Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 228 of 345
Found at i:66432594 original size:47 final size:47
Alignment explanation
Indices: 66432540--66432778 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
66432530 CCTAGCCTCT
*
66432540 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
66432587 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
66432634 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
66432681 TTTTGATAACTGGGGCATAAG-CCTTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
66432728 TTTTTGATAACTAGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
66432776 TTT
1 TTT
66432779 TGCACTTCCT
Statistics
Matches: 184, Mismatches: 5, Indels: 7
0.94 0.03 0.04
Matches are distributed among these distances:
46 3 0.02
47 117 0.64
48 62 0.34
49 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:66432619 original size:71 final size:72
Alignment explanation
Indices: 66432519--66432779 Score: 406
Period size: 71 Copynumber: 3.7 Consensus size: 72
66432509 GCTGTATCAT
* *
66432519 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
*
66432583 GCCC-TTTA
64 GCCCTTTTG
*
66432591 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
66432655 CCTTTTG
66 CCTTTTG
*
66432662 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG-CCTTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
66432726 CCTTTTTG
66 CC-TTTTG
*
66432734 ATAACTAGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
66432780 GCACTTCCTC
Statistics
Matches: 178, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
70 25 0.14
71 112 0.63
72 41 0.23
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTTG
Found at i:66432851 original size:9 final size:9
Alignment explanation
Indices: 66432837--66432893 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
66432827 ATCTCGTGTG
66432837 CATATCATA
1 CATATCATA
*
66432846 CATATCATGTG
1 CATATCA--TA
66432857 CATATCATA
1 CATATCATA
* *
66432866 CATGTCATGTG
1 CATATCA--TA
66432877 CATATCATA
1 CATATCATA
66432886 CATATCAT
1 CATATCAT
66432894 GTCTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:66432856 original size:20 final size:20
Alignment explanation
Indices: 66432833--66432895 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
66432823 GAACATCTCG
66432833 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
66432853 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
66432873 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
66432893 TGT
1 TGT
66432896 CTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:66434237 original size:27 final size:26
Alignment explanation
Indices: 66434137--66434230 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 26
66434127 GGGCATATTC
*
66434137 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
66434164 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
66434191 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
66434218 GTCACTTTACCTA
1 GTCACTTTACCTA
66434231 ATAGGGGTAT
Statistics
Matches: 63, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
26 4 0.06
27 56 0.89
28 3 0.05
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:66434312 original size:27 final size:27
Alignment explanation
Indices: 66434286--66434772 Score: 129
Period size: 27 Copynumber: 18.0 Consensus size: 27
66434276 ATCTACAAAC
*
66434286 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
66434313 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* *
66434342 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** *
66434369 CAGGGGTATTTTGGTAATTTT-AAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** * ***
66434395 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* **
66434421 CTAAGGGTATTT-TGATAATTTTACAAA-
1 C-AAGGGTATTTCAG-TAATTTTGTAAAT
* *
66434448 CTAGGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
* *** *
66434476 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** * *
66434503 CAAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
* *** * *
66434530 CGAGGGTAAAACTGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** * * *
66434557 CGAGGGTAAAACGGTAATTCTGTAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** *
66434584 CGAGGGTAAAAC-GATAATTGTGTAAAT
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
* *** * *
66434611 CAGGGGTAAAACGGTAATTATGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** *
66434638 CAGGGGTAAAAC-GATAATTCTGTAAAT
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
** * ** *
66434665 CGGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCAGTAATTTTGTAAAT
**
66434692 CGAA-GGTATTTCAGTAATTTTACAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
* *
66434719 CGAGGGTATTTCAGT-ATTTT-TACAAA
1 CAAGGGTATTTCAGTAATTTTGTA-AAT
66434745 CTAAGGGTATTTC-GATAATTTTAGTAAA
1 C-AAGGGTATTTCAG-TAATTTT-GTAAA
66434773 CTAAAGTATT
Statistics
Matches: 371, Mismatches: 62, Indels: 52
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.00
26 40 0.11
27 289 0.78
28 19 0.05
29 19 0.05
30 3 0.01
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:66434664 original size:54 final size:54
Alignment explanation
Indices: 66434462--66434672 Score: 277
Period size: 54 Copynumber: 3.9 Consensus size: 54
66434452 GGGTATTTTA
* * **
66434462 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCAGGGGTAAAACG
*
66434516 GTAATTCTATAAATCGAGGGTAAAACTG-TAATTCTGTAAATC-GAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAG-GGGTAAAACG
* *
66434570 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTGTGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAGGGGTAAAACG
* *
66434624 GTAATTATGTAAATC-AGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGA-GGGTAAAACGATAATTCTGTAAATCAGGGGTA
66434673 CTTTGGTAAT
Statistics
Matches: 139, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
53 2 0.01
54 136 0.98
55 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAGGGGTAAAACG
Found at i:66434672 original size:81 final size:81
Alignment explanation
Indices: 66434462--66434672 Score: 268
Period size: 81 Copynumber: 2.6 Consensus size: 81
66434452 GGGTATTTTA
* * *
66434462 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
1 GTAATTATGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAAGAGTAATTCTAT
*
66434526 AAATCGAGGGTAAAACT
65 AAATCGAGGGTAAAACG
* * * * *
66434543 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGA-TAATTGTGT
1 GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA-GAGTAATTCTAT
66434607 AAATC-AGGGGTAAAACG
65 AAATCGA-GGGTAAAACG
*
66434624 GTAATTATGTAAATC-AGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATCGA-GGGTAAAACGATAATTCTGTAAATCGAGGGTA
66434673 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
80 2 0.02
81 111 0.97
82 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAGAGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:66437607 original size:24 final size:24
Alignment explanation
Indices: 66437556--66437816 Score: 397
Period size: 24 Copynumber: 11.0 Consensus size: 24
66437546 ACTTTATCAT
*
66437556 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
66437581 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66437605 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
66437628 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
66437652 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
66437675 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
66437699 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
66437723 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
66437746 ATAACTGGGGCATAAGCCCTTTTTG
1 ATAACTGGGGCATAAGCCC-TTTTA
66437771 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66437794 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66437817 GCACTTCCTC
Statistics
Matches: 219, Mismatches: 11, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
23 88 0.40
24 97 0.44
25 34 0.16
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:66437631 original size:47 final size:47
Alignment explanation
Indices: 66437577--66437815 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
66437567 CCTAGCCTCT
*
66437577 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
66437624 TTTAATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
66437671 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
66437718 TTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
66437765 TTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
66437813 TTT
1 TTT
66437816 TGCACTTCCT
Statistics
Matches: 184, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
46 3 0.02
47 112 0.61
48 69 0.38
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:66437656 original size:71 final size:71
Alignment explanation
Indices: 66437556--66437815 Score: 409
Period size: 71 Copynumber: 3.6 Consensus size: 71
66437546 ACTTTATCAT
* *
66437556 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAA
*
66437620 GCCC-TTTA
63 GCCCTTTTG
* *
66437628 ATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
66437693 CTTTTG
66 CTTTTG
*
66437699 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
66437764 CTTTTTG
66 C-TTTTG
66437771 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
66437816 TGCACTTCCT
Statistics
Matches: 178, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
70 23 0.13
71 120 0.67
72 35 0.20
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
CTTTTG
Found at i:66437888 original size:9 final size:9
Alignment explanation
Indices: 66437874--66437930 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
66437864 ATCTCGTGTG
66437874 CATATCATA
1 CATATCATA
*
66437883 CATATCATGTG
1 CATATCA--TA
66437894 CATATCATA
1 CATATCATA
* *
66437903 CATGTCATGTG
1 CATATCA--TA
66437914 CATATCATA
1 CATATCATA
66437923 CATATCAT
1 CATATCAT
66437931 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:66437893 original size:20 final size:20
Alignment explanation
Indices: 66437870--66437932 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
66437860 GAACATCTCG
66437870 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
66437890 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
66437910 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
66437930 TGT
1 TGT
66437933 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:66438008 original size:25 final size:24
Alignment explanation
Indices: 66437969--66438016 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
66437959 ATATATAAAC
* *
66437969 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAATGGTCA-TTTTA
66437994 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
66438017 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:66439275 original size:27 final size:26
Alignment explanation
Indices: 66439175--66439268 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 26
66439165 GGGCATATTC
*
66439175 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
66439202 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
66439229 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
66439256 GTCACTTTACCTA
1 GTCACTTTACCTA
66439269 ATAGGGGTAT
Statistics
Matches: 63, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
26 4 0.06
27 56 0.89
28 3 0.05
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:66439350 original size:27 final size:27
Alignment explanation
Indices: 66439324--66439811 Score: 136
Period size: 27 Copynumber: 18.0 Consensus size: 27
66439314 ATCTACAAAC
*
66439324 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
66439351 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* *
66439380 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** **
66439407 CAGGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** * ***
66439434 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* **
66439460 CTAAGGGTATTT-TGATAATTTTACAAA-
1 C-AAGGGTATTTCAG-TAATTTTGTAAAT
* *
66439487 CTAGGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
* *** *
66439515 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** * *
66439542 CAAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
* *** * *
66439569 CGAGGGTAAAACTGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** * * *
66439596 CGAGGGTAAAACGGTAATTCTGTAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** *
66439623 CGAGGGTAAAAC-GATAATTGTGTAAAT
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
* *** * *
66439650 CAGGGGTAAAACGGTAATTATGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** *
66439677 CAGGGGTAAAAC-GATAATTCTGTAAAT
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
** * ** *
66439704 CGGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCAGTAATTTTGTAAAT
**
66439731 CGAA-GGTATTTCAGTAATTTTACAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
* *
66439758 CGAGGGTATTTCAGT-ATTTT-TACAAA
1 CAAGGGTATTTCAGTAATTTTGTA-AAT
*
66439784 CTAAGGGTATTTCGGTAATTTTAGTAAA
1 C-AAGGGTATTTCAGTAATTTT-GTAAA
66439812 CTAAAGTATT
Statistics
Matches: 372, Mismatches: 64, Indels: 48
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.00
26 19 0.05
27 311 0.84
28 19 0.05
29 19 0.05
30 3 0.01
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:66439521 original size:54 final size:54
Alignment explanation
Indices: 66439297--66439522 Score: 195
Period size: 54 Copynumber: 4.1 Consensus size: 54
66439287 TTTCATCCTA
* * * * * *
66439297 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGATAATTTTACAAACTAAGGGTATTTCAGTAATTTTGTAAAT
* * * * *
66439351 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGATAA-TTTTACAAACT-AAGGGTATTTCAGTAATTTTGTAAAT
* * * * * * ***
66439407 CAGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGATAATTTTACAAACTAAGGGTATTTCAGTAATTTTGTAAAT
* *
66439460 CTAAGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTGATAATTTTACAAACTAAGGGTATTTCAGTAATTTTGTAAAT
*
66439515 CGAGGGTA
1 CAAGGGTA
66439523 AAACAGTAAT
Statistics
Matches: 132, Mismatches: 34, Indels: 12
0.74 0.19 0.07
Matches are distributed among these distances:
53 1 0.01
54 78 0.59
55 18 0.14
56 35 0.27
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTGATAATTTTACAAACTAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:66439703 original size:54 final size:54
Alignment explanation
Indices: 66439501--66439711 Score: 277
Period size: 54 Copynumber: 3.9 Consensus size: 54
66439491 GGGTATTTTA
* * **
66439501 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCAGGGGTAAAACG
*
66439555 GTAATTCTATAAATCGAGGGTAAAACTG-TAATTCTGTAAATC-GAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAG-GGGTAAAACG
* *
66439609 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTGTGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAGGGGTAAAACG
* *
66439663 GTAATTATGTAAATC-AGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGA-GGGTAAAACGATAATTCTGTAAATCAGGGGTA
66439712 CTTTGGTAAT
Statistics
Matches: 139, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
53 2 0.01
54 136 0.98
55 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAGGGGTAAAACG
Found at i:66439711 original size:81 final size:81
Alignment explanation
Indices: 66439501--66439711 Score: 268
Period size: 81 Copynumber: 2.6 Consensus size: 81
66439491 GGGTATTTTA
* * *
66439501 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
1 GTAATTATGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAAGAGTAATTCTAT
*
66439565 AAATCGAGGGTAAAACT
65 AAATCGAGGGTAAAACG
* * * * *
66439582 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGA-TAATTGTGT
1 GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA-GAGTAATTCTAT
66439646 AAATC-AGGGGTAAAACG
65 AAATCGA-GGGTAAAACG
*
66439663 GTAATTATGTAAATC-AGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATCGA-GGGTAAAACGATAATTCTGTAAATCGAGGGTA
66439712 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
80 2 0.02
81 111 0.97
82 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAGAGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:66442008 original size:29 final size:29
Alignment explanation
Indices: 66441966--66442036 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
66441956 GACGAGATTA
*
66441966 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTAGAAATATATG
66441995 GCACTAAGTGTGCATGCTAGAAATATATG
1 GCACTAAGTGTGCATGCTAGAAATATATG
66442024 GCACTAAGTGTGC
1 GCACTAAGTGTGC
66442037 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTAGAAATATATG
Found at i:66442052 original size:29 final size:29
Alignment explanation
Indices: 66441966--66442096 Score: 106
Period size: 29 Copynumber: 4.5 Consensus size: 29
66441956 GACGAGATTA
* **
66441966 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTAGAAACGTATG
**
66441995 GCACTAAGTGTGC-ATGCTAGAAATATATG
1 GCACTAAGTGTGCGA-GCTAGAAACGTATG
* **
66442024 GCACTAAGTGTGCGAGCTCGAAGGGTATG
1 GCACTAAGTGTGCGAGCTAGAAACGTATG
* * * *
66442053 GCACTATGTGTGCGGGCTTA-AATCGCATG
1 GCACTAAGTGTGCGAGC-TAGAAACGTATG
66442082 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
66442097 AATCGAGTAT
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
29 85 0.98
30 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTAGAAACGTATG
Found at i:66451019 original size:40 final size:40
Alignment explanation
Indices: 66450960--66451140 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
66450950 CATTTGAATG
*
66450960 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
66451000 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
66451040 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
66451080 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
66451120 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
66451141 AAACTTGGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 116 0.90
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:66462823 original size:25 final size:26
Alignment explanation
Indices: 66462774--66462823 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
66462764 GAGGTAACTT
*
66462774 TGTATGTTAAATAAGCTTTACTTTAAA
1 TGTATGTTAAAT-AGCTTTAATTTAAA
*
66462801 TGTATTTTAAAT-GCTTTAATTTA
1 TGTATGTTAAATAGCTTTAATTTA
66462824 TGCATAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (26 bp):
TGTATGTTAAATAGCTTTAATTTAAA
Found at i:66469796 original size:17 final size:17
Alignment explanation
Indices: 66469774--66469807 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
66469764 ATGTAAATAC
*
66469774 ATATATGAACAAATAAT
1 ATATATAAACAAATAAT
*
66469791 ATATATAAACCAATAAT
1 ATATATAAACAAATAAT
66469808 CATGGATGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.09, G:0.03, T:0.29
Consensus pattern (17 bp):
ATATATAAACAAATAAT
Found at i:66470175 original size:25 final size:25
Alignment explanation
Indices: 66470098--66470176 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
66470088 TGGGATGAAG
* * *
66470098 ATTGGTATGCACTCACAAGCTATAA
1 ATTGATATGCTCTCACGAGCTATAA
* *
66470123 A-TCAGTATGCTCTCATGAGCTATAA
1 ATTGA-TATGCTCTCACGAGCTATAA
66470148 ATTGATATGCTCTCACGAGCTATAA
1 ATTGATATGCTCTCACGAGCTATAA
66470173 ATTG
1 ATTG
66470177 GTAACCTTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
24 1 0.02
25 42 0.93
26 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (25 bp):
ATTGATATGCTCTCACGAGCTATAA
Found at i:66475717 original size:40 final size:39
Alignment explanation
Indices: 66475619--66475759 Score: 133
Period size: 40 Copynumber: 3.5 Consensus size: 39
66475609 TGAATGATAC
* * * * * *
66475619 CCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT-GAGACTACAT
* *
66475659 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGAGGCTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT-GAGACTACAT
* *
66475699 CCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGAC-TAC-AT
66475739 CCGGGCTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
66475760 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
38 4 0.05
39 5 0.06
40 76 0.89
ACGTcount: A:0.28, C:0.26, G:0.28, T:0.19
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTGAGACTACAT
Found at i:66475780 original size:40 final size:40
Alignment explanation
Indices: 66475653--66475780 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
66475643 ATGCTGGAAA
* * *
66475653 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGAGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
66475693 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
66475733 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
66475773 TTATATCC
1 TTATATCC
66475781 AGTTGTATTC
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 69 0.95
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:66481745 original size:48 final size:49
Alignment explanation
Indices: 66481674--66481860 Score: 209
Period size: 48 Copynumber: 3.9 Consensus size: 49
66481664 CGTCTACGCT
* * *
66481674 GATGCCATGTCCCAGACATGGTCTTACAGTAGCGCACATATCAAT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAATCGCC
* * * * *
66481722 GATGCCATGTCCCAGAGATGGTCTTACACTGGCTCTCACAAC-ATCACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAATCGCC
* * * * * *
66481770 AATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAT-GATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAATCGCC
* *
66481818 GATGCCATGTCCCAGACGTGGTCTTACACTGGCACACATATCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCA
66481861 CCCAAATGTC
Statistics
Matches: 113, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
47 2 0.02
48 111 0.98
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.25
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAATCGCC
Found at i:66481840 original size:96 final size:96
Alignment explanation
Indices: 66481675--66481850 Score: 257
Period size: 96 Copynumber: 1.8 Consensus size: 96
66481665 GTCTACGCTG
* *
66481675 ATGCCATGTCCCAGACATGGTCTTACAGTAGCGCACATATCAATGCCGATGCCATGTCCCAGAGA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGAGA
66481740 TGGTCTTACACTGGCTCTCACAACATCACCA
66 TGGTCTTACACTGGCTCTCACAACATCACCA
* * * * *
66481771 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAT-GATGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAAT-GCCGATGCCATGTCCCAGA-
66481835 G-TGGTCTTACACTGGC
64 GATGGTCTTACACTGGC
66481851 ACACATATCA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
95 2 0.03
96 68 0.96
97 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGAGA
TGGTCTTACACTGGCTCTCACAACATCACCA
Found at i:66492233 original size:55 final size:55
Alignment explanation
Indices: 66492106--66492233 Score: 150
Period size: 55 Copynumber: 2.3 Consensus size: 55
66492096 TGCGACATAG
** * *
66492106 CCGTGGTCGAACCTGCCAAAACAACATAAGGGTGAGACACGCCCGTGTGGAACAA
1 CCGTGGTCGAACCTGTTAAAACAACATAAGCGTGAGACACGCCCGTGTCGAACAA
* * * * *
66492161 CCGTGGGT-GAACCTGTTAAAACAGCATGAGCGTGAGACACGCCCGTGTCTAGCAC
1 CCGT-GGTCGAACCTGTTAAAACAACATAAGCGTGAGACACGCCCGTGTCGAACAA
*
66492216 CCGTGGTCGAACTTGTTA
1 CCGTGGTCGAACCTGTTA
66492234 GATTGACACG
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
54 3 0.05
55 55 0.90
56 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.18
Consensus pattern (55 bp):
CCGTGGTCGAACCTGTTAAAACAACATAAGCGTGAGACACGCCCGTGTCGAACAA
Found at i:66496555 original size:14 final size:13
Alignment explanation
Indices: 66496535--66496571 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
66496525 AATATTTAAC
66496535 TTGTTCTTAATTA
1 TTGTTCTTAATTA
66496548 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
66496562 TTGTT-TTAAT
1 TTGTTCTTAAT
66496572 ATCCCAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:66504986 original size:96 final size:96
Alignment explanation
Indices: 66504820--66505079 Score: 312
Period size: 96 Copynumber: 2.7 Consensus size: 96
66504810 TTGGAATACT
* * * * * * * *
66504820 AAACATGGTCTTACACTGGGC-CACATGTCGAGGCCAATGCCATGTCCCAAACATGGTCTCACAC
1 AAACATGGTCTTACACT-AGCTCTCATATCGTGGTCGATGCCATGTCCCAGACATGGTCTTACAC
* * *
66504884 TAGCTCTCATCTCA-AT-GCCGATGCCATGTCCC
65 TGGCTCTCA-C-AATATCACCGATGCCATGTCCC
* * * *
66504916 AGACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGATGTCATGTCCTAGACATGGTCTTACAC
1 AAACATGGTCTTACACTAGCTCTCAT-ATCGTGGTCGATGCCATGTCCCAGACATGGTCTTACAC
*
66504980 TGGCTCTCACAATATCACCGATGCCATGTTCC
65 TGGCTCTCACAATATCACCGATGCCATGTCCC
66505012 AAACATGGTCTTACACTAGCTCTCATATCGTGGTCGATGCCATGTCCCAGACATGGTCTTACACT
1 AAACATGGTCTTACACTAGCTCTCATATCGTGGTCGATGCCATGTCCCAGACATGGTCTTACACT
66505077 GGC
66 GGC
66505080 ATACATATCA
Statistics
Matches: 141, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
94 1 0.01
95 8 0.06
96 131 0.93
97 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (96 bp):
AAACATGGTCTTACACTAGCTCTCATATCGTGGTCGATGCCATGTCCCAGACATGGTCTTACACT
GGCTCTCACAATATCACCGATGCCATGTCCC
Found at i:66505087 original size:48 final size:48
Alignment explanation
Indices: 66504822--66505088 Score: 251
Period size: 48 Copynumber: 5.6 Consensus size: 48
66504812 GGAATACTAA
* * * *
66504822 ACATGGTCTTACACTGGGC-CACATGTCGAGGCCAATGCCATGTCCCAA
1 ACATGGTCTTACACT-GGCTCACATATCGTGGCCGATGCCATGTCCCAG
* * * * *
66504870 ACATGGTCTCACACTAGCTCTCATCTCAAT-GCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCACATATC-GTGGCCGATGCCATGTCCCAG
* * * *
66504918 ACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGATGTCATGTCCTAG
1 ACATGGTCTTACACTGGCTCACAT-ATCGTGGCCGATGCCATGTCCCAG
* * *
66504966 ACATGGTCTTACACTGGCTCTCACAATATC---ACCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGG--CTCAC-ATATCGTGGCCGATGCCATGTCCCAG
* * *
66505014 ACATGGTCTTACACTAGCTCTCATATCGTGGTCGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCACATATCGTGGCCGATGCCATGTCCCAG
66505062 ACATGGTCTTACACTGGCAT-ACATATC
1 ACATGGTCTTACACTGGC-TCACATATC
66505089 ACCCAAATTT
Statistics
Matches: 177, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
45 5 0.03
46 4 0.02
47 3 0.02
48 155 0.88
49 2 0.01
50 6 0.03
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
ACATGGTCTTACACTGGCTCACATATCGTGGCCGATGCCATGTCCCAG
Found at i:66508748 original size:23 final size:23
Alignment explanation
Indices: 66508715--66508763 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
66508705 TGAATACATG
*
66508715 TCACCATGTCAGGACGAGGCATA
1 TCACCACGTCAGGACGAGGCATA
* *
66508738 TCACCACGTCAGGATGAGGTATA
1 TCACCACGTCAGGACGAGGCATA
66508761 TCA
1 TCA
66508764 TCTCATCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.20
Consensus pattern (23 bp):
TCACCACGTCAGGACGAGGCATA
Found at i:66511230 original size:30 final size:31
Alignment explanation
Indices: 66511196--66511258 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
66511186 CCGCCAAACC
66511196 TTGGTT-ATTTTTTATTTTTACCACCAAAAT
1 TTGGTTAATTTTTTATTTTTACCACCAAAAT
*
66511226 TTGGTTAATTTTTTATTTTTACCACCGAAAT
1 TTGGTTAATTTTTTATTTTTACCACCAAAAT
66511257 TT
1 TT
66511259 TGAAACTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 6 0.19
31 25 0.81
ACGTcount: A:0.25, C:0.13, G:0.08, T:0.54
Consensus pattern (31 bp):
TTGGTTAATTTTTTATTTTTACCACCAAAAT
Found at i:66514036 original size:28 final size:28
Alignment explanation
Indices: 66513975--66514072 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
66513965 TCACAAATTG
** * *
66513975 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
66514004 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
66514032 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
66514060 GCACTAAGTGTGC
1 GCACTAAGTGTGC
66514073 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:66521709 original size:28 final size:28
Alignment explanation
Indices: 66521648--66521745 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
66521638 TCACAAATTG
** * *
66521648 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
66521677 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
66521705 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
66521733 GCACTAAGTGTGC
1 GCACTAAGTGTGC
66521746 GGGCTTATGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:66523760 original size:3 final size:3
Alignment explanation
Indices: 66523754--66523795 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
66523744 TATGACTTTT
*
66523754 TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
66523796 AGATTAAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:66524747 original size:24 final size:25
Alignment explanation
Indices: 66524720--66524779 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
66524710 TTTGGAAATC
*
66524720 ACATTCATAATATGT-ATTTATGAA
1 ACATTCATAATATATAATTTATGAA
*
66524744 ACATTCATAAAATATAATTTATGAA
1 ACATTCATAATATATAATTTATGAA
66524769 ACATTCATAAT
1 ACATTCATAAT
66524780 GCTTAACTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 13 0.41
25 19 0.59
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (25 bp):
ACATTCATAATATATAATTTATGAA
Found at i:66536595 original size:73 final size:73
Alignment explanation
Indices: 66536476--66536618 Score: 277
Period size: 73 Copynumber: 2.0 Consensus size: 73
66536466 CGACACACCT
66536476 TAGTTAAATATACTAGGGTTGTCACCCCTAATATATATAGTGAGGGGTTTTGAGTCTCGCCTATA
1 TAGTTAAATATACTAGGGTTGTCACCCCTAATATATATAGTGAGGGGTTTTGAGTCTCGCCTATA
66536541 TTAGACCC
66 TTAGACCC
*
66536549 TAGTTAAATATACTAGGGTTGTCACCCCTAATATATGTAGTGAGGGGTTTTGAGTCTCGCCTATA
1 TAGTTAAATATACTAGGGTTGTCACCCCTAATATATATAGTGAGGGGTTTTGAGTCTCGCCTATA
66536614 TTAGA
66 TTAGA
66536619 TCCAATTATA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (73 bp):
TAGTTAAATATACTAGGGTTGTCACCCCTAATATATATAGTGAGGGGTTTTGAGTCTCGCCTATA
TTAGACCC
Found at i:66542208 original size:9 final size:8
Alignment explanation
Indices: 66542189--66542228 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
66542179 TGAGTATAAA
66542189 AAAATTAT
1 AAAATTAT
66542197 AAAATTACT
1 AAAATTA-T
66542206 AAAATTA-
1 AAAATTAT
*
66542213 AAAAATAT
1 AAAATTAT
66542221 AAAATTAT
1 AAAATTAT
66542229 TGACATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.21
8 14 0.50
9 8 0.29
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATTAT
Found at i:66545982 original size:12 final size:12
Alignment explanation
Indices: 66545965--66545989 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66545955 ACACTATTGG
66545965 AGCCAACTCTGA
1 AGCCAACTCTGA
66545977 AGCCAACTCTGA
1 AGCCAACTCTGA
66545989 A
1 A
66545990 ACATATTTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.32, G:0.16, T:0.16
Consensus pattern (12 bp):
AGCCAACTCTGA
Found at i:66551590 original size:48 final size:48
Alignment explanation
Indices: 66551518--66551665 Score: 264
Period size: 48 Copynumber: 3.1 Consensus size: 48
66551508 AGATAAATAT
66551518 ATATGTATA--TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
66551564 ATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
66551612 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
66551660 ATATGT
1 ATATGT
66551666 GTATATTGTG
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
46 9 0.09
48 88 0.91
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:66551852 original size:37 final size:37
Alignment explanation
Indices: 66551802--66551904 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
66551792 GGAAATATAT
66551802 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
66551839 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
66551876 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
66551905 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:66555835 original size:30 final size:29
Alignment explanation
Indices: 66555797--66555854 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
66555787 AAATCAAATT
*
66555797 TCAAGTCTAGGGGTAAAATGGTCATTTTG
1 TCAAGTCTAGGGGCAAAATGGTCATTTTG
66555826 TCAAGGTCTAGGGGCAAAATGGTCATTTT
1 TCAA-GTCTAGGGGCAAAATGGTCATTTT
66555855 ACCAAAGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (29 bp):
TCAAGTCTAGGGGCAAAATGGTCATTTTG
Found at i:66556310 original size:47 final size:46
Alignment explanation
Indices: 66556198--66556374 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
66556188 GGGTTATTGT
* * * **
66556198 GAGCTAGTGTAAGACATGTCTGGGACGTGCATCGGCCA-C-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGA-GACAA
*
66556244 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACAA
* * * * *
66556292 GTGCTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACA-A
66556339 -AGCCAGTGTAAGACTATGTCTGGGACATGGCATCGG
1 GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGG
66556375 TGCCTTACCC
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 40 0.37
47 39 0.36
48 28 0.26
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACAA
Found at i:66556333 original size:46 final size:47
Alignment explanation
Indices: 66556203--66556374 Score: 167
Period size: 47 Copynumber: 3.7 Consensus size: 47
66556193 ATTGTGAGCT
* **
66556203 AGTGTAAGACATGTCTGGGACGT-GCATCGGCCA-C-A-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG-CATCGAGACAT-A-AGCC
* * *
66556249 AATGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACA-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGACATA-AGCC
* * *
66556297 AGTGTAAGACATGTTTAGGACAT-GCATCGGCCTCGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGACATAAGCC
66556343 AGTGTAAGACTATGTCTGGGACATGGCATCGG
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGG
66556375 TGCCTTACCC
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
46 36 0.35
47 39 0.38
48 27 0.26
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGACATAAGCC
Found at i:66556361 original size:94 final size:94
Alignment explanation
Indices: 66556200--66556374 Score: 246
Period size: 94 Copynumber: 1.9 Consensus size: 94
66556190 GTTATTGTGA
* * **
66556200 GCTAGTGTAAGACATGTCTGGGACGTGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACAACATGAGAGCCAATGTAAGACCATGTC
66556265 TGGGACATGGCATCGGCATCGAGACAAGT
66 TGGGACATGGCATCGGCATCGAGACAAGT
* * * *
66556294 GCTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACAT-A-AGCCAGTGTAAGACTATG
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-A-ACATGAGAGCCAATGTAAGACCATG
66556357 TCTGGGACATGGCATCGG
64 TCTGGGACATGGCATCGG
66556375 TGCCTTACCC
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
94 67 0.94
95 2 0.03
96 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACAACATGAGAGCCAATGTAAGACCATGTC
TGGGACATGGCATCGGCATCGAGACAAGT
Found at i:66561951 original size:67 final size:67
Alignment explanation
Indices: 66561839--66561971 Score: 185
Period size: 67 Copynumber: 2.0 Consensus size: 67
66561829 AGCATATGTT
** *
66561839 ACAGGGCATTTAGCCTGGACTGGTAATCCTGTTGTAAGAAATGAGGTTCGCGGGAGTGTGCTCTC
1 ACAGGGCATTTAGCCTGGACTGGTAATCCTACTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTC
66561904 TC
66 TC
* * * * * *
66561906 ACAGGGGATTTAGCTTGGACTGGTAATCTTACTGTGAGAATTGAGGTTCATGGGAGTGTGCTCTC
1 ACAGGGCATTTAGCCTGGACTGGTAATCCTACTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTC
66561971 T
66 T
66561972 GAAATGGAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.31
Consensus pattern (67 bp):
ACAGGGCATTTAGCCTGGACTGGTAATCCTACTGTAAGAAATGAGGTTCACGGGAGTGTGCTCTC
TC
Found at i:66563678 original size:28 final size:28
Alignment explanation
Indices: 66563615--66563714 Score: 130
Period size: 27 Copynumber: 3.5 Consensus size: 28
66563605 ATAGTGAGTC
*
66563615 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATACAATCAAACT
66563642 CGCACACTTAGTGCTATACAATCAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
* * *
66563670 CGCACACTTAGTGCTGTACAAATTTTAAACC
1 CGCACACTTAGTGCTATAC-AA--TCAAACT
66563701 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66563715 CAATTTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 2 0.03
31 19 0.29
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:66565946 original size:41 final size:41
Alignment explanation
Indices: 66565901--66566018 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
66565891 TGAAAGATAA
66565901 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
66565942 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66565972 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66566013 ATGTAG
1 ATGTAG
66566019 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:66565957 original size:71 final size:71
Alignment explanation
Indices: 66565869--66566032 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66565859 GAGATGTATC
66565869 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66565934 AGGACA
66 AGGACA
66565940 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66566005 AGGACA
66 AGGACA
66566011 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
66566033 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:66569850 original size:39 final size:39
Alignment explanation
Indices: 66569796--66569939 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
66569786 GAATGTTCGA
66569796 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
66569835 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
66569874 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
66569913 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
66569940 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:66569886 original size:78 final size:79
Alignment explanation
Indices: 66569797--66569979 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
66569787 AATGTTCGAG
66569797 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
66569861 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
66569875 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
66569940 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
66569954 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
66569980 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:66577298 original size:39 final size:39
Alignment explanation
Indices: 66577244--66577387 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
66577234 GAATGTTCGA
66577244 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
66577283 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
66577322 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
66577361 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
66577388 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:66577334 original size:78 final size:79
Alignment explanation
Indices: 66577245--66577426 Score: 276
Period size: 78 Copynumber: 2.3 Consensus size: 79
66577235 AATGTTCGAG
66577245 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
66577309 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
66577323 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
66577388 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * **
66577402 CCATAACCGGGCTATTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
66577427 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 54 0.57
79 40 0.43
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:66585182 original size:53 final size:53
Alignment explanation
Indices: 66585120--66585224 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
66585110 TTTCTTTTTA
* * * * *
66585120 AACTTACCATTGCCATGTCTTGACAAGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACAAGGTCTTACATGGGATCCTTACCTTATG
* * *
66585173 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTACCTTAT
1 AACTCACCATTGCCATGCCTTGACAAGGTCTTACATGGGATCCTTACCTTAT
66585225 CGTAGTTTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACAAGGTCTTACATGGGATCCTTACCTTATG
Found at i:66595205 original size:20 final size:20
Alignment explanation
Indices: 66595165--66595206 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
66595155 CACCAAATAT
**
66595165 AAATATTAAAAAAATGTTAA
1 AAATATTAAAAAAATCATAA
*
66595185 AAATTTTAAAAAAATCATAA
1 AAATATTAAAAAAATCATAA
66595205 AA
1 AA
66595207 TAATATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (20 bp):
AAATATTAAAAAAATCATAA
Found at i:66595788 original size:30 final size:29
Alignment explanation
Indices: 66595722--66595790 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
66595712 TACGAAATTG
* *
66595722 AACATTTTTAATATAGTGTTTGTGCATTA
1 AACATTTTTAATATAATATTTGTGCATTA
* *
66595751 AATATTTTTAATATAATATTTAGTGTATTA
1 AACATTTTTAATATAATATTT-GTGCATTA
*
66595781 AGCATTTTTA
1 AACATTTTTA
66595791 TTTTGTTAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 18 0.55
30 15 0.45
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (29 bp):
AACATTTTTAATATAATATTTGTGCATTA
Found at i:66597149 original size:89 final size:89
Alignment explanation
Indices: 66596990--66597159 Score: 229
Period size: 89 Copynumber: 1.9 Consensus size: 89
66596980 AATAATATTG
* **
66596990 AAAAGTTTAATAATTAAAAATATTAAATTAAATAATTTAATTTAAAAGGATATTTTTAACAATCA
1 AAAAGTCTAATAATTAAAAATATTAAATTAAATAAAATAATTTAAAAGGATATTTTTAACAATCA
66597055 CTTTTAGTAATTTTAGATCAAGATT
66 CTTTTA-TAATTTTAGATCAAGATT
* * *
66597080 AAAAGTCTAATAATT-GAAATATTAAATTAAA-AAAATAATTTAAAAAGGATA-TTTTGATAATC
1 AAAAGTCTAATAATTAAAAATATTAAATTAAATAAAATAATTT-AAAAGGATATTTTTAACAATC
*
66597142 ACTTTTTATAGTTTTAGA
65 AC-TTTTATAATTTTAGA
66597160 GTTGAGTCTC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
88 28 0.39
89 29 0.41
90 14 0.20
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (89 bp):
AAAAGTCTAATAATTAAAAATATTAAATTAAATAAAATAATTTAAAAGGATATTTTTAACAATCA
CTTTTATAATTTTAGATCAAGATT
Found at i:66598928 original size:111 final size:111
Alignment explanation
Indices: 66598800--66599014 Score: 295
Period size: 111 Copynumber: 1.9 Consensus size: 111
66598790 TTATTTAAGT
* * ** **
66598800 TCTGGGAAGCATTATTCTCATTCTGACCTGCATTCTCGTTGTCGGTAATGCTCTCAGCAGCATTT
1 TCTGAGAAGCATCATTCTCATTCTGACCTGCATTCTCGTTGTCACTAATGCTCTCAGCAGCATCG
* * *
66598865 TTCTCATTTCGGTCTGCACTCTCATTGTTGTTGTTGTTCTTTAATC
66 TTCTCATTTCGGCCTGCACTCTCATTGTTATTGATGTTCTTTAATC
* * * *
66598911 TCTGAGAAGCATCATTCTCATTCTGACTTGCATTTTTGTTGTCACTAATGCTCTGAGCAGCATCG
1 TCTGAGAAGCATCATTCTCATTCTGACCTGCATTCTCGTTGTCACTAATGCTCTCAGCAGCATCG
* *
66598976 TTCTCATTTTGGCCTGCATTCTCATTGTTATTGATGTTC
66 TTCTCATTTCGGCCTGCACTCTCATTGTTATTGATGTTC
66599015 AAGTTCTGGA
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
111 89 1.00
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.43
Consensus pattern (111 bp):
TCTGAGAAGCATCATTCTCATTCTGACCTGCATTCTCGTTGTCACTAATGCTCTCAGCAGCATCG
TTCTCATTTCGGCCTGCACTCTCATTGTTATTGATGTTCTTTAATC
Found at i:66605298 original size:40 final size:40
Alignment explanation
Indices: 66605204--66605429 Score: 330
Period size: 40 Copynumber: 5.7 Consensus size: 40
66605194 CAATTGAGGA
* * *
66605204 TTATATCCAGGTTAAGTCCCAAAGGCATTCGTGCTGGTT-
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
66605243 TTATTTCCGGGTTAAGTTCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
66605283 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
66605323 TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTT-
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
66605362 TCTATTTCCGGGTTAAGTCCCGAAGGTATTTGTGCTGGTTG
1 T-TATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
66605403 TTACATCCGGGCTAAATCCCGAAGGCA
1 TTATTTCCGGGTTAAGTCCCGAAGGCA
66605430 ATTGGGTTGG
Statistics
Matches: 170, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 36 0.21
40 133 0.78
41 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.35
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:66609510 original size:11 final size:11
Alignment explanation
Indices: 66609490--66609519 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
66609480 TTTTTATGTT
66609490 TATCATTATTG
1 TATCATTATTG
*
66609501 TATTATTATTG
1 TATCATTATTG
66609512 TATCATTA
1 TATCATTA
66609520 ACTTTATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (11 bp):
TATCATTATTG
Found at i:66609778 original size:3 final size:3
Alignment explanation
Indices: 66609770--66609829 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
66609760 TAATTTACCT
66609770 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
66609817 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
66609830 ATTTGATTTC
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 54 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:66615534 original size:17 final size:16
Alignment explanation
Indices: 66615514--66615551 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
66615504 AAAGTTTTCC
* *
66615514 AAAAAAAAAGGAAGAG
1 AAAAAAAAAAGAAAAG
66615530 AAAAAAAAAAGAAAAG
1 AAAAAAAAAAGAAAAG
66615546 AAAAAA
1 AAAAAA
66615552 GAGAGGCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAAAAG
Found at i:66615953 original size:53 final size:53
Alignment explanation
Indices: 66615873--66615975 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 53
66615863 ACGCTACCAA
66615873 TTAATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAG
1 TTAATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAG
* * **
66615926 TTAATTTCCTTTTTATTGCATTTGCTATCTTTGATTAGTTTATTCATTTC
1 TTAATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTC
66615976 GAGCTATGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.21, C:0.16, G:0.07, T:0.56
Consensus pattern (53 bp):
TTAATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAG
Found at i:66616442 original size:46 final size:46
Alignment explanation
Indices: 66616375--66616614 Score: 304
Period size: 46 Copynumber: 5.2 Consensus size: 46
66616365 CAAACCAATT
**
66616375 GATTGAAGAAGCCACAAATCCTATACCCCTGAGCTGTAGTGGGATG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGCTGTAGTGGGATG
* * *
66616421 GATTGAAGAAGATACAAATCCTGTACCCTTGAGCTGCAGTGAGG-TG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGCTGTAGTG-GGATG
* ** *
66616467 GATTGAAGAAAATACAAATCCTATACCTTTGAGCTGCAGTGGGATG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGCTGTAGTGGGATG
* * *
66616513 GATTGAAGAAGATACAAATCCTATACACCAGAGCTGTAGTGAGATG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGCTGTAGTGGGATG
* * *
66616559 GATTGAAGATGATACAAATCCTATAGCCCTGAGTTGCT-GTGGGATG
1 GATTGAAGAAGATACAAATCCTATACCCCTGAGCTG-TAGTGGGATG
*
66616605 GATAGAAGAA
1 GATTGAAGAA
66616615 ACTAAAAAGT
Statistics
Matches: 168, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
45 2 0.01
46 163 0.97
47 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (46 bp):
GATTGAAGAAGATACAAATCCTATACCCCTGAGCTGTAGTGGGATG
Found at i:66627004 original size:46 final size:46
Alignment explanation
Indices: 66626954--66627244 Score: 150
Period size: 46 Copynumber: 6.5 Consensus size: 46
66626944 AGATCGAAGC
* *
66626954 CACAATCCTTATCTCTCTGAAGTTGCAGTTGAGCAAGATAAAAATA
1 CACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATA
* * * * * * *
66627000 CACAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAATTA
1 CACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATA
* * * *** * * * **
66627046 -TCAATTCTTACTTTTTTTGAAGTTCCAGCGGAG-TAGATAGAAGCTA
1 CACAATCCTTA-TCTCCCTGAAGTTGCAGTGGAGCAAGATA-AAAATA
* * * * * ** **
66627092 CA-AAT-CTTTTCTCCCTGAAATTACATTAGAGC-AGAT-CGAAGC
1 CACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATA
* *
66627134 CACAATCC-T-TCTCTCTGAAGTTGCAGTAGAGCAAGATAAAAATA
1 CACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATA
* * * * * *
66627178 CACAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTA
1 CACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATA
* *
66627224 C-CAATTCTTATCTCCTTGAAG
1 CACAATCCTTATCTCCCTGAAG
66627245 ATTTAGTGGA
Statistics
Matches: 174, Mismatches: 61, Indels: 21
0.68 0.24 0.08
Matches are distributed among these distances:
42 21 0.12
43 8 0.05
44 27 0.16
45 30 0.17
46 88 0.51
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (46 bp):
CACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAAATA
Found at i:66627218 original size:178 final size:179
Alignment explanation
Indices: 66626823--66627310 Score: 660
Period size: 178 Copynumber: 2.7 Consensus size: 179
66626813 CTACAAGTCG
*
66626823 CAAACCGTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTATCAATTCTTACCTCCTTGAAG
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTATCAATTCTTACCTCCTTGAAG
* * ** * *
66626888 TTTCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCTTTGAAATTACATTGGATCAGATCGAAG
66 TTCCAGCAGAGTAGATAGAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGCAGATCGAAG
*
66626953 CCACAATCCTTATCTCTCTGAAGTTGCAGTTGAGCAAGATAAAAATACA
131 CCACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAAGATAAAAATACA
* * * **
66627002 CAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTGAAATTATCAATTCTTACTTTTTTTGAA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTATCAATTCTTAC-CTCCTTGAA
* *
66627067 GTTCCAGCGGAGTAGATAGAAGCTACAAATCTTTTCTCCCTGAAATTACATTAGAGCAGATCGAA
65 GTTCCAGCAGAGTAGATAGAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGCAGATCGAA
66627132 GCCACAATCC-T-TCTCTCTGAAGTTGCAGTAGAGCAAGATAAAAATACA
130 GCCACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAAGATAAAAATACA
* * *
66627180 CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAG
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTATCAATTCTTACCTCCTTGAAG
* ** * * * * * * * *
66627245 ATT-TAGTGGAGTAGATCA-AAACTACAAATCCCTTTTCCTTGAAATTATATTGGAGCTGACCGA
66 -TTCCAGCAGAGTAGAT-AGAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGCAGATCGA
66627308 AGC
129 AGC
66627311 ACCATTTCCT
Statistics
Matches: 272, Mismatches: 34, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
177 57 0.21
178 89 0.33
179 53 0.19
180 73 0.27
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (179 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTATCAATTCTTACCTCCTTGAAG
TTCCAGCAGAGTAGATAGAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGCAGATCGAAG
CCACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAAGATAAAAATACA
Found at i:66628767 original size:11 final size:11
Alignment explanation
Indices: 66628747--66628776 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
66628737 CTTTTACGTT
66628747 TATCATTATTG
1 TATCATTATTG
*
66628758 TATTATTATTG
1 TATCATTATTG
66628769 TATCATTA
1 TATCATTA
66628777 ACTTTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (11 bp):
TATCATTATTG
Found at i:66629038 original size:3 final size:3
Alignment explanation
Indices: 66629030--66629082 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
66629020 TATTTTACCT
66629030 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
66629078 TTA TT
1 TTA TT
66629083 TATTTATTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:66636742 original size:87 final size:87
Alignment explanation
Indices: 66636596--66636768 Score: 328
Period size: 87 Copynumber: 2.0 Consensus size: 87
66636586 CTACGAGGCC
66636596 TCAAACATTCGTTAGAAGCCATTCGAAACCAACTCGGGTCCTTAAACTGACTTAATAAAGATGAC
1 TCAAACATTCGTTAGAAGCCATTCGAAACCAACTCGGGTCCTTAAACTGACTTAATAAAGATGAC
*
66636661 CCTTGAAACATGGCACACGTCT
66 CCTTGAAACAGGGCACACGTCT
*
66636683 TCAAACATTCGTTGGAAGCCATTCGAAACCAACTCGGGTCCTTAAACTGACTTAATAAAGATGAC
1 TCAAACATTCGTTAGAAGCCATTCGAAACCAACTCGGGTCCTTAAACTGACTTAATAAAGATGAC
66636748 CCTTGAAACAGGGCACACGTC
66 CCTTGAAACAGGGCACACGTC
66636769 CATGTGGAAA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (87 bp):
TCAAACATTCGTTAGAAGCCATTCGAAACCAACTCGGGTCCTTAAACTGACTTAATAAAGATGAC
CCTTGAAACAGGGCACACGTCT
Found at i:66641160 original size:48 final size:48
Alignment explanation
Indices: 66641031--66641360 Score: 308
Period size: 48 Copynumber: 6.8 Consensus size: 48
66641021 AAAAGGGTCA
** * * * *
66641031 AATGCCGATGCCATGTCCTGGACATGGTCTTAAACTGGTTCTTATACATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG--CTTACATATC
** * * *
66641081 GGTG-CGAATGCCATG-CCCTAGACATGTTCTTACACTGGCTTACATAAC
1 AATGCCG-ATGCCATGTCCC-AGACATGGTCTTACACTAGCTTACATATC
* * * * * *
66641129 AATGCCGATGCCATATTCCAAACATGGTCTTACACTGGCTCACATATT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATC
* * *
66641177 GAGGCCGATGCCATGTCCCAGGCATGGTCTTACACTAGCTGT-CATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATATC
*
66641225 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATATC
* * * * * * *
66641273 AATGTCGATGTCATGTTCCAAACATGGTCTTACTCTAGCTCACATATT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATC
* *
66641321 GAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
66641361 CTCATAACCC
Statistics
Matches: 229, Mismatches: 45, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
48 195 0.85
49 8 0.03
50 26 0.11
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATC
Found at i:66641296 original size:144 final size:144
Alignment explanation
Indices: 66641034--66641366 Score: 440
Period size: 144 Copynumber: 2.3 Consensus size: 144
66641024 AGGGTCAAAT
** * * * *
66641034 GCCGATGCCATGTCCTGGACATGGTCTTAAACTGGTTCTTATA-C-ATCGGTGCGAATGCCATGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAT--GT-CG-ATGCCATGC
* *
66641097 CCTAGACATGTTCTTACACTGGCTTACATAACAATGCCGATGCCATATTCCAAACATGGTCTTAC
62 CCTAGACATGGTCTTACACTAGCTTACATAACAATGCCGATGCCATATTCCAAACATGGTCTTAC
*
66641162 ACTGGCTCACATATTGAG
127 ACTAGCTCACATATTGAG
* *
66641180 GCCGATGCCATGTCCCAGGCATGGTCTTACACTAGCTGTCATATCAATGTCGATGCCATGTCCC-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATG-CCCT
* * * * *
66641244 AGACATGGTCTTACACTAGCTCT-CATATCAATGTCGATGTCATGTTCCAAACATGGTCTTACTC
65 AGACATGGTCTTACACTAGCT-TACATAACAATGCCGATGCCATATTCCAAACATGGTCTTACAC
66641308 TAGCTCACATATTGAG
129 TAGCTCACATATTGAG
66641324 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
66641367 ACCCTAGTAT
Statistics
Matches: 165, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
144 119 0.72
145 6 0.04
146 37 0.22
147 1 0.01
148 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGCCCTA
GACATGGTCTTACACTAGCTTACATAACAATGCCGATGCCATATTCCAAACATGGTCTTACACTA
GCTCACATATTGAG
Found at i:66641361 original size:48 final size:48
Alignment explanation
Indices: 66641088--66641366 Score: 317
Period size: 48 Copynumber: 5.8 Consensus size: 48
66641078 ATCGGTGCGA
* * * *
66641088 ATGCCATG-CCCTAGACATGTTCTTACACTGGCTTACATAACAATGCCG
1 ATGCCATGTCCC-AGACATGGTCTTACACTAGCTCACATATCAATGCCG
* * * * ** *
66641136 ATGCCATATTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* ** *
66641184 ATGCCATGTCCCAGGCATGGTCTTACACTAGCTGTCATATCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* *
66641232 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* * * * ** *
66641280 ATGTCATGTTCCAAACATGGTCTTACTCTAGCTCACATATTGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
*
66641328 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
66641367 ACCCTAGTAT
Statistics
Matches: 194, Mismatches: 36, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
48 192 0.99
49 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
Found at i:66642418 original size:22 final size:22
Alignment explanation
Indices: 66642391--66642433 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
66642381 ATAATTTGGT
**
66642391 TTTAAAAGGTGTTCAAAAACTG
1 TTTAAAAACTGTTCAAAAACTG
*
66642413 TTTAAAAACTGTTTAAAAACT
1 TTTAAAAACTGTTCAAAAACT
66642434 AATTGAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (22 bp):
TTTAAAAACTGTTCAAAAACTG
Found at i:66642430 original size:10 final size:11
Alignment explanation
Indices: 66642400--66642433 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
66642390 TTTTAAAAGG
*
66642400 TGTTCAAAAAC
1 TGTTTAAAAAC
66642411 TGTTTAAAAAC
1 TGTTTAAAAAC
66642422 TGTTTAAAAAC
1 TGTTTAAAAAC
66642433 T
1 T
66642434 AATTGAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (11 bp):
TGTTTAAAAAC
Found at i:66643984 original size:20 final size:22
Alignment explanation
Indices: 66643959--66644001 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
66643949 GCACGAATCT
66643959 ATCAAAAAT-AGT-TAAAATTA
1 ATCAAAAATAAGTATAAAATTA
*
66643979 ATCAAAATTAAGTATAAAATTA
1 ATCAAAAATAAGTATAAAATTA
66644001 A
1 A
66644002 ATAAATTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 9 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (22 bp):
ATCAAAAATAAGTATAAAATTA
Found at i:66649571 original size:14 final size:15
Alignment explanation
Indices: 66649545--66649573 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
66649535 GGGAGACAAC
66649545 CTAAAATAATAATTT
1 CTAAAATAATAATTT
66649560 CTAAAA-AATAATTT
1 CTAAAATAATAATTT
66649574 ATCATACTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (15 bp):
CTAAAATAATAATTT
Found at i:66650043 original size:31 final size:31
Alignment explanation
Indices: 66650007--66650077 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
66649997 AAAAATTGAA
*
66650007 AAAATAAAAAAATA-AAGTTCAGAATAAAAAT
1 AAAATAAAAAAATATAAG-TCAGAACAAAAAT
* **
66650038 AAAAT-AAAACATATAAGTCTTAACAAAAAT
1 AAAATAAAAAAATATAAGTCAGAACAAAAAT
66650068 AAAATAAAAA
1 AAAATAAAAA
66650078 CAACTAACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
30 22 0.65
31 12 0.35
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (31 bp):
AAAATAAAAAAATATAAGTCAGAACAAAAAT
Found at i:66653088 original size:47 final size:49
Alignment explanation
Indices: 66653011--66653143 Score: 172
Period size: 46 Copynumber: 2.8 Consensus size: 49
66653001 TGTAACCCGC
*
66653011 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
66653061 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
66653104 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
66653144 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 30 0.42
47 29 0.40
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:66653159 original size:46 final size:44
Alignment explanation
Indices: 66653019--66653159 Score: 144
Period size: 46 Copynumber: 3.0 Consensus size: 44
66653009 GCCCATAAGC
66653019 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-T
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
66653066 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
66653112 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
66653158 GA
1 GA
66653160 CATGTCACTT
Statistics
Matches: 80, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 34 0.43
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:66682148 original size:30 final size:30
Alignment explanation
Indices: 66682114--66682174 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
66682104 TCCTTAACTC
66682114 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
66682144 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
66682174 A
1 A
66682175 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:66696936 original size:57 final size:59
Alignment explanation
Indices: 66696854--66696974 Score: 158
Period size: 57 Copynumber: 2.1 Consensus size: 59
66696844 ATAAATGGTG
* * *
66696854 AAATGGAGAAATATAAAACATTTGGAAATGATTAAGGTTTTCTCTAAAATG-AAAATGA
1 AAATGGAGAAATATAAAACATTTGGAAATGAATAAGATTTTCTCCAAAATGAAAAATGA
* **
66696912 AAATGGAGAAATGA-AATA-ATTTGGAAATGAATGTGATTTTCTCCAAAATGAAAAATGA
1 AAATGGAGAAAT-ATAAAACATTTGGAAATGAATAAGATTTTCTCCAAAATGAAAAATGA
66696970 AAATG
1 AAATG
66696975 ATTTGAAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
57 27 0.49
58 27 0.49
59 1 0.02
ACGTcount: A:0.49, C:0.05, G:0.18, T:0.28
Consensus pattern (59 bp):
AAATGGAGAAATATAAAACATTTGGAAATGAATAAGATTTTCTCCAAAATGAAAAATGA
Found at i:66698118 original size:18 final size:18
Alignment explanation
Indices: 66698095--66698145 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
66698085 TCTTATATTT
66698095 TTATTTTTAAAATATTAA
1 TTATTTTTAAAATATTAA
*
66698113 TTATTTTAAAAATA-TAA
1 TTATTTTTAAAATATTAA
*
66698130 -T-TTTTTAAAAAATTAA
1 TTATTTTTAAAATATTAA
66698146 AATATGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 9 0.31
16 4 0.14
17 3 0.10
18 13 0.45
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTATTTTTAAAATATTAA
Found at i:66698119 original size:17 final size:15
Alignment explanation
Indices: 66698098--66698145 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 15
66698088 TATATTTTTA
66698098 TTTTTAAAATATTAAT
1 TTTTTAAAA-ATTAAT
66698114 TATTTTAAAAATATAAT
1 T-TTTTAAAAAT-TAAT
66698131 TTTTTAAAAAATTAA
1 TTTTT-AAAAATTAA
66698146 AATATGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 10 0.34
17 19 0.66
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTTTAAAAATTAAT
Found at i:66700212 original size:25 final size:25
Alignment explanation
Indices: 66700183--66700231 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
66700173 CTTCCTGATT
*
66700183 ATGGCTCTCATGAGCTTCCCGTTAC
1 ATGGCTCACATGAGCTTCCCGTTAC
*
66700208 ATGGCTCACATGAGCTTCCTGTTA
1 ATGGCTCACATGAGCTTCCCGTTA
66700232 TAAGGCTCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.20, T:0.33
Consensus pattern (25 bp):
ATGGCTCACATGAGCTTCCCGTTAC
Found at i:66700238 original size:25 final size:24
Alignment explanation
Indices: 66700173--66700239 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
66700163 TCTTTGTGAA
*
66700173 CTTCCTGATTAT-GGCTCTCATGAG
1 CTTCCTG-TTATAGGCTCACATGAG
* *
66700197 CTTCCCGTTACATGGCTCACATGAG
1 CTTCCTGTTATA-GGCTCACATGAG
66700222 CTTCCTGTTATAAGGCTC
1 CTTCCTGTTAT-AGGCTC
66700240 GAGAGTGTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 3 0.09
24 6 0.17
25 25 0.71
26 1 0.03
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.34
Consensus pattern (24 bp):
CTTCCTGTTATAGGCTCACATGAG
Found at i:66706288 original size:25 final size:25
Alignment explanation
Indices: 66706259--66706306 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66706249 TTATACCATG
* * *
66706259 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
66706284 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
66706307 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:66706375 original size:20 final size:20
Alignment explanation
Indices: 66706350--66706408 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
66706340 TAAATATGGT
66706350 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
66706370 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
66706390 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
66706409 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:66706390 original size:11 final size:11
Alignment explanation
Indices: 66706354--66706408 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
66706344 TATGGTATGT
66706354 ATGATATGCAC
1 ATGATATGCAC
* *
66706365 ATGAAATG--T
1 ATGATATGCAC
66706374 ATGATATGCAC
1 ATGATATGCAC
*
66706385 ATGATATG--T
1 ATGATATGCAC
66706394 ATGATATGCAC
1 ATGATATGCAC
66706405 ATGA
1 ATGA
66706409 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:66706486 original size:24 final size:24
Alignment explanation
Indices: 66706459--66706611 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
66706449 GAGGAAGTGA
66706459 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66706483 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66706507 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66706531 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
66706554 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * * *
66706578 GAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATC
66706602 AAAAGAGGCT
1 AAAAG-GGCT
66706612 ATGTAACACC
Statistics
Matches: 123, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
23 23 0.19
24 96 0.78
25 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:66708005 original size:71 final size:71
Alignment explanation
Indices: 66707921--66708084 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66707911 CGATTTGTCT
66707921 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66707986 CTTTCA
66 CTTTCA
66707992 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66708057 CTTTCA
66 CTTTCA
66708063 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
66708085 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:66708122 original size:71 final size:70
Alignment explanation
Indices: 66707921--66708118 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
66707911 CGATTTGTCT
* * * *
66707921 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
66707986 CTTTCA
65 CTTTCA
* * * *
66707992 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
66708057 CTTTCA
65 CTTTCA
* *
66708063 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
66708119 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:66709620 original size:31 final size:31
Alignment explanation
Indices: 66709585--66709648 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
66709575 CATTTACAGT
66709585 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
66709616 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
66709647 AA
1 AA
66709649 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:66712010 original size:41 final size:41
Alignment explanation
Indices: 66711965--66712082 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
66711955 TGAAAGATAA
66711965 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
66712006 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66712036 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66712077 ATGTAG
1 ATGTAG
66712083 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:66712021 original size:71 final size:71
Alignment explanation
Indices: 66711933--66712096 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66711923 GAGATGTATC
66711933 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66711998 AGGACA
66 AGGACA
66712004 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66712069 AGGACA
66 AGGACA
66712075 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
66712097 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:66716694 original size:20 final size:20
Alignment explanation
Indices: 66716669--66716707 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
66716659 TATGTATGAC
* *
66716669 CCATTTTTAGGGACACGGGA
1 CCATTTTGAGGCACACGGGA
66716689 CCATTTTGAGGCACACGGG
1 CCATTTTGAGGCACACGGG
66716708 CTAGCCACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (20 bp):
CCATTTTGAGGCACACGGGA
Found at i:66718598 original size:79 final size:80
Alignment explanation
Indices: 66718455--66718662 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
66718445 ACCTTCGGAG
* * ** * * * *
66718455 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
66718519 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
66718534 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
66718596 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
66718613 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
66718663 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:66718607 original size:40 final size:40
Alignment explanation
Indices: 66718555--66718662 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
66718545 TATCACGATT
** *
66718555 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
66718595 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
66718635 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
66718663 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:66726566 original size:79 final size:80
Alignment explanation
Indices: 66726423--66726630 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
66726413 ACCTTCGGAG
* * ** * * * *
66726423 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
66726487 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
66726502 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
66726564 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
66726581 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
66726631 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:66726575 original size:40 final size:40
Alignment explanation
Indices: 66726523--66726630 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
66726513 TATCACGATT
** *
66726523 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
66726563 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
66726603 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
66726631 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:66730578 original size:16 final size:16
Alignment explanation
Indices: 66730559--66730589 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66730549 CTTCTTCACT
66730559 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
66730575 TACTTACTTACTTAA
1 TACTCACTTACTTAA
66730590 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:66730595 original size:20 final size:20
Alignment explanation
Indices: 66730556--66730595 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
66730546 AAACTTCTTC
* *
66730556 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
66730576 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
66730596 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:66730909 original size:53 final size:54
Alignment explanation
Indices: 66730820--66731035 Score: 251
Period size: 55 Copynumber: 4.0 Consensus size: 54
66730810 TATGTGGTAT
* * *
66730820 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * *
66730874 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTG
* * * * *
66730927 CCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
*
66730982 CCTTA-GAAACCTTACCAATTCCCATGCCTT-AGCATGGTCTTACATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTT
66731036 AAACCCTAAT
Statistics
Matches: 136, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
52 2 0.01
53 47 0.35
54 15 0.11
55 70 0.51
56 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:66730980 original size:108 final size:110
Alignment explanation
Indices: 66730828--66731028 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
66730818 ATCCTTTTGA
* *
66730828 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
* *
66730891 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTCCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
66730936 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
66731001 TCCCATGCCTTAGCATGGTCTTACATGG
66 TCCCATGCCTTAGCATGGTCTTACATGG
66731029 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 7 0.08
110 26 0.31
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TCCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:66735585 original size:15 final size:15
Alignment explanation
Indices: 66735565--66735594 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66735555 TGGGGTGCCC
*
66735565 TGCTTCTATTTGTAA
1 TGCTTCTATTCGTAA
66735580 TGCTTCTATTCGTAA
1 TGCTTCTATTCGTAA
66735595 AGAAGAAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (15 bp):
TGCTTCTATTCGTAA
Found at i:66740120 original size:40 final size:40
Alignment explanation
Indices: 66740065--66740285 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
66740055 TATTCGAATG
*
66740065 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
66740105 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66740145 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66740184 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66740224 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
66740264 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
66740286 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 52 0.31
40 114 0.68
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:66740203 original size:79 final size:80
Alignment explanation
Indices: 66740065--66740285 Score: 367
Period size: 79 Copynumber: 2.8 Consensus size: 80
66740055 TATTCGAATG
*
66740065 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
66740130 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
*
66740145 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
66740209 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * *
66740224 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
66740286 TACTTGGTTT
Statistics
Matches: 134, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
79 92 0.69
80 40 0.30
81 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:66740281 original size:119 final size:119
Alignment explanation
Indices: 66740065--66740285 Score: 390
Period size: 119 Copynumber: 1.9 Consensus size: 119
66740055 TATTCGAATG
*
66740065 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
66740130 TTTGTGCTATTGACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66 TTTGTGCGATTGACTATATCCGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
*
66740184 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
66740249 TTTGTGCGAGTTG-CTATATCCGGCTAAATCCCGAAGG
66 TTTGTGCGA-TTGACTATATCCGGCTAAATCCCGAAGG
66740286 TACTTGGTTT
Statistics
Matches: 97, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
119 94 0.97
120 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (119 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGATTGACTATATCCGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:66751653 original size:40 final size:40
Alignment explanation
Indices: 66751583--66751763 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
66751573 TATTCGAATG
*
66751583 ATATCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66751622 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66751662 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66751702 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
66751742 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
66751764 TACTTGGTTT
Statistics
Matches: 131, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 29 0.22
40 100 0.76
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:66754204 original size:20 final size:20
Alignment explanation
Indices: 66754179--66754230 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
66754169 AGGGACAAAA
66754179 ATGAAAAGATGTAAAATTTG
1 ATGAAAAGATGTAAAATTTG
* *
66754199 ATGAAAA-ATTCTAAAATTTT
1 ATGAAAAGA-TGTAAAATTTG
*
66754219 ATGAATAGATGT
1 ATGAAAAGATGT
66754231 GCTGGAAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.15, T:0.35
Consensus pattern (20 bp):
ATGAAAAGATGTAAAATTTG
Found at i:66756101 original size:140 final size:140
Alignment explanation
Indices: 66755916--66756212 Score: 513
Period size: 140 Copynumber: 2.1 Consensus size: 140
66755906 CGTGCGTGCC
*
66755916 ACACGGCCTCTAACACAAGAAAGTGTCTTGGCCGTACGAAACCTACACCTAATTTCGAATTGAAT
1 ACACGGCCTCCAACACAAGAAAGTGTCTTGGCCGTACGAAACCTACACCTAATTTCGAATTGAAT
* *
66755981 TAATTAACCACACGGCCCAGCACACAGGCATATGGCATGGGCGTGTGTACAAGTCAGAGAGTTAC
66 TAATTAACCACACGACCCAGCACACAGGCATATGGCATGGCCGTGTGTACAAGTCAGAGAGTTAC
*
66756046 ACAGGGCCGA
131 ACAAGGCCGA
* * *
66756056 ACACGGCCTCCAACACAAGCAAGTGTCTTGGCCGTATGAAACCTACACCTAATTTTGAATTGAAT
1 ACACGGCCTCCAACACAAGAAAGTGTCTTGGCCGTACGAAACCTACACCTAATTTCGAATTGAAT
* *
66756121 TAATTAACCACACGACCCAGCATATAGGCATATGGCATGGCCGTGTGTACAAGTCAGAGAGTTAC
66 TAATTAACCACACGACCCAGCACACAGGCATATGGCATGGCCGTGTGTACAAGTCAGAGAGTTAC
66756186 ACAAGGCCGA
131 ACAAGGCCGA
66756196 ACACGGCCTCCAACACA
1 ACACGGCCTCCAACACA
66756213 GGCATGTCCC
Statistics
Matches: 148, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
140 148 1.00
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.20
Consensus pattern (140 bp):
ACACGGCCTCCAACACAAGAAAGTGTCTTGGCCGTACGAAACCTACACCTAATTTCGAATTGAAT
TAATTAACCACACGACCCAGCACACAGGCATATGGCATGGCCGTGTGTACAAGTCAGAGAGTTAC
ACAAGGCCGA
Found at i:66758434 original size:71 final size:71
Alignment explanation
Indices: 66758267--66758427 Score: 234
Period size: 71 Copynumber: 2.3 Consensus size: 71
66758257 CTAACCGATT
66758267 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
** *
66758332 TTTATC
66 TACAGC
* * *
66758338 TTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTAC-
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
*
66758402 TACAGGG
66 TACA-GC
*
66758409 TGTCTCGTAGCTTTCTTGT
1 TGTCTCGTAGCTCTCTTGT
66758428 ACACATGATG
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
70 2 0.03
71 77 0.97
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (71 bp):
TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
TACAGC
Found at i:66765946 original size:70 final size:71
Alignment explanation
Indices: 66765780--66765939 Score: 225
Period size: 70 Copynumber: 2.3 Consensus size: 71
66765770 CCAACCGATT
66765780 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
** *
66765845 TTTATC
66 TACAGC
* * *
66765851 TTTCACGTAGCTCTCTTGTCTACATGG-GTCCTTCACTTGGAATCACGCATGTGACCTAGCTAC-
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
*
66765914 TACAGGG
66 TACA-GC
*
66765921 TGTCTCGTAGCTTTCTTGT
1 TGTCTCGTAGCTCTCTTGT
66765940 ACACATGATG
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
69 2 0.03
70 51 0.65
71 25 0.32
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (71 bp):
TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
TACAGC
Found at i:66769203 original size:44 final size:42
Alignment explanation
Indices: 66769153--66769247 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 42
66769143 TGTGTTATCC
*
66769153 TGTAAGACCACATCTAGGACATTGGCATCG-ACTTATGATTTGCG
1 TGTAAGACCACATCTAGGACATCGGCATCGTA-TT-TGATTT-CG
** * *
66769197 TGTAAGACCATGTTTAGGATATCGGCATCGTATTTGATTTCG
1 TGTAAGACCACATCTAGGACATCGGCATCGTATTTGATTTCG
66769239 TGTAAGACC
1 TGTAAGACC
66769248 TTGCCTGGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 11 0.24
43 6 0.13
44 27 0.60
45 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACATCTAGGACATCGGCATCGTATTTGATTTCG
Found at i:66769266 original size:42 final size:42
Alignment explanation
Indices: 66769220--66769317 Score: 97
Period size: 43 Copynumber: 2.3 Consensus size: 42
66769210 TTAGGATATC
* * * **
66769220 GGCATCGTATTTGATTTCGTGTAAGACCTTGCCTGGGACAGT
1 GGCATAGTATTTGATTACATGTAAGACCACGCCTGGGACAGT
* * * *
66769262 GGCATTAATATTTGGTTACATGTAAGACCACGTCTGGGACATT
1 GGCA-TAGTATTTGATTACATGTAAGACCACGCCTGGGACAGT
*
66769305 GGCATTGTATTTG
1 GGCATAGTATTTG
66769318 TTTTTCGAGT
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
42 11 0.25
43 33 0.75
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (42 bp):
GGCATAGTATTTGATTACATGTAAGACCACGCCTGGGACAGT
Found at i:66769274 original size:43 final size:43
Alignment explanation
Indices: 66769227--66769310 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 43
66769217 ATCGGCATCG
* * **
66769227 TATTTGATTTCGTGTAAGACCTTGCCTGGGACAGTGGCATTAA
1 TATTTGATTACATGTAAGACCACGCCTGGGACAGTGGCATTAA
* * *
66769270 TATTTGGTTACATGTAAGACCACGTCTGGGACATTGGCATT
1 TATTTGATTACATGTAAGACCACGCCTGGGACAGTGGCATT
66769311 GTATTTGTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.35
Consensus pattern (43 bp):
TATTTGATTACATGTAAGACCACGCCTGGGACAGTGGCATTAA
Found at i:66781779 original size:27 final size:28
Alignment explanation
Indices: 66781723--66781792 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
66781713 AAATTTGTAC
66781723 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
66781751 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
66781778 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
66781793 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:66789688 original size:27 final size:28
Alignment explanation
Indices: 66789632--66789701 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
66789622 AAATTTGTAC
66789632 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
66789660 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
66789687 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
66789702 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Done.