Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 226 of 345
Found at i:65695425 original size:18 final size:19
Alignment explanation
Indices: 65695387--65695427 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
65695377 TGGTTCATGT
65695387 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
65695406 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
65695424 TTTC
1 TTTC
65695428 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:65695617 original size:39 final size:38
Alignment explanation
Indices: 65695550--65695684 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
65695540 ACCAATATGG
* * *
65695550 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
65695589 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
65695627 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
65695668 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
65695685 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:65695949 original size:18 final size:19
Alignment explanation
Indices: 65695923--65695961 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
65695913 TTTCAATTCA
65695923 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
65695942 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
65695960 AT
1 AT
65695962 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:65697285 original size:5 final size:5
Alignment explanation
Indices: 65697275--65697327 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
65697265 TTACTTATTT
* *
65697275 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
65697323 ATATA
1 ATATA
65697328 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:65697291 original size:12 final size:12
Alignment explanation
Indices: 65697274--65697329 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
65697264 TTTACTTATT
65697274 TATATAATATAA
1 TATATAATATAA
65697286 TATATAATATAATA
1 TATATAATAT-A-A
65697300 TACTATAATATAA
1 TA-TATAATATAA
*
65697313 TA-ATAATTTAA
1 TATATAATATAA
65697324 TATATA
1 TATATA
65697330 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:65698592 original size:64 final size:64
Alignment explanation
Indices: 65698514--65698707 Score: 388
Period size: 64 Copynumber: 3.0 Consensus size: 64
65698504 CAAAATAAAC
65698514 ATTTCAATACACATTATATGCCAATTCAACTTGTTATTCAATTACCTATTTAATACCATGCACT
1 ATTTCAATACACATTATATGCCAATTCAACTTGTTATTCAATTACCTATTTAATACCATGCACT
65698578 ATTTCAATACACATTATATGCCAATTCAACTTGTTATTCAATTACCTATTTAATACCATGCACT
1 ATTTCAATACACATTATATGCCAATTCAACTTGTTATTCAATTACCTATTTAATACCATGCACT
65698642 ATTTCAATACACATTATATGCCAATTCAACTTGTTATTCAATTACCTATTTAATACCATGCACT
1 ATTTCAATACACATTATATGCCAATTCAACTTGTTATTCAATTACCTATTTAATACCATGCACT
65698706 AT
1 AT
65698708 CCATTCATCA
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 130 1.00
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.39
Consensus pattern (64 bp):
ATTTCAATACACATTATATGCCAATTCAACTTGTTATTCAATTACCTATTTAATACCATGCACT
Found at i:65703190 original size:23 final size:23
Alignment explanation
Indices: 65703150--65703203 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
65703140 AAGCTCTGTT
65703150 GAGCT-AAATAGTAAGCT-CATAC
1 GAGCTGAAATAGTAAGCTCCA-AC
* * *
65703172 GAGCTGAAATGGTACGCTCCAAT
1 GAGCTGAAATAGTAAGCTCCAAC
65703195 GAGCTGAAA
1 GAGCTGAAA
65703204 ACAGTATGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.19
23 20 0.74
24 2 0.07
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (23 bp):
GAGCTGAAATAGTAAGCTCCAAC
Found at i:65707323 original size:56 final size:56
Alignment explanation
Indices: 65707199--65707356 Score: 199
Period size: 56 Copynumber: 2.8 Consensus size: 56
65707189 GAGGGGGTGT
* ** *
65707199 TAGGATATTATTATGGGATATTATCTTTTTAGCAATTTAATTCCTAATGGGATGTTA
1 TAGGATATTATTATGGGATATTATC-TTTTAGCAATTTGATTCCTAATGAAATATTA
* * * * *
65707256 TAGGATGTTATTACGAGATATTATCTCTTAGTAATTTGATTCCTAATGAAATATTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGAAATATTA
* * *
65707312 TATGATATTATTATGGGGTATTATTTTTTAGCAATTTGATTCCTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTA
65707357 CGTAACTACT
Statistics
Matches: 84, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
56 62 0.74
57 22 0.26
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (56 bp):
TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGAAATATTA
Found at i:65713519 original size:17 final size:15
Alignment explanation
Indices: 65713483--65713521 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 15
65713473 CAGCTACACG
65713483 TTTATATTTTTATTAA
1 TTTA-ATTTTTATTAA
65713499 TTTAATTTTTAATTCAA
1 TTTAATTTTT-ATT-AA
65713516 TTTAAT
1 TTTAAT
65713522 CATTAAGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.29
16 7 0.33
17 8 0.38
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTAATTTTTATTAA
Found at i:65713690 original size:18 final size:19
Alignment explanation
Indices: 65713647--65713691 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
65713637 ATATGTCAGC
*
65713647 TTAATAAATATTTTAAAAAT
1 TTAA-AAATATTTCAAAAAT
65713667 TATAAAAATA-TTCAAAAAT
1 T-TAAAAATATTTCAAAAAT
65713686 TTAAAA
1 TTAAAA
65713692 TTAAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 9 0.39
20 6 0.26
21 3 0.13
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
TTAAAAATATTTCAAAAAT
Found at i:65713708 original size:25 final size:26
Alignment explanation
Indices: 65713662--65713711 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
65713652 AAATATTTTA
65713662 AAAATTATAAAAATATTCAAAAATTT
1 AAAATTATAAAAATATTCAAAAATTT
65713688 AAAATTA-AAAAATATAT-AAAAATT
1 AAAATTATAAAAATAT-TCAAAAATT
65713712 CATAAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (26 bp):
AAAATTATAAAAATATTCAAAAATTT
Found at i:65713708 original size:35 final size:33
Alignment explanation
Indices: 65713661--65713726 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 33
65713651 TAAATATTTT
65713661 AAAAATTATAAAAATATTC-AAAAATTTAAAATTA
1 AAAAATTAT-AAAA-ATTCAAAAAATTTAAAATTA
65713695 AAAAATATATAAAAATTCATAAAAATTTAAAA
1 AAAAAT-TATAAAAATTCA-AAAAATTTAAAA
65713727 AGAAAGTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
33 4 0.14
34 10 0.34
35 15 0.52
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (33 bp):
AAAAATTATAAAAATTCAAAAAATTTAAAATTA
Found at i:65713710 original size:10 final size:9
Alignment explanation
Indices: 65713650--65713727 Score: 67
Period size: 10 Copynumber: 8.8 Consensus size: 9
65713640 TGTCAGCTTA
*
65713650 ATAAATATT
1 ATAAAAATT
*
65713659 TTAAAAATT
1 ATAAAAATT
65713668 ATAAAAA-T
1 ATAAAAATT
65713676 ATTCAAAAATT
1 A-T-AAAAATT
65713687 -T-AAAATT
1 ATAAAAATT
65713694 A-AAAAATAT
1 ATAAAAAT-T
65713703 ATAAAAATT
1 ATAAAAATT
65713712 CATAAAAATT
1 -ATAAAAATT
65713722 -TAAAAA
1 ATAAAAA
65713728 GAAAGTATGA
Statistics
Matches: 58, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
7 6 0.10
8 13 0.22
9 18 0.31
10 20 0.34
11 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:65718974 original size:19 final size:18
Alignment explanation
Indices: 65718952--65719000 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
65718942 TAAAACCATT
*
65718952 AAAAATTTTAAATAATTTA
1 AAAAATTTTAAA-AATATA
*
65718971 AAAAATTAT-AAAATATA
1 AAAAATTTTAAAAATATA
*
65718988 AAAAATATTAAAA
1 AAAAATTTTAAAA
65719001 TTTATATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 12 0.48
18 5 0.20
19 8 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAATTTTAAAAATATA
Found at i:65726304 original size:53 final size:54
Alignment explanation
Indices: 65726173--65726291 Score: 195
Period size: 56 Copynumber: 2.2 Consensus size: 54
65726163 TCCCAGACAG
*
65726173 GGTCTTAGTCACACACATATATCAGAGTCACATATCAATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCAGAGTCACATATCAAT--CAACGTATTAAACGT
*
65726229 GGTCTTACTCACACACATATATCAGAGTCACATATCGAT-AACGTATTAAACGT
1 GGTCTTACTCACACACATATATCAGAGTCACATATCAATCAACGTATTAAACGT
65726282 GGTCTTACTC
1 GGTCTTACTC
65726292 GTACATATAT
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
53 24 0.39
56 37 0.61
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.29
Consensus pattern (54 bp):
GGTCTTACTCACACACATATATCAGAGTCACATATCAATCAACGTATTAAACGT
Found at i:65726656 original size:15 final size:15
Alignment explanation
Indices: 65726636--65726665 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65726626 GGTTCTTGAT
65726636 TTAAACATATTCAAA
1 TTAAACATATTCAAA
*
65726651 TTAAACTTATTCAAA
1 TTAAACATATTCAAA
65726666 CATATTTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAACATATTCAAA
Found at i:65728314 original size:33 final size:33
Alignment explanation
Indices: 65728219--65728315 Score: 106
Period size: 34 Copynumber: 2.9 Consensus size: 33
65728209 GTGTTTGCAT
* *
65728219 ACTG-TACTGGAATAGGCTAAGGCCCAGACTGCC
1 ACTGATACTGTAATAGGC-AAGGCCCAGACTACC
* *
65728252 ACTGATACTGTAATGGGGTAAGGCCCAGACTACC
1 ACTGATACTGTAAT-AGGCAAGGCCCAGACTACC
* * *
65728286 ATTGATATTGTAATAGGCCAGGCCCAGACT
1 ACTGATACTGTAATAGGCAAGGCCCAGACT
65728316 GTTACTGCTA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
33 17 0.32
34 34 0.64
35 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (33 bp):
ACTGATACTGTAATAGGCAAGGCCCAGACTACC
Found at i:65734624 original size:48 final size:48
Alignment explanation
Indices: 65734567--65734793 Score: 212
Period size: 48 Copynumber: 4.8 Consensus size: 48
65734557 TGGTAGGATA
* ** * *
65734567 CCAATGCCATATCCTGGATATGGTCTTACATGGGATCACATATCAATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
* * ** *
65734615 CCAATGCCATGTCCCAAACATGGTCTTACAGGGGATCGTAGATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
* *
65734663 CTAATGTCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
* * ** ** ** *
65734711 CCGAT---A-G-CCTAGTTATGGTCTTACCCGAAATTACATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
* *
65734754 CCAAAGCCATGTCCCAGACATGGTCTTACATTGGATCACA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
65734794 CATAACCTTA
Statistics
Matches: 136, Mismatches: 38, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
43 31 0.23
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 101 0.74
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
Found at i:65740711 original size:2 final size:2
Alignment explanation
Indices: 65740704--65740730 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65740694 GGGCTGTTAC
65740704 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
65740731 AGCCACACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65743669 original size:39 final size:39
Alignment explanation
Indices: 65743515--65743677 Score: 238
Period size: 39 Copynumber: 4.2 Consensus size: 39
65743505 TATGGTAACC
** * *
65743515 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
65743555 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACA-ATT
65743595 -GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
65743633 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
65743672 CACACA
1 CGCACA
65743678 TTCATTCACA
Statistics
Matches: 112, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.02
39 93 0.83
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:65746663 original size:71 final size:71
Alignment explanation
Indices: 65746579--65746742 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65746569 CGATTTGTCT
65746579 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65746644 CTTTCA
66 CTTTCA
65746650 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65746715 CTTTCA
66 CTTTCA
65746721 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
65746743 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:65746780 original size:71 final size:70
Alignment explanation
Indices: 65746579--65746776 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
65746569 CGATTTGTCT
* * * *
65746579 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
65746644 CTTTCA
65 CTTTCA
* * * *
65746650 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
65746715 CTTTCA
65 CTTTCA
* *
65746721 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
65746777 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:65754240 original size:71 final size:71
Alignment explanation
Indices: 65754154--65754317 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65754144 CGATTTGTCT
65754154 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65754219 CTTTCA
66 CTTTCA
65754225 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65754290 CTTTCA
66 CTTTCA
65754296 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
65754318 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:65754355 original size:71 final size:70
Alignment explanation
Indices: 65754154--65754351 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
65754144 CGATTTGTCT
* * * *
65754154 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
65754219 CTTTCA
65 CTTTCA
* * * *
65754225 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
65754290 CTTTCA
65 CTTTCA
* *
65754296 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
65754352 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:65757291 original size:56 final size:56
Alignment explanation
Indices: 65757204--65757337 Score: 178
Period size: 56 Copynumber: 2.4 Consensus size: 56
65757194 ATGGCATCGA
* * * **
65757204 TATATGTTGTGCGAGTAAGACCATGTTTAATACATTGTCATTGATATGTGATTCTGT
1 TATATG-TGTGCGAGTAAGACCACGTTTAATACATTGGCATTGATATGTGACTCCAT
* *
65757261 TATATGTGTACGAGTAAGACCACGTTTAATACATTGGCGTTGATATGTGACTCCAT
1 TATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATTGATATGTGACTCCAT
* *
65757317 TATATGTCTGTGAGTAAGACC
1 TATATGTGTGCGAGTAAGACC
65757338 CTGTCTGGGA
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
56 61 0.91
57 6 0.09
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATTGATATGTGACTCCAT
Found at i:65760877 original size:48 final size:48
Alignment explanation
Indices: 65760806--65760900 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
65760796 ACTGTGATTA
* * *
65760806 ATGATATTTGTGCCTATGTAAGACAATGTCTTGGACATGGCATCGGCG
1 ATGATATGTGTGCCTATATAAGACAATGTCTGGGACATGGCATCGGCG
*
65760854 ATGATATGTGTG-CTAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 ATGATATGTGTGCCTA-TATAAGACAATGTCTGGGACATGGCATCGGC
65760901 ACTGACATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 3 0.07
48 39 0.93
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
ATGATATGTGTGCCTATATAAGACAATGTCTGGGACATGGCATCGGCG
Found at i:65760921 original size:48 final size:48
Alignment explanation
Indices: 65760824--65760943 Score: 127
Period size: 48 Copynumber: 2.5 Consensus size: 48
65760814 TGTGCCTATG
* * * **
65760824 TAAGACAATGTCTTGGACATGGCATCGGCGATGATATGTGTGCTAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCGATGACATGTGACCTAGTA
*
65760872 TAAGACCATGTCTGGGACATGGCATCGGC-ACTGACAT-TAGACCTTGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCGA-TGACATGT-GACCTAGTA
* * *
65760920 TAAGACCATATCCGGGATATGGCA
1 TAAGACCATGTCTGGGACATGGCA
65760944 ATGATATGTG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
47 2 0.03
48 59 0.97
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCGATGACATGTGACCTAGTA
Found at i:65767204 original size:451 final size:450
Alignment explanation
Indices: 65766340--65767242 Score: 1533
Period size: 451 Copynumber: 2.0 Consensus size: 450
65766330 TGGCTGAAAC
*
65766340 TTGCATGGCGAAACCATGTCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGTAAGTCCGTTCTAGC
1 TTGCATGGCGAAACCATGTCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGCAAGTCCGTTCTAGC
* *
65766405 CCCGTTTTTAATGATTTTTATGTTTTTACAATCCCCGTAACAAGATCTATTTATTTCTTCCATTA
66 CCCGTTTTTAATGATTTTTATGTTTTTACAATCCCCGTAACAAGATCTATCTATTTCTACCATTA
* * *
65766470 ATTTGAGCTAGGGTTCATGTTTAAAAATTGATCCATGTGTGAGATGCATGCATTTTGATGTCTAA
131 ATTTGAGCTAGGGTTCATGTTTAAAAATTGACCCATGTATGAGATGCATGCATTTTGAAGTCTAA
* * * *
65766535 TGGTAGAGAATAAGTGTTGGGTGTTAAATAAATGACTTTTACTAATCAATTTTCGATGAGAACGT
196 TGGTAGAAAATAAGTGTTAGGTGTTAAATAAACGACTTTTACTAAGCAATTTTCGATGAGAACGT
65766600 CTGAAAGAACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATTAGA
261 CTGAAAGAACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATTAGA
** *
65766665 GGCTGCTATAGCTATGAAAATGATTCAACTAGGCTTAAAATGTACGAAAATTGAATAAAAATCAT
326 GAATGCTATAGCTATGAAAATAATTCAACTAGGCTTAAAATGTACGAAAATTGAATAAAAATCAT
* *
65766730 TTTACGAGCCTAGGGGAAAAAGTGTAAATATGACAAAGTTTAAGGGCAGAAATGTAAGTT
391 TTTACGAGCCCAGGGGAAAAAGTGTAAATATGACAAAGTTTAAGGGCAAAAATGTAAGTT
*
65766790 TTGCATGGCGAAACCATGTCTAGGGTTTTTCAAGCTTCCAAGGTCGATTGCAAGTCTC-TTCTAG
1 TTGCATGGCGAAACCATGTCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGCAAGTC-CGTTCTAG
* *
65766854 CCCTGTTTTTAATGATTTTTTATGTTTTTGCAATCCCCGTAACAAGATCTATCTATTTCTACCAT
65 CCCCGTTTTTAATGA-TTTTTATGTTTTTACAATCCCCGTAACAAGATCTATCTATTTCTACCAT
65766919 TAATTTGAGCTAGGGTTCATGTTTAAAAATTGACCCATGTATGAGATGCATGCATTTTGAAGTCT
129 TAATTTGAGCTAGGGTTCATGTTTAAAAATTGACCCATGTATGAGATGCATGCATTTTGAAGTCT
*
65766984 AATGGTAGAAAATGAA-TGTTAGGTGTTAAATAAACGACTTTTACTAAGCGATTTTCGATGAGAA
194 AATGGTAGAAAAT-AAGTGTTAGGTGTTAAATAAACGACTTTTACTAAGCAATTTTCGATGAGAA
* * *
65767048 TGTCTGAAAGGACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAATGATAATTTAGTGGAAATT
258 CGTCTGAAAGAACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATT
*
65767113 AGAGAATGCTATTAGCTATGAAAATAATTCGACTAGGCTTAAAATGTACGAAAATTGAATAAAAA
323 AGAGAATGCTA-TAGCTATGAAAATAATTCAACTAGGCTTAAAATGTACGAAAATTGAATAAAAA
*
65767178 TCATTTTACGAGCCCAGGGG-AAAAGTGTAAATATGACAAAGTTTAAGGGCAAAAATGTAATTT
387 TCATTTTACGAGCCCAGGGGAAAAAGTGTAAATATGACAAAGTTTAAGGGCAAAAATGTAAGTT
65767241 TT
1 TT
65767243 CTATAATATG
Statistics
Matches: 425, Mismatches: 24, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
450 74 0.17
451 279 0.66
452 72 0.17
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.34
Consensus pattern (450 bp):
TTGCATGGCGAAACCATGTCTAGGGTTTTTCAAGCTTCCAAGCTCGATTGCAAGTCCGTTCTAGC
CCCGTTTTTAATGATTTTTATGTTTTTACAATCCCCGTAACAAGATCTATCTATTTCTACCATTA
ATTTGAGCTAGGGTTCATGTTTAAAAATTGACCCATGTATGAGATGCATGCATTTTGAAGTCTAA
TGGTAGAAAATAAGTGTTAGGTGTTAAATAAACGACTTTTACTAAGCAATTTTCGATGAGAACGT
CTGAAAGAACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATTAGA
GAATGCTATAGCTATGAAAATAATTCAACTAGGCTTAAAATGTACGAAAATTGAATAAAAATCAT
TTTACGAGCCCAGGGGAAAAAGTGTAAATATGACAAAGTTTAAGGGCAAAAATGTAAGTT
Found at i:65767863 original size:48 final size:48
Alignment explanation
Indices: 65767810--65767927 Score: 155
Period size: 48 Copynumber: 2.5 Consensus size: 48
65767800 GGTGCCTATG
* * * **
65767810 TAAGACCATGTCTGGGACATGGCATTGGCAATGATATGTGTGCTAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCAATGACATGAGACCTAGTA
* *
65767858 TAAGACCATGTCTGGGACATGGCATCGGCATTGACATGAGACCTTGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCAATGACATGAGACCTAGTA
* *
65767906 TAAGACCATATCTGGGATATGG
1 TAAGACCATGTCTGGGACATGG
65767928 AAAGGATATA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCAATGACATGAGACCTAGTA
Found at i:65773771 original size:43 final size:43
Alignment explanation
Indices: 65773724--65773840 Score: 121
Period size: 42 Copynumber: 2.7 Consensus size: 43
65773714 TCCTAGACGT
* * *
65773724 GGTCTTACATGTAATCAAATATCGATGCCACTATTCTAGACAA
1 GGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAA
* * * *
65773767 GGTCTTACATGAAATCATATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAA
* *
65773809 GATCTTACACGTAAATCACAA-ATCGATGCCAA
1 GGTCTTACATGT-AATCA-AATATCGATGCCAA
65773841 CGTCCGAAAC
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 25 0.42
43 25 0.42
44 10 0.17
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAA
Found at i:65773807 original size:42 final size:43
Alignment explanation
Indices: 65773705--65773861 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
65773695 AGCTTGTACA
* *
65773705 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCTAGACATGGTCTTACATGAAATCAAATATCG
* * * *
65773748 ATGCC-ACTATTCTAGACAAGGTCTTACATGAAATCATATA-CG
1 ATGCCAAC-GTCCTAGACATGGTCTTACATGAAATCAAATATCG
* * * *
65773790 ATGCCAATGTCCCAGACATGATCTTACACGTAAATCACAA-ATCG
1 ATGCCAACGTCCTAGACATGGTCTTACATG-AAATCA-AATATCG
* * *
65773834 ATGCCAACGTCCGAAACGTGGTCTTACA
1 ATGCCAACGTCCTAGACATGGTCTTACA
65773862 CGATAACACA
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 25 0.28
43 39 0.43
44 26 0.29
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACATGGTCTTACATGAAATCAAATATCG
Found at i:65781241 original size:51 final size:52
Alignment explanation
Indices: 65781178--65781315 Score: 169
Period size: 50 Copynumber: 2.7 Consensus size: 52
65781168 CCAAAGCTAT
* * *
65781178 TTGA-TACGCATAGTATCCTGCACTTAGTACTACACACGTGA-TCAA-AGTCA
1 TTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACTCAACAGT-A
* * *
65781228 TTGAGTACACATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTA
1 TTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACTCAACAGTA
*
65781280 -TG-GTACACGTAGTAGCCTGCACTTAGTACTACACAC
1 TTGAGTACACATAGTAGCCTGCACTTAGTACTACACAC
65781316 ATGTATTCAC
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
50 35 0.46
51 34 0.45
52 4 0.05
53 3 0.04
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (52 bp):
TTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACTCAACAGTA
Found at i:65787434 original size:40 final size:41
Alignment explanation
Indices: 65787390--65787486 Score: 135
Period size: 40 Copynumber: 2.4 Consensus size: 41
65787380 TGACTATGAT
* * *
65787390 TGGCACTAAGTGTGTGATTTAATATAGCTTCGGCTATA-AA
1 TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATAGAA
**
65787430 TGGCACTAAGTGTGCGAGTTGGCATAGCTTCGGCTATAGAA
1 TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATAGAA
65787471 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
65787487 TACCGATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 49 0.96
41 2 0.04
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATAGAA
Found at i:65792640 original size:27 final size:27
Alignment explanation
Indices: 65792610--65792702 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 27
65792600 ATCATCAAGC
65792610 TAGTCTCATATCAATACATCATGTCAT
1 TAGTCTCATATCAATACATCATGTCAT
* * * *
65792637 TAGTCTTAGATGAGCATA-ACTCAATCATCAAGT
1 TAGTCTCATATCA--ATACA-TC-AT-GTC-A-T
*
65792670 TAATCTCATATCAATACATCATGTCAT
1 TAGTCTCATATCAATACATCATGTCAT
65792697 TAGTCT
1 TAGTCT
65792703 TAGATGAGCT
Statistics
Matches: 48, Mismatches: 10, Indels: 16
0.65 0.14 0.22
Matches are distributed among these distances:
27 16 0.33
28 2 0.04
29 7 0.15
30 4 0.08
31 7 0.15
32 2 0.04
33 10 0.21
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.35
Consensus pattern (27 bp):
TAGTCTCATATCAATACATCATGTCAT
Found at i:65792686 original size:60 final size:60
Alignment explanation
Indices: 65792593--65792711 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
65792583 CCTATCACAT
*
65792593 TAACTCAATCATCAAGCTAGTCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
1 TAACTCAATCATCAAGCTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
*
65792653 TAACTCAATCATCAAGTTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGC
1 TAACTCAATCATCAAGCTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGC
65792712 TCATCAATTC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (60 bp):
TAACTCAATCATCAAGCTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
Found at i:65800189 original size:47 final size:49
Alignment explanation
Indices: 65799979--65800299 Score: 274
Period size: 47 Copynumber: 6.7 Consensus size: 49
65799969 GGATAAGTTA
* *
65799979 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGG
* * * * **
65800028 TCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-CATCGA-G-G
** * * *
65800080 CTAATGTCATGTCCCAGACATCGTCTTATACTAGC-A-CAACTC-TC-A-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATC-A-TCATCGAGG
*
65800126 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGG
* * * * *
65800173 CCAATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTCGT-TTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGAGG
* * * * *
65800219 CCGATGCCATGTCCCAGACATGGTCTTACACTATCTCTCGTAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGG
65800267 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC
65800300 ACACACATAA
Statistics
Matches: 221, Mismatches: 36, Indels: 33
0.76 0.12 0.11
Matches are distributed among these distances:
44 13 0.06
45 18 0.08
46 29 0.13
47 63 0.29
48 23 0.10
49 39 0.18
50 5 0.02
51 1 0.00
52 30 0.14
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGG
Found at i:65800239 original size:94 final size:93
Alignment explanation
Indices: 65799986--65800301 Score: 320
Period size: 94 Copynumber: 3.3 Consensus size: 93
65799976 TTACCGATGC
* * * *
65799986 CATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCGAAGTCGATGCCATGTCCCAAACATG
1 CATGTCCCAGACATCGTCTTACACTAGC-ACTC-T-ATC-AAGCCGATGCCATGTCCCAGACATG
* *
65800050 GTCTTACACTAGCTCTCATATATATACGTGCTAATG
62 GTCTTACACTAGCTCTCATA-AT-GA-G-GCCAATG
* * *
65800086 TCATGTCCCAGACATCGTCTTATACTAGCACAACTCTC-AGCCGATG-CATGTCCCAGACAT-GT
1 -CATGTCCCAGACATCGTCTTACACTAGCAC-TCTATCAAGCCGATGCCATGTCCCAGACATGGT
* * *
65800148 CTTACACTGGCTATCATCATCGAGGCCAATG
64 CTTACACTAGCTCTCATAAT-GAGGCCAATG
*
65800179 CATGTCCCAGACAT-GTCTTACACTAGCACTCGTTTCAATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATCGTCTTACACTAGCACTC-TATCAA-GCCGATGCCATGTCCCAGACATGGT
* * * *
65800243 CTTACACTATCTCTCGTAATGTGGCCGATG
64 CTTACACTAGCTCTCATAATGAGGCCAATG
65800273 CATGTCCCAGACAT-GTCTTACACTAGCAC
1 CATGTCCCAGACATCGTCTTACACTAGCAC
65800302 ACACATAACC
Statistics
Matches: 185, Mismatches: 23, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
90 1 0.01
91 17 0.09
92 15 0.08
93 13 0.07
94 52 0.28
95 20 0.11
96 17 0.09
97 13 0.07
98 7 0.04
100 3 0.02
101 26 0.14
102 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (93 bp):
CATGTCCCAGACATCGTCTTACACTAGCACTCTATCAAGCCGATGCCATGTCCCAGACATGGTCT
TACACTAGCTCTCATAATGAGGCCAATG
Found at i:65807651 original size:52 final size:49
Alignment explanation
Indices: 65807526--65807844 Score: 236
Period size: 47 Copynumber: 6.7 Consensus size: 49
65807516 ATAAGTTGCC
*
65807526 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
* *
65807575 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGT-ATATATACGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCAT-T-GA-G-GCT
* * ** * *
65807627 GATGCCATGTCCCAGACATCGTCTTATACTAGC-A-CAAC-TCTCA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCAT-TGAGGCT
* * * * *
65807673 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATTATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
* * * * *
65807720 GATG-CATGTGCCAAACAT-GTCTTACAATAGC-ACTCGTC-TTAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCGTCATTGAGGCT
* * * * * *
65807766 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAG--AATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATC-GTCATTGAGGCT
*
65807814 GATG-CATGTCCCAAACAT-GTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
65807845 ACACAAATAA
Statistics
Matches: 218, Mismatches: 37, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 30 0.14
47 61 0.28
48 22 0.10
49 40 0.18
50 4 0.02
51 1 0.00
52 34 0.16
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
Found at i:65807814 original size:94 final size:95
Alignment explanation
Indices: 65807523--65807846 Score: 308
Period size: 94 Copynumber: 3.4 Consensus size: 95
65807513 GGGATAAGTT
* * * *
65807523 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCGTCATTGAGGCTGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGC-ACTCGTC-TT-AAGCTGATGCCATGTCC
* *
65807587 CAGACATGGTCTTACACTAGCTCTC-GTATATATACG
63 CAGACATGGTCTTACACTGGCTCTCAG-A-ATGT--G
* * * * * *
65807623 TGCTGATGCCATGTCCCAGACATCGTCTTATACTAGCACAAC-TC-TCAGCCGATG-CATGTCCC
1 -GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCAC-TCGTCTTAAGCTGATGCCATGTCCC
* ** *
65807685 AGACAT-GTCTTACACTGGCTATCATTATCGAG
64 AGACATGGTCTTACACTGGCTCTCAGAAT-GTG
* *
65807717 GCCGATG-CATGTGCCAAACAT-GTCTTACAATAGCACTCGTCTTAATGCTGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCACTCGTCTTAA-GCTGATGCCATGTCCCA
*
65807780 AACATGGTCTTACACTGGCTCTCAGAATGTG
65 GACATGGTCTTACACTGGCTCTCAGAATGTG
65807811 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCAC
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCAC
65807847 ACAAATAACT
Statistics
Matches: 185, Mismatches: 29, Indels: 25
0.77 0.12 0.10
Matches are distributed among these distances:
90 1 0.01
91 15 0.08
92 14 0.08
93 12 0.06
94 50 0.27
95 21 0.11
96 15 0.08
97 14 0.08
98 6 0.03
99 1 0.01
100 1 0.01
101 34 0.18
102 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCACTCGTCTTAAGCTGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCAGAATGTG
Found at i:65809091 original size:6 final size:6
Alignment explanation
Indices: 65809071--65809158 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
65809061 AAGAAACATT
* *
65809071 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATCAGGTG AT-AGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
65809120 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
65809159 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 5 0.08
6 52 0.79
7 6 0.09
8 3 0.05
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:65809114 original size:31 final size:31
Alignment explanation
Indices: 65809079--65809158 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
65809069 TTATCAGAAC
*
65809079 TAGAATCAAAATCAGAATCAGAATCAGGTGA
1 TAGAATCAAAATCAGAATCAGAATCAGGTAA
* *
65809110 TAGAATCAGAATCAGAATCAGTATCAGGTAA
1 TAGAATCAAAATCAGAATCAGAATCAGGTAA
*
65809141 CAGAATCAAAATCAGAAT
1 TAGAATCAAAATCAGAAT
65809159 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
TAGAATCAAAATCAGAATCAGAATCAGGTAA
Found at i:65811533 original size:49 final size:49
Alignment explanation
Indices: 65811475--65812002 Score: 915
Period size: 49 Copynumber: 10.9 Consensus size: 49
65811465 GTATGAGATG
*
65811475 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
65811524 TATATATGTGATAAGGCATAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
65811573 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
65811622 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
65811669 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
65811716 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
65811765 TATACATGTGATAAGGCCTAATGGCCAATGTGCTGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
65811814 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
65811863 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
65811910 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
65811959 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
65812003 TATATGTGTG
Statistics
Matches: 461, Mismatches: 14, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 137 0.30
49 324 0.70
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:65811897 original size:241 final size:241
Alignment explanation
Indices: 65811474--65812002 Score: 959
Period size: 241 Copynumber: 2.2 Consensus size: 241
65811464 TGTATGAGAT
* *
65811474 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
65811539 GCATAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
66 GCATAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
65811604 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG
131 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG
65811669 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
196 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
65811715 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
* *
65811780 GCCTAATGGCCAATGTGCTGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
66 GCATAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
65811845 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG
131 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG
* * *
65811910 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGT
196 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
65811956 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
65812003 TATATGTGTG
Statistics
Matches: 277, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
241 234 0.84
243 43 0.16
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (241 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCATAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:65812051 original size:48 final size:48
Alignment explanation
Indices: 65811994--65812145 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
65811984 CGATGTGATG
*
65811994 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
65812042 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
65812090 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
65812138 AATGTGAA
1 AATGTGAA
65812146 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:65814860 original size:39 final size:40
Alignment explanation
Indices: 65814806--65814960 Score: 206
Period size: 39 Copynumber: 3.9 Consensus size: 40
65814796 TGTGTATGAA
* *
65814806 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
65814845 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
65814884 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* ** * *
65814924 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGC
65814961 GTTTGAACGA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 62 0.60
40 41 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (40 bp):
TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:65814945 original size:79 final size:79
Alignment explanation
Indices: 65814806--65814960 Score: 222
Period size: 79 Copynumber: 2.0 Consensus size: 79
65814796 TGTGTATGAA
** *
65814806 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
65814871 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * *
65814884 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTA
*
65814949 TGTCCCGAAGGC
65 AGTCCCGAAGGC
65814961 GTTTGAACGA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 25 0.37
79 33 0.49
80 9 0.13
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:65814987 original size:79 final size:78
Alignment explanation
Indices: 65814816--65814998 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 78
65814806 TGTGCGAATT
* ** *
65814816 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
** *
65814881 AATTGTGCGAGTT
66 AATTGAACGAGTA
* * *
65814894 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAG-CCCGAAG
**
65814959 GCGTTTGAACGAGTA
64 GCAATTGAACGAGTA
*
65814974 GCT-ATATCC-GGTTAAACTCCGAAGG
1 G-TGATATCCGGGTTAAGC-CCGAAGG
65814999 TATGTGATTT
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
78 17 0.19
79 46 0.52
80 24 0.27
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
AATTGAACGAGTA
Found at i:65816482 original size:27 final size:27
Alignment explanation
Indices: 65816440--65816614 Score: 251
Period size: 27 Copynumber: 6.5 Consensus size: 27
65816430 AGCCCTGTCC
* * *
65816440 ATGGTAATTTTGTAAATCAAGGGTAAA
1 ATGGTAATTCTATAAATCGAGGGTAAA
*
65816467 ATGGTAATTCTATAAATCGAGTGTAAA
1 ATGGTAATTCTATAAATCGAGGGTAAA
* *
65816494 ATGGTAATTCTGTAAATCGAGGGTAAG
1 ATGGTAATTCTATAAATCGAGGGTAAA
* *
65816521 ACGGTAATTCTATAAATCAAGGGTAAA
1 ATGGTAATTCTATAAATCGAGGGTAAA
*
65816548 ATGGTAATTCCATAAATCGAGGGTAAA
1 ATGGTAATTCTATAAATCGAGGGTAAA
* *
65816575 ACGGTAATTCTATAAATTGAGGGTAAA
1 ATGGTAATTCTATAAATCGAGGGTAAA
65816602 ATGGTAATTCTAT
1 ATGGTAATTCTAT
65816615 CTTATTTTGG
Statistics
Matches: 130, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 130 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
ATGGTAATTCTATAAATCGAGGGTAAA
Found at i:65816647 original size:27 final size:27
Alignment explanation
Indices: 65816617--65816711 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 27
65816607 AATTCTATCT
*
65816617 TATTTTGGTAATTTTACAAATCGAGGA
1 TATTTTGGTAATTTTACAAATCGAGGG
* * *
65816644 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTTGGTAATTTTACAAATCGAGGG
* *
65816671 TACTTTGGTAATTTTACAAGTCGAGGG
1 TATTTTGGTAATTTTACAAATCGAGGG
**
65816698 TATTTCAGTAATTT
1 TATTTTGGTAATTT
65816712 GGTAAACTAA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAATCGAGGG
Found at i:65827126 original size:43 final size:43
Alignment explanation
Indices: 65826989--65827144 Score: 179
Period size: 43 Copynumber: 3.7 Consensus size: 43
65826979 GAATTATGAA
* * *
65826989 ATCCGAGCTCGTTGAGTGGTCTAAGTTCGTGATATATGTGAGA
1 ATCCGAGCTCGTTGAGTGGTCCAAGTTCGTGATATATGTAAGC
* * * *
65827032 ATCCAAACTTGTTGAGTGGTCAAAGTTCGTGATATATGTAA-C
1 ATCCGAGCTCGTTGAGTGGTCCAAGTTCGTGATATATGTAAGC
* * * * *
65827074 ATCCGAGCTCGTTGAGTGGTCCATGTTCTTTATGTATGCAAGC
1 ATCCGAGCTCGTTGAGTGGTCCAAGTTCGTGATATATGTAAGC
* *
65827117 ATCCGAGCTCGTTAAGTGGTCCGAGTTC
1 ATCCGAGCTCGTTGAGTGGTCCAAGTTC
65827145 ATAATAAATA
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 32 0.34
43 62 0.66
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
ATCCGAGCTCGTTGAGTGGTCCAAGTTCGTGATATATGTAAGC
Found at i:65827437 original size:16 final size:17
Alignment explanation
Indices: 65827403--65827437 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
65827393 AAACGTATGA
*
65827403 ATAATGCCTTGGTAAAG
1 ATAACGCCTTGGTAAAG
65827420 ATAACGCCTTGG-AAAG
1 ATAACGCCTTGGTAAAG
65827436 AT
1 AT
65827438 CGATTTATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (17 bp):
ATAACGCCTTGGTAAAG
Found at i:65831094 original size:16 final size:16
Alignment explanation
Indices: 65831073--65831103 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
65831063 CATTATGATA
65831073 TTTTATCTTGGATTTT
1 TTTTATCTTGGATTTT
65831089 TTTTATCTTGGATTT
1 TTTTATCTTGGATTT
65831104 CTATATCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.06, G:0.13, T:0.68
Consensus pattern (16 bp):
TTTTATCTTGGATTTT
Found at i:65831110 original size:15 final size:15
Alignment explanation
Indices: 65831076--65831120 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
65831066 TATGATATTT
* *
65831076 TATCTTGGATTTTTTT
1 TATCTTGGA-TTTCTA
65831092 TATCTTGGATTTCTA
1 TATCTTGGATTTCTA
*
65831107 TATCTTGGACTTCT
1 TATCTTGGATTTCT
65831121 TAATCCTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 17 0.65
16 9 0.35
ACGTcount: A:0.16, C:0.13, G:0.13, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTA
Found at i:65833308 original size:30 final size:29
Alignment explanation
Indices: 65833274--65833337 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
65833264 ATGAATTGGA
65833274 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
65833304 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
65833333 AGCTT
1 AGCTT
65833338 CGGCTATTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:65838327 original size:29 final size:29
Alignment explanation
Indices: 65838294--65838453 Score: 293
Period size: 29 Copynumber: 5.5 Consensus size: 29
65838284 GTGACGAGAT
65838294 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65838323 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
65838352 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65838381 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
65838410 TGGCACTAAGTGTGCCTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
65838439 TCGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
65838454 GAGCTCGAAG
Statistics
Matches: 127, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 127 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:65838471 original size:87 final size:87
Alignment explanation
Indices: 65838294--65838482 Score: 297
Period size: 87 Copynumber: 2.2 Consensus size: 87
65838284 GTGACGAGAT
*
65838294 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATCGCACT
* * * *
65838359 AAGTGTGCGTGCTGGAAATATA
66 AAGTGTGCGAGCTCGAAAGACA
*
65838381 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCCTGCTGGAAATATATCGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATCGCACT
* *
65838446 AAGTGTGCGAGCTCGAAGGGCA
66 AAGTGTGCGAGCTCGAAAGACA
*
65838468 TGGCACTATGTGTGC
1 TGGCACTAAGTGTGC
65838483 GGGCTTAAAT
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 93 1.00
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATCGCACT
AAGTGTGCGAGCTCGAAAGACA
Found at i:65838473 original size:29 final size:29
Alignment explanation
Indices: 65838441--65838513 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
65838431 GAAATATATC
* *
65838441 GCACTAAGTGTGCGAGCTCGAAGGGCATG
1 GCACTAAGTGTGCGAGCTCAAAGCGCATG
* * * *
65838470 GCACTATGTGTGCGGGCTTAAATCGCATG
1 GCACTAAGTGTGCGAGCTCAAAGCGCATG
65838499 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
65838514 AATCGAGTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.22
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTCAAAGCGCATG
Found at i:65838500 original size:87 final size:87
Alignment explanation
Indices: 65838294--65838511 Score: 276
Period size: 87 Copynumber: 2.5 Consensus size: 87
65838284 GTGACGAGAT
* * *
65838294 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCAGGCTGGAAATACATGGCACTAAGTGTGCATGCTGGAAATATATCGCACT
* * * *
65838359 AAGTGTGCGTGCTGGAAATATA
66 AAGTGTGCGAGCTCGAAAGACA
* * *
65838381 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCCTGCTGGAAATATATCGCACT
1 TGGCACTAAGTGTGCAGGCTGGAAATACATGGCACTAAGTGTGCATGCTGGAAATATATCGCACT
* *
65838446 AAGTGTGCGAGCTCGAAGGGCA
66 AAGTGTGCGAGCTCGAAAGACA
* * * *
65838468 TGGCACTATGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGC
1 TGGCACTAAGTGTGCAGGCTGGAAAT-ACATGGCACTAAGTGTGC
65838512 GAAATCGAGT
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
86 4 0.03
87 112 0.97
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCAGGCTGGAAATACATGGCACTAAGTGTGCATGCTGGAAATATATCGCACT
AAGTGTGCGAGCTCGAAAGACA
Found at i:65845624 original size:29 final size:29
Alignment explanation
Indices: 65845591--65845750 Score: 311
Period size: 29 Copynumber: 5.5 Consensus size: 29
65845581 GTGACGAGAT
65845591 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65845620 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
65845649 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65845678 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65845707 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65845736 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
65845751 GAGCTCGAAG
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 129 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:65845767 original size:29 final size:29
Alignment explanation
Indices: 65845735--65845810 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
65845725 CTGGAAATAT
* *
65845735 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
65845764 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
65845793 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
65845811 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:65845768 original size:87 final size:87
Alignment explanation
Indices: 65845591--65845779 Score: 315
Period size: 87 Copynumber: 2.2 Consensus size: 87
65845581 GTGACGAGAT
65845591 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
* * * *
65845656 AAGTGTGCGTGCTGGAAATATA
66 AAGTGTGCGAGCTCGAAAGACA
65845678 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
* *
65845743 AAGTGTGCGAGCTCGAAGGGCA
66 AAGTGTGCGAGCTCGAAAGACA
*
65845765 TGGCACTATGTGTGC
1 TGGCACTAAGTGTGC
65845780 GGGCTTAAAT
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 95 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
AAGTGTGCGAGCTCGAAAGACA
Found at i:65845797 original size:87 final size:87
Alignment explanation
Indices: 65845591--65845808 Score: 294
Period size: 87 Copynumber: 2.5 Consensus size: 87
65845581 GTGACGAGAT
* *
65845591 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCAGGCTGGAAATACATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
* * * *
65845656 AAGTGTGCGTGCTGGAAATATA
66 AAGTGTGCGAGCTCGAAAGACA
* *
65845678 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCAGGCTGGAAATACATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
* *
65845743 AAGTGTGCGAGCTCGAAGGGCA
66 AAGTGTGCGAGCTCGAAAGACA
* * * *
65845765 TGGCACTATGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGC
1 TGGCACTAAGTGTGCAGGCTGGAAAT-ACATGGCACTAAGTGTGC
65845809 GAAATCGAGT
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
86 4 0.03
87 114 0.97
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCAGGCTGGAAATACATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
AAGTGTGCGAGCTCGAAAGACA
Found at i:65848414 original size:22 final size:22
Alignment explanation
Indices: 65848389--65848435 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
65848379 CACAAGGTCT
65848389 TGTCCCTGTGTCCACACGGGCG
1 TGTCCCTGTGTCCACACGGGCG
65848411 TGTCCCTGTGTCCACACGGGCG
1 TGTCCCTGTGTCCACACGGGCG
65848433 TGT
1 TGT
65848436 GACCCTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.09, C:0.34, G:0.32, T:0.26
Consensus pattern (22 bp):
TGTCCCTGTGTCCACACGGGCG
Found at i:65860536 original size:40 final size:40
Alignment explanation
Indices: 65860487--65860812 Score: 356
Period size: 40 Copynumber: 8.2 Consensus size: 40
65860477 TCTTCGGAAT
* * *
65860487 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** * *
65860526 TTAACCCGGATTTGGTAACTTGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
65860566 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
65860606 TTAGCCCGGATATAATC-ACGAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * *
65860646 TTAGCCCGGGTATAACAACTGGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
65860686 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * *
65860726 TTAGCCCAGG-TATAACAACTCGCACGAATGCCTTCGGGTT
1 TTAGCCC-GGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
65860766 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
65860806 TTAGCCC
1 TTAGCCC
65860813 AGGTATCATT
Statistics
Matches: 236, Mismatches: 43, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
39 7 0.03
40 224 0.95
41 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:65860614 original size:80 final size:80
Alignment explanation
Indices: 65860478--65860812 Score: 460
Period size: 80 Copynumber: 4.2 Consensus size: 80
65860468 AGCCGAGTCT
* * * * * * **
65860478 CTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
* * * *
65860541 TAACTTGTACAAATGC
65 TCACTAGCATAAATGC
* *
65860557 CTTCGGGTCTTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
*
65860622 CACGAGCATAAATGC
66 CACTAGCATAAATGC
* *
65860637 CTTCGGGACTTAGCCCGGGTATAACAACTGGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
65860702 CACTAGCATAAATGC
66 CACTAGCATAAATGC
* *
65860717 CTTCGGGACTTAGCCCAGG-TATAACAACTCGCACGAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCC-GGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATAA
65860781 TCACTAGCATAAATGC
65 TCACTAGCATAAATGC
65860797 CTTCGGGACTTAGCCC
1 CTTCGGGACTTAGCCC
65860813 AGGTATCATT
Statistics
Matches: 232, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
79 10 0.04
80 218 0.94
81 4 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
CACTAGCATAAATGC
Found at i:65860813 original size:80 final size:80
Alignment explanation
Indices: 65860514--65860818 Score: 468
Period size: 80 Copynumber: 3.8 Consensus size: 80
65860504 CAAGCACAAT
* * ** * * * * *
65860514 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGTACAAATGCCTTCGGGTCTTAGCCC-GGATA
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAGG-TA
*
65860578 TAACAACTTGCACGAA
65 TAACAACTCGCACGAA
* *
65860594 TGCCTTCGGGTCTTAGCCCGGATATAATCACGAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAGGTAT
*
65860659 AACAACTGGCACGAA
66 AACAACTCGCACGAA
65860674 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAGGTAT
65860739 AACAACTCGCACGAA
66 AACAACTCGCACGAA
*
65860754 TGCCTTCGGGTTTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAGGTAT
65860819 CATTCAAATG
Statistics
Matches: 209, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
80 207 0.99
81 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAGGTAT
AACAACTCGCACGAA
Found at i:65866595 original size:46 final size:46
Alignment explanation
Indices: 65866462--65866596 Score: 126
Period size: 50 Copynumber: 2.8 Consensus size: 46
65866452 TTAGCAAAAT
* *
65866462 CCGTTCTGTTAACTGGTAGCGTTGCTGTGATATTTACGGCCTATAG
1 CCGTTCTGTTAACTGGTAGCGTTGCTGTGATATTTATGGACTATAG
* ** * ** * * *
65866508 CCGTCCTGTATAAGGCTTTTAGCCTTTTTTATGATACTTATGGATTATAG
1 CCGTTCTGT-TAA--CTGGTAG-CGTTGCTGTGATATTTATGGACTATAG
*
65866558 CCGTTCTGTTAACTGGCAGCGTTGCTGTGATATTTATGG
1 CCGTTCTGTTAACTGGTAGCGTTGCTGTGATATTTATGG
65866597 CCTTTAGTCG
Statistics
Matches: 65, Mismatches: 20, Indels: 8
0.70 0.22 0.09
Matches are distributed among these distances:
46 23 0.35
47 7 0.11
49 8 0.12
50 27 0.42
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.40
Consensus pattern (46 bp):
CCGTTCTGTTAACTGGTAGCGTTGCTGTGATATTTATGGACTATAG
Found at i:65866647 original size:22 final size:22
Alignment explanation
Indices: 65866602--65866654 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
65866592 TATGGCCTTT
* *
65866602 AGTCGTCCTGTCTATGAAGTTG
1 AGTCGTCCTGTCTATCAAGGTG
65866624 AGTCGTCCTGTCTA-CAACGGTG
1 AGTCGTCCTGTCTATCAA-GGTG
*
65866646 AGCCGTCCT
1 AGTCGTCCT
65866655 ATTGACTTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.17, C:0.26, G:0.26, T:0.30
Consensus pattern (22 bp):
AGTCGTCCTGTCTATCAAGGTG
Found at i:65875896 original size:47 final size:47
Alignment explanation
Indices: 65875843--65875939 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
65875833 ATGGCTAAAT
*
65875843 ATAAACATTACAAAACCTATTCAAAGTACTTCTAGCCTATACATGCC
1 ATAAACATTACAAAACCTATCCAAAGTACTTCTAGCCTATACATGCC
65875890 ATAAACATTACAAAACCTATCCAAAGTACTTCTAGCCTATACATGCC
1 ATAAACATTACAAAACCTATCCAAAGTACTTCTAGCCTATACATGCC
65875937 ATA
1 ATA
65875940 CTTTACTAGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.27
Consensus pattern (47 bp):
ATAAACATTACAAAACCTATCCAAAGTACTTCTAGCCTATACATGCC
Found at i:65876614 original size:33 final size:33
Alignment explanation
Indices: 65876571--65876634 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
65876561 ATACAGCAAC
* * *
65876571 AGTCTAGGCCTGAGCCCTATTCATTAACAGTAT
1 AGTCTAGGCCTAAGCCCTATGCAATAACAGTAT
* *
65876604 AGTCTGGGCCTAAGTCCTATGCAATAACAGT
1 AGTCTAGGCCTAAGCCCTATGCAATAACAGT
65876635 GTGGGCCTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (33 bp):
AGTCTAGGCCTAAGCCCTATGCAATAACAGTAT
Found at i:65881915 original size:21 final size:21
Alignment explanation
Indices: 65881889--65881938 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
65881879 CCTGACCCCG
*
65881889 GCCTCTCGGTGGCTGCTGACC
1 GCCTCTCAGTGGCTGCTGACC
*
65881910 GCCTCTCAGTGGCTGCTTACC
1 GCCTCTCAGTGGCTGCTGACC
*
65881931 ACCTCTCA
1 GCCTCTCA
65881939 CAGACTGAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.10, C:0.40, G:0.24, T:0.26
Consensus pattern (21 bp):
GCCTCTCAGTGGCTGCTGACC
Found at i:65890348 original size:17 final size:17
Alignment explanation
Indices: 65890326--65890367 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
65890316 ATTGAAATTA
**
65890326 TGTGAATTTTGTGTATT
1 TGTGAATTTTACGTATT
65890343 TGTGAATTTTACGTATT
1 TGTGAATTTTACGTATT
*
65890360 TATGAATT
1 TGTGAATT
65890368 AGGGACTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.24, C:0.02, G:0.19, T:0.55
Consensus pattern (17 bp):
TGTGAATTTTACGTATT
Found at i:65906903 original size:49 final size:49
Alignment explanation
Indices: 65906723--65906918 Score: 214
Period size: 50 Copynumber: 3.9 Consensus size: 49
65906713 TCTATTGTGA
* * * *
65906723 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATA-TGT
* * * ** * *
65906774 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT-ATGT
* *
65906824 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA-TATGT
* *
65906873 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
65906919 GCTTCGGCTA
Statistics
Matches: 123, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
48 2 0.02
49 40 0.33
50 45 0.37
51 36 0.29
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATATGT
Found at i:65909908 original size:15 final size:15
Alignment explanation
Indices: 65909888--65909952 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
65909878 GTATCTTGGG
65909888 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
65909903 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
65909918 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
65909933 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
65909947 TTTCTT
1 TTTCTT
65909953 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:65909920 original size:30 final size:31
Alignment explanation
Indices: 65909884--65909952 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
65909874 TATCGTATCT
65909884 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
65909914 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
65909944 -GGTTTTCTT
1 TGGGTTTCTT
65909953 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:65915176 original size:14 final size:15
Alignment explanation
Indices: 65915113--65915176 Score: 64
Period size: 14 Copynumber: 4.4 Consensus size: 15
65915103 GTATCTTGGG
65915113 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
65915128 TTT-TTTATTCTGGG
1 TTTCTTTATTCTGGA
65915142 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
65915157 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
65915171 TTTCTT
1 TTTCTT
65915177 GTTATCTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
14 25 0.60
15 13 0.31
16 4 0.10
ACGTcount: A:0.09, C:0.12, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:65918474 original size:80 final size:79
Alignment explanation
Indices: 65918342--65918490 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
65918332 ATTGAATGAT
*
65918342 ATCCGGGCTAAACCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
65918407 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
65918421 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAA-ACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
65918484 TTTGTGC
63 ATTGTGC
65918491 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (79 bp):
ATCCGGGCTAAACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:65918504 original size:40 final size:40
Alignment explanation
Indices: 65918340--65918506 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
65918330 AAATTGAATG
* * *
65918340 ATATCCGGGCTAA-ACCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGAGATT
* * * **
65918379 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
* *
65918419 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGAGATT
* * *
65918459 TTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GAGATT
65918499 ATATCCGG
1 ATATCCGG
65918507 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 16 0.16
40 84 0.82
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
Found at i:65918505 original size:80 final size:79
Alignment explanation
Indices: 65918340--65918506 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
65918330 AAATTGAATG
*
65918340 ATATCCGGGCTAAACCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
65918405 TTGTGCTAGTGGCT
66 TTGTGCTAGTGACT
* * * * *
65918419 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTTTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAA-ACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
65918482 CATTTGTGC-ACGTGATT
63 CAATTGTGCTA-GTGACT
65918499 ATATCCGG
1 ATATCCGG
65918507 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 17 0.23
80 57 0.77
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGACT
Found at i:65922038 original size:12 final size:12
Alignment explanation
Indices: 65922021--65922046 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
65922011 TTTAAGCCCG
65922021 CACACATAGTGC
1 CACACATAGTGC
65922033 CACACATAGTGC
1 CACACATAGTGC
65922045 CA
1 CA
65922047 TACCCTTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.35, G:0.15, T:0.15
Consensus pattern (12 bp):
CACACATAGTGC
Found at i:65922121 original size:29 final size:29
Alignment explanation
Indices: 65922081--65922192 Score: 224
Period size: 29 Copynumber: 3.9 Consensus size: 29
65922071 TGCCGTATTT
65922081 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
65922110 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
65922139 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
65922168 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
65922193 ATCTCGTCAC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:65923939 original size:46 final size:47
Alignment explanation
Indices: 65923759--65923920 Score: 183
Period size: 46 Copynumber: 3.5 Consensus size: 47
65923749 GGATGTCACA
* *
65923759 GGACTCAACTCAACGAGCTCGG-GCGTTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGAGCATTCGCATCCATAAGTGAACTC
* * * *
65923805 GGACGCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTC
1 GGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCATCCATAAGTGAACTC
*
65923852 GGACTCAACTCAACAAGTTCGGA-CATTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGAGCATTCGCATCCATAAGTGAACTC
65923898 GGACTCAACTCAACGAGTTCGGA
1 GGACTCAACTCAACGAGTTCGGA
65923921 TGCTTAACCA
Statistics
Matches: 95, Mismatches: 12, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 48 0.51
47 27 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (47 bp):
GGACTCAACTCAACGAGTTCGGAGCATTCGCATCCATAAGTGAACTC
Found at i:65928699 original size:42 final size:42
Alignment explanation
Indices: 65928634--65928720 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
65928624 AACTCGTACA
* *
65928634 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCTAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATAT-G
*
65928677 ATGCCACTGT-CCAGACAG-GGTCTTACATGAAATCAAATATG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGAAATCAAATATG
65928718 ATG
1 ATG
65928721 TTGATGTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
41 4 0.10
42 26 0.65
43 10 0.25
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATG
Found at i:65930580 original size:37 final size:37
Alignment explanation
Indices: 65930528--65930680 Score: 114
Period size: 37 Copynumber: 4.1 Consensus size: 37
65930518 GTTTAAGTTA
* *
65930528 TTAATTAAGTTATAATTTAGACAACTTTAATAT-GAGT
1 TTAATTATGTCATAATTTAGACAACTTTAATATAG-GT
* *
65930565 TTAATTATGTCATAATTTGGACATA-TTTAATAAAGGTTT
1 TTAATTATGTCATAATTTAGACA-ACTTTAATATAGG--T
* * * *
65930604 TTAATTATGTCATAGCA-TAAGACATCTTAAATATATGT
1 TTAATTATGTCATA--ATTTAGACAACTTTAATATAGGT
* * * * *
65930642 TTAAATATGTCCTAGTTTAGACACCTTTAATATATGT
1 TTAATTATGTCATAATTTAGACAACTTTAATATAGGT
65930679 TT
1 TT
65930681 TGTTTAGACC
Statistics
Matches: 92, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
37 48 0.52
38 15 0.16
39 15 0.16
40 13 0.14
41 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.44
Consensus pattern (37 bp):
TTAATTATGTCATAATTTAGACAACTTTAATATAGGT
Found at i:65944222 original size:40 final size:40
Alignment explanation
Indices: 65944165--65944388 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
65944155 TCGAATGATG
* * *
65944165 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
65944205 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
65944245 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
65944284 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
65944324 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
65944365 --CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65944389 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 57 0.35
40 98 0.59
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:65944301 original size:79 final size:80
Alignment explanation
Indices: 65944165--65944388 Score: 296
Period size: 79 Copynumber: 2.8 Consensus size: 80
65944155 TCGAATGATG
* * * *
65944165 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
* *
65944228 TTGTGCGAGTTACTAAT
64 TTGTGCGAGTCACTAAA
* *
65944245 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
65944309 GTGCGAGTCACTAAA
66 GTGCGAGTCACTAAA
* *
65944324 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA--CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
65944387 TG
65 TG
65944389 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 83 0.65
80 42 0.33
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTCACTAAA
Found at i:65944379 original size:119 final size:119
Alignment explanation
Indices: 65944165--65944386 Score: 315
Period size: 119 Copynumber: 1.9 Consensus size: 119
65944155 TCGAATGATG
* *
65944165 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
**
65944230 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
* * **
65944284 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCAT
*
65944347 TTGTGCGAGTTACT-ATAACGGGCTATGTCCCGAAGGCATT
64 TTGTGCGAGTTACTAATAACGGGCTAAG-CCCGAAGGCATT
65944387 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
118 11 0.12
119 73 0.80
120 7 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
Found at i:65944395 original size:119 final size:119
Alignment explanation
Indices: 65944165--65944421 Score: 308
Period size: 119 Copynumber: 2.2 Consensus size: 119
65944155 TCGAATGATG
* * *
65944165 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
** **
65944230 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTA-CTAAA
66 GTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGAACGAG-TAGCTAAA
* **
65944284 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
65944347 TTGTGCGAGTTACT-ATAACGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTGCGAGTTACTAATAACGGGCTAAG-CCCGAAGGCATTGGAACGAGTAGCTAAA
* *
65944403 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
65944422 TACGTGATTC
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
118 27 0.23
119 85 0.71
120 7 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAAA
Found at i:65952326 original size:40 final size:39
Alignment explanation
Indices: 65952269--65952489 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 39
65952259 TCGAATGATG
* * *
65952269 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
65952309 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
65952349 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
65952387 TCC-GG-TAAGCCCGAAGGCATTTGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
65952424 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
65952465 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
65952490 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
36 14 0.09
37 21 0.13
38 21 0.13
39 13 0.08
40 82 0.51
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:65954668 original size:37 final size:37
Alignment explanation
Indices: 65954605--65954712 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
65954595 TAGCTCGAAT
* * *
65954605 AATCCCCACACGTAGTTATCGAGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
65954642 AATCTCCACACGTAGTCATCGGGTCTTACCCGTACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
65954679 AATCTCCACACGTAGTCATCGGGTCTTACACGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
65954713 ATATATTTCC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:65954905 original size:48 final size:48
Alignment explanation
Indices: 65954845--65955142 Score: 497
Period size: 48 Copynumber: 6.2 Consensus size: 48
65954835 CGGCCACAAT
*
65954845 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
65954893 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* **
65954941 ATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
65954989 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* * *
65955037 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTCACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
65955085 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
65955133 ACATATATAT
1 ATATACATAT
65955143 ATTTATCTTG
Statistics
Matches: 232, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 232 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:65958656 original size:58 final size:58
Alignment explanation
Indices: 65958545--65958709 Score: 260
Period size: 58 Copynumber: 2.9 Consensus size: 58
65958535 CCACTGACCG
* *
65958545 ATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTACCA
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCA
* **
65958602 ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACTG
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCA
* *
65958660 ATCTCGCACACATAGTGCTCGGTTAACGGAATTTGCACACACAGTGCCTC
1 ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
65958710 TAATCATTCG
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
57 25 0.25
58 74 0.75
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (58 bp):
ATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCA
Found at i:65958697 original size:29 final size:29
Alignment explanation
Indices: 65958548--65958706 Score: 114
Period size: 29 Copynumber: 5.5 Consensus size: 29
65958538 CTGACCGATC
* *
65958548 TCGCACACATAGTGCTCGGTTGAA--GAAC
1 TCGCACACACAGTGCTCGGTT-AACGGAAT
** *
65958576 TCGCACACACAGTGCCTCAATT-AC-CAAT
1 TCGCACACACAGTG-CTCGGTTAACGGAAT
* * *
65958604 CTCGCACACATAATGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAACGGAAT
** *
65958634 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAACGGAAT
*
65958662 CTCGCACACATAGTGCTCGGTTAACGGAAT
1 -TCGCACACACAGTGCTCGGTTAACGGAAT
*
65958692 TTGCACACACAGTGC
1 TCGCACACACAGTGC
65958707 CTCTAATCAT
Statistics
Matches: 99, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
27 1 0.01
28 27 0.27
29 61 0.62
30 10 0.10
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAACGGAAT
Found at i:65958922 original size:43 final size:43
Alignment explanation
Indices: 65958861--65959035 Score: 305
Period size: 43 Copynumber: 4.1 Consensus size: 43
65958851 CCTTGCTCGA
**
65958861 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAT
* *
65958904 ATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAT
*
65958947 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAT
65958990 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAT
65959033 ATC
1 ATC
65959036 CCGAGTTTCA
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 126 1.00
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCGAATACAT
Found at i:65960803 original size:36 final size:37
Alignment explanation
Indices: 65960733--65960871 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
65960723 CGAATAAGCC
* *
65960733 CCACACGTAGTTATCGGGTCTTACCCGGAAAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
65960770 CCACACGTAGTCATC-GGCCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
65960806 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
65960843 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
65960872 ATATATTTCC
Statistics
Matches: 96, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 34 0.35
37 62 0.65
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:65960852 original size:73 final size:74
Alignment explanation
Indices: 65960733--65960871 Score: 235
Period size: 73 Copynumber: 1.9 Consensus size: 74
65960723 CGAATAAGCC
*
65960733 CCACACGTAGTTATCGGGTCTTACCCGGAAAAAATCTCCACACGTAGTCATC-GGCCTTACCCGG
1 CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCTCCACACGTAGTCATCGGGCCTTACCCGG
65960797 ACAAAATCT
66 ACAAAATCT
* * *
65960806 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGG
1 CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCTCCACACGTAGTCATCGGGCCTTACCCGG
65960871 A
66 A
65960872 ATATATTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
73 49 0.80
74 12 0.20
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (74 bp):
CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCTCCACACGTAGTCATCGGGCCTTACCCGG
ACAAAATCT
Found at i:65962712 original size:40 final size:40
Alignment explanation
Indices: 65962657--65962866 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
65962647 AACATTGAAA
65962657 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
65962697 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
65962737 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
65962777 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
65962816 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
65962857 CTATATCCGG
1 ATATATCCGG
65962867 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:65964389 original size:48 final size:48
Alignment explanation
Indices: 65964326--65964623 Score: 461
Period size: 48 Copynumber: 6.2 Consensus size: 48
65964316 CGGCCACAAT
* *
65964326 ATATACACATTTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
65964374 ATATACATATCTCATACATATTTCACATTAGCCATTCAGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* ** * *
65964422 ATATATATATCTCATACATATTTCATGTTAGCGATTCAGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
65964470 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
65964518 ATATACATATCTCATACATATTTCATATTAGCCTTTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
65964566 ATATACATATCTCATGCATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
65964614 ACATATATAT
1 ATATACATAT
65964624 ATTTATCTTG
Statistics
Matches: 228, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 228 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:65966396 original size:20 final size:20
Alignment explanation
Indices: 65966371--65966408 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65966361 GTTTATTCGC
*
65966371 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
65966391 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
65966409 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:65977144 original size:37 final size:37
Alignment explanation
Indices: 65977102--65977176 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
65977092 TGAAGGGTGC
*
65977102 CTAAGATTTTGGAGAAGAATCTGTGTTTTGAAGGATA
1 CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
*
65977139 CTAAGATTTTGGGGAAGAATCTGTGTTTCGAAGGATA
1 CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
65977176 C
1 C
65977177 CGAGTTGATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (37 bp):
CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
Found at i:65989015 original size:28 final size:28
Alignment explanation
Indices: 65988975--65989053 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
65988965 GCAATCAAAT
* *
65988975 ATGGTACTCAGTGTGCGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
65989003 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
65989031 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
65989054 CAAATGATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:65989374 original size:40 final size:40
Alignment explanation
Indices: 65989226--65989373 Score: 145
Period size: 41 Copynumber: 3.6 Consensus size: 40
65989216 AGGGCTTCGG
*
65989226 GCCTAGCAGGCTATAATGCCGGTGAAATGATATTGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGA-ATTGGGCTTAAA
* * * *
65989269 GCCTAGCAGGCAAAATGCCGGTGAATGAGTTTAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGA-ATTGGGCTTAAA
* *** *
65989310 GTCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATT-GGGCTTAAA
*
65989350 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
65989374 TTTGATAAAA
Statistics
Matches: 83, Mismatches: 20, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
39 2 0.02
40 28 0.34
41 31 0.37
42 10 0.12
43 12 0.14
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (40 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTGGGCTTAAA
Found at i:65995288 original size:28 final size:28
Alignment explanation
Indices: 65995248--65995326 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
65995238 GCAATCAAAT
* * *
65995248 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
65995276 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
65995304 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
65995327 CAAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:66009808 original size:47 final size:44
Alignment explanation
Indices: 66009749--66009862 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 44
66009739 TCCGAAATCA
66009749 TTGAGTTGAGTCCGAGTTCGTGA-GATGT-AACTAGGCATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCGTGAGGATGTGAAC---GC--CCGAGCTCG
* *
66009796 TTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTC-GTGA-GGATGTGAACGCCCGAGCTCG
66009842 TTGAGTTGAGTCCGAGTTCGT
1 TTGAGTTGAGTCCGAGTTCGT
66009863 TTATGGGCGG
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
45 1 0.02
46 28 0.47
47 19 0.32
48 4 0.07
50 5 0.08
51 3 0.05
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.30
Consensus pattern (44 bp):
TTGAGTTGAGTCCGAGTTCGTGAGGATGTGAACGCCCGAGCTCG
Found at i:66012415 original size:29 final size:29
Alignment explanation
Indices: 66012382--66012542 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
66012372 GTGACGAGAT
66012382 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
66012411 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
66012440 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
66012469 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
66012498 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
66012527 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
66012543 GGCTTAAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:66020455 original size:29 final size:29
Alignment explanation
Indices: 66020422--66020582 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
66020412 GTGACGAGAT
66020422 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
66020451 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
66020480 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
66020509 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
66020538 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
66020567 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
66020583 GGCTTAAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:66035508 original size:17 final size:18
Alignment explanation
Indices: 66035483--66035520 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
66035473 TTTGTTTTGT
66035483 TTTAATTATT-ATTAACC
1 TTTAATTATTAATTAACC
* *
66035500 TTTACTTATTAATTTACC
1 TTTAATTATTAATTAACC
66035518 TTT
1 TTT
66035521 TTAACCTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTAATTATTAATTAACC
Found at i:66035510 original size:14 final size:15
Alignment explanation
Indices: 66035491--66035530 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
66035481 GTTTTAATTA
66035491 TTATTAACCTTTA-C
1 TTATTAACCTTTACC
66035505 TTATTAA--TTTACC
1 TTATTAACCTTTACC
*
66035518 TTTTTAACCTTTA
1 TTATTAACCTTTA
66035531 ATAATAACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
12 4 0.18
13 7 0.32
14 7 0.32
15 4 0.18
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATTAACCTTTACC
Found at i:66037558 original size:24 final size:25
Alignment explanation
Indices: 66037507--66037574 Score: 102
Period size: 24 Copynumber: 2.7 Consensus size: 25
66037497 TCATGGTCGA
* *
66037507 TAAGCTCCTCTTGAGCTGATAAACAG
1 TAAGCT-CTATTGAGCTGAGAAACAG
66037533 TAAGCTCTATTGAGCTG-GAAACAG
1 TAAGCTCTATTGAGCTGAGAAACAG
66037557 TAAGCTCTATTGAGCTGA
1 TAAGCTCTATTGAGCTGA
66037575 ATAGTAAGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
24 23 0.59
25 10 0.26
26 6 0.15
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (25 bp):
TAAGCTCTATTGAGCTGAGAAACAG
Found at i:66037658 original size:23 final size:23
Alignment explanation
Indices: 66037530--66037663 Score: 98
Period size: 23 Copynumber: 5.8 Consensus size: 23
66037520 AGCTGATAAA
* *
66037530 CAGTAAGCTC-TATTGAGCTGGAAA
1 CAGTAAGCTCATA-CGAGCT-GAAT
*
66037554 CAGTAAGCTC-TATTGAGCTGAAT
1 CAGTAAGCTCATA-CGAGCTGAAT
** * *
66037577 -AGTAAGCTTTTTCAAGCTGAAT
1 CAGTAAGCTCATACGAGCTGAAT
* * *
66037599 CGGTAAGCTTCAATA--AGCTAAAA
1 CAGTAAGC-TC-ATACGAGCTGAAT
66037622 CAGTAAGCTCATACGAGCTGAAT
1 CAGTAAGCTCATACGAGCTGAAT
66037645 CAGTAAGCTCATACGAGCT
1 CAGTAAGCTCATACGAGCT
66037664 ATGGTGAGTT
Statistics
Matches: 90, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
21 3 0.03
22 18 0.20
23 48 0.53
24 20 0.22
25 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (23 bp):
CAGTAAGCTCATACGAGCTGAAT
Found at i:66040936 original size:172 final size:172
Alignment explanation
Indices: 66040638--66041145 Score: 794
Period size: 169 Copynumber: 3.0 Consensus size: 172
66040628 CTGAATGATC
* *
66040638 TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGAAAGTTTTCGTGTACCCAATAAT
1 TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
66040703 ATTCCGAATGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTTCCGAGGAGGGCATGTTAA
66 ATTCCGAATGTTCAACGGGTAATGCAATGGATGATGAAATGAAAG-TCCGAGGAGGGCATGTTAA
66040768 TGAAGGTATGCTTGTATACTATACTACGAATGTGTACAAG-TA
130 TGAAGGTATGCTTGTATACTATACTACGAATGTGTACAAGATA
*
66040810 TGAGGTAGCTTTGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
1 TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
* * * *
66040875 ATTCCAAATGTTTAACGGGTAATGCAATGGATGATGAAATGAAAGTCCTAAGGAAGGCATGTTAA
66 ATTCCGAATGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTCC-GAGGAGGGCATGTTAA
* * ** *
66040940 TGAAGGTATGCTTGTAT-CCAT--TGCGAGCGCTG-A-ATGATA
130 TGAAGGTATGCTTGTATACTATACTACGAATG-TGTACAAGATA
* *
66040979 TGAGGTAGCTTCGGCTACATATGTTTATGTCACACTTATGTGCAAGTTTTCATGTATCCAATAAT
1 TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
* *
66041044 ATTCCGAGTGTTCAACGGGTAATGGAATGGATGATGAAATGAAAGTCCCGAGGAGGGCATGTTAA
66 ATTCCGAATGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGT-CCGAGGAGGGCATGTTAA
66041109 TGAAGGTATGCTTGTATACTATACTACGAATGTGTAC
130 TGAAGGTATGCTTGTATACTATACTACGAATGTGTAC
66041146 TCCAAACCCA
Statistics
Matches: 302, Mismatches: 25, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
168 2 0.01
169 143 0.47
170 7 0.02
171 8 0.03
172 142 0.47
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (172 bp):
TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
ATTCCGAATGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTCCGAGGAGGGCATGTTAAT
GAAGGTATGCTTGTATACTATACTACGAATGTGTACAAGATA
Found at i:66043255 original size:24 final size:24
Alignment explanation
Indices: 66043223--66043285 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
66043213 AATCTCAAAT
66043223 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
66043247 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
66043271 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
66043286 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:66047778 original size:28 final size:28
Alignment explanation
Indices: 66047746--66047844 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
66047736 GCAATAAGCC
*
66047746 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
66047774 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
66047802 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
66047831 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66047845 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:66050095 original size:48 final size:48
Alignment explanation
Indices: 66050042--66050138 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
66050032 AACTGTAAAA
66050042 ATGCTTACCAAGAAATTAAAGGGATTTCAGCAGTACCTCAGGAAGAAT
1 ATGCTTACCAAGAAATTAAAGGGATTTCAGCAGTACCTCAGGAAGAAT
66050090 ATGCTTACCAAGAAATTAAAGGGATTTCAGCAGTACCTCAGGAAGAAT
1 ATGCTTACCAAGAAATTAAAGGGATTTCAGCAGTACCTCAGGAAGAAT
66050138 A
1 A
66050139 GGCCAAGAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (48 bp):
ATGCTTACCAAGAAATTAAAGGGATTTCAGCAGTACCTCAGGAAGAAT
Found at i:66060882 original size:20 final size:20
Alignment explanation
Indices: 66060859--66060896 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
66060849 CACATCCAAA
*
66060859 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
66060879 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
66060897 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:66071477 original size:29 final size:29
Alignment explanation
Indices: 66071441--66071603 Score: 202
Period size: 29 Copynumber: 5.6 Consensus size: 29
66071431 AATAAACGAT
***
66071441 CTCGCACACTTAGTGCCATGCGATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
66071470 CTCGCACACATAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* *
66071499 TTTGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
66071528 TTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* ** *
66071557 TTCGCACACTTAGTGCCATA-CCTTCCAAG
1 CTCGCACACTTAGTGCCATATAATT-TAAG
*
66071586 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
66071604 ATCTTGTCAC
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
28 2 0.02
29 118 0.98
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATATAATTTAAG
Found at i:66078472 original size:40 final size:40
Alignment explanation
Indices: 66078427--66078594 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
66078417 CGGAATACAA
66078427 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
66078467 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
66078507 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
66078547 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
66078587 CCGGATAT
1 CCGGATAT
66078595 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:66086499 original size:40 final size:40
Alignment explanation
Indices: 66086454--66086621 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
66086444 CGGAATACAA
66086454 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
66086494 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
66086534 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
66086574 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
66086614 CCGGATAT
1 CCGGATAT
66086622 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:66088429 original size:20 final size:20
Alignment explanation
Indices: 66088406--66088443 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
66088396 CACATCCAAA
*
66088406 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
66088426 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
66088444 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:66091341 original size:50 final size:50
Alignment explanation
Indices: 66091269--66091619 Score: 313
Period size: 50 Copynumber: 7.0 Consensus size: 50
66091259 TAAGATGGTT
*
66091269 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAG
* * * * *
66091319 TTAGGTCGCATGTGTTGTACTAAGTGCAGGCTACTA--TGCATACCCAAAAAT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACCTG--TA-CCAGATAG
* * * * * *
66091370 TTCA-ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAG
** *
66091420 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAG
* * * *
66091469 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC-GTA-CATGACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCA-GA-TAG
* * * * * * *
66091520 TTCA-ATCACATGTGTAGTACTAAGTGTAGGATATTACATGTATCAGATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAG
* *
66091570 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGC-GTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCAGATAG
66091620 CTTCGGTTAC
Statistics
Matches: 239, Mismatches: 46, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
48 4 0.02
49 41 0.17
50 118 0.49
51 70 0.29
52 4 0.02
53 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAG
Done.