTTATAAATC-GGGGATACTTT
1 AGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAATCAGGGG-TATTTT
*
63544549 GGTAATTTTACAAGTC-G
65 GGTAATTTTACAA-ACAG
**
63544566 AGGGTATTTCAGTAATTT
1 AGGGTATTTTGGTAATTT
63544584 GGTAAACTAA
Statistics
Matches: 147, Mismatches: 29, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
80 5 0.03
81 141 0.96
82 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTATAAATCAGGGGTATTTTG
GTAATTTTACAAACAG
Found at i:63544467 original size:54 final size:53
Alignment explanation
Indices: 63544323--63544557 Score: 254
Period size: 54 Copynumber: 4.4 Consensus size: 53
63544313 CTACCCTACA
*
63544323 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAATC
* * ***
63544376 AGGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTATTGATC
1 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAATC
* * *
63544430 GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGCAAACTG
1 -AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-TC
* ** ** * * * *
63544485 AGGGTATTTTAGTAATTTTACAAGTCGAGGATATTTGGGTAATTTTATAAATC
1 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAATC
* *
63544538 GGGGATACTTTGGTAATTTT
1 AGGG-TATTTTGGTAATTTT
63544558 ACAAGTCGAG
Statistics
Matches: 149, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
53 5 0.03
54 142 0.95
55 2 0.01
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.42
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAATC
Found at i:63549080 original size:10 final size:10
Alignment explanation
Indices: 63549061--63549092 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
63549051 TTTTAGGATT
63549061 TTAT-TTTAA
1 TTATCTTTAA
63549070 TTATCTTTAA
1 TTATCTTTAA
63549080 TTATCTTTAA
1 TTATCTTTAA
63549090 TTA
1 TTA
63549093 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:63553767 original size:79 final size:82
Alignment explanation
Indices: 63553650--63553834 Score: 256
Period size: 79 Copynumber: 2.3 Consensus size: 82
63553640 GCTACTCGTT
* *
63553650 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
63553713 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
63553730 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
63553793 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
63553810 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63553835 CATCATTCGA
Statistics
Matches: 94, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.61
80 34 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:63553834 original size:40 final size:40
Alignment explanation
Indices: 63553631--63553834 Score: 256
Period size: 40 Copynumber: 5.1 Consensus size: 40
63553621 TCGAATTTAA
** *
63553631 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63553671 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63553711 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63553750 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
63553790 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63553830 CCGGA
1 CCGGA
63553835 CATCATTCGA
Statistics
Matches: 144, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 96 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63561705 original size:37 final size:38
Alignment explanation
Indices: 63561664--63561798 Score: 114
Period size: 39 Copynumber: 3.5 Consensus size: 38
63561654 GGATATAATG
*
63561664 ACTCGCTCAAATGCCTTC-AC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGACTAAA-CCCGGGTT-TAGTA
* *
63561701 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTC--GACTAAACCCGGGTTTAGTA
* * * * *
63561741 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTC-GACTAAACCCGGGTTTAGTA
* *
63561780 ACTCGCACGAACGCCTTCG
1 ACTCGCACAAATGCCTTCG
63561799 GATCTTAGTC
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
37 16 0.19
38 1 0.01
39 33 0.40
40 27 0.33
41 6 0.07
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGACTAAACCCGGGTTTAGTA
Found at i:63561743 original size:40 final size:40
Alignment explanation
Indices: 63561686--63561852 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
63561676 GCCTTCACAA
63561686 AGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGACTT
1 AGCCCGGATT-TAGTAACTCGCACGAATGCCTTCGGGACTT
* * *
63561726 AACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTT
1 AGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTT
* *
63561765 AGCCCGGATTTATTAACTCGCACGAACGCCTTC-GGATCTT
1 AGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGA-CTT
* * * * *
63561805 AGTCCGGATATAGTCACTTAGCAC-AAAGCCTTCGGGACTT
1 AGCCCGGATTTAGTAAC-TCGCACGAATGCCTTCGGGACTT
63561845 AGCCCGGA
1 AGCCCGGA
63561853 CATCATTCAA
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.29
40 65 0.60
41 10 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
AGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTT
Found at i:63561787 original size:79 final size:81
Alignment explanation
Indices: 63561686--63561852 Score: 209
Period size: 79 Copynumber: 2.1 Consensus size: 81
63561676 GCCTTCACAA
* * * *
63561686 AGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAAC-TCGCA
1 AGCCCGGATTATAGTAACTCGCACGAACGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA
63561748 CAAATGCCTTCGGG-CTT
65 CAAA-GCCTTCGGGACTT
* ** *
63561765 AGCCCGGATT-TATTAACTCGCACGAACGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCAC
63561829 AAAGCCTTCGGGACTT
66 AAAGCCTTCGGGACTT
63561845 AGCCCGGA
1 AGCCCGGA
63561853 CATCATTCAA
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
78 3 0.04
79 52 0.68
80 21 0.28
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCAC
AAAGCCTTCGGGACTT
Found at i:63564894 original size:29 final size:29
Alignment explanation
Indices: 63564862--63564962 Score: 152
Period size: 29 Copynumber: 3.5 Consensus size: 29
63564852 ATAGTGAATC
63564862 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63564891 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* * *
63564920 CGCACACTTAGTGCTATAGA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
63564948 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63564963 GTACAATTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 2 0.03
28 18 0.26
29 48 0.71
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.33
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:63564972 original size:58 final size:58
Alignment explanation
Indices: 63564858--63564992 Score: 157
Period size: 58 Copynumber: 2.3 Consensus size: 58
63564848 GCATATAGTG
* * * * *
63564858 AATCCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCA
1 AATCCGCACACTTAGTGCTATAGA-TATCAACTCGCACACTTAGTGCTATAAATTTTAA
** *
63564917 GCT-CGCACACTTAGTGCTATAGA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAA
1 AATCCGCACACTTAGTGCTATAGATATC-AACTCGCACACTTAGTGCTATA-AATTTTAA
63564975 AATCCGCACACTTAGTGC
1 AATCCGCACACTTAGTGC
63564993 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
56 2 0.03
57 20 0.32
58 26 0.41
59 15 0.24
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (58 bp):
AATCCGCACACTTAGTGCTATAGATATCAACTCGCACACTTAGTGCTATAAATTTTAA
Found at i:63564986 original size:31 final size:29
Alignment explanation
Indices: 63564862--63564992 Score: 140
Period size: 29 Copynumber: 4.5 Consensus size: 29
63564852 ATAGTGAATC
* * *
63564862 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTAAACT
* * *
63564891 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTAAACT
*
63564920 CGCACACTTAGTGCTATAGAA--TCAAACT
1 CGCACACTTAGTGCTATA-AATTTTAAACT
* *
63564948 CGCACACTTAGTGCTGTACAATTTTAAAAT
1 CGCACACTTAGTGCTATA-AATTTTAAACT
63564978 CCGCACACTTAGTGC
1 -CGCACACTTAGTGC
63564993 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
28 23 0.26
29 47 0.52
30 6 0.07
31 14 0.16
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATAAATTTTAAACT
Found at i:63572917 original size:29 final size:29
Alignment explanation
Indices: 63572885--63573013 Score: 156
Period size: 29 Copynumber: 4.5 Consensus size: 29
63572875 ATAGTGAATC
*
63572885 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
63572914 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
* *
63572943 CGCACACTTAGTGCTATAGA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * *
63572971 CGCACACTTAGTGCTGTACAATTTTAAAC-
1 CGCACACTTAGTGCTATA-TATTTTCAACT
63573000 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63573014 CAATCTTGTC
Statistics
Matches: 89, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
27 2 0.02
28 20 0.22
29 63 0.71
30 3 0.03
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:63573004 original size:57 final size:56
Alignment explanation
Indices: 63572884--63573013 Score: 154
Period size: 57 Copynumber: 2.3 Consensus size: 56
63572874 TATAGTGAAT
* * * * * *
63572884 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAG
1 CCGCACACTTAGTGCTATAGA-TATCAACTCGCACACTTAGTGCTATAAATTTTAAA
*
63572941 CTCGCACACTTAGTGCTATAGA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAA
1 C-CGCACACTTAGTGCTATAGATATC-AACTCGCACACTTAGTGCTATA-AATTTTAAA
63572999 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
63573014 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
56 2 0.03
57 35 0.56
58 26 0.41
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (56 bp):
CCGCACACTTAGTGCTATAGATATCAACTCGCACACTTAGTGCTATAAATTTTAAA
Found at i:63581085 original size:40 final size:39
Alignment explanation
Indices: 63580902--63581091 Score: 179
Period size: 40 Copynumber: 4.8 Consensus size: 39
63580892 GGATATAACG
* ** *
63580902 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
63580942 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* *
63580982 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
63581021 ACTCGC-GAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
63581059 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
63581092 CATCATTCAA
Statistics
Matches: 122, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
36 2 0.02
37 6 0.05
38 18 0.15
39 26 0.21
40 65 0.53
41 5 0.04
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:63584214 original size:40 final size:40
Alignment explanation
Indices: 63584151--63584392 Score: 248
Period size: 40 Copynumber: 6.1 Consensus size: 40
63584141 TAGAATTTAA
** *
63584151 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63584191 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63584231 CCGGTTTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63584270 CCGGA-ATTAGTAACTCACACAAATGCCTTC-GG-CTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63584308 CC-GAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
63584348 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
*
63584388 TCGGA
1 CCGGA
63584393 CATCATTCGA
Statistics
Matches: 175, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
37 2 0.01
38 36 0.21
39 31 0.18
40 92 0.53
41 14 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63585649 original size:11 final size:11
Alignment explanation
Indices: 63585625--63585657 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
63585615 ACATGAGAGC
63585625 TTTTCTCTTCTT
1 TTTTCT-TTCTT
63585637 TTTT-TTTCTT
1 TTTTCTTTCTT
63585647 TTTTCTTTCTT
1 TTTTCTTTCTT
63585658 CTATTCACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.45
11 7 0.35
12 4 0.20
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTCTTTCTT
Found at i:63592874 original size:15 final size:15
Alignment explanation
Indices: 63592854--63592883 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63592844 CATTTTATTT
*
63592854 ATATTAGGATAATTA
1 ATATTAAGATAATTA
63592869 ATATTAAGATAATTA
1 ATATTAAGATAATTA
63592884 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:63592911 original size:27 final size:26
Alignment explanation
Indices: 63592850--63592912 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
63592840 ACTCCATTTT
63592850 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
63592877 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
63592905 ATTTTATT
1 ATTTTATT
63592913 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:63594192 original size:30 final size:30
Alignment explanation
Indices: 63594099--63594185 Score: 120
Period size: 30 Copynumber: 2.9 Consensus size: 30
63594089 AGACAAGGGT
* *
63594099 GTGTCTCATGGCCGTGTATGTCACACGGGC
1 GTGTCTCTTGGCCGTGTGTGTCACACGGGC
* * * *
63594129 ATGTCTCTTGGCTGTGTGCGTCACATGGGC
1 GTGTCTCTTGGCCGTGTGTGTCACACGGGC
63594159 GTGTCTCTTGGCCGTGTGTGTCACACG
1 GTGTCTCTTGGCCGTGTGTGTCACACG
63594186 ACCGTGTGAC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.10, C:0.25, G:0.33, T:0.31
Consensus pattern (30 bp):
GTGTCTCTTGGCCGTGTGTGTCACACGGGC
Found at i:63596938 original size:176 final size:177
Alignment explanation
Indices: 63596637--63596987 Score: 650
Period size: 176 Copynumber: 2.0 Consensus size: 177
63596627 AACATAGACT
*
63596637 AACTATTTCAATTCAAATCTCGAGAAAAATAGGGATCAAATTAATTTAGGGGATTTCAACAATAA
1 AACTATTTCAATTCAAATCTCGACAAAAATAGGGATCAAATTAATTTAGGGGATTTCAACAATAA
63596702 TGGGTTAAGGGTTAATATTAAGGGTAATACAAGAAATGGTTTGTTAGGCTCAAGGGGGTTTACTA
66 TGGGTTAAGGGTTAATATTAAGGGTAATACAAGAAATGGTTTGTTAGGCTCAAGGGGGTTTACTA
63596767 GGGATTAATCGTGGAGGTAGGCTTTTCATGGAATGAGTGGGTTAAGC
131 GGGATTAATCGTGGAGGTAGGCTTTTCATGGAATGAGTGGGTTAAGC
*
63596814 AACTATTTCAATTCAAATCTCGACAAAAATTGGGATCAAATTAATTTAGGGGATTTCAACAAT-A
1 AACTATTTCAATTCAAATCTCGACAAAAATAGGGATCAAATTAATTTAGGGGATTTCAACAATAA
*
63596878 TGGGTTAAGGGTTAATATTAAGGGTAATACAAGAAATGGTTTGTTAGGCTCAATGGGGTTTACTA
66 TGGGTTAAGGGTTAATATTAAGGGTAATACAAGAAATGGTTTGTTAGGCTCAAGGGGGTTTACTA
* *
63596943 GGGGTTAATCGTGGAGGTAGGCTTTTCATGGCATGAGTGGGTTAA
131 GGGATTAATCGTGGAGGTAGGCTTTTCATGGAATGAGTGGGTTAA
63596988 TCCTAAGTGC
Statistics
Matches: 169, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
176 108 0.64
177 61 0.36
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.31
Consensus pattern (177 bp):
AACTATTTCAATTCAAATCTCGACAAAAATAGGGATCAAATTAATTTAGGGGATTTCAACAATAA
TGGGTTAAGGGTTAATATTAAGGGTAATACAAGAAATGGTTTGTTAGGCTCAAGGGGGTTTACTA
GGGATTAATCGTGGAGGTAGGCTTTTCATGGAATGAGTGGGTTAAGC
Found at i:63597922 original size:5 final size:5
Alignment explanation
Indices: 63597914--63597956 Score: 52
Period size: 5 Copynumber: 8.2 Consensus size: 5
63597904 AAAGTAGTCT
63597914 TAAAA TAAAA TAAAA GTAAAA -AAAA TAAAA TAATAAA TAAAA T
1 TAAAA TAAAA TAAAA -TAAAA TAAAA TAAAA T-A-AAA TAAAA T
63597957 TTTTTAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 4 0.12
5 19 0.56
6 7 0.21
7 4 0.12
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:63597955 original size:20 final size:20
Alignment explanation
Indices: 63597915--63597955 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
63597905 AAGTAGTCTT
*
63597915 AAAATAAAATAAAAGTAAAA
1 AAAATAAAATAAAAATAAAA
63597935 AAAATAAAATAATAAATAAAA
1 AAAATAAAATAA-AAATAAAA
63597956 TTTTTTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (20 bp):
AAAATAAAATAAAAATAAAA
Found at i:63604187 original size:9 final size:10
Alignment explanation
Indices: 63604162--63604188 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
63604152 TAAGTATGGG
63604162 GTAAAAATAT
1 GTAAAAATAT
63604172 GTAAAAATAT
1 GTAAAAATAT
63604182 GTAAAAA
1 GTAAAAA
63604189 AAAATTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (10 bp):
GTAAAAATAT
Found at i:63621625 original size:43 final size:43
Alignment explanation
Indices: 63621578--63621673 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 43
63621568 ACTAGGCTTG
*
63621578 AAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCCCA
1 AAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCA
* * **
63621621 AAGCCTGATATTATCTCACCGGCATTATAGCCTGCTAGGCCTG
1 AAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCA
63621664 AAGCCCGATA
1 AAGCCCGATA
63621674 ATATTATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (43 bp):
AAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCA
Found at i:63621704 original size:44 final size:45
Alignment explanation
Indices: 63621593--63621714 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 45
63621583 CGATATCATT
* * * *
63621593 TCACCGGCATTATAGCCTGCTAGGCCCAAAG-CC--TGATATTATC
1 TCACCAGCATTAAAGCCTGCTAGG-CCGAAGCCCGATAATATTATC
* *
63621636 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATAATATTAT-
1 TCACCAGCATTAAAGCCTGCTAGGCC-GAAGCCCGATAATATTATC
* *
63621681 TCACCAGC-TTAAAGCTTGCTAGGCCGAGGCCCGA
1 TCACCAGCATTAAAGCCTGCTAGGCCGAAGCCCGA
63621715 ATATCACATT
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.03
43 35 0.51
44 17 0.25
45 7 0.10
46 8 0.12
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCAGCATTAAAGCCTGCTAGGCCGAAGCCCGATAATATTATC
Found at i:63624717 original size:40 final size:40
Alignment explanation
Indices: 63624658--63624799 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
63624648 AAATTGAATG
* * *
63624658 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
63624698 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
63624738 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
63624778 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
63624800 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:63624800 original size:40 final size:39
Alignment explanation
Indices: 63624697--63624825 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
63624687 TGCTGGAAAT
* * *
63624697 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
63624737 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
63624777 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
63624817 TATATCCGG
1 TATATCCGG
63624826 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:63632738 original size:40 final size:40
Alignment explanation
Indices: 63632679--63632820 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
63632669 AAATTGAATG
* * *
63632679 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
63632719 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
63632759 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
63632799 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
63632821 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:63632821 original size:40 final size:39
Alignment explanation
Indices: 63632718--63632846 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
63632708 TGCTGGAAAT
* * *
63632718 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
63632758 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
63632798 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
63632838 TATATCCGG
1 TATATCCGG
63632847 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:63634862 original size:14 final size:15
Alignment explanation
Indices: 63634833--63634862 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63634823 CAAAATTTAG
63634833 ACATGATACTTTCAC
1 ACATGATACTTTCAC
63634848 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
63634862 A
1 A
63634863 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:63635892 original size:55 final size:53
Alignment explanation
Indices: 63635759--63635963 Score: 180
Period size: 55 Copynumber: 3.8 Consensus size: 53
63635749 TTCCTTTTTA
* * *
63635759 AACTTACCATTGCCATGTCTTGACATGGTCTT--ATGGTATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * *
63635810 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * *** * *
63635864 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * * * *
63635919 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
63635964 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
51 29 0.23
53 16 0.13
54 38 0.31
55 41 0.33
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:63642051 original size:40 final size:40
Alignment explanation
Indices: 63642006--63642172 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63641996 CGGAATATAA
63642006 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63642046 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
63642086 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63642126 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63642165 CCGGATAT
1 CCGGATAT
63642173 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63650068 original size:40 final size:40
Alignment explanation
Indices: 63650023--63650190 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63650013 CGGAATATAA
63650023 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63650063 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
63650103 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
63650143 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63650183 CCGGATAT
1 CCGGATAT
63650191 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63652027 original size:41 final size:45
Alignment explanation
Indices: 63651956--63652075 Score: 131
Period size: 45 Copynumber: 2.8 Consensus size: 45
63651946 ATGCTACCTC
* * ** * *
63651956 ATATCGATGCCACTATCCCAGACAGGGTCTTACACA-AATC-TA-
1 ATATCGATGCCAATGTCCCAGACATAGTCTTACACATAACCACAT
* *
63651998 ATA-CGATTCCAATGTCCTAGACATAGTCTTACACATAACCACAT
1 ATATCGATGCCAATGTCCCAGACATAGTCTTACACATAACCACAT
*
63652042 ATATCGATGCCAATGTCCCAGACATGGTCTTACA
1 ATATCGATGCCAATGTCCCAGACATAGTCTTACA
63652076 TGAAAACATA
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
41 26 0.41
42 6 0.10
43 1 0.02
44 3 0.05
45 27 0.43
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACATAGTCTTACACATAACCACAT
Found at i:63652065 original size:45 final size:42
Alignment explanation
Indices: 63651922--63652075 Score: 143
Period size: 41 Copynumber: 3.6 Consensus size: 42
63651912 TCATACAATT
* *
63651922 CCAACGTCCCAGACATGGTCTTACATGC-TACCTC-ATATCGATG
1 CCAATGTCCCAGACATGGTCTTACA--CAAACC-CAATATCGATG
* * * * * *
63651965 CCACTATCCCAGACAGGGTCTTACACAAATCTAATA-CGATT
1 CCAATGTCCCAGACATGGTCTTACACAAACCCAATATCGATG
* *
63652006 CCAATGTCCTAGACATAGTCTTACACATAACCACATATATCGATG
1 CCAATGTCCCAGACATGGTCTTACACA-AACC-CA-ATATCGATG
63652051 CCAATGTCCCAGACATGGTCTTACA
1 CCAATGTCCCAGACATGGTCTTACA
63652076 TGAAAACATA
Statistics
Matches: 87, Mismatches: 18, Indels: 10
0.76 0.16 0.09
Matches are distributed among these distances:
41 27 0.31
42 8 0.09
43 22 0.25
44 3 0.03
45 27 0.31
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACACAAACCCAATATCGATG
Found at i:63653234 original size:14 final size:15
Alignment explanation
Indices: 63653217--63653245 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63653207 TCACAAAAAT
63653217 TTCACACAT-ATAAA
1 TTCACACATAATAAA
63653231 TTCACACATAATAAA
1 TTCACACATAATAAA
63653246 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:63654848 original size:6 final size:6
Alignment explanation
Indices: 63654803--63654874 Score: 58
Period size: 6 Copynumber: 11.7 Consensus size: 6
63654793 ACAATCTGTT
* * * *
63654803 GAAAAA GCAAAA GAACAA GAACAA GAAAAA -AAGAAT GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAA-AAA GAAAAA GAAAAA
63654851 G-AAAA GAAAATCGA GAAAAA GAAA
1 GAAAAA GAAAA---A GAAAAA GAAA
63654875 GGAAAAACTG
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
5 7 0.13
6 39 0.72
7 2 0.04
9 6 0.11
ACGTcount: A:0.74, C:0.06, G:0.18, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:63654870 original size:21 final size:21
Alignment explanation
Indices: 63654844--63654890 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
63654834 AGAATGAAAA
*
63654844 AGAAAAAGAAAAGAAAATC-G
1 AGAAAAAGAAAAGAAAAACTG
*
63654864 AGAAAAAGAAAGGAAAAACTG
1 AGAAAAAGAAAAGAAAAACTG
63654885 AGAAAA
1 AGAAAA
63654891 GTGAGGCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.70, C:0.04, G:0.21, T:0.04
Consensus pattern (21 bp):
AGAAAAAGAAAAGAAAAACTG
Found at i:63657897 original size:13 final size:14
Alignment explanation
Indices: 63657879--63657915 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
63657869 ACCTCTTGTA
*
63657879 AAAAGAAAATGA-G
1 AAAAGAAAAAGACG
63657892 AAAAGAAAAAGACG
1 AAAAGAAAAAGACG
63657906 AAAAGAAAAA
1 AAAAGAAAAA
63657916 AGAGATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.76, C:0.03, G:0.19, T:0.03
Consensus pattern (14 bp):
AAAAGAAAAAGACG
Found at i:63657901 original size:14 final size:13
Alignment explanation
Indices: 63657879--63657945 Score: 62
Period size: 14 Copynumber: 4.7 Consensus size: 13
63657869 ACCTCTTGTA
*
63657879 AAAAGAAAATGAG
1 AAAAGAAAAAGAG
63657892 AAAAGAAAAAGACG
1 AAAAGAAAAAGA-G
63657906 AAAAGAAAAAAGAG
1 AAAAG-AAAAAGAG
63657920 ATCAAAAGAAAAGAGAG
1 ---AAAAGAAAA-AGAG
*
63657937 GAAAGAAAA
1 AAAAGAAAA
63657946 GATTATGAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
13 11 0.24
14 15 0.33
15 7 0.15
16 4 0.09
17 9 0.20
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (13 bp):
AAAAGAAAAAGAG
Found at i:63658015 original size:19 final size:20
Alignment explanation
Indices: 63657983--63658023 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
63657973 GAATGAAATC
63657983 GAGAGAAGAAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
63658003 GAGAGAA-AAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
63658022 GA
1 GA
63658024 AAGTGAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (20 bp):
GAGAGAAGAAACAAAGAAAA
Found at i:63660082 original size:10 final size:10
Alignment explanation
Indices: 63660069--63660104 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
63660059 AACTCAATTC
63660069 AGCTCATTTG
1 AGCTCATTTG
*
63660079 AGCTCATTTC
1 AGCTCATTTG
*
63660089 AGCTCGTTTG
1 AGCTCATTTG
63660099 AGCTCA
1 AGCTCA
63660105 ACCAAGCTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (10 bp):
AGCTCATTTG
Found at i:63660084 original size:20 final size:20
Alignment explanation
Indices: 63660061--63660105 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
63660051 CTCCGTCCAA
63660061 CTCAATTCAGCTCATTTGAG
1 CTCAATTCAGCTCATTTGAG
* *
63660081 CTCATTTCAGCTCGTTTGAG
1 CTCAATTCAGCTCATTTGAG
63660101 CTCAA
1 CTCAA
63660106 CCAAGCTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.36
Consensus pattern (20 bp):
CTCAATTCAGCTCATTTGAG
Found at i:63660887 original size:55 final size:55
Alignment explanation
Indices: 63660823--63660935 Score: 183
Period size: 55 Copynumber: 2.1 Consensus size: 55
63660813 CAATGGAGAT
* *
63660823 GTAGGAGTATTAAAGGGT-TGCACATTCATGAACTATGGCTTTTCTTCTAGGCTAA
1 GTAGGAGTATTAAA-GATCTACACATTCATGAACTATGGCTTTTCTTCTAGGCTAA
*
63660878 GTAGGAGTATTAAAGATCTACATATTCATGAACTATGGCTTTTCTTCTAGGCTAA
1 GTAGGAGTATTAAAGATCTACACATTCATGAACTATGGCTTTTCTTCTAGGCTAA
63660933 GTA
1 GTA
63660936 TGCATGAATG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 2 0.04
55 52 0.96
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (55 bp):
GTAGGAGTATTAAAGATCTACACATTCATGAACTATGGCTTTTCTTCTAGGCTAA
Found at i:63663072 original size:28 final size:28
Alignment explanation
Indices: 63663007--63663107 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63662997 ATAGTGAATC
*
63663007 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
63663036 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
63663064 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
63663094 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63663108 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63671161 original size:42 final size:43
Alignment explanation
Indices: 63671053--63671210 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
63671043 AGCTCGTACA
* ***
63671053 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACAAAATCAAATATCG
* * *
63671096 ATGCCACTGTCCCAAACAGGGTCTTACACAAAATCATATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACACAAAATCAAATATCG
* *
63671138 ATGTCGA-TGTCCCAGACATGGTCTTACACATAAATCTCAA-ATCG
1 ATG-CCACTGTCCCAGACATGGTCTTACACA-AAATC-AAATATCG
* *
63671182 ATTCCAAC-GTCCCAAACATGGTCTTACAC
1 ATGCC-ACTGTCCCAGACATGGTCTTACAC
63671211 GATAACACAT
Statistics
Matches: 93, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.30
43 39 0.42
44 26 0.28
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACAAAATCAAATATCG
Found at i:63672705 original size:19 final size:19
Alignment explanation
Indices: 63672666--63672702 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63672656 TAATATAGCC
*
63672666 ATTTAATTTGTCTTGAGTT
1 ATTTAATCTGTCTTGAGTT
63672685 ATTTAATCTGTCTT-AGTT
1 ATTTAATCTGTCTTGAGTT
63672703 TATACAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.22, C:0.08, G:0.14, T:0.57
Consensus pattern (19 bp):
ATTTAATCTGTCTTGAGTT
Found at i:63673909 original size:16 final size:17
Alignment explanation
Indices: 63673877--63673909 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
63673867 AATATCATAG
*
63673877 ATTAAATTGTGATGTTA
1 ATTAAATTGTAATGTTA
63673894 ATTAAATTG-AATGTTA
1 ATTAAATTGTAATGTTA
63673910 TAGTTGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (17 bp):
ATTAAATTGTAATGTTA
Found at i:63689222 original size:17 final size:17
Alignment explanation
Indices: 63689200--63689235 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
63689190 CTTGCATACG
63689200 AGCTTACTAAGCTATAT
1 AGCTTACTAAGCTATAT
63689217 AGCTTACTAAGCTATAT
1 AGCTTACTAAGCTATAT
63689234 AG
1 AG
63689236 TGTCGCCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (17 bp):
AGCTTACTAAGCTATAT
Found at i:63689663 original size:15 final size:17
Alignment explanation
Indices: 63689633--63689664 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
63689623 TTGATACTTG
63689633 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
63689650 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
63689665 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:63693727 original size:15 final size:15
Alignment explanation
Indices: 63693707--63693740 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
63693697 TAATTGATGT
63693707 TTGATTTATGGTATA
1 TTGATTTATGGTATA
63693722 TTGATTTATGGTATA
1 TTGATTTATGGTATA
63693737 TTGA
1 TTGA
63693741 CGAGTGTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (15 bp):
TTGATTTATGGTATA
Found at i:63695613 original size:40 final size:40
Alignment explanation
Indices: 63695518--63695663 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
63695508 TGAATGATAC
* * *
63695518 CCGGGCTAAGCCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAAT
* * * *
63695559 CCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAT
* * *
63695599 CCGGGTTAAGTCCCGAAGGCATTTGTGCAAGCTATTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AAT
* *
63695639 CCGGGCTATGTCCCGAAGGCTTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63695664 AGCGAGTCGC
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 63 0.71
41 26 0.29
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAT
Found at i:63695670 original size:80 final size:81
Alignment explanation
Indices: 63695518--63695670 Score: 188
Period size: 80 Copynumber: 1.9 Consensus size: 81
63695508 TGAATGATAC
* *
63695518 CCGGGCTAAGCCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAATTCCCGAAGGCATTT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGCTAATTCCCGAAGGCATTT
*
63695583 GTGCGAGTTACCAAAT
66 GAGCGAGTTACCAAAT
* * * *
63695599 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGCT-ATTATAA-CCGGGCT-ATGTCCCGAAGGCT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAAG-TGACTA-AATCCGGGCTAAT-TCCCGAAGGCA
63695660 TTTGAGCGAGT
63 TTTGAGCGAGT
63695671 CGCCATATCC
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 2 0.03
80 32 0.52
81 28 0.45
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGCCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGCTAATTCCCGAAGGCATTT
GAGCGAGTTACCAAAT
Found at i:63703633 original size:41 final size:40
Alignment explanation
Indices: 63703571--63703671 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
63703561 ATACCCGAGC
* * *
63703571 TAAGCCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-AAGTGACCAAATCCGGGT
* * * *
63703612 TAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCAAGTGACCAAATCCGGGT
63703652 TAAGTCCCGAAGGCATTTGT
1 TAAGTCCCGAAGGCATTTGT
63703672 ATGAGCTATT
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
40 33 0.65
41 18 0.35
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCAAGTGACCAAATCCGGGT
Found at i:63703690 original size:40 final size:40
Alignment explanation
Indices: 63703602--63703710 Score: 112
Period size: 40 Copynumber: 2.7 Consensus size: 40
63703592 CTAAGTGACT
* * * *
63703602 AAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACC
1 AAATCCGGGTTAAGTCCCGAAGGCATTTGTACGAGCTACC
* **
63703642 AAATCCGGGTTAAGTCCCGAAGGCATTTGTATGAGCTATT
1 AAATCCGGGTTAAGTCCCGAAGGCATTTGTACGAGCTACC
* * *
63703682 ATAA-CCGGGCTATGTCCCGAAGGCTTTTG
1 A-AATCCGGGTTAAGTCCCGAAGGCATTTG
63703711 AGCGAGTCGC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
AAATCCGGGTTAAGTCCCGAAGGCATTTGTACGAGCTACC
Found at i:63705364 original size:54 final size:54
Alignment explanation
Indices: 63705300--63705444 Score: 290
Period size: 54 Copynumber: 2.7 Consensus size: 54
63705290 AATGTAGCTA
63705300 TAATGGGTAAGTAAAGTATGTAAAACCGAGTAATTAATGTAGCTATTTCAAGTT
1 TAATGGGTAAGTAAAGTATGTAAAACCGAGTAATTAATGTAGCTATTTCAAGTT
63705354 TAATGGGTAAGTAAAGTATGTAAAACCGAGTAATTAATGTAGCTATTTCAAGTT
1 TAATGGGTAAGTAAAGTATGTAAAACCGAGTAATTAATGTAGCTATTTCAAGTT
63705408 TAATGGGTAAGTAAAGTATGTAAAACCGAGTAATTAA
1 TAATGGGTAAGTAAAGTATGTAAAACCGAGTAATTAA
63705445 AACGAATTTT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.32
Consensus pattern (54 bp):
TAATGGGTAAGTAAAGTATGTAAAACCGAGTAATTAATGTAGCTATTTCAAGTT
Found at i:63706626 original size:46 final size:47
Alignment explanation
Indices: 63706570--63706671 Score: 197
Period size: 47 Copynumber: 2.2 Consensus size: 47
63706560 GACTACCAAT
63706570 GTCGCGACACACCTTGAAA-TTTTGGATTCTGGGGTAAACTAACTTC
1 GTCGCGACACACCTTGAAATTTTTGGATTCTGGGGTAAACTAACTTC
63706616 GTCGCGACACACCTTGAAATTTTTGGATTCTGGGGTAAACTAACTTC
1 GTCGCGACACACCTTGAAATTTTTGGATTCTGGGGTAAACTAACTTC
63706663 GTCGCGACA
1 GTCGCGACA
63706672 TTGAGCTGAA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 19 0.35
47 36 0.65
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (47 bp):
GTCGCGACACACCTTGAAATTTTTGGATTCTGGGGTAAACTAACTTC
Found at i:63718550 original size:18 final size:19
Alignment explanation
Indices: 63718523--63718561 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
63718513 AATAAATCCT
*
63718523 AACTACAAAAGAAAACTAA
1 AACTACAAAACAAAACTAA
63718542 AACTA-AAAACAAAACTAA
1 AACTACAAAACAAAACTAA
63718560 AA
1 AA
63718562 GGAAAATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.72, C:0.15, G:0.03, T:0.10
Consensus pattern (19 bp):
AACTACAAAACAAAACTAA
Found at i:63718567 original size:18 final size:18
Alignment explanation
Indices: 63718529--63718567 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
63718519 TCCTAACTAC
* *
63718529 AAAAGAAAACTAAAACTA
1 AAAACAAAACTAAAACGA
*
63718547 AAAACAAAACTAAAAGGA
1 AAAACAAAACTAAAACGA
63718565 AAA
1 AAA
63718568 TTCTAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.74, C:0.10, G:0.08, T:0.08
Consensus pattern (18 bp):
AAAACAAAACTAAAACGA
Found at i:63722151 original size:15 final size:15
Alignment explanation
Indices: 63722105--63722139 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
63722095 ATATTTTTGG
*
63722105 TTATTGTTATTAATT
1 TTATTATTATTAATT
*
63722120 TTATTATTATTACTT
1 TTATTATTATTAATT
63722135 TTATT
1 TTATT
63722140 TCTATTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (15 bp):
TTATTATTATTAATT
Found at i:63722163 original size:21 final size:21
Alignment explanation
Indices: 63722117--63722157 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
63722107 ATTGTTATTA
63722117 ATTT-TATTATTATTACTTTT
1 ATTTCTATTATTATTACTTTT
*
63722137 ATTTCTATTATTTTTTACTTT
1 ATTTCTATTA-TTATTACTTT
63722158 CTTTCTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 5 0.28
22 9 0.50
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTCTATTATTATTACTTTT
Found at i:63722885 original size:21 final size:21
Alignment explanation
Indices: 63722861--63722914 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
63722851 CGGCCTGTTT
63722861 ACACGGTCGTGTCCCTGCTTC
1 ACACGGTCGTGTCCCTGCTTC
*
63722882 ACACGGTCGTATCCCTGCTTC
1 ACACGGTCGTGTCCCTGCTTC
63722903 ACACAGG-CGTGT
1 ACAC-GGTCGTGT
63722915 GCCTCTACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.15, C:0.35, G:0.24, T:0.26
Consensus pattern (21 bp):
ACACGGTCGTGTCCCTGCTTC
Found at i:63726285 original size:20 final size:19
Alignment explanation
Indices: 63726249--63726299 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
63726239 AAGGGCTATT
*
63726249 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
63726268 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
63726288 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
63726300 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:63727205 original size:49 final size:49
Alignment explanation
Indices: 63727125--63727256 Score: 160
Period size: 49 Copynumber: 2.7 Consensus size: 49
63727115 TTGTTGTGTG
* *
63727125 TCAGTGTAAGACCTGTCTAGGACATGGCATCGACACT-GATAGATG-AGA
1 TCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAA
* * * * *
63727173 GCTAGTGTAAGACCTGTCTGGGACACGACATCGGCCTCGATATATGAAAA
1 TC-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAA
*
63727223 TCAGTGTAAAACCTGTCTGGGACATGGCATCGAC
1 TCAGTGTAAGACCTGTCTGGGACATGGCATCGAC
63727257 TTTGATGTAC
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
48 3 0.04
49 63 0.91
50 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
TCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAA
Found at i:63727242 original size:142 final size:138
Alignment explanation
Indices: 63726988--63727245 Score: 340
Period size: 142 Copynumber: 1.8 Consensus size: 138
63726978 AATTGAGACC
* *
63726988 CAGTGTAAGACATGTCTGGAACATGCATCGGCATTGAGACGAGAGCTAATGTAAGACATGTCTGG
1 CAGTGTAAGACATGTCTGGAACATGCATCGACACTGAGACGAGAGCTAATGTAAGACATGTCTGG
* * *
63727053 GACATGCATCGGCCTCAAGATATACAAGCTAGTGTAAGACCTGTCTGGGACCTGGTGTCAGCTTG
66 GACACGCATCGGCCTCAAGATATAAAAGCTAGTGTAAAACCTGTCTGGGACCTGGTGTCAGCTTG
63727118 TTGTGTGT
131 TTGTGTGT
* * * *
63727126 CAGTGTAAGACCTGTCTAGG-ACATGGCATCGACACTGATAGATGAGAGCTAGTGTAAGACCTGT
1 CAGTGTAAGACATGTCT-GGAACAT-GCATCGACACTG--AGACGAGAGCTAATGTAAGACATGT
* * *
63727190 CTGGGACACGACATCGGCCTCGATATATGAAAATC-AGTGTAAAACCTGTCTGGGAC
62 CTGGGACACG-CATCGGCCTCAAGATAT-AAAAGCTAGTGTAAAACCTGTCTGGGAC
63727246 ATGGCATCGA
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
138 20 0.20
139 12 0.12
141 31 0.30
142 35 0.34
143 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (138 bp):
CAGTGTAAGACATGTCTGGAACATGCATCGACACTGAGACGAGAGCTAATGTAAGACATGTCTGG
GACACGCATCGGCCTCAAGATATAAAAGCTAGTGTAAAACCTGTCTGGGACCTGGTGTCAGCTTG
TTGTGTGT
Found at i:63728459 original size:65 final size:65
Alignment explanation
Indices: 63728352--63728482 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
63728342 AGTCCCATGC
63728352 ATCAGATAATAATAACATGGCATGAAGTAAATAGTAACAGTCAAACACGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGAAGTAAATAGTAACAGTCAAACACGCATTCAGGTCAACCTT
* * *
63728417 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGAAGTAAATAGTAACAGTCAAACACGCATTCAGGTCAACCTT
63728482 A
1 A
63728483 ACCTTAGGGG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGAAGTAAATAGTAACAGTCAAACACGCATTCAGGTCAACCTT
Found at i:63730638 original size:25 final size:25
Alignment explanation
Indices: 63730604--63730656 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
63730594 AGGAAAGTGA
63730604 GTAAGTTATGCTTATGACCATCCAT
1 GTAAGTTATGCTTATGACCATCCAT
63730629 GTAAGTTATGCTTATGACCATCCAT
1 GTAAGTTATGCTTATGACCATCCAT
63730654 GTA
1 GTA
63730657 TTTTACATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (25 bp):
GTAAGTTATGCTTATGACCATCCAT
Found at i:63732079 original size:14 final size:14
Alignment explanation
Indices: 63732060--63732087 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63732050 AATGGTTAAA
63732060 CATGAGTGCTTGAT
1 CATGAGTGCTTGAT
63732074 CATGAGTGCTTGAT
1 CATGAGTGCTTGAT
63732088 GTATAAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (14 bp):
CATGAGTGCTTGAT
Found at i:63744552 original size:190 final size:190
Alignment explanation
Indices: 63744229--63744609 Score: 744
Period size: 190 Copynumber: 2.0 Consensus size: 190
63744219 ATAATTGAGA
63744229 TGGCGAGAGCTGTAAGCAAGCAAAAGTGTAACCTGTATATTAGAGCTCGGTAACCTCTTGTATTG
1 TGGCGAGAGCTGTAAGCAAGCAAAAGTGTAACCTGTATATTAGAGCTCGGTAACCTCTTGTATTG
63744294 AGACATAGATGATAGCTTACAACACTAGCAACATCATAGTCATAATCCATGCTTTTGTTACATCT
66 AGACATAGATGATAGCTTACAACACTAGCAACATCATAGTCATAATCCATGCTTTTGTTACATCT
*
63744359 TACCCATTCTTTGATTGTTCCCTGGTATTCAACATCAACAATTCATTAATTTAACTTAGC
131 TACCCATTCTTTGATTGTTCCCTGGTATTCAACATCAACAAGTCATTAATTTAACTTAGC
*
63744419 TGGCGAGTGCTGTAAGCAAGCAAAAGTGTAACCTGTATATTAGAGCTCGGTAACCTCTTGTATTG
1 TGGCGAGAGCTGTAAGCAAGCAAAAGTGTAACCTGTATATTAGAGCTCGGTAACCTCTTGTATTG
63744484 AGACATAGATGATAGCTTACAACACTAGCAACATCATAGTCATAATCCATGCTTTTGTTACATCT
66 AGACATAGATGATAGCTTACAACACTAGCAACATCATAGTCATAATCCATGCTTTTGTTACATCT
63744549 TACCCATTCTTTGATTGTTCCCTGGTATTCAACATCAACAAGTCATTAATTTAACTTAGC
131 TACCCATTCTTTGATTGTTCCCTGGTATTCAACATCAACAAGTCATTAATTTAACTTAGC
63744609 T
1 T
63744610 AAGTTACCTG
Statistics
Matches: 189, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
190 189 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (190 bp):
TGGCGAGAGCTGTAAGCAAGCAAAAGTGTAACCTGTATATTAGAGCTCGGTAACCTCTTGTATTG
AGACATAGATGATAGCTTACAACACTAGCAACATCATAGTCATAATCCATGCTTTTGTTACATCT
TACCCATTCTTTGATTGTTCCCTGGTATTCAACATCAACAAGTCATTAATTTAACTTAGC
Found at i:63761455 original size:15 final size:15
Alignment explanation
Indices: 63761435--63761473 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
63761425 TGACGACAAA
63761435 TTTCTTTTCCATTTT
1 TTTCTTTTCCATTTT
**
63761450 TTTCTTTGACATTTT
1 TTTCTTTTCCATTTT
*
63761465 TATCTTTTC
1 TTTCTTTTC
63761474 TATAAACCTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.10, C:0.18, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTCTTTTCCATTTT
Found at i:63765789 original size:26 final size:27
Alignment explanation
Indices: 63765753--63765807 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
63765743 AAGACACATA
63765753 AAGGGAATTATCCAACGCATGAT-TTG
1 AAGGGAATTATCCAACGCATGATCTTG
*
63765779 AAGGGAATTATCCAATGCATGATCTTG
1 AAGGGAATTATCCAACGCATGATCTTG
63765806 AA
1 AA
63765808 TTGGCTGCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (27 bp):
AAGGGAATTATCCAACGCATGATCTTG
Found at i:63767376 original size:20 final size:20
Alignment explanation
Indices: 63767351--63767388 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
63767341 TCTTTTTTCC
63767351 TGAAATGGATCCTGGGGGCT
1 TGAAATGGATCCTGGGGGCT
63767371 TGAAATGGATCCTGGGGG
1 TGAAATGGATCCTGGGGG
63767389 AAGAGTGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.13, G:0.42, T:0.24
Consensus pattern (20 bp):
TGAAATGGATCCTGGGGGCT
Found at i:63770055 original size:18 final size:19
Alignment explanation
Indices: 63770032--63770070 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
63770022 TGCTTAATTA
* *
63770032 TGGTTTT-ATTTGAGATTT
1 TGGTTTTCAATTGAGAGTT
63770050 TGGTTTTCAATTGAGAGTT
1 TGGTTTTCAATTGAGAGTT
63770069 TG
1 TG
63770071 TATTTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.18, C:0.03, G:0.26, T:0.54
Consensus pattern (19 bp):
TGGTTTTCAATTGAGAGTT
Found at i:63773314 original size:31 final size:30
Alignment explanation
Indices: 63773277--63773376 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 30
63773267 AGAATTAGAA
63773277 CTAAATTGATAAATTTTGTAAATATTGAGGG
1 CTAAATTGATAAATTTTGTAAA-ATTGAGGG
* * * * *
63773308 CTAAATTTATTGAATTTTTTTAGAACTT-A-GA
1 CTAAATTGA-T-AAATTTTGTA-AAATTGAGGG
* *
63773339 CTAAAATGAAAAATTTTGTAAACATTGAGGG
1 CTAAATTGATAAATTTTGTAAA-ATTGAGGG
63773370 CTAAATT
1 CTAAATT
63773377 TGTTAATTTT
Statistics
Matches: 50, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
28 2 0.04
29 10 0.20
30 1 0.02
31 23 0.46
32 2 0.04
33 10 0.20
34 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (30 bp):
CTAAATTGATAAATTTTGTAAAATTGAGGG
Found at i:63773321 original size:61 final size:62
Alignment explanation
Indices: 63773263--63773439 Score: 218
Period size: 62 Copynumber: 2.9 Consensus size: 62
63773253 CTTTTGAAAA
63773263 TTTTAGAATTAGAACTAAATTGATAAATTTTGTAAATATTGAGGGCTAAATTTATTGAATTT
1 TTTTAGAATTAGAACTAAATTGATAAATTTTGTAAATATTGAGGGCTAAATTTATTGAATTT
* * * *
63773325 TTTTAGAACTTAG-ACTAAAATGAAAAATTTTGTAAACATTGAGGGCTAAATTTGTT-AATTT
1 TTTTAGAA-TTAGAACTAAATTGATAAATTTTGTAAATATTGAGGGCTAAATTTATTGAATTT
* * **
63773386 TTTTAGATTTAGAA-TCAAATTGATAGAA-TGTGTAAATATTAGATAGCTAAATTT
1 TTTTAGAATTAGAACT-AAATTGATA-AATTTTGTAAATATT-GAGGGCTAAATTT
63773440 GTTATTAGAC
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
60 5 0.05
61 30 0.30
62 60 0.61
63 4 0.04
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.41
Consensus pattern (62 bp):
TTTTAGAATTAGAACTAAATTGATAAATTTTGTAAATATTGAGGGCTAAATTTATTGAATTT
Found at i:63777828 original size:52 final size:52
Alignment explanation
Indices: 63777750--63777856 Score: 187
Period size: 52 Copynumber: 2.1 Consensus size: 52
63777740 ACAATGCCAA
*
63777750 CATGGTAGCAAACAAATAGGCACACATTTAACATATAAAAATACATTTAATC
1 CATGGTAACAAACAAATAGGCACACATTTAACATATAAAAATACATTTAATC
* *
63777802 CATGGTAACAAACCAATAGGCACACATTTAACATATAAAAATACTTTTAATC
1 CATGGTAACAAACAAATAGGCACACATTTAACATATAAAAATACATTTAATC
63777854 CAT
1 CAT
63777857 ACAAGAACTT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.47, C:0.19, G:0.08, T:0.26
Consensus pattern (52 bp):
CATGGTAACAAACAAATAGGCACACATTTAACATATAAAAATACATTTAATC
Found at i:63779752 original size:18 final size:18
Alignment explanation
Indices: 63779729--63779764 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
63779719 CCTTAGGTGG
63779729 ATTACTCTCAATTTTGTT
1 ATTACTCTCAATTTTGTT
63779747 ATTACTCTCAATTTTGTT
1 ATTACTCTCAATTTTGTT
63779765 TTAATCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.06, T:0.56
Consensus pattern (18 bp):
ATTACTCTCAATTTTGTT
Found at i:63782635 original size:42 final size:42
Alignment explanation
Indices: 63782514--63782647 Score: 132
Period size: 42 Copynumber: 3.1 Consensus size: 42
63782504 TTCCAATATG
*
63782514 TGATTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-ATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGTATT
* * * *
63782555 TGAGATTTATGTGTAAGACCATGTTTGGAACA-TCGGCATCGTATT
1 T--GATTT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCGTATT
63782600 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-TATT
63782643 TGATT
1 TGATT
63782648 ACAAGTAAGA
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
41 1 0.01
42 26 0.35
43 21 0.28
44 23 0.31
45 4 0.05
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGTATT
Found at i:63782657 original size:43 final size:42
Alignment explanation
Indices: 63782567--63782660 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
63782557 AGATTTATGT
* * **
63782567 GTAAGACCATGTTTGGAACATCGGCATCGTATTTGATTTCGT
1 GTAAGACCATGTCTGGAACATCGGCATCGTATTTGATTACAA
* *
63782609 GTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATTACAA
1 GTAAGACCATGTCTGGAACA-TCGGCATCG-TATTTGATTACAA
63782652 GTAAGACCA
1 GTAAGACCA
63782661 CATCTGGGAC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.56
43 19 0.44
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (42 bp):
GTAAGACCATGTCTGGAACATCGGCATCGTATTTGATTACAA
Found at i:63782667 original size:43 final size:42
Alignment explanation
Indices: 63782589--63782670 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
63782579 TTGGAACATC
* ** *
63782589 GGCATCGTATTTGATTTCGTGTAAGACCCTGTCTGGGACAGT
1 GGCATCGTATTTGATTACAAGTAAGACCCTATCTGGGACAGT
63782631 GGCATCGATATTTGATTACAAGTAAGACCAC-ATCTGGGAC
1 GGCATCG-TATTTGATTACAAGTAAGACC-CTATCTGGGAC
63782671 GATGAAATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 7 0.21
43 26 0.76
44 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (42 bp):
GGCATCGTATTTGATTACAAGTAAGACCCTATCTGGGACAGT
Found at i:63786627 original size:28 final size:24
Alignment explanation
Indices: 63786573--63786623 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
63786563 AAACAACTCC
*
63786573 TAAAAAAAACTCAAGAGCAATTCT
1 TAAAAAAAACTCAAGAGCAATTAT
63786597 TAAAGAAAAACTCAAAGAGC-ATTAT
1 TAAA-AAAAACTC-AAGAGCAATTAT
63786622 TA
1 TA
63786624 TTAACTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 4 0.17
25 14 0.58
26 6 0.25
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.22
Consensus pattern (24 bp):
TAAAAAAAACTCAAGAGCAATTAT
Found at i:63791506 original size:26 final size:26
Alignment explanation
Indices: 63791460--63791534 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
63791450 TCTCATCCCT
* * *
63791460 ATTTTACCC-CAACAAAATTTTGGCA
1 ATTTTACCCTTAATAAAATTTTGACA
* * *
63791485 ATTTTACCTTTGATAAAATTTTGACG
1 ATTTTACCCTTAATAAAATTTTGACA
*
63791511 ATTTTTCCCTTAATAAAATTTTGA
1 ATTTTACCCTTAATAAAATTTTGA
63791535 TGACTTTGCC
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 8 0.20
26 32 0.80
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43
Consensus pattern (26 bp):
ATTTTACCCTTAATAAAATTTTGACA
Found at i:63791720 original size:6 final size:6
Alignment explanation
Indices: 63791705--63791745 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
63791695 GCAAACGGAT
* *
63791705 CATTTC CATTTT CATTTC CATTTC CATTTT CATTTC CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
63791746 TCTGGAAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.56
Consensus pattern (6 bp):
CATTTC
Found at i:63791728 original size:18 final size:18
Alignment explanation
Indices: 63791705--63791745 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
63791695 GCAAACGGAT
63791705 CATTTCCATTTTCATTTC
1 CATTTCCATTTTCATTTC
63791723 CATTTCCATTTTCATTTC
1 CATTTCCATTTTCATTTC
63791741 CATTT
1 CATTT
63791746 TCTGGAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.56
Consensus pattern (18 bp):
CATTTCCATTTTCATTTC
Found at i:63793821 original size:23 final size:26
Alignment explanation
Indices: 63793795--63793846 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
63793785 GGGATAATAA
*
63793795 TTTTT-AA-TTAATATTCAACTGATT
1 TTTTTGAAGTTAATATTCAACTAATT
63793819 TTTTTGAAGTTAATATTCAACTAATT
1 TTTTTGAAGTTAATATTCAACTAATT
63793845 TT
1 TT
63793847 GAAAACAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 5 0.20
25 2 0.08
26 18 0.72
ACGTcount: A:0.33, C:0.08, G:0.06, T:0.54
Consensus pattern (26 bp):
TTTTTGAAGTTAATATTCAACTAATT
Found at i:63796780 original size:44 final size:43
Alignment explanation
Indices: 63796701--63796801 Score: 116
Period size: 44 Copynumber: 2.3 Consensus size: 43
63796691 CTGATATGTG
* * * *
63796701 TTATCGTGTAAGACCACTTCTGGGACGTTGGCATCG-ACTTATGAT
1 TTAT-GTGTAAGACCACATCTAGGACATTGACATCGTA-TT-TGAT
63796746 TTATGTGTAAGACCACATCTAGGACATTGACATCGTATTTGAT
1 TTATGTGTAAGACCACATCTAGGACATTGACATCGTATTTGAT
*
63796789 TT-CGTGTAAGACC
1 TTATGTGTAAGACC
63796802 CTGTCTGGGA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
42 10 0.20
43 6 0.12
44 29 0.58
45 5 0.10
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (43 bp):
TTATGTGTAAGACCACATCTAGGACATTGACATCGTATTTGAT
Found at i:63796863 original size:42 final size:43
Alignment explanation
Indices: 63796705--63796862 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 43
63796695 TATGTGTTAT
* *
63796705 CGTGTAAGACCACTTCTGGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * * * * *
63796749 TGTGTAAGACCACATCTAGGACATTGACATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* *
63796791 CGTGTAAGACC-CTGTCTGGGAAAG-TGGCATTGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGG-ACGTTGGCATCGATATTTGATTA
*
63796834 CATGTAAGACC-CGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
63796863 TATACGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 3 0.03
42 37 0.40
43 25 0.27
44 27 0.29
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:63798143 original size:34 final size:34
Alignment explanation
Indices: 63798096--63798183 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
63798086 GTGGGGCCTA
* * *
63798096 AACCCATATCAGTAACAGTGGCAATCTGGGCATT
1 AACCCATTTCAGTAAAAGTAGCAATCTGGGCATT
* * * **
63798130 AGCCTATTTCAGTAAAAGTAGCAGTCTGGGTTTT
1 AACCCATTTCAGTAAAAGTAGCAATCTGGGCATT
*
63798164 AACCCATTTCAGTAATAGTA
1 AACCCATTTCAGTAAAAGTA
63798184 ATCAATCTAG
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (34 bp):
AACCCATTTCAGTAAAAGTAGCAATCTGGGCATT
Found at i:63798205 original size:35 final size:35
Alignment explanation
Indices: 63798135--63798222 Score: 115
Period size: 35 Copynumber: 2.5 Consensus size: 35
63798125 GCATTAGCCT
* * * *
63798135 ATTTCAGTAAAAGT-AGCAGTCTGGGTTTTAACCC
1 ATTTCAGTAATAGTAATCAATCTAGGTTTTAACCC
**
63798169 ATTTCAGTAATAGTAATCAATCTAGGTTTTCGCCC
1 ATTTCAGTAATAGTAATCAATCTAGGTTTTAACCC
63798204 ATTTCAGTAATAGTAATCA
1 ATTTCAGTAATAGTAATCA
63798223 GTGCAGTAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 13 0.28
35 34 0.72
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (35 bp):
ATTTCAGTAATAGTAATCAATCTAGGTTTTAACCC
Found at i:63798231 original size:18 final size:18
Alignment explanation
Indices: 63798208--63798266 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
63798198 TCGCCCATTT
*
63798208 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* *
63798226 CAGTAACCA-TGATCAATG
1 CAGTAA-CAGTAATCAGTG
63798244 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
*
63798262 TAGTA
1 CAGTA
63798267 TGCAAACAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.25
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:63798582 original size:24 final size:21
Alignment explanation
Indices: 63798539--63798583 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 21
63798529 AACATAATAT
*
63798539 TATAAATGGATGCCACATACA
1 TATAAATGGATGCCAAATACA
63798560 TATAACATGGCATGCGCAAATACA
1 TATAA-ATGG-ATGC-CAAATACA
63798584 GTCACACACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 4 0.20
23 4 0.20
24 7 0.35
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (21 bp):
TATAAATGGATGCCAAATACA
Found at i:63798657 original size:27 final size:27
Alignment explanation
Indices: 63798610--63798671 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
63798600 AACAAATCTA
* *
63798610 TCATTTTACCTTACTGAGGTATTACAG
1 TCATTTTACCCTACAGAGGTATTACAG
* * *
63798637 TCATTTTACCCTACAGGGGTATTTCGG
1 TCATTTTACCCTACAGAGGTATTACAG
63798664 TCATTTTA
1 TCATTTTA
63798672 TCACATAAGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTACAGAGGTATTACAG
Found at i:63798693 original size:27 final size:27
Alignment explanation
Indices: 63798663--63798998 Score: 492
Period size: 27 Copynumber: 12.4 Consensus size: 27
63798653 GGGTATTTCG
*
63798663 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
63798690 GTCATTTTATCACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * * *
63798717 ATCATTTTACCACATAAGGGAAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
63798744 GTCATTTTATCACTTAAAGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
63798771 GTCATTTTATCACCTAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
63798798 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
63798825 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
63798852 GTCATTTTATCACTTAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
63798879 ATAATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
63798906 GTCATTTTATCACATAAAGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
63798933 GTCATTTTATCACATAAGGACAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
63798960 ATCATTTTATCACATAAAGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
63798987 GTCATTTTATCA
1 GTCATTTTATCA
63798999 AATGAGGGTT
Statistics
Matches: 276, Mismatches: 33, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 276 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:63801834 original size:37 final size:37
Alignment explanation
Indices: 63801783--63801945 Score: 254
Period size: 37 Copynumber: 4.4 Consensus size: 37
63801773 ACCTTTAGCT
* * *
63801783 CGGACATAATCTCCACACGAAGTTATCGGGACTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
63801820 CGGACAAAACCTCCACACGTAGTCATTGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
* *
63801857 CGGACAAAATCTCCACACGTAGTCATCGCGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
63801894 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
63801931 CGGACATAATCTCCA
1 CGGACATAATCTCCA
63801946 AGTTTCATGT
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 115 1.00
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:63802210 original size:94 final size:94
Alignment explanation
Indices: 63802097--63802329 Score: 394
Period size: 94 Copynumber: 2.5 Consensus size: 94
63802087 TTTCACACTA
* * * *
63802097 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
63802162 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
63802191 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
63802256 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
** * *
63802285 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACAT
63802330 AAATCCTAAA
Statistics
Matches: 131, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 131 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:63802319 original size:47 final size:47
Alignment explanation
Indices: 63802097--63802329 Score: 331
Period size: 47 Copynumber: 5.0 Consensus size: 47
63802087 TTTCACACTA
* * * * *
63802097 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
63802144 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
63802191 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
63802238 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
63802285 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
63802330 AAATCCTAAA
Statistics
Matches: 164, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 164 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:63805449 original size:123 final size:123
Alignment explanation
Indices: 63805230--63805568 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
63805220 GAATTATGTG
63805230 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
63805295 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
63805353 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
63805418 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
** * * * *
63805476 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
63805541 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
63805569 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:63805592 original size:40 final size:40
Alignment explanation
Indices: 63805537--63805780 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
63805527 TGAATGATAC
* * * * **
63805537 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
63805577 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
63805617 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
63805657 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
63805697 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
63805737 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
63805777 CCGG
1 CCGG
63805781 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:63812964 original size:21 final size:20
Alignment explanation
Indices: 63812930--63812968 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
63812920 GAGTATTTTG
*
63812930 ATGTTTAATTATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
63812951 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
63812969 ACAAGTTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:63815397 original size:43 final size:43
Alignment explanation
Indices: 63815228--63815398 Score: 129
Period size: 42 Copynumber: 4.0 Consensus size: 43
63815218 CATAGGATTT
* * * *
63815228 TCGATATGTGATTTCCTGTAAGACCACGTCTACGACGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * * * *
63815271 TC-A-ATTTGATTTATGTGTAAGACTATGTCTGGGACATTGGCA
1 TCGATATTTGA-TTACGTGTAAGACCACGTCTAGGACGTTGGCA
* ** *
63815313 TCG-TTTTTGATTTTGTGTAAGATCC-TGTCT-GCGACAG-TGGCA
1 TCGATATTTGATTACGTGTAAGA-CCACGTCTAG-GAC-GTTGGCA
* *
63815355 TCGATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
63815398 T
1 T
63815399 TGTATGAGCT
Statistics
Matches: 99, Mismatches: 19, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
41 6 0.06
42 57 0.58
43 35 0.35
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
Found at i:63826458 original size:25 final size:26
Alignment explanation
Indices: 63826420--63826486 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 26
63826410 TCCTGTACAT
*
63826420 GTATGCTCAT-ACGAGCTA-TGAATCG
1 GTATGCTC-TCACGAGCTAGTAAATCG
63826445 GTATGCTCTCACGAG-TAGTAAATCG
1 GTATGCTCTCACGAGCTAGTAAATCG
* *
63826470 GTAAGCTCTCACAAGCT
1 GTATGCTCTCACGAGCT
63826487 GAGAATTGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 3 0.08
25 32 0.89
26 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
GTATGCTCTCACGAGCTAGTAAATCG
Found at i:63831775 original size:48 final size:48
Alignment explanation
Indices: 63831704--63831925 Score: 216
Period size: 48 Copynumber: 4.6 Consensus size: 48
63831694 TATGTGTGCC
*
63831704 AGTGTAAGACCATGTCT-AGGACATGGCATTAGCCACATTATAAGAGCT
1 AGTGTAAGACCATGTCTGA-GACATGGCATCAGCCACATTATAAGAGCT
* * *
63831752 AGTGTAAGACCATGTCTGAGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCT
* * ***** ** *
63831800 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGCTATGTGTGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCT
* * * *
63831848 AGTGTAAGACCGTGTCTGGGACATGACATCAGCGACATTATAAGAGCCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAG-CT
* *
63831897 -GTGTAAGACCACGTAT-AGGACATGGCATC
1 AGTGTAAGACCATGTCTGA-GACATGGCATC
63831926 GGCCTCGACA
Statistics
Matches: 143, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
48 140 0.98
49 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCT
Found at i:63831948 original size:96 final size:96
Alignment explanation
Indices: 63831701--63831964 Score: 280
Period size: 96 Copynumber: 2.8 Consensus size: 96
63831691 TGATATGTGT
* * ** * ** *
63831701 GCCAGTGTAAGACCATGTCTAGGACATGGCATTAGCCACATTATA-AGAGCTAGTGTAAGACCAT
1 GCCAGTGTAAGACCACGTATAGGACATGGCATCGGCCTCGCTA-AGTGAGCTAGTGTAAGACCAT
* * * *
63831765 GTCTGAGACATGGCATCGGCCACATTATGAGA
65 GTCTGGGACATGACATCAGCCACATTATAAGA
* * * * * * * *
63831797 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGCTATGTGTGCTAGTGTAAGACCGTG
1 GCCAGTGTAAGACCACGTATAGGACATGGCATCGGCCTCGCTAAGTGAGCTAGTGTAAGACCATG
*
63831862 TCTGGGACATGACATCAGCGACATTATAAGA
66 TCTGGGACATGACATCAGCCACATTATAAGA
* *
63831893 GCCTGTGTAAGACCACGTATAGGACATGGCATCGGCCTCGAC-AAGTGAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACCACGTATAGGACATGGCATCGGCCTCG-CTAAGTGAGCTAGTGTAAGACCAT
*
63831957 ATCTGGGA
65 GTCTGGGA
63831965 TATGGCATTG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
96 137 0.99
97 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (96 bp):
GCCAGTGTAAGACCACGTATAGGACATGGCATCGGCCTCGCTAAGTGAGCTAGTGTAAGACCATG
TCTGGGACATGACATCAGCCACATTATAAGA
Found at i:63831954 original size:144 final size:144
Alignment explanation
Indices: 63831694--63831972 Score: 384
Period size: 144 Copynumber: 1.9 Consensus size: 144
63831684 AATTGGGTGA
* *
63831694 TATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTAGCCACATTATAAGAGCTAGTGTAA
1 TATGTGTGCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCACATTATAAGAGCTAGTGTAA
* * * * *
63831759 GACCATGTCTGAGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
66 GACCACGTATGAGACATGGCATCGGCCACATCAAGAGAGCCAGTGTAAGACCATATCTGGGACAT
63831824 GGCATCGGCGTTGC
131 GGCATCGGCGTTGC
* * * *
63831838 TATGTGTGCTAGTGTAAGACCGTGTCTGGGACATGACATCAGCGACATTATAAGAGCCT-GTGTA
1 TATGTGTGCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCACATTATAAGAG-CTAGTGTA
* *
63831902 AGACCACGTAT-AGGACATGGCATCGGCCTCGA-CAAGTGAGCCAGTGTAAGACCATATCTGGGA
65 AGACCACGTATGA-GACATGGCATCGGCCAC-ATCAAGAGAGCCAGTGTAAGACCATATCTGGGA
*
63831965 TATGGCAT
128 CATGGCAT
63831973 TGATAATTTA
Statistics
Matches: 118, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
143 1 0.01
144 114 0.97
145 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (144 bp):
TATGTGTGCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCACATTATAAGAGCTAGTGTAA
GACCACGTATGAGACATGGCATCGGCCACATCAAGAGAGCCAGTGTAAGACCATATCTGGGACAT
GGCATCGGCGTTGC
Found at i:63831970 original size:48 final size:48
Alignment explanation
Indices: 63831701--63831972 Score: 182
Period size: 48 Copynumber: 5.7 Consensus size: 48
63831691 TGATATGTGT
* ** * * *
63831701 GCCAGTGTAAGACCATGTCTAGGACATGGCATTAGCCAC-ATTATA-AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CA-AGTGA
* * * * * *
63831749 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCCAC-ATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CAAGTGA
* * * *
63831797 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTG-CTATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAC-AAGTGA
* * * *
63831845 GCTAGTGTAAGACCGTGTCTGGGACATGACATCAG---CGACATTA-TAAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACA--AGT--GA
* * * *
63831893 GCCTGTGTAAGACCACGTATAGGACATGGCATCGGCCTCGACAAGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACAAGTGA
* *
63831941 GCCAGTGTAAGACCATATCTGGGATATGGCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCAT
63831973 TGATAATTTA
Statistics
Matches: 177, Mismatches: 35, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
45 2 0.01
46 2 0.01
48 166 0.94
49 1 0.01
50 1 0.01
51 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACAAGTGA
Found at i:63840436 original size:17 final size:18
Alignment explanation
Indices: 63840407--63840441 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
63840397 TTCTCCTAAA
*
63840407 TTTCAATTTTATTTAATT
1 TTTCAATTTTATTGAATT
63840425 TTTCAA-TTTATTGAATT
1 TTTCAATTTTATTGAATT
63840442 GTTAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (18 bp):
TTTCAATTTTATTGAATT
Found at i:63842631 original size:5 final size:5
Alignment explanation
Indices: 63842617--63842654 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
63842607 AAATGCTCGT
*
63842617 AAAA- AAAAG AAAAG AAAAG AAAAG AAAAA AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
63842655 AAGAGAGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:63846253 original size:27 final size:27
Alignment explanation
Indices: 63846215--63846379 Score: 152
Period size: 27 Copynumber: 6.1 Consensus size: 27
63846205 GGTCGTTATC
*
63846215 TGACCGTAACACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
63846242 TGACCGTAACACCCCTGTTGGCTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* **
63846269 TGATCGTAATACCTTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
63846296 TGATCGTAATACCCTTATAGGGT-AAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * * * *
63846322 TCATCATAATGCCCCGGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * * *
63846349 TGACTGTAATACTCCTGTATGGTAACA
1 TGACCGTAATACCCCTGTAGGGTAAAA
63846376 TGAC
1 TGAC
63846380 GATTATGCCT
Statistics
Matches: 112, Mismatches: 25, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
26 20 0.18
27 92 0.82
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:63846373 original size:53 final size:52
Alignment explanation
Indices: 63846225--63846373 Score: 142
Period size: 53 Copynumber: 2.8 Consensus size: 52
63846215 TGACCGTAAC
* * * *
63846225 ACCCCTGTAGGGTAAAATGACCGTAACACCCCTGT-TGGCTAAAATGATCGTAAT
1 ACCCCTGTAGGGTAAAATGACTGTAATA-CCCTGTATGG-T-AAATCATCATAAT
**
63846279 ACCTTTGTAGGGTAAAATGA-TCGTAATACCCT-TATAGGGTAAATCATCATAAT
1 ACCCCTGTAGGGTAAAATGACT-GTAATACCCTGTAT--GGTAAATCATCATAAT
* *
63846332 GCCCCGGTAGGGTAAAATGACTGTAATACTCCTGTATGGTAA
1 ACCCCTGTAGGGTAAAATGACTGTAATAC-CCTGTATGGTAA
63846374 CATGACGATT
Statistics
Matches: 78, Mismatches: 10, Indels: 15
0.76 0.10 0.15
Matches are distributed among these distances:
52 1 0.01
53 44 0.56
54 28 0.36
55 5 0.06
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (52 bp):
ACCCCTGTAGGGTAAAATGACTGTAATACCCTGTATGGTAAATCATCATAAT
Found at i:63846564 original size:27 final size:26
Alignment explanation
Indices: 63846514--63846593 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
63846504 ATGGAGGAAG
**
63846514 TACT-GTACTGGTGGCTATATCACAT
1 TACTAGTACTGGTGGCTATGCCACAT
*
63846539 TCACTATTACTGGTGGCTATGCCACAAT
1 T-ACTAGTACTGGTGGCTATGCCAC-AT
*
63846567 TACTGGTACTGGTGGC-ATTGCCACAT
1 TACTAGTACTGGTGGCTA-TGCCACAT
63846593 T
1 T
63846594 TATTGTTCTG
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.02
26 7 0.15
27 35 0.76
28 3 0.07
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (26 bp):
TACTAGTACTGGTGGCTATGCCACAT
Found at i:63847858 original size:20 final size:18
Alignment explanation
Indices: 63847820--63847859 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
63847810 ACATGTTATG
*
63847820 TTAATATGTTTAATTTAA
1 TTAATATGCTTAATTTAA
63847838 TTAATATGGCTTAAGTTTAA
1 TTAATAT-GCTTAA-TTTAA
63847858 TT
1 TT
63847860 TGTGTTAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 5 0.26
20 7 0.37
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.53
Consensus pattern (18 bp):
TTAATATGCTTAATTTAA
Found at i:63856012 original size:44 final size:44
Alignment explanation
Indices: 63855964--63856105 Score: 133
Period size: 44 Copynumber: 3.2 Consensus size: 44
63855954 CAGACATGTC
* *
63855964 TTACACTGGCACAACTCTTAGCCGATGTGTGTGCTAGACACATA
1 TTACACTGGCACAACTCTTAGCCGATGCGTGTCCTAGACACATA
* ** * * * **
63856008 TTACACTGGCTATCATCATCGAAGCTGATGCATGTCCCAGACATGTCA
1 TTACACTGGC-A-CAAC-TCTTAGCCGATGCGTGTCCTAGACACAT-A
* *
63856056 -TACACTGGCACAACTCTTAGCCGATGCGTATCCTAGACACATC
1 TTACACTGGCACAACTCTTAGCCGATGCGTGTCCTAGACACATA
63856099 TTACACT
1 TTACACT
63856106 AGCTATCATC
Statistics
Matches: 73, Mismatches: 20, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
44 36 0.49
45 4 0.05
46 4 0.05
47 28 0.38
48 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (44 bp):
TTACACTGGCACAACTCTTAGCCGATGCGTGTCCTAGACACATA
Found at i:63856060 original size:47 final size:45
Alignment explanation
Indices: 63855943--63856243 Score: 230
Period size: 47 Copynumber: 6.6 Consensus size: 45
63855933 TATACGTGCT
* *
63855943 GATGCATGTCCCAGACATGTCTTACACTGGCA-CAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTAAGCC
** * * ** * * *
63855987 GATGTGTGTGCTAGACACATATTACACTGGCTATCATCATCGAAGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCATC-TCTAAGCC
* * *
63856034 GATGCATGTCCCAGACATGTCATACACTGGCA-CAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTAAGCC
* * * ** * * * *
63856078 GATGCGTATCCTAGACACATCTTACACTAGCTATCATCATCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCATC-TCTAAGCC
*
63856125 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTAAGCC
* * * * * *
63856171 GATGCCATGTCCCAGACATGGTCTTATACAGTCACTCATAATGT-GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCA-TCAT-CTCTAAGCC
63856219 GATGCATGTCCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
63856244 TCTAGCACAC
Statistics
Matches: 196, Mismatches: 51, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
44 53 0.27
45 5 0.03
46 23 0.12
47 90 0.46
48 23 0.12
49 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTAAGCC
Found at i:63856095 original size:91 final size:91
Alignment explanation
Indices: 63855940--63856157 Score: 373
Period size: 91 Copynumber: 2.4 Consensus size: 91
63855930 ATATATACGT
* * *
63855940 GCTGATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTTAGCCGATGTGTGTGCTAGACAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTTAGCCGATGCGTATCCTAGACAC
*
63856005 ATATTACACTGGCTATCATCATCGAA
66 ATATTACACTAGCTATCATCATCGAA
*
63856031 GCTGATGCATGTCCCAGACATGTCATACACTGGCACAACTCTTAGCCGATGCGTATCCTAGACAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTTAGCCGATGCGTATCCTAGACAC
* *
63856096 ATCTTACACTAGCTATCATCATCGAG
66 ATATTACACTAGCTATCATCATCGAA
63856122 GCTGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCAC
63856158 TCATCTCTAC
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 119 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (91 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTTAGCCGATGCGTATCCTAGACAC
ATATTACACTAGCTATCATCATCGAA
Found at i:63856220 original size:48 final size:46
Alignment explanation
Indices: 63855898--63856243 Score: 169
Period size: 47 Copynumber: 7.5 Consensus size: 46
63855888 ACGCGTTCAC
* * * *
63855898 CATGTCCCAGACATGGTCTTATACTA-GCTCTCATATATACGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACAC-AGGCACTCATATCTAC--GCCGATG
*
63855947 CATGTCCCAGACATGTCTTACACTGGCA--CA-ACTCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACAGGCACTCATA-TC-TACGCCGATG
** * * ** * * * * *
63855991 TGTGTGCTAGACACATATTACACTGGCTA-TCATCATCGAAGCTGATG
1 CATGTCCCAGACATGTCTTACACAGGC-ACTCAT-ATCTACGCCGATG
* *
63856038 CATGTCCCAGACATGTCATACACTGGCA--CA-ACTCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACAGGCACTCATA-TC-TACGCCGATG
* * * ** * * *
63856082 CGTATCCTAGACACATCTTACACTA-GCTA-TCATCATCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACAC-AGGC-ACTCAT-ATCTACGCCGATG
* *
63856129 CATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACGCCGATG
1 CATGTCCCAGACATGTCTTACACAGGCACTCATATCTACGCCGATG
* * * *
63856175 CCATGTCCCAGACATGGTCTTATACAGTCACTCATAATGT-GGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACAGGCACTCAT-ATCTACGCCGATG
63856223 CATGTCCCAGACATGTCTTAC
1 CATGTCCCAGACATGTCTTAC
63856244 TCTAGCACAC
Statistics
Matches: 226, Mismatches: 50, Indels: 45
0.70 0.16 0.14
Matches are distributed among these distances:
43 1 0.00
44 53 0.23
45 6 0.03
46 26 0.12
47 89 0.39
48 35 0.15
49 16 0.07
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACAGGCACTCATATCTACGCCGATG
Found at i:63862530 original size:49 final size:49
Alignment explanation
Indices: 63862470--63862778 Score: 509
Period size: 49 Copynumber: 6.4 Consensus size: 49
63862460 TACATATATG
* * * *
63862470 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
63862519 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
63862568 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TG-ATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
63862615 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
63862664 --TGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
63862711 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
63862760 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
63862779 TAATGTAAAA
Statistics
Matches: 244, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 89 0.36
48 4 0.02
49 151 0.62
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Done.