Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 231 of 345
Found at i:67502828 original size:31 final size:30
Alignment explanation
Indices: 67502749--67502821 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 30
67502739 GGTGAGAGTT
*
67502749 ACAGTTTGAGTTAAACAAGAAAAGTATAGC
1 ACAGTTTGAGTGAAACAAGAAAAGTATAGC
*
67502779 ACAGTTTGAGTTAAACAAGAAAAGTATAGC
1 ACAGTTTGAGTGAAACAAGAAAAGTATAGC
67502809 -CATGTTGTGAGTG
1 ACA-GTT-TGAGTG
67502822 GTACAAGTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
29 2 0.05
30 33 0.82
31 5 0.12
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (30 bp):
ACAGTTTGAGTGAAACAAGAAAAGTATAGC
Found at i:67503918 original size:20 final size:21
Alignment explanation
Indices: 67503879--67503918 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
67503869 GTTATAATGA
*
67503879 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
67503900 CCACACGGGCATG-TGCCCT
1 CCACACGGGCATGTTGCCCT
67503919 ATCTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:67509114 original size:27 final size:28
Alignment explanation
Indices: 67509052--67509121 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
67509042 AAACTTGTTC
67509052 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
67509080 AGCACTAAGTGTGCGAG-TTGTTTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
67509107 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67509122 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:67509132 original size:27 final size:27
Alignment explanation
Indices: 67509052--67509133 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
67509042 AAACTTGTTC
* *
67509052 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* ***
67509080 AGCACTAAGTGTGCGAGTTGTTTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
67509107 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
67509134 GCTTTTGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 28 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:67515985 original size:29 final size:29
Alignment explanation
Indices: 67515924--67516113 Score: 240
Period size: 29 Copynumber: 6.6 Consensus size: 29
67515914 TACTCGATTT
* *
67515924 CGCACACTTAGTGCCAT-TCGATTT-AAGCC
1 CGCACACTTAGTGCCATAT--ATTTCCAGCA
* *** * *
67515953 CGCACACATAGTGCCATAGCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** *
67515982 CGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
67516011 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67516040 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67516069 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67516098 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67516114 ATCTCGTCAC
Statistics
Matches: 140, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
28 2 0.01
29 138 0.99
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:67521655 original size:29 final size:27
Alignment explanation
Indices: 67521621--67521723 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
67521611 TACTCAATCA
*
67521621 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
67521650 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
67521679 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
67521708 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67521724 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:67529452 original size:29 final size:27
Alignment explanation
Indices: 67529418--67529520 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
67529408 TACTCAATCA
*
67529418 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
67529447 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
67529476 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
67529505 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67529521 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:67533276 original size:40 final size:39
Alignment explanation
Indices: 67533151--67533268 Score: 173
Period size: 39 Copynumber: 3.0 Consensus size: 39
67533141 TTGCTAAGTG
**
67533151 AATTGTGCAAATTGTGATATCCGGGCTAAGCCTAAAGGC
1 AATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGC
* * *
67533190 AATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGC
*
67533229 AATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 AATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
67533269 CTTTGTGCGG
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
39 60 0.87
40 9 0.13
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (39 bp):
AATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:67541025 original size:39 final size:39
Alignment explanation
Indices: 67540982--67541100 Score: 159
Period size: 39 Copynumber: 3.1 Consensus size: 39
67540972 GTGAAAATTG
67540982 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
67541021 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
67541060 TGATATCCGGG-TTAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
67541099 TG
1 TG
67541101 TCCCGAAGGC
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
38 3 0.04
39 66 0.96
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:67541106 original size:26 final size:25
Alignment explanation
Indices: 67541067--67541115 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
67541057 TTGTGATATC
67541067 CGGGTTAGTCCCGAAGGCCTTTGTG
1 CGGGTTAGTCCCGAAGGCCTTTGTG
*
67541092 CGGGTTATGTCCCGAAGGCGTTTG
1 CGGGTTA-GTCCCGAAGGCCTTTG
67541116 AACGAGTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.12, C:0.22, G:0.37, T:0.29
Consensus pattern (25 bp):
CGGGTTAGTCCCGAAGGCCTTTGTG
Found at i:67543768 original size:46 final size:46
Alignment explanation
Indices: 67543718--67543889 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
67543708 TGGTTGAGCA
67543718 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67543764 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67543809 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67543857 CCCGAGCT-GTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67543890 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 28 0.26
46 35 0.33
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67549280 original size:46 final size:45
Alignment explanation
Indices: 67549230--67549401 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
67549220 TGGTTGAGCA
67549230 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
67549276 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
67549322 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
67549368 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67549402 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67549384 original size:92 final size:92
Alignment explanation
Indices: 67549227--67549396 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
67549217 GGATGGTTGA
* *
67549227 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67549292 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
67549319 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67549384 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67549397 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:67551773 original size:21 final size:22
Alignment explanation
Indices: 67551747--67551800 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
67551737 CGGCCTCTAG
**
67551747 CACGGGCGTGTCCC-AGGGTCA
1 CACGGGCGTGTCCCTAGGACCA
** *
67551768 CACGGGTTTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
67551790 CACGGGCGTGT
1 CACGGGCGTGT
67551801 GAGCTCTGCA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.20
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:67552496 original size:45 final size:45
Alignment explanation
Indices: 67552441--67552529 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
67552431 CTTTAATATC
67552441 ACGATCCAAAACCTGAACCGGCACCTCCTCAAAAGTCAAGTCTGT
1 ACGATCCAAAACCTGAACCGGCACCTCCTCAAAAGTCAAGTCTGT
*
67552486 ACGATCCAAAATCTGAACCGGCACCTCCTCAAAAGTCAAGTCTG
1 ACGATCCAAAACCTGAACCGGCACCTCCTCAAAAGTCAAGTCTG
67552530 GTCTAACCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.33, G:0.16, T:0.18
Consensus pattern (45 bp):
ACGATCCAAAACCTGAACCGGCACCTCCTCAAAAGTCAAGTCTGT
Found at i:67554404 original size:37 final size:37
Alignment explanation
Indices: 67554350--67554457 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
67554340 GCTCAGACGA
* *
67554350 AATCTCCACACGAAGTCATTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
67554387 ACTCTCCACACGTAGTCATCCGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
67554424 AATTTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
67554458 ATATATTTCC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:67554573 original size:48 final size:48
Alignment explanation
Indices: 67554502--67554789 Score: 441
Period size: 48 Copynumber: 6.0 Consensus size: 48
67554492 TGTTACAACC
*
67554502 TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
67554550 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * ** *
67554598 TTTACATTCGCCATTCGGCTTTACCACGTATACATATCTCGTATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
67554646 TTCACATTCGCCATTCTGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
67554694 TTCACATTAGCCATTCGGCTTTACCACGTATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
67554742 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
67554790 ATATTTATCT
Statistics
Matches: 215, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 215 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:67554697 original size:144 final size:144
Alignment explanation
Indices: 67554502--67554776 Score: 496
Period size: 144 Copynumber: 1.9 Consensus size: 144
67554492 TGTTACAACC
67554502 TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
* *
67554567 ACTTTACCACATATACATATCACACATATATTTTACATTCGCCATTCGGCTTTACCACGTATACA
66 ACTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
67554632 TATCTCGTATGTAT
131 TATCTCGTATGTAT
* *
67554646 TTCACATTCGCCATTCTGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
* *
67554711 GCTTTACCACGTATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
66 ACTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
67554776 T
131 T
67554777 TTCACACATA
Statistics
Matches: 125, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 125 1.00
ACGTcount: A:0.29, C:0.28, G:0.07, T:0.36
Consensus pattern (144 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
ACTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
TATCTCGTATGTAT
Found at i:67562625 original size:50 final size:47
Alignment explanation
Indices: 67562516--67562783 Score: 179
Period size: 47 Copynumber: 5.7 Consensus size: 47
67562506 GGTATAATGC
* *
67562516 CGATGCCATGTCCCGGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
* *
67562563 CAATGCCATGTCCCAGACATGGTCTTGCACTAGCTC-TCACAT-ATACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCA-A-GT
* * * * *
67562611 GCTGATGCCATGTCCTAGACATGGTCTTATACT-GACACAT-C-TCGTAGC
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCCATC-AAGT
* * * *
67562659 CGATG-GATGTCCCAAACAT-GTCTTACACTGGCTCTTGCC-TCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-CCATCAA-GT
*
67562705 CGATG-CATGTCCCAGACAT-GTCTTACACTAG--CATTTCAT-AATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-TCCATCAA-GT
67562749 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ---CGATGCCATGTCCCAGACATGGTCTTACACTAGC
67562784 ACATACATAT
Statistics
Matches: 178, Mismatches: 24, Indels: 37
0.74 0.10 0.15
Matches are distributed among these distances:
44 19 0.11
45 15 0.08
46 39 0.22
47 68 0.38
48 4 0.02
49 4 0.02
50 28 0.16
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
Found at i:67567753 original size:1 final size:1
Alignment explanation
Indices: 67567749--67567780 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
67567739 CTTCTTCCTC
67567749 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
67567781 GCGAATAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:67568670 original size:12 final size:12
Alignment explanation
Indices: 67568655--67568688 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
67568645 TAAAATGAAT
67568655 TTTAAAAAGTAA
1 TTTAAAAAGTAA
67568667 TTTAAAAAGAGTAA
1 TTT-AAAA-AGTAA
67568681 TTTAAAAA
1 TTTAAAAA
67568689 TAAATTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.20
13 8 0.40
14 8 0.40
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (12 bp):
TTTAAAAAGTAA
Found at i:67568681 original size:14 final size:13
Alignment explanation
Indices: 67568652--67568688 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
67568642 AAATAAAATG
*
67568652 AATTTTAAAAAGT
1 AATTTAAAAAAGT
67568665 AATTTAAAAAGAGT
1 AATTTAAAAA-AGT
67568679 AATTTAAAAA
1 AATTTAAAAA
67568689 TAAATTACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
AATTTAAAAAAGT
Found at i:67569007 original size:20 final size:20
Alignment explanation
Indices: 67568982--67569021 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
67568972 CAACATCTAG
*
67568982 GATTAAATTTTGAATTTCAA
1 GATTAAATATTGAATTTCAA
67569002 GATTAAATATTGAATTTCAA
1 GATTAAATATTGAATTTCAA
67569022 AAGAGTACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (20 bp):
GATTAAATATTGAATTTCAA
Found at i:67574543 original size:12 final size:12
Alignment explanation
Indices: 67574526--67574572 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
67574516 AAAAATCATT
67574526 AATAATTTAAAA
1 AATAATTTAAAA
*
67574538 AATAATATAATAAA
1 AATAAT-TTA-AAA
*
67574552 AATATTTTAAAA
1 AATAATTTAAAA
67574564 AAT-ATTTAA
1 AATAATTTAA
67574573 CTACTTTAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
11 5 0.17
12 12 0.41
13 4 0.14
14 8 0.28
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATAATTTAAAA
Found at i:67574548 original size:20 final size:18
Alignment explanation
Indices: 67574512--67574550 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
67574502 TTATGAATTT
*
67574512 ATTTAAAAATCATTAATA
1 ATTTAAAAATAATTAATA
67574530 ATTTAAAAAATAATATAATA
1 ATTT-AAAAATAAT-TAATA
67574550 A
1 A
67574551 AAATATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
ATTTAAAAATAATTAATA
Found at i:67595117 original size:20 final size:20
Alignment explanation
Indices: 67595072--67595153 Score: 85
Period size: 20 Copynumber: 4.0 Consensus size: 20
67595062 TATACCATAC
* *
67595072 TAGAGGCATCAAAGATGCGTAA
1 TAGAGGCACCAAAG-TGC-AAA
67595094 TAGAGGCACCAAAGTGCAAA
1 TAGAGGCACCAAAGTGCAAA
*
67595114 TAGAGTCA-CAGAAGTGCAAA
1 TAGAGGCACCA-AAGTGCAAA
* *
67595134 CAGCGGCACCAAAGTGCAAA
1 TAGAGGCACCAAAGTGCAAA
67595154 GCTGTATAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.04
20 32 0.62
21 5 0.10
22 13 0.25
ACGTcount: A:0.43, C:0.20, G:0.26, T:0.12
Consensus pattern (20 bp):
TAGAGGCACCAAAGTGCAAA
Found at i:67600448 original size:29 final size:29
Alignment explanation
Indices: 67600408--67600466 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
67600398 TCATGGAAGA
* *
67600408 GGTGGAGAACTTGTTCGTTGAGAGTTTGT
1 GGTGAAGAACTTGTTCGTTGAGAATTTGT
67600437 GGTGAAGAACTTGTTCGTTGAGAATTTGT
1 GGTGAAGAACTTGTTCGTTGAGAATTTGT
67600466 G
1 G
67600467 TCAAGGCAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.20, C:0.07, G:0.36, T:0.37
Consensus pattern (29 bp):
GGTGAAGAACTTGTTCGTTGAGAATTTGT
Found at i:67601516 original size:4 final size:4
Alignment explanation
Indices: 67601507--67601536 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
67601497 TATGCAAATT
67601507 AGAA AGAA AGAA AGAAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AG-AA AGAA AGAA AGAA A
67601537 AGAAGAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:67601527 original size:13 final size:13
Alignment explanation
Indices: 67601509--67601540 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
67601499 TGCAAATTAG
67601509 AAAGAAAGAAAGA
1 AAAGAAAGAAAGA
67601522 AAAGAAAGAAAGA
1 AAAGAAAGAAAGA
67601535 AAAGAA
1 AAAGAA
67601541 GAAGAGTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAGA
Found at i:67601979 original size:18 final size:19
Alignment explanation
Indices: 67601948--67601983 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
67601938 AAGCAAAATA
67601948 TAATGTGAAAATTGAATTT
1 TAATGTGAAAATTGAATTT
67601967 TAATGTG-AAATTGAATT
1 TAATGTGAAAATTGAATT
67601984 GTGTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (19 bp):
TAATGTGAAAATTGAATTT
Found at i:67604235 original size:40 final size:40
Alignment explanation
Indices: 67604176--67604393 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
67604166 TGGATGATAA
* * *
67604176 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTAACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
67604216 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67604256 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67604296 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
67604336 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67604376 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67604394 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67611337 original size:22 final size:22
Alignment explanation
Indices: 67611280--67611392 Score: 122
Period size: 22 Copynumber: 5.0 Consensus size: 22
67611270 CCTAAGCTGA
**
67611280 TGAACAGTAAGCTCTATTAAGC
1 TGAACAGTAAGCTCTATCGAGC
*
67611302 TGAAACGGTAAGCTCTATCGAGC
1 TG-AACAGTAAGCTCTATCGAGC
67611325 TGAACAGTAAGCTC-ATGCGAGC
1 TGAACAGTAAGCTCTAT-CGAGC
* *
67611347 TGAAACAGTAAGCTCTATTGATC
1 TG-AACAGTAAGCTCTATCGAGC
*
67611370 T-ATACAGTAAGCTCTTTCGAGC
1 TGA-ACAGTAAGCTCTATCGAGC
67611392 T
1 T
67611393 AAATCAAGAA
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
21 3 0.04
22 37 0.48
23 35 0.45
24 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:67611391 original size:45 final size:45
Alignment explanation
Indices: 67611280--67611439 Score: 150
Period size: 45 Copynumber: 3.5 Consensus size: 45
67611270 CCTAAGCTGA
* *
67611280 TGAACAGTAAGCTCTATT-AAGCTGAAACGGTAAGCTCTATCGAGC
1 TGAACAGTAAGCTCT-TTCGAGCTGAAACAGTAAGCTCTATCGAGC
* * * *
67611325 TGAACAGTAAGCTCATGCGAGCTGAAACAGTAAGCTCTATTGATC
1 TGAACAGTAAGCTCTTTCGAGCTGAAACAGTAAGCTCTATCGAGC
* *
67611370 T-ATACAGTAAGCTCTTTCGAGCT-AAATCAAG-AAGCTCCAAT-AAGC
1 TGA-ACAGTAAGCTCTTTCGAGCTGAAA-C-AGTAAGCT-CTATCGAGC
*
67611415 TGAAATAGTAAGCTCTTTCGAGCTG
1 TG-AACAGTAAGCTCTTTCGAGCTG
67611440 TAGTGAGTCC
Statistics
Matches: 95, Mismatches: 12, Indels: 14
0.79 0.10 0.12
Matches are distributed among these distances:
44 5 0.05
45 65 0.68
46 24 0.25
47 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (45 bp):
TGAACAGTAAGCTCTTTCGAGCTGAAACAGTAAGCTCTATCGAGC
Found at i:67611438 original size:23 final size:23
Alignment explanation
Indices: 67611282--67611439 Score: 123
Period size: 23 Copynumber: 7.0 Consensus size: 23
67611272 TAAGCTGATG
*
67611282 AACAGTAAGCTCTATT-AAGCTGA
1 AACAGTAAGCTCT-TTCGAGCTGA
* *
67611305 AACGGTAAGCTCTATCGAGCTG-
1 AACAGTAAGCTCTTTCGAGCTGA
* *
67611327 AACAGTAAGCTCATGCGAGCTGA
1 AACAGTAAGCTCTTTCGAGCTGA
*
67611350 AACAGTAAGCTCTATT-GATCT-A
1 AACAGTAAGCTCT-TTCGAGCTGA
*
67611372 TACAGTAAGCTCTTTCGAGCT-A
1 AACAGTAAGCTCTTTCGAGCTGA
** *
67611394 AATCAAG-AAGCTCCAAT-AAGCTGA
1 AA-C-AGTAAGCT-CTTTCGAGCTGA
*
67611418 AATAGTAAGCTCTTTCGAGCTG
1 AACAGTAAGCTCTTTCGAGCTG
67611440 TAGTGAGTCC
Statistics
Matches: 105, Mismatches: 20, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
21 2 0.02
22 42 0.40
23 53 0.50
24 8 0.08
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (23 bp):
AACAGTAAGCTCTTTCGAGCTGA
Found at i:67619286 original size:67 final size:67
Alignment explanation
Indices: 67619178--67619323 Score: 229
Period size: 67 Copynumber: 2.2 Consensus size: 67
67619168 TTTATGTGTC
* ** **
67619178 ACACGCCCATGTATCTAGGCCGTGGCAAAATAGGACATACATACTGACTTATTTACATGGTCTCA
1 ACACGCCCGTGTATCTAGGCCGTGGCAAAATAGGACATACATACTGACTTATCGACACAGTCTCA
67619243 AG
66 AG
* *
67619245 ACACGGCCGTGTATCTAGGCCGTGGCAAAATAGGGCATACATACTGACTTATCGACACAGTCTCA
1 ACACGCCCGTGTATCTAGGCCGTGGCAAAATAGGACATACATACTGACTTATCGACACAGTCTCA
67619310 AG
66 AG
67619312 ACACGCCCGTGT
1 ACACGCCCGTGT
67619324 GGCGGCCCAT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (67 bp):
ACACGCCCGTGTATCTAGGCCGTGGCAAAATAGGACATACATACTGACTTATCGACACAGTCTCA
AG
Found at i:67620467 original size:23 final size:23
Alignment explanation
Indices: 67620436--67620590 Score: 126
Period size: 23 Copynumber: 6.8 Consensus size: 23
67620426 GCTGATGAAT
*
67620436 AGTAAGCTCTATTGAGCTGAAAC
1 AGTAAGCTCTATTAAGCTGAAAC
* *
67620459 GGTAAGCTCTATCAAGCTG-AAC
1 AGTAAGCTCTATTAAGCTGAAAC
* * *
67620481 AGTAAGCTC-ATACAAGTTGGAAC
1 AGTAAGCTCTAT-TAAGCTGAAAC
*
67620504 -GATAAGCTCTATTGAGCT-AAAC
1 AG-TAAGCTCTATTAAGCTGAAAC
*
67620526 AATAAGCTCT-TTCAAGCT-AAATC
1 AGTAAGCTCTATT-AAGCTGAAA-C
* *
67620549 AGTAAGCTCCAATAAGCTGAAAC
1 AGTAAGCTCTATTAAGCTGAAAC
67620572 AGTAAGCTCT-TTCAAGCTG
1 AGTAAGCTCTATT-AAGCTG
67620591 TAGTGAGTCT
Statistics
Matches: 106, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
21 4 0.04
22 37 0.35
23 59 0.56
24 6 0.06
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCTATTAAGCTGAAAC
Found at i:67620578 original size:68 final size:68
Alignment explanation
Indices: 67620436--67620581 Score: 181
Period size: 68 Copynumber: 2.1 Consensus size: 68
67620426 GCTGATGAAT
** * * *
67620436 AGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTATCAAGCTGAACAGTAAGCTCATACAAGTTGG
1 AGTAAGCTCTATTGAGCTGAAACAATAAGCTCTATCAAGCTAAACAGTAAGCTCATACAAGCTGA
67620501 AAC
66 AAC
* *
67620504 -GATAAGCTCTATTGAGCT-AAACAATAAGCTCTTTCAAGCTAAATCAGTAAGCTCCA-ATAAGC
1 AG-TAAGCTCTATTGAGCTGAAACAATAAGCTCTATCAAGCTAAA-CAGTAAGCT-CATACAAGC
67620566 TGAAAC
63 TGAAAC
67620572 AGTAAGCTCT
1 AGTAAGCTCT
67620582 TTCAAGCTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
67 22 0.33
68 42 0.63
69 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (68 bp):
AGTAAGCTCTATTGAGCTGAAACAATAAGCTCTATCAAGCTAAACAGTAAGCTCATACAAGCTGA
AAC
Found at i:67623078 original size:18 final size:18
Alignment explanation
Indices: 67623055--67623090 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
67623045 TCTTCCGATT
67623055 CCCAGGTAGCTTACTTAA
1 CCCAGGTAGCTTACTTAA
*
67623073 CCCAGGTAGCTTCCTTAA
1 CCCAGGTAGCTTACTTAA
67623091 TTCTTTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (18 bp):
CCCAGGTAGCTTACTTAA
Found at i:67625543 original size:27 final size:27
Alignment explanation
Indices: 67625513--67625574 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
67625503 GACACAAGTA
*
67625513 TCTGCTTTTCTTTTTTCTTTGTTGAGT
1 TCTGCTTTTCTTTTTTCTTTGCTGAGT
67625540 TCTGCTTTTCTTTTTTCTTTGCTGAGT
1 TCTGCTTTTCTTTTTTCTTTGCTGAGT
*
67625567 TCTACTTT
1 TCTGCTTT
67625575 ATGTACTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.05, C:0.18, G:0.13, T:0.65
Consensus pattern (27 bp):
TCTGCTTTTCTTTTTTCTTTGCTGAGT
Found at i:67627673 original size:39 final size:39
Alignment explanation
Indices: 67627630--67627743 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
67627620 CAGTGATGTT
* * *
67627630 TATCCGGACTTAGGGTCCGCATGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTA
*
67627669 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTA
* * *
67627708 TAACCGGACTTAAGGTCTACAAGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAA
67627744 ATATGTCTAG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTA
Found at i:67637743 original size:40 final size:40
Alignment explanation
Indices: 67637698--67637827 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67637688 CGGAATACAA
67637698 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
67637738 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
67637778 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
67637818 CCGGATATAA
1 CCGGATATAA
67637828 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:67640200 original size:24 final size:24
Alignment explanation
Indices: 67640118--67640200 Score: 123
Period size: 24 Copynumber: 3.5 Consensus size: 24
67640108 AAATGAATGC
67640118 AAGCCCTTTT-AGTAACTGGGGCAT
1 AAGCCCTTTTGA-TAACTGGGGCAT
* * *
67640142 AAGCCTTTTTTATAACTAGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
67640166 AAGCCCTTTTGATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
67640190 AAGCCCTTTTG
1 AAGCCCTTTTG
67640201 CACTTCCTCC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
24 52 0.98
25 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
AAGCCCTTTTGATAACTGGGGCAT
Found at i:67640315 original size:20 final size:20
Alignment explanation
Indices: 67640249--67640306 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
67640239 TTATGAATAC
67640249 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67640269 ATCATGTGCATATAATACAT
1 ATCATGTGCATATCATACAT
*
67640289 GTCATGTGCATATCATAC
1 ATCATGTGCATATCATAC
67640307 GTACCATGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67640384 original size:25 final size:25
Alignment explanation
Indices: 67640352--67640399 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67640342 ATATATAAAC
* * *
67640352 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
67640377 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
67640400 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:67644471 original size:39 final size:39
Alignment explanation
Indices: 67644417--67644530 Score: 138
Period size: 39 Copynumber: 2.9 Consensus size: 39
67644407 CAGTGATGTT
* *
67644417 TATCCTGACTTAAGGTCCACGGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
*
67644456 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
* * * ** * *
67644495 AAACCGAACTTAAGGTCTGCAAGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAA
67644531 ATATGTCTTG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
Found at i:67648183 original size:5 final size:5
Alignment explanation
Indices: 67648173--67648204 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
67648163 GATGCCAACC
67648173 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
67648205 TTAATTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:67650812 original size:17 final size:17
Alignment explanation
Indices: 67650782--67650835 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
67650772 AACCTTAAGT
*
67650782 TTTGAATTCCATAGCTA
1 TTTGAATACCATAGCTA
67650799 TTTG-ATACCTATAGCTA
1 TTTGAATACC-ATAGCTA
*
67650816 TTTGAATTCCATAGCTA
1 TTTGAATACCATAGCTA
67650833 TTT
1 TTT
67650836 TGTACAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 4 0.12
17 25 0.76
18 4 0.12
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (17 bp):
TTTGAATACCATAGCTA
Found at i:67650938 original size:5 final size:5
Alignment explanation
Indices: 67650928--67650954 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
67650918 GATGTCAACC
67650928 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
67650955 TTTATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:67655338 original size:34 final size:35
Alignment explanation
Indices: 67655287--67655390 Score: 92
Period size: 34 Copynumber: 3.1 Consensus size: 35
67655277 CAGTGTTGAA
* **
67655287 CAGTCTGGG-CTTAAGCCCATAT-CAATTGCAGTAT
1 CAGTGTGGGCCTT-AGCCCATATACAATAACAGTAT
* *
67655321 CAGTGTGGGCCTTAGCCCA-ATACAGTAATAGTAT
1 CAGTGTGGGCCTTAGCCCATATACAATAACAGTAT
* * *
67655355 TAGTGTGGGCCTTAGCCCAT-TTCAGT-ACAGTAT
1 CAGTGTGGGCCTTAGCCCATATACAATAACAGTAT
67655388 CAG
1 CAG
67655391 AAATGCATAC
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
33 10 0.17
34 45 0.78
35 3 0.05
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (35 bp):
CAGTGTGGGCCTTAGCCCATATACAATAACAGTAT
Found at i:67665790 original size:13 final size:15
Alignment explanation
Indices: 67665761--67665792 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
67665751 GAGAAAGGCT
67665761 GATTCAGAGGCAAGA
1 GATTCAGAGGCAAGA
67665776 GATTC-GAGG-AAGA
1 GATTCAGAGGCAAGA
67665789 GATT
1 GATT
67665793 GATGAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.38, C:0.09, G:0.34, T:0.19
Consensus pattern (15 bp):
GATTCAGAGGCAAGA
Found at i:67670187 original size:46 final size:46
Alignment explanation
Indices: 67670137--67670265 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
67670127 TGTTTGGGCA
* *
67670137 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACG
67670183 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACG
* *
67670229 GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67670266 GCGGATTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACG
Found at i:67680863 original size:43 final size:43
Alignment explanation
Indices: 67680815--67681066 Score: 226
Period size: 43 Copynumber: 5.9 Consensus size: 43
67680805 GCAACACAAC
67680815 GCATCATC-GAATAAACCGAAGGAAAT-ATACTGGCACACATAGT
1 GCATCATCAG-ATAAACCGAA-GAAATCATACTGGCACACATAGT
* *
67680858 GCATCATCAGATAAACCGAAGTAATCATACTGACACACATAGT
1 GCATCATCAGATAAACCGAAGAAATCATACTGGCACACATAGT
* * * * * *
67680901 GCATCATCAAATTAACTGAAGCAATCATACTAGCAAACATAGT
1 GCATCATCAGATAAACCGAAGAAATCATACTGGCACACATAGT
* ** ** * *
67680944 GCTTCATC-GAATAAACTAAAGATTTCATACTGGCACGCAAAGT
1 GCATCATCAG-ATAAACCGAAGAAATCATACTGGCACACATAGT
** * *
67680987 GCATCATCAGATAAATTGAA-ACAATCATATTGGCACAAATAGT
1 GCATCATCAGATAAACCGAAGA-AATCATACTGGCACACATAGT
* * *
67681030 GCATCATTAGATAAACCTAGGGAAAT-ATACTGGCACA
1 GCATCATCAGATAAACCGA-AGAAATCATACTGGCACA
67681067 AAGGTGCTTA
Statistics
Matches: 167, Mismatches: 35, Indels: 14
0.77 0.16 0.06
Matches are distributed among these distances:
42 5 0.03
43 156 0.93
44 5 0.03
45 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (43 bp):
GCATCATCAGATAAACCGAAGAAATCATACTGGCACACATAGT
Found at i:67682111 original size:13 final size:13
Alignment explanation
Indices: 67682093--67682117 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67682083 ACTTTTAATT
67682093 AATTTTAATTAAC
1 AATTTTAATTAAC
67682106 AATTTTAATTAA
1 AATTTTAATTAA
67682118 GTTTTATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
AATTTTAATTAAC
Found at i:67684251 original size:15 final size:16
Alignment explanation
Indices: 67684233--67684262 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67684223 CAAATAACAG
67684233 AAATTAAAAT-TAATT
1 AAATTAAAATATAATT
67684248 AAATTAAAATATAAT
1 AAATTAAAATATAAT
67684263 AACTAAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATTAAAATATAATT
Found at i:67689079 original size:46 final size:46
Alignment explanation
Indices: 67688929--67689326 Score: 283
Period size: 46 Copynumber: 8.5 Consensus size: 46
67688919 TGGGTAAGGT
* **
67688929 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCATATCTCAA-
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTTACGTCTCAAG
** * * * *
67688976 GTTGATGACATGTTCCAGACACGGTCTTACACTGAC-TATCATCTC--G
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTTA-CGTCTCAAG
* * * *
67689022 TACACGGTGCATGTCCCAGACATGTTTTACACTGGCTTACATCTCAAG
1 -GC-CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAG
* * * * *
67689070 GCCGATGCATGTCCTAAACATGTCTTACACTAGCTCT-CGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCAAG
* * * *
67689116 GCCAATGCGATGTCCCAGACATGGTCTTACACTAGCATACGTCTCGAG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAG
* * * *
67689164 GCCAATGCAT-ACCCTAGACATGTCTTACACTTGCTCT-CGTCTCAAT
1 GCCGATGCATGTCCC-AGACATGTCTTACACTGGCT-TACGTCTCAAG
* * *
67689210 GTCGATGCCATGCCCCGGACATAGTCTTACACTGGCTTACGTCT-AGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCA-AG
* *
67689258 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCAAG
* *
67689304 GCCGATGCCATATCCCATACATG
1 GCCGATG-CATGTCCCAGACATG
67689327 GTGTGACATC
Statistics
Matches: 279, Mismatches: 50, Indels: 44
0.75 0.13 0.12
Matches are distributed among these distances:
46 112 0.40
47 107 0.38
48 60 0.22
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAG
Found at i:67689185 original size:94 final size:94
Alignment explanation
Indices: 67689031--67689328 Score: 384
Period size: 94 Copynumber: 3.2 Consensus size: 94
67689021 GTACACGGTG
* * * ** *
67689031 CATGTCCCAGACAT-GTTTTACACTGGCTTACATCTCAAGGCCGATGCATGTCCTAAACATGTCT
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATACCCTAGACATGTCT
* *
67689095 TACACTAGCTCTCGTCTTAATGCCAATGC
66 TACACTAGCTCTCGTCTCAATGCCGATGC
* * * *
67689124 GATGTCCCAGACATGGTCTTACACTAGCATACGTCTCGAGGCCAATGCATACCCTAGACATGTCT
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATACCCTAGACATGTCT
* *
67689189 TACACTTGCTCTCGTCTCAATGTCGATGC
66 TACACTAGCTCTCGTCTCAATGCCGATGC
* * * * *
67689218 CATGCCCCGGACATAGTCTTACACTGGCTTACGTCTAGAGGCCGATGCATGTCCC-AGACATGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATGCAT-ACCCTAGACATGTC
67689282 TTACACTAGCTCTCGTCTCAATGCCGATGC
65 TTACACTAGCTCTCGTCTCAATGCCGATGC
* *
67689312 CATATCCCATACATGGT
1 CATGTCCCAGACATGGT
67689329 GTGACATCCC
Statistics
Matches: 173, Mismatches: 30, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
93 13 0.08
94 157 0.91
95 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATACCCTAGACATGTCT
TACACTAGCTCTCGTCTCAATGCCGATGC
Found at i:67691248 original size:40 final size:40
Alignment explanation
Indices: 67691121--67691250 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67691111 ATGCTGGAAA
* * *
67691121 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
67691161 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
67691201 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
67691241 TTATATCCGG
1 TTATATCCGG
67691251 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:67699373 original size:40 final size:40
Alignment explanation
Indices: 67699246--67699375 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67699236 TTGCTGGAAA
* * *
67699246 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
67699286 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
67699326 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
67699366 TTATATCCGG
1 TTATATCCGG
67699376 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:67702234 original size:45 final size:44
Alignment explanation
Indices: 67702185--67702771 Score: 172
Period size: 44 Copynumber: 13.0 Consensus size: 44
67702175 AGAGGTATTG
* * * *
67702185 GATTAGTTCGCTTTAATCTGCTCCATTACAATTTCAGGGAGATAA
1 GATTAG-TAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
*
67702230 GATTAGTAGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAAA
1 GATTAGTAGCTTTAATCTACTCCACTACAACTTCAGGGAGAT--AA
* * * *** * * *
67702276 TTTGCTATCTTGTAGCTTTAATTTGCTCTGTTGCAACTTCAAGGAGATGA
1 ---G--AT-TAGTAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
* * * * * * * *
67702326 GATTTGCTA--TTTCCAGTCTGCTCCACTGCAACTTCAAGAAGGTGA
1 GATTAG-TAGCTTT--AATCTACTCCACTACAACTTCAGGGAGATAA
* * *
67702371 GACTTA-TAGCTTTAATCTACTCTATTGCAACTTCAGGGAGATAA
1 GA-TTAGTAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
* *
67702415 GATT--T-GCTATACAAGATCTACTCCACTGCAACTTCAGGGAGATAA
1 GATTAGTAGCT-T--TA-ATCTACTCCACTACAACTTCAGGGAGATAA
* * * * * * * ***
67702460 AATCTA-TAACTTCAACCTACTCTATTGCAACTTCAAACAGATAA
1 GAT-TAGTAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
* * ** * **
67702504 GGTTTA-TAGCTTTAATCTACTCTACTGTAACTTTAGATAGATAA
1 -GATTAGTAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
** * ** * *
67702548 GATTTTCTATC-TTATATCTACTCCACTGTAGCTTTAGGGAGATAA
1 GA-TTAGTAGCTTTA-ATCTACTCCACTACAACTTCAGGGAGATAA
* * * * * *
67702593 GATCTA-TAACTTTAATCTGCTCTACTGCAACTTCAGAGACATAA
1 GAT-TAGTAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
* * * ** * * * *
67702637 GGTTTGTAGCTTTAATC-ACATCTACTGTAACTTTAGAGAAATAC
1 GATTAGTAGCTTTAATCTAC-TCCACTACAACTTCAGGGAGATAA
* * ** * *
67702681 GATTTGCTATCTTCGATCTACTCCACTGCAACTTTAGGGAGATAA
1 GATTAG-TAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
* * * * *
67702726 GATCTA-TAACTTCAGTCTGCTCCACTACAAGTTCAGGGAGATAA
1 GAT-TAGTAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
67702770 GA
1 GA
67702772 CTTACCACAA
Statistics
Matches: 418, Mismatches: 92, Indels: 65
0.73 0.16 0.11
Matches are distributed among these distances:
41 3 0.01
42 2 0.00
43 8 0.02
44 220 0.53
45 133 0.32
46 11 0.03
47 3 0.01
48 2 0.00
49 1 0.00
50 1 0.00
51 2 0.00
52 32 0.08
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
GATTAGTAGCTTTAATCTACTCCACTACAACTTCAGGGAGATAA
Found at i:67702439 original size:89 final size:89
Alignment explanation
Indices: 67702288--67702504 Score: 240
Period size: 89 Copynumber: 2.4 Consensus size: 89
67702278 TGCTATCTTG
* * * * * * *
67702288 TAGCTTTAATTTGCTCTGTTGCAACTTCAAGGAGATGAGATTTGCTATTTCCAGTCTGCTCCACT
1 TAGCTTTAATCTACTCTATTGCAACTTCAAGGAGATAAGATTTGCTATTACAAGTCTACTCCACT
* * *
67702353 GCAACTTCAAGAAGGTGAGA-CTTA
66 GCAACTTCAAGAAGATAAAATC-TA
*
67702377 TAGCTTTAATCTACTCTATTGCAACTTCAGGGAGATAAGATTTGCTA-TACAAGATCTACTCCAC
1 TAGCTTTAATCTACTCTATTGCAACTTCAAGGAGATAAGATTTGCTATTACAAG-TCTACTCCAC
* *
67702441 TGCAACTTCAGGGAGATAAAATCTA
65 TGCAACTTCAAGAAGATAAAATCTA
* * * **
67702466 TAACTTCAACCTACTCTATTGCAACTTCAAACAGATAAG
1 TAGCTTTAATCTACTCTATTGCAACTTCAAGGAGATAAG
67702505 GTTTATAGCT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
88 4 0.04
89 102 0.95
90 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (89 bp):
TAGCTTTAATCTACTCTATTGCAACTTCAAGGAGATAAGATTTGCTATTACAAGTCTACTCCACT
GCAACTTCAAGAAGATAAAATCTA
Found at i:67702745 original size:133 final size:133
Alignment explanation
Indices: 67702342--67702770 Score: 513
Period size: 133 Copynumber: 3.2 Consensus size: 133
67702332 CTATTTCCAG
* * * ** * * *
67702342 TCTGCTCCACTGCAACTTCA-AGAAGGTGAGACTTATAGCTTTAATCTACTCTATTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAG-AGATAAGGTTTATAGCTTTAATCTACTCTACTGTAACTTTA
* * * *
67702406 GGGAGATAAGATTTGCTATAC-AAGATCTACTCCACTGCAACTTCAGGGAGATAAAATCTATAAC
65 GAGAGATAAGATTTGCTAT-CTTAGATCTACTCCACTGCAACTTTAGGGAGATAAGATCTATAAC
67702470 TTCAA
129 TTCAA
* * * * *
67702475 CCTACTCTATTGCAACTTCAAACAGATAAGGTTTATAGCTTTAATCTACTCTACTGTAACTTTAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTATAGCTTTAATCTACTCTACTGTAACTTTAG
* * * * *
67702540 ATAGATAAGATTTTCTATCTTATATCTACTCCACTGTAGCTTTAGGGAGATAAGATCTATAACTT
66 AGAGATAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTTAGGGAGATAAGATCTATAACTT
*
67702605 TAA
131 CAA
* *
67702608 TCTGCTCTACTGCAACTTCAGAGACATAAGGTTTGTAGCTTTAATC-ACATCTACTGTAACTTTA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTATAGCTTTAATCTAC-TCTACTGTAACTTTA
* * *
67702672 GAGAAATACGATTTGCTATCTTCGATCTACTCCACTGCAACTTTAGGGAGATAAGATCTATAACT
65 GAGAGATAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTTAGGGAGATAAGATCTATAACT
*
67702737 TCAG
130 TCAA
* * * *
67702741 TCTGCTCCACTACAAGTTCAGGGAGATAAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAG
67702771 ACTTACCACA
Statistics
Matches: 249, Mismatches: 44, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
132 3 0.01
133 245 0.98
134 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.33
Consensus pattern (133 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTATAGCTTTAATCTACTCTACTGTAACTTTAG
AGAGATAAGATTTGCTATCTTAGATCTACTCCACTGCAACTTTAGGGAGATAAGATCTATAACTT
CAA
Found at i:67712171 original size:23 final size:23
Alignment explanation
Indices: 67712145--67712190 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
67712135 CATGTAATGT
67712145 AACATA-ATATCATACATGG-ATGC
1 AACATACATAT-A-ACATGGCATGC
67712168 AACATACATATAACATGGCATGC
1 AACATACATATAACATGGCATGC
67712191 TCAAATACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.29
23 11 0.52
24 4 0.19
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.24
Consensus pattern (23 bp):
AACATACATATAACATGGCATGC
Found at i:67712271 original size:27 final size:26
Alignment explanation
Indices: 67712225--67712341 Score: 128
Period size: 27 Copynumber: 4.3 Consensus size: 26
67712215 GAACAAATTT
* *
67712225 GTCATTTTACCT-TACCGGGGTATTACA
1 GTCATTTTACCTATA--GGGGTATTTCG
67712252 GTCATTTTATCCTATAGGGGTATTTCG
1 GTCATTTTA-CCTATAGGGGTATTTCG
*
67712279 GTCATTCTACCATATAGGGGTATTTCG
1 GTCATTTTACC-TATAGGGGTATTTCG
* * *
67712306 ATCATTTTACCCTATAAGGGCATTTCG
1 GTCATTTTA-CCTATAGGGGTATTTCG
67712333 GTCATTTTA
1 GTCATTTTA
67712342 TCACATAAGA
Statistics
Matches: 78, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.03
27 69 0.88
28 5 0.06
29 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTTCG
Found at i:67712364 original size:27 final size:28
Alignment explanation
Indices: 67712334--67712397 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 28
67712324 GGCATTTCGG
67712334 TCATTTTATCACATAAGAGAAAAATC-T
1 TCATTTTATCACATAAGAGAAAAATCAT
* * *
67712361 TCATTTTATCATATAAGGGCAAAATCAT
1 TCATTTTATCACATAAGAGAAAAATCAT
67712389 T-ATTTTATC
1 TCATTTTATC
67712398 GCAAAAAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 31 0.94
28 2 0.06
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (28 bp):
TCATTTTATCACATAAGAGAAAAATCAT
Found at i:67713762 original size:12 final size:11
Alignment explanation
Indices: 67713730--67713773 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
67713720 TTCCTCTTAA
67713730 AATCCCTCCTC
1 AATCCCTCCTC
*
67713741 ATATCTCTCCTC
1 A-ATCCCTCCTC
67713753 AACTCCCTCCTAC
1 AA-TCCCTCCT-C
67713766 AATCCCTC
1 AATCCCTC
67713774 AATGACCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
11 2 0.07
12 23 0.82
13 3 0.11
ACGTcount: A:0.20, C:0.50, G:0.00, T:0.30
Consensus pattern (11 bp):
AATCCCTCCTC
Found at i:67714712 original size:20 final size:23
Alignment explanation
Indices: 67714679--67714719 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
67714669 AAACCAAAAT
67714679 GATGAAGATCGCAAC-AAAGATA
1 GATGAAGATCGCAACGAAAGATA
67714701 GATGAA-AT-GCAACGAAAGA
1 GATGAAGATCGCAACGAAAGA
67714720 ATCGTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 7 0.39
22 6 0.33
ACGTcount: A:0.51, C:0.12, G:0.24, T:0.12
Consensus pattern (23 bp):
GATGAAGATCGCAACGAAAGATA
Found at i:67715641 original size:18 final size:17
Alignment explanation
Indices: 67715618--67715654 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
67715608 TAACAAGAAT
67715618 AAAAGACAAAATAATAAA
1 AAAAGA-AAAATAATAAA
*
67715636 AAAAGATAAATAATAAA
1 AAAAGAAAAATAATAAA
67715653 AA
1 AA
67715655 GAAATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.14
Consensus pattern (17 bp):
AAAAGAAAAATAATAAA
Found at i:67715644 original size:13 final size:13
Alignment explanation
Indices: 67715628--67715666 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
67715618 AAAAGACAAA
67715628 ATAATAAAAAAAG
1 ATAATAAAAAAAG
67715641 ATAAATAATAAAAAG
1 AT-AATAA-AAAAAG
67715656 A-AATAAAAAAA
1 ATAATAAAAAAA
67715667 CAAACCAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 5 0.21
15 7 0.29
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (13 bp):
ATAATAAAAAAAG
Found at i:67715737 original size:8 final size:8
Alignment explanation
Indices: 67715725--67715821 Score: 56
Period size: 9 Copynumber: 11.4 Consensus size: 8
67715715 AAAAAAGTTG
67715725 AAAATAAT
1 AAAATAAT
*
67715733 CAAATAAAT
1 AAAAT-AAT
67715742 AAAATAAT
1 AAAATAAT
67715750 AAAGA-AAT
1 AAA-ATAAT
67715758 ATTAAATAA-
1 A--AAATAAT
*
67715767 AACAATTA-
1 AA-AATAAT
*
67715775 AAAATGAT
1 AAAATAAT
67715783 AATAATAAT
1 AA-AATAAT
67715792 AATAATAAT
1 AA-AATAAT
*
67715801 AATAGTAAT
1 AA-AATAAT
67715810 AATAATAAT
1 AA-AATAAT
67715819 AAA
1 AAA
67715822 TAAGTAGATA
Statistics
Matches: 74, Mismatches: 7, Indels: 16
0.76 0.07 0.16
Matches are distributed among these distances:
7 5 0.07
8 23 0.31
9 42 0.57
10 4 0.05
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (8 bp):
AAAATAAT
Found at i:67715750 original size:12 final size:12
Alignment explanation
Indices: 67715735--67715838 Score: 60
Period size: 12 Copynumber: 8.9 Consensus size: 12
67715725 AAAATAATCA
67715735 AATAAATAAAAT
1 AATAAATAAAAT
*
67715747 AATAAA-GAAAT
1 AATAAATAAAAT
* *
67715758 ATTAAATAAAAC
1 AATAAATAAAAT
*
67715770 AAT-TA-AAAAT
1 AATAAATAAAAT
*
67715780 GAT-AATAATAAT
1 AATAAATAA-AAT
67715792 AAT-AATAATAAT
1 AATAAATAA-AAT
*
67715804 AGT-AATAATAAT
1 AATAAATAA-AAT
*
67715816 AATAAAT-AAGT
1 AATAAATAAAAT
67715827 AGATAAATAAAA
1 A-ATAAATAAAA
67715839 CACATATACA
Statistics
Matches: 72, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
10 7 0.10
11 15 0.21
12 45 0.62
13 5 0.07
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.27
Consensus pattern (12 bp):
AATAAATAAAAT
Found at i:67715789 original size:3 final size:3
Alignment explanation
Indices: 67715781--67715820 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
67715771 ATTAAAAATG
*
67715781 ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
67715821 ATAAGTAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67715959 original size:15 final size:17
Alignment explanation
Indices: 67715918--67715957 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
67715908 AAAATTAGGT
**
67715918 ATTAAAAATGGATATAA
1 ATTAAAAATTTATATAA
67715935 ATTAAAAATTTATAT-A
1 ATTAAAAATTTATATAA
67715951 ATTAAAA
1 ATTAAAA
67715958 TTAAGAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (17 bp):
ATTAAAAATTTATATAA
Found at i:67719435 original size:23 final size:21
Alignment explanation
Indices: 67719405--67719452 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
67719395 TTATCATCAC
*
67719405 AAATATATATATTAAAATTATAA
1 AAATATAT-TATT-AAATAATAA
*
67719428 AAATATATTATTTAATAATAA
1 AAATATATTATTAAATAATAA
67719449 AAAT
1 AAAT
67719453 TGTATAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 11 0.48
22 4 0.17
23 8 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATATATTATTAAATAATAA
Found at i:67723832 original size:29 final size:29
Alignment explanation
Indices: 67723799--67723901 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
67723789 GGGACGAGAT
* *
67723799 TGGCACTGAA-TGTGCGAGCTTGTAATGTA
1 TGGCACT-AAGTGTGCGAGCTTGGAATATA
* *
67723828 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
67723857 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
67723886 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67723902 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 5 0.08
29 57 0.92
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:67743000 original size:45 final size:46
Alignment explanation
Indices: 67742904--67743000 Score: 144
Period size: 45 Copynumber: 2.1 Consensus size: 46
67742894 GCTTAAGATA
*
67742904 GAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCC
1 GAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGCC
*
67742951 GAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGCC
1 GAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGCC
67742996 GAATG
1 GAATG
67743001 ACTAATTGTG
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
45 23 0.49
46 1 0.02
47 23 0.49
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (46 bp):
GAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGCC
Found at i:67746725 original size:79 final size:81
Alignment explanation
Indices: 67746616--67746798 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
67746606 TACTCGTTCA
* *
67746616 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
67746679 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
67746696 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCAGAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
67746759 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
67746775 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
67746799 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:67746798 original size:40 final size:40
Alignment explanation
Indices: 67746595--67746798 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
67746585 CGGAATTTAA
** *
67746595 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67746635 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67746675 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67746714 CCGGA-ATTAGTAACTCGCAGAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
67746754 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67746794 CCGGA
1 CCGGA
67746799 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 94 0.68
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67748899 original size:40 final size:40
Alignment explanation
Indices: 67748844--67749079 Score: 400
Period size: 40 Copynumber: 5.9 Consensus size: 40
67748834 CTCGCCGATG
* *
67748844 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
67748884 ATCCGGGCTAAGTCCCGAAAAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
67748924 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
67748964 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
67749004 ATCCGGGCTAAGTCCCGAATAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
67749044 ATCCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
67749080 ATGTGTATTC
Statistics
Matches: 184, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 184 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:67749289 original size:25 final size:25
Alignment explanation
Indices: 67749239--67749289 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
67749229 TGTGTAACAA
* *
67749239 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
67749264 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
67749289 C
1 C
67749290 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:67750538 original size:4 final size:4
Alignment explanation
Indices: 67750529--67750553 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
67750519 ATTATATGAC
67750529 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
67750554 AAGGAAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:67752971 original size:47 final size:44
Alignment explanation
Indices: 67752901--67753008 Score: 137
Period size: 47 Copynumber: 2.4 Consensus size: 44
67752891 AGCTTAAGAT
*
67752901 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGG
1 CGAATGGCCAATGTGATGAATGTGAAA--GTGAATATGTGATAAGG
*
67752947 CCGAATGGCCAATGTGAT-ATATGTGTAAGTGAATATGTGATAAGG
1 -CGAATGGCCAATGTGATGA-ATGTGAAAGTGAATATGTGATAAGG
*
67752992 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
67753009 AAAGTGTGCA
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
44 10 0.18
45 21 0.38
46 1 0.02
47 24 0.43
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (44 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGAATATGTGATAAGG
Found at i:67753134 original size:39 final size:40
Alignment explanation
Indices: 67753079--67753163 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
67753069 AAATGAATTG
* * * *
67753079 TGCTGAGATTGCATCCGGG-TTATAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
67753118 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
67753158 TGCTGG
1 TGCTGG
67753164 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.31, T:0.29
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:67758522 original size:48 final size:48
Alignment explanation
Indices: 67758457--67758703 Score: 422
Period size: 48 Copynumber: 5.1 Consensus size: 48
67758447 GCTGAAATTG
*
67758457 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
67758505 ATGTATGAGATATGTATATGTGGGAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
67758553 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATTT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA--T
*
67758603 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
67758651 ATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
67758699 ATGTA
1 ATGTA
67758704 GGTGATGTGT
Statistics
Matches: 188, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
48 142 0.76
50 46 0.24
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:67758719 original size:98 final size:96
Alignment explanation
Indices: 67758457--67758703 Score: 422
Period size: 98 Copynumber: 2.6 Consensus size: 96
67758447 GCTGAAATTG
*
67758457 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
67758522 ATGTGGGAAAGCCGAATGGCTAATGTGAAAT
66 ATGTGGGAAAGCCGAATGGCTAATGTGAAAT
* *
67758553 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATTTATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA--TATGTATGAGATATGT
*
67758618 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
64 ATATGTGGGAAAGCCGAATGGCTAATGTGAAAT
* *
67758651 ATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
67758704 GGTGATGTGT
Statistics
Matches: 141, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
96 50 0.35
98 91 0.65
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (96 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
ATGTGGGAAAGCCGAATGGCTAATGTGAAAT
Found at i:67758954 original size:37 final size:37
Alignment explanation
Indices: 67758850--67758958 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
67758840 GGAAATATAT
* *
67758850 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
67758887 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
67758924 TCCGGGTAAGACCCGATAACTTCGTATGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
67758959 CATCTGAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:67760192 original size:47 final size:49
Alignment explanation
Indices: 67760118--67760381 Score: 212
Period size: 47 Copynumber: 5.6 Consensus size: 49
67760108 GGTAAGGTGT
* *
67760118 CGATGCCATGTCCCAGACATGGCCTTACACTGGCTCAT-ATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* * *
67760165 TGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
* * * * * *
67760213 CAATG-AATGTCCCAAACAT-GTCTTACACTGGCTTA-CGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
** * *
67760259 CGATG-CATGTCCCAGACAT-GTCTTACACTAACTC-TCGTCTC-AATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAA-GC
* * * *** **
67760305 TGATACCATGTCCCAGACATGGTATTACACTGGCTC-TCATAAGGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
*
67760353 CGATG-CATGTCCCAGACAT-GTCTCACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
67760382 AGCTTACACA
Statistics
Matches: 172, Mismatches: 37, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 69 0.40
47 78 0.45
48 24 0.14
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCGAAGC
Found at i:67760254 original size:46 final size:46
Alignment explanation
Indices: 67760172--67760287 Score: 146
Period size: 46 Copynumber: 2.5 Consensus size: 46
67760162 AGTTGATGCC
67760172 ATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-GCCAATGA
1 ATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AGGCCAATGA
* * * * *
67760219 ATGTCCCAAACATGTCTTACACTGGCT-TACGTCTCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAGGCCAATGA
67760265 ATGTCCCAGACATGTCTTACACT
1 ATGTCCCAGACATGTCTTACACT
67760288 AACTCTCGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 2 0.03
46 47 0.77
47 12 0.20
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGGCCAATGA
Found at i:67760381 original size:140 final size:141
Alignment explanation
Indices: 67760118--67760388 Score: 350
Period size: 140 Copynumber: 1.9 Consensus size: 141
67760108 GGTAAGGTGT
** *
67760118 CGATGCCATGTCCCAGACATGGCCTTACACTGGCTCATATCTCAAGTTGATGCCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGCCTTACACTAACTCATATCTCAAGTTGATACCATGTCCCAGAC
* ** * *
67760183 ATGGTCTTACACTGACTATCATCTCGTAGCCAATGAATGTCCCAAACATGTCTTACACTGGCTTA
66 ATGGTATTACACTGACTATCATAACGTAGCCAATGAATGTCCCAAACATGTCTCACACTAGCTTA
67760248 CGTCTCGAGGC
131 CGTCTCGAGGC
* *
67760259 CGATG-CATGTCCCAGACAT-GTCTTACACTAACTC-TCGTCTCAATGTTGATACCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGCCTTACACTAACTCAT-ATCTCAA-GTTGATACCATGTCCCAG
* * * * * * *
67760321 ACATGGTATTACACTGGCTCTCATAAGGTGGCCGATGCATGTCCCAGACATGTCTCACACTAGCT
64 ACATGGTATTACACTGACTATCATAACGTAGCCAATGAATGTCCCAAACATGTCTCACACTAGCT
67760386 TAC
129 TAC
67760389 ACACAAATGA
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
138 1 0.01
139 18 0.16
140 87 0.78
141 5 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGCCTTACACTAACTCATATCTCAAGTTGATACCATGTCCCAGAC
ATGGTATTACACTGACTATCATAACGTAGCCAATGAATGTCCCAAACATGTCTCACACTAGCTTA
CGTCTCGAGGC
Found at i:67763639 original size:30 final size:30
Alignment explanation
Indices: 67763605--67763667 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
67763595 CTATGTCTAT
67763605 GAAAGCAGTGTAAGGTACATCAAAAATTAA
1 GAAAGCAGTGTAAGGTACATCAAAAATTAA
*
67763635 GAAAGTAGTGTAAGGTACATCAAAAATTAA
1 GAAAGCAGTGTAAGGTACATCAAAAATTAA
67763665 GAA
1 GAA
67763668 CATTCCAGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.51, C:0.08, G:0.21, T:0.21
Consensus pattern (30 bp):
GAAAGCAGTGTAAGGTACATCAAAAATTAA
Found at i:67773891 original size:47 final size:47
Alignment explanation
Indices: 67773813--67774271 Score: 688
Period size: 47 Copynumber: 9.8 Consensus size: 47
67773803 CCCTTCGGAA
* * * * *
67773813 CTTATCACATTTATACACTTTCACATCCATCACGTCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67773860 CCTACCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
67773907 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
67773954 CTTATCACATATATACGCTTCCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67774001 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67774048 CTTATCACATATATACACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67774095 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67774142 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
67774189 CTTATCACACATATGCA-TGTTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
67774236 CTTATCACATATATGCA-TGTTCACATTCATCACATT
1 CTTATCACATATATACACT-TTCACATTCATCACATT
67774272 AAATCCTAAA
Statistics
Matches: 378, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
46 1 0.00
47 377 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:67776800 original size:22 final size:20
Alignment explanation
Indices: 67776760--67776800 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
67776750 AGTCCTATTA
*
67776760 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
67776780 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
67776801 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:67777547 original size:40 final size:40
Alignment explanation
Indices: 67777492--67777695 Score: 313
Period size: 40 Copynumber: 5.1 Consensus size: 40
67777482 CAGATGATAA
* *
67777492 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
67777532 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
67777572 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
67777612 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
67777652 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67777692 CCGG
1 CCGG
67777696 TTAAAGTCCG
Statistics
Matches: 154, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 153 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67780775 original size:77 final size:77
Alignment explanation
Indices: 67780634--67780788 Score: 186
Period size: 77 Copynumber: 2.0 Consensus size: 77
67780624 TGAATATTTC
* * * *
67780634 AAATCCTAAGGTTACGTTTTTAGGCTCCCCACAAGATTGATGGTCAGTAGAGCAATAATCTTGGA
1 AAATCCTAAGATTACGTTATTA-G-TCCCCACAAGATTGATGGTCAGTAGAGCAACAATATTGGA
67780699 TTGATGATGACAAA
64 TTGATGATGACAAA
* ** * *
67780713 AAATCCTAAGATTACGTTATTA-TGCCCAGCAAGATTGATGGTTTGTAGAGTAGCAATATTGGAT
1 AAATCCTAAGATTACGTTATTAGTCCCCA-CAAGATTGATGGTCAGTAGAGCAACAATATTGGAT
*
67780777 TGATGATTACAA
65 TGATGATGACAA
67780789 TAAACGTGCG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
76 5 0.08
77 40 0.62
79 20 0.31
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (77 bp):
AAATCCTAAGATTACGTTATTAGTCCCCACAAGATTGATGGTCAGTAGAGCAACAATATTGGATT
GATGATGACAAA
Found at i:67784858 original size:26 final size:26
Alignment explanation
Indices: 67784820--67784877 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
67784810 CAATATAACT
* *
67784820 AAATTTATAATTTTAGAT-TCTTTTTA
1 AAATTTAGAATTTT-GATGTATTTTTA
* *
67784846 AAATTTAGCATTTTTATGTATTTTTA
1 AAATTTAGAATTTTGATGTATTTTTA
67784872 AAATTT
1 AAATTT
67784878 TATATAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.57
Consensus pattern (26 bp):
AAATTTAGAATTTTGATGTATTTTTA
Found at i:67785093 original size:22 final size:22
Alignment explanation
Indices: 67785068--67785112 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
67785058 GAGTAGTTGA
67785068 ACTCGTTGAATAAATTTATTTT
1 ACTCGTTGAATAAATTTATTTT
67785090 ACTCGTTGAATAAATTTATTTT
1 ACTCGTTGAATAAATTTATTTT
67785112 A
1 A
67785113 TTCTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.49
Consensus pattern (22 bp):
ACTCGTTGAATAAATTTATTTT
Found at i:67795398 original size:93 final size:93
Alignment explanation
Indices: 67795286--67795457 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67795276 GCCCATAAGT
* *
67795286 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67795351 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67795379 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67795444 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67795458 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67795453 original size:46 final size:46
Alignment explanation
Indices: 67795278--67795453 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67795268 TGTAACCCGC
* * *
67795278 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67795324 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67795374 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67795417 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67795454 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67797871 original size:29 final size:29
Alignment explanation
Indices: 67797832--67797919 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
67797822 CAAAGATAAC
*
67797832 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
67797861 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
67797890 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
67797920 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:67797890 original size:15 final size:15
Alignment explanation
Indices: 67797832--67797910 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
67797822 CAAAGATAAC
*
67797832 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67797846 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67797861 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
67797875 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67797890 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67797905 AAGAAA
1 AAGAAA
67797911 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67797919 original size:15 final size:15
Alignment explanation
Indices: 67797843--67797919 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
67797833 AGAAAACCGA
67797843 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
67797858 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
67797872 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
67797886 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67797902 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67797917 ATA
1 ATA
67797920 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67800978 original size:93 final size:93
Alignment explanation
Indices: 67800866--67801037 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67800856 GCCCATAAGT
* *
67800866 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67800931 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67800959 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67801024 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67801038 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67801033 original size:46 final size:46
Alignment explanation
Indices: 67800858--67801033 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67800848 TGTAACCCGC
* * *
67800858 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67800904 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67800954 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67800997 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67801034 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67805868 original size:28 final size:27
Alignment explanation
Indices: 67805792--67805869 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 27
67805782 GCCATAAGCC
* *
67805792 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTT-ATAATCAAACT
67805820 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCT-TATAATCAAACT
*
67805848 TGCACACTTAGTGCTGTATAAT
1 CGCACACTTAGTGCT-TATAAT
67805870 TTGAACCCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:67808551 original size:42 final size:42
Alignment explanation
Indices: 67808500--67808584 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
67808490 CACGGGCATG
67808500 TGTACTGTCTCTATACGGGCGTGTGAGGCATTAACCAAAAAA
1 TGTACTGTCTCTATACGGGCGTGTGAGGCATTAACCAAAAAA
67808542 TGTACTGTCTCTATACGGGCGTGTGAGGCATTAACCAAAAAA
1 TGTACTGTCTCTATACGGGCGTGTGAGGCATTAACCAAAAAA
67808584 T
1 T
67808585 TTTCTTAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (42 bp):
TGTACTGTCTCTATACGGGCGTGTGAGGCATTAACCAAAAAA
Found at i:67809479 original size:17 final size:17
Alignment explanation
Indices: 67809429--67809481 Score: 79
Period size: 17 Copynumber: 3.1 Consensus size: 17
67809419 TTTCCCAAAG
*
67809429 TAATAATGTAATATTAG
1 TAATAATGTAATATTAA
*
67809446 TAATAATATAATATTAA
1 TAATAATGTAATATTAA
*
67809463 TAATAACGTAATATTAA
1 TAATAATGTAATATTAA
67809480 TA
1 TA
67809482 GAGAAAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.40
Consensus pattern (17 bp):
TAATAATGTAATATTAA
Found at i:67810039 original size:96 final size:96
Alignment explanation
Indices: 67809807--67810297 Score: 657
Period size: 96 Copynumber: 5.2 Consensus size: 96
67809797 ATTTATGCTG
* * * * *
67809807 TTGTACTATTATATTAATTTATGCTTCAATTAACTAACTTTAAAGTTTAAACTGTGGTTTAGCAG
1 TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTGTAGTTTAACAT
** * *
67809872 ACTTTTCTTTT-TTTGCTTAAT-TT-ATGCTA-
66 ACTTTT-TTTTGTTTAATTTATGTTGTTG-TAC
* * *
67809901 TTATACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTATATTTTAACAT
1 TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTGTAGTTTAACAT
67809966 ACTTTTTTTTGTTTAATTTATGTTGTTGTAC
66 ACTTTTTTTTGTTTAATTTATGTTGTTGTAC
* * *
67809997 TTGTACTATTATATTAATTTAGGCTTCAATTAACTAATTTTAAAATTTAAACTATATTTTAACAT
1 TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTGTAGTTTAACAT
67810062 ACTTTTTTTTGTTTAATTTATGTTGTTGTAC
66 ACTTTTTTTTGTTTAATTTATGTTGTTGTAC
* *
67810093 TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTGTAGCTTAACAG
1 TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTGTAGTTTAACAT
*
67810158 ACTTTTTTTTTGTTTAATTTA---TG--ATA-
66 AC-TTTTTTTTGTTTAATTTATGTTGTTGTAC
* * * *
67810184 TTGTACTATTATATTAATTTAGGCTTTAATTAACTAACTTTGAAGTTTAAAATGTAGTTTAACAT
1 TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTGTAGTTTAACAT
67810249 ACTTTTTTTTGTTTAATTTATGTTGTTGTAC
66 ACTTTTTTTTGTTTAATTTATGTTGTTGTAC
67810280 TCT-TA-TATTA-ATTAATTT
1 T-TGTACTATTATATTAATTT
67810298 TTAATTTAAC
Statistics
Matches: 358, Mismatches: 27, Indels: 24
0.88 0.07 0.06
Matches are distributed among these distances:
90 18 0.05
91 61 0.17
92 2 0.01
93 6 0.02
94 80 0.22
95 11 0.03
96 161 0.45
97 19 0.05
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.52
Consensus pattern (96 bp):
TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTGTAGTTTAACAT
ACTTTTTTTTGTTTAATTTATGTTGTTGTAC
Found at i:67810264 original size:187 final size:185
Alignment explanation
Indices: 67809794--67810297 Score: 660
Period size: 187 Copynumber: 2.7 Consensus size: 185
67809784 CTTCAATTAA
* * *
67809794 TTAATTTATGCTGTTGTACTATTATATTAATTTATGCTTCAATTAACTAACTTTAAAGTTTAAAC
1 TTAATTTATGATATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
* * * ** * *
67809859 TGTGGTTTAGCAGACTTTTCTTTT-TTTGCTTAAT-TT-ATGCTA-TTATACTATTATATTAATT
66 TGTAGTTTAACATACTTTT-TTTTGTTTAATTTATGTTGTTG-TACTT-TACTATTATATTAATT
** *
67809920 TAGGCTTCAATTAACTAACTTTAAAATTTAAACTATATTTTAACATACTTTTTTTTGT
128 TAGGCTTCAATTAACTAACTTTAAAATTTAAACTATAGCTTAACAGACTTTTTTTTGT
* * *
67809978 TTAATTTATGTTGTTGTACTTGTACTATTATATTAATTTAGGCTTCAATTAACTAATTTTAAAAT
1 TTAATTTA---TG--ATA-TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGT
* *
67810043 TTAAACTATATTTTAACATACTTTTTTTTGTTTAATTTATGTTGTTGTACTTGTACTATTATATT
60 TTAAACTGTAGTTTAACATACTTTTTTTTGTTTAATTTATGTTGTTGTACTT-TACTATTATATT
*
67810108 AATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTGTAGCTTAACAGACTTTTTTTTTGT
124 AATTTAGGCTTCAATTAACTAACTTTAAAATTTAAACTATAGCTTAACAGAC-TTTTTTTTGT
* * *
67810171 TTAATTTATGATATTGTACTATTATATTAATTTAGGCTTTAATTAACTAACTTTGAAGTTTAAAA
1 TTAATTTATGATATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
67810236 TGTAGTTTAACATACTTTTTTTTGTTTAATTTATGTTGTTGTACTCTTA-TATTA-ATTAATTT
66 TGTAGTTTAACATACTTTTTTTTGTTTAATTTATGTTGTTGTACT-TTACTATTATATTAATTT
67810298 TTAATTTAAC
Statistics
Matches: 281, Mismatches: 27, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
184 8 0.03
185 8 0.03
186 5 0.02
187 94 0.33
188 3 0.01
189 5 0.02
190 72 0.26
191 4 0.01
192 64 0.23
193 18 0.06
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.52
Consensus pattern (185 bp):
TTAATTTATGATATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAC
TGTAGTTTAACATACTTTTTTTTGTTTAATTTATGTTGTTGTACTTTACTATTATATTAATTTAG
GCTTCAATTAACTAACTTTAAAATTTAAACTATAGCTTAACAGACTTTTTTTTGT
Found at i:67812779 original size:40 final size:40
Alignment explanation
Indices: 67812748--67812962 Score: 377
Period size: 40 Copynumber: 5.5 Consensus size: 40
67812738 CGCTCGAATA
*
67812748 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
67812788 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
67812828 CC-TC-GGACTTAG-CCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
67812865 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
67812904 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
67812944 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67812963 TTATCATCCA
Statistics
Matches: 169, Mismatches: 1, Indels: 10
0.94 0.01 0.06
Matches are distributed among these distances:
37 27 0.16
38 10 0.06
39 50 0.30
40 82 0.49
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:67812928 original size:116 final size:119
Alignment explanation
Indices: 67812709--67812959 Score: 395
Period size: 116 Copynumber: 2.1 Consensus size: 119
67812699 AAGCCAAGTA
* * * * *
67812709 CCTTCGGGATTTAACCGGATA-TAGCT-ACTCGCTCGAATACCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCGGA-ACTAG-TAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATA
67812772 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
64 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
67812828 CC-TC-GGACTTAGCCGGAACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAGT
1 CCTTCGGGACTTAGCCGGAACTAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
67812890 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
67812944 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
67812960 CGGTTATCAT
Statistics
Matches: 122, Mismatches: 6, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
116 63 0.52
117 45 0.37
118 12 0.10
119 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGAACTAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:67821102 original size:39 final size:40
Alignment explanation
Indices: 67821035--67821209 Score: 259
Period size: 39 Copynumber: 4.5 Consensus size: 40
67821025 CGCTCGAATA
* **
67821035 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCACACAAATG
*
67821075 CCTTCGGGACTT-GCCCGGAACTAGTAACTCACACAAATC
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
67821114 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
*
67821154 CCTT-GGGACTTAGCCC-GAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
*
67821192 CCTTCGGGAATTAGCCCG
1 CCTTCGGGACTTAGCCCG
67821210 ATTATCATCC
Statistics
Matches: 124, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
38 26 0.21
39 57 0.46
40 41 0.33
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
Found at i:67825756 original size:46 final size:46
Alignment explanation
Indices: 67825644--67825819 Score: 139
Period size: 46 Copynumber: 3.8 Consensus size: 46
67825634 AGGGTAAGGT
* * * *
67825644 GCCGATGCCATGTCTCAGACATGGTCTTACACTGAC--AGAT-TTCATG
1 GCCGATGCCAAGTCCCAGACAT-GTCTTACACTGGCTTA-ATCTT-AAG
* * *
67825690 GCCGATG-TATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAG
1 GCCGATGCCAAGTCCCAGACATGTCTTACACTGGCTTA-ATCTTAAG
* * *
67825736 GCTGATG-CAAGTCCCAGACATGTCTTACACTAGCGC-TAGTCTTAAT
1 GCCGATGCCAAGTCCCAGACATGTCTTACACT-G-GCTTAATCTTAAG
* *
67825782 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTT
1 GCCGATGCCAAGTCCCAGACAT-GTCTTACACTGGCTT
67825820 TCATAATGTG
Statistics
Matches: 107, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
44 12 0.11
45 12 0.11
46 52 0.49
47 19 0.18
48 12 0.11
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCCAAGTCCCAGACATGTCTTACACTGGCTTAATCTTAAG
Found at i:67838799 original size:7 final size:7
Alignment explanation
Indices: 67838787--67838825 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
67838777 AGCTTTATTT
67838787 TTTCCAC
1 TTTCCAC
67838794 TTTCCAC
1 TTTCCAC
*
67838801 TTTCTAC
1 TTTCCAC
67838808 TTTCCAC
1 TTTCCAC
*
67838815 TTTCCAA
1 TTTCCAC
67838822 TTTC
1 TTTC
67838826 ATCATTTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.15, C:0.36, G:0.00, T:0.49
Consensus pattern (7 bp):
TTTCCAC
Found at i:67841349 original size:29 final size:29
Alignment explanation
Indices: 67841316--67841389 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
67841306 GTGACGAGAT
67841316 TGGCACTAAGTGTGCGTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
67841345 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
67841374 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67841390 AGCTCGAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:67841405 original size:29 final size:29
Alignment explanation
Indices: 67841373--67841448 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
67841363 CTGGAAATAT
* *
67841373 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
67841402 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
67841431 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
67841449 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:67841406 original size:58 final size:58
Alignment explanation
Indices: 67841316--67841448 Score: 142
Period size: 58 Copynumber: 2.3 Consensus size: 58
67841306 GTGACGAGAT
* * * * *
67841316 TGGCACTAAGTGTGCGTGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCT-GAAATCACA
*** * * * *
67841374 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTATGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
67841432 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
67841449 AATCGAGTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
57 4 0.06
58 58 0.94
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.24
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:67849080 original size:29 final size:29
Alignment explanation
Indices: 67849047--67849120 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
67849037 GTGACGAGAT
67849047 TGGCACTAAGTGTGCGTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
67849076 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
67849105 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67849121 AGCTCGAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:67849136 original size:29 final size:29
Alignment explanation
Indices: 67849104--67849179 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
67849094 CTGGAAATAT
* *
67849104 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
67849133 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
67849162 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
67849180 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:67849137 original size:58 final size:58
Alignment explanation
Indices: 67849047--67849179 Score: 142
Period size: 58 Copynumber: 2.3 Consensus size: 58
67849037 GTGACGAGAT
* * * * *
67849047 TGGCACTAAGTGTGCGTGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCT-GAAATCACA
*** * * * *
67849105 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTATGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
67849163 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
67849180 AATCGAGTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
57 4 0.06
58 58 0.94
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.24
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:67851052 original size:10 final size:10
Alignment explanation
Indices: 67851037--67851062 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
67851027 GGTGCCAAAG
67851037 CTATTATGCA
1 CTATTATGCA
67851047 CTATTATGCA
1 CTATTATGCA
67851057 CTATTA
1 CTATTA
67851063 AACAGAGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (10 bp):
CTATTATGCA
Found at i:67851121 original size:25 final size:25
Alignment explanation
Indices: 67851065--67851144 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
67851055 CACTATTAAA
67851065 CAGAGAGCACTAAAGTGCT-AT-A-
1 CAGAGAGCACTAAAGTGCTAATAAT
*
67851087 CAGAGAGCACTAATGTGCTAATAAT
1 CAGAGAGCACTAAAGTGCTAATAAT
** *
67851112 CAGAGAGCACCGACGTGCTAATAAT
1 CAGAGAGCACTAAAGTGCTAATAAT
*
67851137 TAGAGAGC
1 CAGAGAGC
67851145 GCGCTAAGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
22 18 0.36
23 2 0.04
24 1 0.02
25 29 0.58
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19
Consensus pattern (25 bp):
CAGAGAGCACTAAAGTGCTAATAAT
Done.