Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 232 of 345
Found at i:67852874 original size:24 final size:24
Alignment explanation
Indices: 67852842--67852928 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
67852832 AATCTCAAAT
67852842 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
67852866 GCACTATGTGTGCAATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
67852890 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
67852914 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
67852929 ACATAATAAG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:67852894 original size:48 final size:48
Alignment explanation
Indices: 67852842--67852950 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
67852832 AATCTCAAAT
** *
67852842 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGC-AATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
67852890 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
67852938 GCACTATGTGTGC
1 GCACTATGTGTGC
67852951 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 51 0.89
49 6 0.11
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:67852941 original size:24 final size:25
Alignment explanation
Indices: 67852842--67852950 Score: 145
Period size: 24 Copynumber: 4.5 Consensus size: 25
67852832 AATCTCAAAT
*
67852842 GCACTATGTGTGCG-ATTTACTATG
1 GCACTATGTGTGCGAATTTACTATA
67852866 GCACTATGTGTGC-AATTTACTATA
1 GCACTATGTGTGCGAATTTACTATA
*
67852890 GCACTATGTGTGCG-ATTTACTATG
1 GCACTATGTGTGCGAATTTACTATA
** *
67852914 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGAATTTACTATA
67852938 GCACTATGTGTGC
1 GCACTATGTGTGC
67852951 AACGTTTGGT
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
24 71 0.93
25 5 0.07
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (25 bp):
GCACTATGTGTGCGAATTTACTATA
Found at i:67855552 original size:18 final size:18
Alignment explanation
Indices: 67855519--67855553 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67855509 TCCAATACTC
*
67855519 TTTCTTTTTCTATCTTTA
1 TTTCTTTTACTATCTTTA
*
67855537 TTTCTTTTACTTTCTTT
1 TTTCTTTTACTATCTTT
67855554 TTATTTACTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTCTTTTACTATCTTTA
Found at i:67855770 original size:16 final size:16
Alignment explanation
Indices: 67855749--67855786 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
67855739 TTTATTTAAT
67855749 TAATATAAT-ATAACAA
1 TAATATAATAATAA-AA
67855765 TAATATAATAATAAAA
1 TAATATAATAATAAAA
67855781 TAATAT
1 TAATAT
67855787 TTACTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (16 bp):
TAATATAATAATAAAA
Found at i:67855784 original size:11 final size:11
Alignment explanation
Indices: 67855745--67855785 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
67855735 TTACTTTATT
67855745 TAAT-TAAT-A
1 TAATATAATAA
*
67855754 TAATATAACAA
1 TAATATAATAA
67855765 TAATATAATAA
1 TAATATAATAA
*
67855776 TAAAATAATA
1 TAATATAATA
67855786 TTTACTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 4 0.15
10 3 0.11
11 20 0.74
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATATAATAA
Found at i:67857357 original size:15 final size:16
Alignment explanation
Indices: 67857332--67857386 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 16
67857322 AAAGTAAAAC
67857332 AAAAGAAAAAGAAATG
1 AAAAGAAAAAGAAATG
*
67857348 AAAA-AAAAAGAGATAG
1 AAAAGAAAAAGAAAT-G
*
67857364 AAAAGAAACAG-AATG
1 AAAAGAAAAAGAAATG
*
67857379 AAAGGAAA
1 AAAAGAAA
67857387 CAGGGAACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 17 0.52
16 11 0.33
17 5 0.15
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (16 bp):
AAAAGAAAAAGAAATG
Found at i:67857365 original size:21 final size:21
Alignment explanation
Indices: 67857322--67857371 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
67857312 ATATATATAT
*
67857322 AAAGTAAAACAAAAGAAAAAGA
1 AAAG-AAAAAAAAAGAAAAAGA
* * *
67857344 AATGAAAAAAAAAGAGATAGA
1 AAAGAAAAAAAAAGAAAAAGA
67857365 AAAGAAA
1 AAAGAAA
67857372 CAGAATGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.06
Consensus pattern (21 bp):
AAAGAAAAAAAAAGAAAAAGA
Found at i:67858629 original size:2 final size:2
Alignment explanation
Indices: 67858622--67858647 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67858612 TGATTTATGA
67858622 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
67858648 GAATGTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67859252 original size:18 final size:18
Alignment explanation
Indices: 67859231--67859421 Score: 122
Period size: 18 Copynumber: 10.6 Consensus size: 18
67859221 TAACTGATTA
67859231 TTACTGAATAATTAACTG
1 TTACTGAATAATTAACTG
* * * *
67859249 TTACCGGATAATTGACCG
1 TTACTGAATAATTAACTG
*
67859267 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATTA-ACTG
* * *
67859285 TTATTGAATAACTGAA-TA
1 TTACTGAATAA-TTAACTG
*
67859303 TTACTGAATAATTAA-TCA
1 TTACTGAATAATTAACT-G
* * *
67859321 TTACTGAATAACTGATTG
1 TTACTGAATAATTAACTG
*
67859339 TTACTGAATGAA-TGACTG
1 TTACTGAAT-AATTAACTG
*
67859357 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTAACTG
** * *
67859376 TTACTGAATACCTGA-TT
1 TTACTGAATAATTAACTG
*
67859393 TTACTGAATAATTGACTG
1 TTACTGAATAATTAACTG
*
67859411 TTACTGGATAA
1 TTACTGAATAA
67859422 CCGATCAATT
Statistics
Matches: 137, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
17 23 0.17
18 93 0.68
19 19 0.14
20 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTAACTG
Found at i:67859307 original size:36 final size:37
Alignment explanation
Indices: 67859219--67859385 Score: 139
Period size: 36 Copynumber: 4.6 Consensus size: 37
67859209 AAAGGTATAA
* *
67859219 AATAACTGATTATTACTGAATAATTA-ACTGTTACCG
1 AATAACTGAATATTACTGAATAATTAGACTGTTACTG
* * *** * *
67859255 GATAATTGACCGTTACTGGAT-ATTAGACTGTTATTG
1 AATAACTGAATATTACTGAATAATTAGACTGTTACTG
*
67859291 AATAACTGAATATTACTGAATAATTA-A-TCATTACTG
1 AATAACTGAATATTACTGAATAATTAGACT-GTTACTG
* *
67859327 AATAACTGATTGTTACTGAATGAA-T-GACTGTTACTG
1 AATAACTGAATATTACTGAAT-AATTAGACTGTTACTG
* *
67859363 AATAACTTAATTGTTACTGAATA
1 AATAACTGAA-TATTACTGAATA
67859386 CCTGATTTTA
Statistics
Matches: 103, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
35 5 0.05
36 80 0.78
37 18 0.17
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (37 bp):
AATAACTGAATATTACTGAATAATTAGACTGTTACTG
Found at i:67859341 original size:54 final size:54
Alignment explanation
Indices: 67859219--67859422 Score: 182
Period size: 54 Copynumber: 3.8 Consensus size: 54
67859209 AAAGGTATAA
* * * * * * *
67859219 AATAACTGATTATTACTGAATAATTAACTGTTACCGGATAA-TTGACCGTTACTG
1 AATAACTGATTGTTACTGAATAA-TGACTGTTACTGAATAACTTAATCATTACTG
* * * * * *
67859273 GAT-ATTAGACTGTTATTGAATAACTGAATATTACTGAATAA-TTAATCATTACTG
1 AATAACT-GATTGTTACTGAATAA-TGACTGTTACTGAATAACTTAATCATTACTG
**
67859327 AATAACTGATTGTTACTGAATGAATGACTGTTACTGAATAACTTAATTGTTACTG
1 AATAACTGATTGTTACTGAAT-AATGACTGTTACTGAATAACTTAATCATTACTG
* *
67859382 AATACCTGATT-TTACTGAATAATTGACTGTTACTGGATAAC
1 AATAACTGATTGTTACTGAATAA-TGACTGTTACTGAATAAC
67859423 CGATCAATTG
Statistics
Matches: 121, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
53 4 0.03
54 92 0.76
55 25 0.21
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (54 bp):
AATAACTGATTGTTACTGAATAATGACTGTTACTGAATAACTTAATCATTACTG
Found at i:67859342 original size:72 final size:71
Alignment explanation
Indices: 67859219--67859421 Score: 212
Period size: 72 Copynumber: 2.8 Consensus size: 71
67859209 AAAGGTATAA
* * * * * *
67859219 AATAACTGATTATTACTGAATAATTAA-CTGTTACCGGATAATTGACCGTTACTGGATATTAGAC
1 AATAACTGAATATTACTGAATAATTAATC-ATTACTGAATAATTGACTGTTACTGGATAAT-GAC
*
67859283 TGTTATTG
64 TGTTACTG
* * *
67859291 AATAACTGAATATTACTGAATAATTAATCATTACTGAATAACTGATTGTTACTGAATGAATGACT
1 AATAACTGAATATTACTGAATAATTAATCATTACTGAATAATTGACTGTTACTGGAT-AATGACT
67859356 GTTACTG
65 GTTACTG
* * ** * *
67859363 AATAACTTAATTGTTACTGAATACCTGAT-TTTACTGAATAATTGACTGTTACTGGATAA
1 AATAACTGAA-TATTACTGAATAATTAATCATTACTGAATAATTGACTGTTACTGGATAA
67859422 CCGATCAATT
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 2 0.02
72 90 0.83
73 17 0.16
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (71 bp):
AATAACTGAATATTACTGAATAATTAATCATTACTGAATAATTGACTGTTACTGGATAATGACTG
TTACTG
Found at i:67859468 original size:36 final size:36
Alignment explanation
Indices: 67859428--67859501 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 36
67859418 ATAACCGATC
* ** *
67859428 AATTGATCGATACTGAATAACTGGTTATTATTGAAT
1 AATTGATCGATACCGAATAACTGACTATTACTGAAT
* *
67859464 AATTGATTGTTACCGAATAACTGACTATTACTGAAT
1 AATTGATCGATACCGAATAACTGACTATTACTGAAT
67859500 AA
1 AA
67859502 ATAATTGTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (36 bp):
AATTGATCGATACCGAATAACTGACTATTACTGAAT
Found at i:67859509 original size:36 final size:36
Alignment explanation
Indices: 67859442--67859510 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
67859432 GATCGATACT
** * * *
67859442 GAATAACTGGTTATTATTGAATAATTGATTGTTACC
1 GAATAACTGACTATTACTGAATAAATAATTGTTACC
67859478 GAATAACTGACTATTACTGAATAAATAATTGTT
1 GAATAACTGACTATTACTGAATAAATAATTGTT
67859511 CTGATTGTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (36 bp):
GAATAACTGACTATTACTGAATAAATAATTGTTACC
Found at i:67865019 original size:24 final size:24
Alignment explanation
Indices: 67864983--67865028 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
67864973 CTAAACCTAA
* *
67864983 GTTTTAAAGATATTTTAATTTTCT
1 GTTTAAAAAATATTTTAATTTTCT
67865007 GTTTAAAAAATATTTTAATTTT
1 GTTTAAAAAATATTTTAATTTT
67865029 AATAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (24 bp):
GTTTAAAAAATATTTTAATTTTCT
Found at i:67865955 original size:5 final size:5
Alignment explanation
Indices: 67865935--67865971 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
67865925 CCCAACTGTT
*
67865935 CCAAC TCCATC CCAAC CCAAC CCAAC CCAAC CCAAC C
1 CCAAC -CCAAC CCAAC CCAAC CCAAC CCAAC CCAAC C
67865972 TCATTTTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.35, C:0.59, G:0.00, T:0.05
Consensus pattern (5 bp):
CCAAC
Found at i:67871290 original size:10 final size:10
Alignment explanation
Indices: 67871258--67871306 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
67871248 ATTATAATTT
67871258 TTTTTTAA-A
1 TTTTTTAATA
*
67871267 -TTCTTAAT-
1 TTTTTTAATA
67871275 TTTTTTAATA
1 TTTTTTAATA
67871285 TTTTTTAATA
1 TTTTTTAATA
*
67871295 ATTTTTATATA
1 TTTTTTA-ATA
67871306 T
1 T
67871307 ATTTCTCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
8 6 0.19
9 7 0.22
10 16 0.50
11 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTTAATA
Found at i:67871360 original size:26 final size:25
Alignment explanation
Indices: 67871296--67871360 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 25
67871286 TTTTTAATAA
67871296 TTTTTATATATATTTCTCTATTTAATAT
1 TTTTTA-ATA-ATTTCTCTATTT-ATAT
67871324 TTTTT-AT-ATTTCTCTATTT-TAT
1 TTTTTAATAATTTCTCTATTTATAT
67871346 TGATTTTAATAATTT
1 T--TTTTAATAATTT
67871361 TTAATTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
22 4 0.12
24 16 0.48
25 2 0.06
26 6 0.18
28 5 0.15
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (25 bp):
TTTTTAATAATTTCTCTATTTATAT
Found at i:67872123 original size:5 final size:5
Alignment explanation
Indices: 67872115--67872140 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
67872105 AAAGAAAAGA
67872115 GAAGG GAAGG GAAGG GAAGG GAAGG G
1 GAAGG GAAGG GAAGG GAAGG GAAGG G
67872141 GAATGAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (5 bp):
GAAGG
Found at i:67876310 original size:16 final size:16
Alignment explanation
Indices: 67876240--67876310 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
67876230 TTAAAAATAA
*
67876240 TAATATTTTAATAATT
1 TAATATTTTATTAATT
**
67876256 TAATATTAAATTAAATT
1 TAATATTTTATT-AATT
* *
67876273 AAATATTTATCTTAA--
1 TAATATTT-TATTAATT
*
67876288 TAGTATTTTATTAATT
1 TAATATTTTATTAATT
67876304 TAATATT
1 TAATATT
67876311 AAAGTGATTA
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
14 5 0.12
15 6 0.15
16 15 0.38
17 12 0.30
18 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (16 bp):
TAATATTTTATTAATT
Found at i:67876338 original size:39 final size:37
Alignment explanation
Indices: 67876259--67876344 Score: 93
Period size: 39 Copynumber: 2.3 Consensus size: 37
67876249 AATAATTTAA
**
67876259 TATTAAATTAAATTAAATATTTATCTTAATAGTATTT
1 TATTAAATTAAATTAAATATTTATCTTAATAGTAAAT
* *
67876296 TATTAATTTAATATTAAAGTGA-TTATCTTAATATTAAAT
1 TATTAAATTAA-ATTAAA-T-ATTTATCTTAATAGTAAAT
*
67876335 TATTATATTA
1 TATTAAATTA
67876345 TTTAGTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 10 0.25
38 6 0.15
39 23 0.57
40 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.51
Consensus pattern (37 bp):
TATTAAATTAAATTAAATATTTATCTTAATAGTAAAT
Found at i:67877959 original size:28 final size:28
Alignment explanation
Indices: 67877898--67877995 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
67877888 ATCACAATTG
** * *
67877898 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
67877927 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
67877955 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
67877983 GCACTAAGTGTGC
1 GCACTAAGTGTGC
67877996 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:67886306 original size:29 final size:29
Alignment explanation
Indices: 67886274--67886374 Score: 152
Period size: 29 Copynumber: 3.5 Consensus size: 29
67886264 ATAGTGAATC
67886274 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
67886303 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* * *
67886332 CGCACACTTAGTGCTATAGA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
67886360 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67886375 GTACAATTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 2 0.03
28 18 0.26
29 48 0.71
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.33
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:67886384 original size:58 final size:57
Alignment explanation
Indices: 67886270--67886403 Score: 155
Period size: 58 Copynumber: 2.3 Consensus size: 57
67886260 GCATATAGTG
* * * *
67886270 AATCCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTT-
1 AATCCGCACACTTAGTGCTATAGA-TATCAACTCGCACACTTAGTGCTATAAATTTTA
* * *
67886327 CAGCTCGCACACTTAGTGCTATAGA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTA
1 AATC-CGCACACTTAGTGCTATAGATATC-AACTCGCACACTTAGTGCTATA-AATTTTA
67886386 AATCCGCACACTTAGTGC
1 AATCCGCACACTTAGTGC
67886404 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
56 2 0.03
57 22 0.34
58 38 0.59
59 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (57 bp):
AATCCGCACACTTAGTGCTATAGATATCAACTCGCACACTTAGTGCTATAAATTTTA
Found at i:67892200 original size:37 final size:37
Alignment explanation
Indices: 67892121--67892203 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
67892111 AACCTTTAGT
* * *
67892121 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
*
67892158 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
67892195 TCGGGTCTT
1 TCGGGTCTT
67892204 TAGAGCTCGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.33, G:0.23, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:67892390 original size:47 final size:47
Alignment explanation
Indices: 67892321--67892758 Score: 732
Period size: 47 Copynumber: 9.3 Consensus size: 47
67892311 CCCTTCGGAA
* * * * *
67892321 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67892368 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67892415 CTTATCACATATATGCACTTTCACATTCATCCCATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67892462 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67892509 CTTCTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67892556 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67892603 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67892650 CTTATCACATATATACACTTTCACTTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67892697 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67892744 CTTATCACATATATA
1 CTTATCACATATATA
67892759 TATCTCATAC
Statistics
Matches: 374, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 374 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67895612 original size:27 final size:26
Alignment explanation
Indices: 67895551--67895661 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
67895541 AGCATGGCTG
* * *
67895551 CCAGAATAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
67895577 CTAGAACAGATAATCGTGGCAAAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
67895604 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
67895631 CCAGATCAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
67895658 CCAG
1 CCAG
67895662 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 13 0.18
27 59 0.80
28 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:67897091 original size:24 final size:24
Alignment explanation
Indices: 67897063--67897163 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
67897053 CCAACACTGT
* *
67897063 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
67897087 TCTCCCTTATCAGCTTCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
67897111 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
67897135 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
67897159 TCTCC
1 TCTCC
67897164 TGACAGACTT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.25, C:0.40, G:0.02, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:67902128 original size:27 final size:26
Alignment explanation
Indices: 67902070--67902179 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 26
67902060 AGCATGGCTG
* * *
67902070 CCAGAATAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
67902096 CTAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
67902123 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
67902150 ACAGATA-AGATAATTGTGGCATAGCCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
67902177 CCA
1 CCA
67902180 AGACGCTTCC
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 13 0.18
27 56 0.78
28 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:67903625 original size:24 final size:24
Alignment explanation
Indices: 67903590--67903690 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
67903580 CCAACACTGT
* *
67903590 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
67903614 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
67903638 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
67903662 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
67903686 TCTCC
1 TCTCC
67903691 TAACAGACTT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.25, C:0.41, G:0.02, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:67906281 original size:30 final size:30
Alignment explanation
Indices: 67906238--67906295 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
67906228 CATGGACCGA
*
67906238 CACATGGGCGTGTGGC-CAGCCCGTGTGGCT
1 CACACGGGCGTGT-GCTCAGCCCGTGTGGCT
* *
67906268 CACACGGGTGTGTGCTCTGCCCGTGTGG
1 CACACGGGCGTGTGCTCAGCCCGTGTGG
67906296 AAGTAGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.09, C:0.29, G:0.40, T:0.22
Consensus pattern (30 bp):
CACACGGGCGTGTGCTCAGCCCGTGTGGCT
Found at i:67907790 original size:6 final size:6
Alignment explanation
Indices: 67907771--67907844 Score: 121
Period size: 6 Copynumber: 12.3 Consensus size: 6
67907761 ACTAAGCATG
* *
67907771 AAAAGA AAAGTA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
67907819 AAAATA AAAATA AAAATA AAGATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
67907845 TGGACTCAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:67909748 original size:5 final size:5
Alignment explanation
Indices: 67909738--67909765 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
67909728 GAAGATGGGG
67909738 GAGAA GAGAA GAGAA GAGAA GAGAA GAG
1 GAGAA GAGAA GAGAA GAGAA GAGAA GAG
67909766 CAAAGAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (5 bp):
GAGAA
Found at i:67914962 original size:79 final size:81
Alignment explanation
Indices: 67914823--67915014 Score: 205
Period size: 79 Copynumber: 2.4 Consensus size: 81
67914813 TTGAATGATG
** * * *
67914823 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
67914887 CATGCAAGTTAATA-AA
65 CATGCAAGTTAATATAA
* **
67914903 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
* * *
67914966 CGTGCGAGTTACTATAA
65 CATGCAAGTTAATATAA
** *
67914983 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67915015 CGTTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 54 0.57
80 39 0.41
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
ATGCAAGTTAATATAA
Found at i:67914963 original size:40 final size:39
Alignment explanation
Indices: 67914893--67915014 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 39
67914883 CGTTCATGCA
* *
67914893 AGTTAATAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 AGTTACTAAA-CCGGGTTAAGTCCCGAAGGCATTTGTGCG
*
67914932 AGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCGTGCG
1 AGTTACTAAA-CCGGGTTAAGTCCCGAAGGCATTTGTGCG
* *
67914972 AGTTACTATAACCGGGCTT-TGTCCCGAAGGCATTTGAGCG
1 AGTTACTA-AACCGGG-TTAAGTCCCGAAGGCATTTGTGCG
67915012 AGT
1 AGT
67915015 CGTTATATCC
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
39 18 0.25
40 51 0.70
41 4 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
AGTTACTAAACCGGGTTAAGTCCCGAAGGCATTTGTGCG
Found at i:67919392 original size:22 final size:22
Alignment explanation
Indices: 67919367--67919411 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
67919357 GAAAAGTTAG
67919367 TAAATTAAAATAAAAACAAAAA
1 TAAATTAAAATAAAAACAAAAA
** *
67919389 TAAATTGCAATAAAAATAAAAA
1 TAAATTAAAATAAAAACAAAAA
67919411 T
1 T
67919412 GGCTAAAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.22
Consensus pattern (22 bp):
TAAATTAAAATAAAAACAAAAA
Found at i:67936080 original size:80 final size:80
Alignment explanation
Indices: 67935996--67936144 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
67935986 TATGGTAACC
* * * *
67935996 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
67936060 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
67936076 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
67936141 CCGG
66 CCGG
67936145 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:67936086 original size:40 final size:38
Alignment explanation
Indices: 67936037--67936144 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
67936027 ATCACGATTT
*
67936037 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
67936077 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
67936117 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
67936145 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:67944438 original size:42 final size:42
Alignment explanation
Indices: 67944391--67944482 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
67944381 CTAACTACAT
* * *
67944391 GCCCATGTACCTAGCCGTGTGTCACACATAGTCTAGACACAC
1 GCCCATGTACCTAGCCATGTGTCACAAACAGTCTAGACACAC
*
67944433 GCCCATGTACCTAGCCATGTGTCACAAACATTCTAGACACAC
1 GCCCATGTACCTAGCCATGTGTCACAAACAGTCTAGACACAC
67944475 GCCCATGT
1 GCCCATGT
67944483 GCCTGTGTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.34, G:0.17, T:0.22
Consensus pattern (42 bp):
GCCCATGTACCTAGCCATGTGTCACAAACAGTCTAGACACAC
Found at i:67946069 original size:46 final size:46
Alignment explanation
Indices: 67945973--67946232 Score: 212
Period size: 46 Copynumber: 5.6 Consensus size: 46
67945963 GAGCTAGCGA
* * * * *
67945973 AAGACCATGTCTGGGACATAGCATCGACATTGAGACAAGT-GCTAGTGT
1 AAGACCATGTCTGGGACATGGCATCG-CCTCGAG--ATGTAGCCAGTGT
67946021 AAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTAAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGT-AGCCAGTGT
* *
67946067 AAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGT-GTCAGTG-
1 AAGACCATGTCTGGGACATGGCATCGCCT-CGAGATGTAGCCAGTGT
* * * * *
67946110 AAGACCATGTCTGGAACATGGCATCGACATAGATATGTGGGAGCTAGTGT
1 AAGACCATGTCTGGGACATGGCATCG-CCTCGAGATGT---AGCCAGTGT
* * * *
67946160 AAGACCATGTATAGGACATGGCATCGACTTGATGGATG-AGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATCGCCTCGA--GATGTAGCCAGTGT
67946207 AAGACCATGTCTGGGACATGGCATCG
1 AAGACCATGTCTGGGACATGGCATCG
67946233 GCATTATACC
Statistics
Matches: 175, Mismatches: 23, Indels: 29
0.77 0.10 0.13
Matches are distributed among these distances:
43 4 0.02
44 22 0.13
45 15 0.09
46 49 0.28
47 47 0.27
48 4 0.02
49 8 0.05
50 23 0.13
51 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AAGACCATGTCTGGGACATGGCATCGCCTCGAGATGTAGCCAGTGT
Found at i:67946224 original size:47 final size:47
Alignment explanation
Indices: 67945973--67946232 Score: 216
Period size: 47 Copynumber: 5.6 Consensus size: 47
67945963 GAGCTAGCGA
* * * * *
67945973 AAGACCATGTCTGGGACATAGCATCGACATTGAGACAAGTGCTAGTGT
1 AAGACCATGTCTGGGACATGGCATCGAC-TTGAGAGATGAGCCAGTGT
* * *
67946021 AAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATG-TAAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATC-GACTTGAGA-GATGAGCCAGTGT
* * *
67946067 AAGA-CATGTCTGGGACAT-GCATCGGC-T-ACGAGATGTGTCAGTG-
1 AAGACCATGTCTGGGACATGGCATCGACTTGA-GAGATGAGCCAGTGT
* * * *
67946110 AAGACCATGTCTGGAACATGGCATCGACAT-AGATATGTGGGAGCTAGTGT
1 AAGACCATGTCTGGGACATGGCATCGACTTGAGAGA--T--GAGCCAGTGT
* *
67946160 AAGACCATGTATAGGACATGGCATCGACTTGATG-GATGAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATCGACTTGA-GAGATGAGCCAGTGT
67946207 AAGACCATGTCTGGGACATGGCATCG
1 AAGACCATGTCTGGGACATGGCATCG
67946233 GCATTATACC
Statistics
Matches: 172, Mismatches: 26, Indels: 29
0.76 0.11 0.13
Matches are distributed among these distances:
43 6 0.03
44 22 0.13
45 12 0.07
46 42 0.24
47 50 0.29
48 4 0.02
49 7 0.04
50 26 0.15
51 2 0.01
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AAGACCATGTCTGGGACATGGCATCGACTTGAGAGATGAGCCAGTGT
Found at i:67953258 original size:93 final size:93
Alignment explanation
Indices: 67953099--67953269 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
67953089 GGATGGTTGA
* * *
67953099 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
67953164 TGAGTCCGAGTTCGTGAGATATAACTAG
66 TGAGTCCGAGTTCGTGAGATATAACTAG
* *
67953192 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
*
67953257 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
67953270 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATATAACTAG
Found at i:67953272 original size:46 final size:46
Alignment explanation
Indices: 67953103--67953274 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
67953093 GGTTGAGCAT
* *
67953103 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * **
67953149 CTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GAT-ATAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
*
67953194 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *
67953242 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67953275 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 57 0.56
47 26 0.26
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:67957673 original size:15 final size:17
Alignment explanation
Indices: 67957647--67957680 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
67957637 TATTTAATTA
67957647 TTTATCATCTTT-TAAT
1 TTTATCATCTTTCTAAT
67957663 TTTATCA-CTTTCTAAT
1 TTTATCATCTTTCTAAT
67957679 TT
1 TT
67957681 AGTCCTTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATCATCTTTCTAAT
Found at i:67960294 original size:2 final size:2
Alignment explanation
Indices: 67960287--67960314 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
67960277 TTATAAGCTC
67960287 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67960315 GCATGTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67960563 original size:17 final size:17
Alignment explanation
Indices: 67960541--67960576 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
67960531 ATAGATGTTG
67960541 GTATTGCATTGACAAGT
1 GTATTGCATTGACAAGT
67960558 GTATTGCATTGACAAGT
1 GTATTGCATTGACAAGT
67960575 GT
1 GT
67960577 TTTGATGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (17 bp):
GTATTGCATTGACAAGT
Found at i:67967308 original size:20 final size:18
Alignment explanation
Indices: 67967258--67967366 Score: 57
Period size: 20 Copynumber: 5.9 Consensus size: 18
67967248 CTACAAGATA
67967258 AATATTAAATTAA-ATGT
1 AATATTAAATTAATATGT
*
67967275 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TGT
**
67967295 AATATTAAATTAATAAAAT
1 AATATTAAATTAAT-ATGT
* *
67967314 ACTATTAAGTTAAGTAT-T
1 AATATTAAATTAA-TATGT
67967332 AA-ATTAAATTTAATAT-T
1 AATATTAAA-TTAATATGT
*
67967349 AAACTATTAAAATAATAT
1 -AA-TATTAAATTAATAT
67967367 TATTTTTGGA
Statistics
Matches: 72, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
17 20 0.28
18 9 0.12
19 21 0.29
20 22 0.31
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (18 bp):
AATATTAAATTAATATGT
Found at i:67970746 original size:2 final size:2
Alignment explanation
Indices: 67970739--67970765 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67970729 AATAAATTTG
67970739 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
67970766 TAATAGACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67970812 original size:22 final size:22
Alignment explanation
Indices: 67970787--67970830 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
67970777 ATTTTATTCA
67970787 AATGTTTCTTAAAACTGTCAAT
1 AATGTTTCTTAAAACTGTCAAT
67970809 AATGTTTCTTAAAACTGTCAAT
1 AATGTTTCTTAAAACTGTCAAT
67970831 GAAATTGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (22 bp):
AATGTTTCTTAAAACTGTCAAT
Found at i:67971067 original size:2 final size:2
Alignment explanation
Indices: 67971060--67971085 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67971050 GAAATGAGTT
67971060 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
67971086 AATTTCACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67975455 original size:46 final size:46
Alignment explanation
Indices: 67975311--67975526 Score: 197
Period size: 46 Copynumber: 4.6 Consensus size: 46
67975301 GTTATTGGCT
* * * * *
67975311 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGTC
* * *
67975357 AGTGTAAGACCATGTCTGGGACATGGTATCGGCATTGAGACGAGAG-C
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAGTC
*
67975404 TAGTGTAAGACATGTCGGGGACATGCATCGGCCTCGAGACGTA-AGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGAGTC
* * * *
67975451 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACTAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGAGTC
* *
67975497 AGTGTAAGACCATATCTGGGATATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
67975527 AACTTGATAT
Statistics
Matches: 142, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
45 3 0.02
46 71 0.50
47 41 0.29
48 26 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGTC
Found at i:67983157 original size:46 final size:46
Alignment explanation
Indices: 67982962--67983172 Score: 169
Period size: 46 Copynumber: 4.5 Consensus size: 46
67982952 GTTGTTGGCT
* * * * * *
67982962 AGTGTAATACATGTCTGGGACATGCATTGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GACGATAGCC
* * * **
67983008 AGTGTAAGACCATATCTGGGACATGGCATCGG-TATTGAGACGACAGTT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGACGATAGCC
* *
67983056 AGTTTAAGACATGTCGGGGACATGCATCGGCCT-CGAGACG-TATGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGATA-GCC
* * *
67983102 AGTGAAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCC
* *
67983148 AATGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
67983173 GCATTGACTT
Statistics
Matches: 130, Mismatches: 25, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
45 3 0.02
46 64 0.49
47 42 0.32
48 20 0.15
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCC
Found at i:67987306 original size:42 final size:42
Alignment explanation
Indices: 67987211--67987306 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
67987201 AGCTCTATTA
* * *
67987211 AGCTTCTGTTTAACCCTTATGGGTTTCCGTCCAACTCTTACG
1 AGCTTCTGTTCAACCCTTATGGGTTTCAGTCCAACTCTCACG
** * *
67987253 AGCTT-TCGTTCAACCCTTATGGGTTTCAGTTTAGCTCTCATG
1 AGCTTCT-GTTCAACCCTTATGGGTTTCAGTCCAACTCTCACG
67987295 AGCTTCTGTTCA
1 AGCTTCTGTTCA
67987307 GCCTCCAGGC
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 43 0.96
43 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.40
Consensus pattern (42 bp):
AGCTTCTGTTCAACCCTTATGGGTTTCAGTCCAACTCTCACG
Found at i:67989532 original size:50 final size:50
Alignment explanation
Indices: 67989456--67989564 Score: 155
Period size: 50 Copynumber: 2.2 Consensus size: 50
67989446 TGATGCTAGG
* * * * * * *
67989456 GAGATATGAGAGCTAGTGTAATACCATGTTTGGGACATGGTATCGGTCTC
1 GAGATATGAAAGCTAGTGTAAGACCATGTCTAGGACATAGCATCGGCCTC
67989506 GAGATATGAAAGCTAGTGTAAGACCATGTCTAGGACATAGCATCGGCCTC
1 GAGATATGAAAGCTAGTGTAAGACCATGTCTAGGACATAGCATCGGCCTC
67989556 GAGATATGA
1 GAGATATGA
67989565 GATATTTGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (50 bp):
GAGATATGAAAGCTAGTGTAAGACCATGTCTAGGACATAGCATCGGCCTC
Found at i:68000836 original size:21 final size:21
Alignment explanation
Indices: 68000791--68000946 Score: 100
Period size: 21 Copynumber: 7.5 Consensus size: 21
68000781 TGTGTTTACT
* * *
68000791 CTTC-GTTTAGCTCTCACGAG
1 CTTCTGTTTAACTCTTATGAG
*
68000811 CTTCTGTTTAACTCATATGAG
1 CTTCTGTTTAACTCTTATGAG
* * *
68000832 TTTCTGTTCAGCT-TTATTGAG
1 CTTCTGTTTAACTCTTA-TGAG
* *
68000853 CTTCTGTTTAACCCTTATGGG
1 CTTCTGTTTAACTCTTATGAG
* ** * * *
68000874 TTTCCATTCAGCTCTTACGAG
1 CTTCTGTTTAACTCTTATGAG
* * * *
68000895 CTTCGGTTCAACCCTTATGGG
1 CTTCTGTTTAACTCTTATGAG
* *
68000916 TTTCTGTTTAACTCTAATGAG
1 CTTCTGTTTAACTCTTATGAG
68000937 CTTCTGTTTA
1 CTTCTGTTTA
68000947 GCCTCTGAGC
Statistics
Matches: 98, Mismatches: 35, Indels: 5
0.71 0.25 0.04
Matches are distributed among these distances:
20 6 0.06
21 89 0.91
22 3 0.03
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.43
Consensus pattern (21 bp):
CTTCTGTTTAACTCTTATGAG
Found at i:68000877 original size:42 final size:41
Alignment explanation
Indices: 68000808--68000946 Score: 152
Period size: 42 Copynumber: 3.3 Consensus size: 41
68000798 TAGCTCTCAC
* * *
68000808 GAGCTTCTGTTTAACTCATATGAGTTTCTGTTCAGCTTTATT
1 GAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGCTTTA-T
** *
68000850 GAGCTTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCTTAC
1 GAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGCT-TTAT
* * * * *
68000892 GAGCTTCGGTTCAACCCTTATGGGTTTCTGTTTAACTCTAAT
1 GAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGCT-TTAT
68000934 GAGCTTCTGTTTA
1 GAGCTTCTGTTTA
68000947 GCCTCTGAGC
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 77 0.96
43 3 0.04
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.43
Consensus pattern (41 bp):
GAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGCTTTAT
Found at i:68004747 original size:47 final size:45
Alignment explanation
Indices: 68004637--68004757 Score: 147
Period size: 47 Copynumber: 2.6 Consensus size: 45
68004627 ATAAATGTGT
* *
68004637 GCTAGTGTAAGACATGTCTGGGATAT-GCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-CATTACGAGA
*
68004683 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCATT---ACGAGA
68004731 GCTAGTGTAAGACATGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
68004758 CGTCGAGCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
45 4 0.06
46 11 0.17
47 28 0.42
48 23 0.35
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCATTACGAGA
Found at i:68007373 original size:40 final size:40
Alignment explanation
Indices: 68007337--68007646 Score: 464
Period size: 40 Copynumber: 7.8 Consensus size: 40
68007327 GGATATAGCT
*
68007337 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
** * *
68007377 GTTTGCACAAATCCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
68007417 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
68007457 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
68007497 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
68007537 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
68007577 ACTAGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
68007617 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
68007647 CGTTATCATC
Statistics
Matches: 251, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 245 0.98
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:68017151 original size:41 final size:41
Alignment explanation
Indices: 68017106--68017223 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
68017096 TGAAAGATAA
68017106 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
68017147 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68017177 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68017218 ATGTAG
1 ATGTAG
68017224 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:68017162 original size:71 final size:71
Alignment explanation
Indices: 68017074--68017237 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68017064 GAGATGTATC
68017074 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68017139 AGGACA
66 AGGACA
68017145 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68017210 AGGACA
66 AGGACA
68017216 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
68017238 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:68019579 original size:40 final size:40
Alignment explanation
Indices: 68019543--68019852 Score: 500
Period size: 40 Copynumber: 7.8 Consensus size: 40
68019533 GGATATAGCT
*
68019543 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
68019583 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
68019623 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
68019663 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
68019703 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
68019743 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
68019783 ACTAGTACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
68019823 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
68019853 CGTTATCATC
Statistics
Matches: 258, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
39 2 0.01
40 252 0.98
41 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:68022208 original size:46 final size:44
Alignment explanation
Indices: 68022154--68022273 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 44
68022144 GATAAGAGCT
*
68022154 AGTGTAAGACATGTCTGGGACATGCATTAGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGATGT--GCC
* * * *
68022200 AGTGTAAGACATGTCTGGAATATGCATCAGCTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTGCC
68022244 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
68022274 GTGATACGTG
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 11 0.17
45 14 0.22
46 39 0.61
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTGCC
Found at i:68022669 original size:25 final size:25
Alignment explanation
Indices: 68022635--68022684 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
68022625 GACTTGATCC
68022635 GTAGAAATCCCTAAGTTATATTATT
1 GTAGAAATCCCTAAGTTATATTATT
68022660 GTAGAAATCCCTAAGTTATATTATT
1 GTAGAAATCCCTAAGTTATATTATT
68022685 ATCTCTCTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (25 bp):
GTAGAAATCCCTAAGTTATATTATT
Found at i:68022877 original size:86 final size:86
Alignment explanation
Indices: 68022771--68022942 Score: 326
Period size: 86 Copynumber: 2.0 Consensus size: 86
68022761 CATTAACTCG
* *
68022771 ATCTATGGACTCCCTTATTAGGTTTCACCCTAATCTGGCAAAATCTTGTCACCCTATCTCTAGGC
1 ATCTATGAACTCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTATCTCTAGGC
68022836 GTGCAATCAACTCCGCTTAAT
66 GTGCAATCAACTCCGCTTAAT
68022857 ATCTATGAACTCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTATCTCTAGGC
1 ATCTATGAACTCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTATCTCTAGGC
68022922 GTGCAATCAACTCCGCTTAAT
66 GTGCAATCAACTCCGCTTAAT
68022943 TACGACAAAT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (86 bp):
ATCTATGAACTCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTATCTCTAGGC
GTGCAATCAACTCCGCTTAAT
Found at i:68025486 original size:12 final size:11
Alignment explanation
Indices: 68025423--68025490 Score: 57
Period size: 12 Copynumber: 5.8 Consensus size: 11
68025413 GTATTAAAGG
68025423 AAAATAAAATA
1 AAAATAAAATA
*
68025434 AAAAGTACAATA
1 AAAA-TAAAATA
68025446 AGAAGAT-AAATA
1 A-AA-ATAAAATA
* *
68025458 AAGATAAAATTG
1 AAAATAAAA-TA
68025470 AAAATAAAATA
1 AAAATAAAATA
68025481 ATAAATAAAA
1 A-AAATAAAA
68025491 AGTTTTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
10 2 0.04
11 10 0.22
12 29 0.64
13 3 0.07
14 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.07, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:68027125 original size:17 final size:17
Alignment explanation
Indices: 68027103--68027144 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
68027093 ACAAATGCAA
68027103 GAGCTTGGTAGAGGGAG
1 GAGCTTGGTAGAGGGAG
68027120 GAGCTTGGTAGAGGGAG
1 GAGCTTGGTAGAGGGAG
68027137 GAGCTTGG
1 GAGCTTGG
68027145 GTCGTCGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.21, C:0.07, G:0.52, T:0.19
Consensus pattern (17 bp):
GAGCTTGGTAGAGGGAG
Found at i:68041374 original size:7 final size:7
Alignment explanation
Indices: 68041359--68041413 Score: 76
Period size: 7 Copynumber: 7.9 Consensus size: 7
68041349 TACAAAAAGT
68041359 AATTGAA
1 AATTGAA
*
68041366 AATTAAA
1 AATTGAA
68041373 AATT-AA
1 AATTGAA
68041379 GAATTGAA
1 -AATTGAA
*
68041387 AATTAAA
1 AATTGAA
68041394 AATTGAA
1 AATTGAA
68041401 AATTGAA
1 AATTGAA
68041408 AATTGA
1 AATTGA
68041414 GGATTCAGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
6 2 0.05
7 39 0.91
8 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29
Consensus pattern (7 bp):
AATTGAA
Found at i:68041425 original size:21 final size:21
Alignment explanation
Indices: 68041359--68041411 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 21
68041349 TACAAAAAGT
68041359 AATTGAAAATTAAAAATTAAG
1 AATTGAAAATTAAAAATTAAG
68041380 AATTGAAAATTAAAAATTGAA-
1 AATTGAAAATTAAAAATT-AAG
68041401 AATTGAAAATT
1 AATTGAAAATT
68041412 GAGGATTCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 29 0.94
22 2 0.06
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (21 bp):
AATTGAAAATTAAAAATTAAG
Found at i:68044262 original size:45 final size:45
Alignment explanation
Indices: 68044212--68044304 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
68044202 TTTGCCCCGT
68044212 TAAATTATGTTGTTTACTTTTGTTCATTCAAGTTTGGCCTATAAG
1 TAAATTATGTTGTTTACTTTTGTTCATTCAAGTTTGGCCTATAAG
*
68044257 TAAATTATGTTGTTTGCTTTTGTTCATTCAAGTTTGGCCTATAAG
1 TAAATTATGTTGTTTACTTTTGTTCATTCAAGTTTGGCCTATAAG
68044302 TAA
1 TAA
68044305 GCTAAATTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.48
Consensus pattern (45 bp):
TAAATTATGTTGTTTACTTTTGTTCATTCAAGTTTGGCCTATAAG
Found at i:68044367 original size:25 final size:25
Alignment explanation
Indices: 68044332--68044386 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
68044322 TGGACCAACT
68044332 ATATC-ATCCTTTGATTCAATTTTA
1 ATATCAATCCTTTGATTCAATTTTA
68044356 ATATCAATCCTTTGATTCAATTTTA
1 ATATCAATCCTTTGATTCAATTTTA
68044381 ATATCA
1 ATATCA
68044387 GCCCTTGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 5 0.17
25 25 0.83
ACGTcount: A:0.33, C:0.16, G:0.04, T:0.47
Consensus pattern (25 bp):
ATATCAATCCTTTGATTCAATTTTA
Found at i:68044392 original size:25 final size:25
Alignment explanation
Indices: 68044339--68044392 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
68044329 ACTATATCAT
*
68044339 CCTTTGATTCAATTTTAATATCAAT
1 CCTTTGATTCAATTTTAATATCAAC
*
68044364 CCTTTGATTCAATTTTAATATCAGC
1 CCTTTGATTCAATTTTAATATCAAC
68044389 CCTT
1 CCTT
68044393 GACTAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.20, G:0.06, T:0.46
Consensus pattern (25 bp):
CCTTTGATTCAATTTTAATATCAAC
Found at i:68050125 original size:22 final size:22
Alignment explanation
Indices: 68050110--68050152 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
68050100 TATTTTCTCT
*
68050110 CTATTTTGCTACTATTTTATTA
1 CTATGTTGCTACTATTTTATTA
*
68050132 TTATGTTGCTACTATTTTATT
1 CTATGTTGCTACTATTTTATT
68050153 GTTATTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.12, G:0.07, T:0.60
Consensus pattern (22 bp):
CTATGTTGCTACTATTTTATTA
Found at i:68050157 original size:22 final size:22
Alignment explanation
Indices: 68050115--68050157 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
68050105 TCTCTCTATT
68050115 TTGCTACTATTTTATTATTATG
1 TTGCTACTATTTTATTATTATG
*
68050137 TTGCTACTATTTTATTGTTAT
1 TTGCTACTATTTTATTATTAT
68050158 TGTTTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.60
Consensus pattern (22 bp):
TTGCTACTATTTTATTATTATG
Found at i:68050302 original size:25 final size:24
Alignment explanation
Indices: 68050268--68050318 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
68050258 ACATACTTTT
68050268 TAAAATTTATTTTCA-ATTTGTTAG
1 TAAAATTTATTTTCATATTT-TTAG
*
68050292 TAAATATTTATTTTGATATTTTTAG
1 TAAA-ATTTATTTTCATATTTTTAG
68050317 TA
1 TA
68050319 TTTTTGATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 4 0.17
25 16 0.67
26 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (24 bp):
TAAAATTTATTTTCATATTTTTAG
Found at i:68058068 original size:2 final size:2
Alignment explanation
Indices: 68058061--68058087 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68058051 GAGACTAGTC
68058061 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
68058088 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68059583 original size:46 final size:46
Alignment explanation
Indices: 68059530--68059705 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
68059520 TATTTGGGCA
68059530 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAGCG
* * * * * *
68059576 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GGT-GCGA-GCG
* *
68059623 TCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAGCG
* *
68059668 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
68059706 CGGGTTACAT
Statistics
Matches: 107, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
44 1 0.01
45 7 0.07
46 90 0.84
47 8 0.07
48 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAGCG
Found at i:68059691 original size:92 final size:93
Alignment explanation
Indices: 68059526--68059696 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
68059516 AGGATATTTG
* * *
68059526 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68059591 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68059619 GGCATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68059683 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68059697 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 67 0.91
93 7 0.09
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68062680 original size:15 final size:15
Alignment explanation
Indices: 68062660--68062728 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
68062650 GTATCTTGGG
68062660 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
68062675 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
68062690 TTTC-CTATTCTGG-
1 TTTCTTTATTCTGGA
*
68062703 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
68062718 TTTCTTTATTC
1 TTTCTTTATTC
68062729 GGTTTCCTTG
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
13 6 0.12
14 14 0.29
15 26 0.54
16 2 0.04
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:68065179 original size:46 final size:46
Alignment explanation
Indices: 68065126--68065301 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
68065116 TATTTGGGCA
68065126 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
68065172 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
68065219 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
68065265 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68065302 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:68065281 original size:93 final size:93
Alignment explanation
Indices: 68065122--68065293 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68065112 AGGATATTTG
* *
68065122 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68065187 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68065215 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68065280 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68065294 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68075916 original size:20 final size:20
Alignment explanation
Indices: 68075891--68075930 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
68075881 GAAAGTGATT
68075891 TAATCCAAAGGTCTTTGAGA
1 TAATCCAAAGGTCTTTGAGA
68075911 TAATCCAAAGGTCTTTGAGA
1 TAATCCAAAGGTCTTTGAGA
68075931 GTTGATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
TAATCCAAAGGTCTTTGAGA
Found at i:68081090 original size:36 final size:36
Alignment explanation
Indices: 68081038--68081108 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
68081028 GTTTCGTTAA
*
68081038 GATATTTTATCGTTTGAGTGCTTAATTTGACTAGAC
1 GATACTTTATCGTTTGAGTGCTTAATTTGACTAGAC
68081074 GATACTTTATCGTTTGAGTGCTTAATTTGACTAGA
1 GATACTTTATCGTTTGAGTGCTTAATTTGACTAGA
68081109 AGGACTAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.44
Consensus pattern (36 bp):
GATACTTTATCGTTTGAGTGCTTAATTTGACTAGAC
Found at i:68083004 original size:81 final size:81
Alignment explanation
Indices: 68082869--68083030 Score: 279
Period size: 81 Copynumber: 2.0 Consensus size: 81
68082859 ACAAAGATGC
* *
68082869 GTCATCCCTTGATGTTATCACTGGTACAATTTCTCTCTATGATACTAATGTAATTGCTTTGATTG
1 GTCATCCCCTGATGTTATCACTGGTACAATTTCTCTCTATGATACTAATGTAATTGCATTGATTG
* *
68082934 ATCCTGGATTGACTCA
66 ATCCCGGATCGACTCA
*
68082950 GTCATCCCCTGATGTTATCACTGGTACATTTTCTCTCTATGATACTAATGTAATTGCATTGATTG
1 GTCATCCCCTGATGTTATCACTGGTACAATTTCTCTCTATGATACTAATGTAATTGCATTGATTG
68083015 ATCCCGGATCGACTCA
66 ATCCCGGATCGACTCA
68083031 TTCTTATATT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (81 bp):
GTCATCCCCTGATGTTATCACTGGTACAATTTCTCTCTATGATACTAATGTAATTGCATTGATTG
ATCCCGGATCGACTCA
Found at i:68089181 original size:49 final size:49
Alignment explanation
Indices: 68089104--68089313 Score: 359
Period size: 49 Copynumber: 4.3 Consensus size: 49
68089094 CCAAGTCTGT
* * *
68089104 AAATAGTA-ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAAT-GTATATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGA
*
68089153 AAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAATGTATATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGA
68089202 AAATGTATATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGA
1 AAATGTATATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGA
68089251 AAATGTATATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGA
1 AAATGTATATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGA
*
68089300 AAGTGTATATATAT
1 AAATGTATATATAT
68089314 ATGTGGTAAA
Statistics
Matches: 156, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
48 3 0.02
49 153 0.98
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
AAATGTATATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGA
Found at i:68089437 original size:37 final size:36
Alignment explanation
Indices: 68089382--68089468 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 36
68089372 AACTTGGAAA
*
68089382 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATAACTACGTGTGGAGAT
68089420 TATGTCCGGGTACGACCCGATAACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATAACTACGTGTGGAGAT
* *
68089457 TACGTCCAGGTA
1 TATGTCCGGGTA
68089469 AGACTTCGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.89
38 4 0.09
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATAACTACGTGTGGAGAT
Found at i:68097453 original size:109 final size:109
Alignment explanation
Indices: 68097262--68097505 Score: 452
Period size: 109 Copynumber: 2.2 Consensus size: 109
68097252 CAGTCTTGAG
* *
68097262 CACGGCCTAGACACACGGGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTT
1 CACGGCCTAGTCACACGAGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTT
68097327 GCCACGACCTAGACACACGGGCTTGTCTAATGCCGTGTGAGGCA
66 GCCACGACCTAGACACACGGGCTTGTCTAATGCCGTGTGAGGCA
68097371 CACGGCCTAGTCACACGAGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTT
1 CACGGCCTAGTCACACGAGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTT
* *
68097436 GCCACGGCCTAGACACACGGGTTTGTCTAATGCCGTGTGAGGCA
66 GCCACGACCTAGACACACGGGCTTGTCTAATGCCGTGTGAGGCA
68097480 CACGGCCTAGTCACACGAGCGTGTCT
1 CACGGCCTAGTCACACGAGCGTGTCT
68097506 AATGCCGTGT
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 131 1.00
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.27
Consensus pattern (109 bp):
CACGGCCTAGTCACACGAGCGTGTCTTGTGGCCATGTGGTTAAGTCTGTATGTATGCCCTATTTT
GCCACGACCTAGACACACGGGCTTGTCTAATGCCGTGTGAGGCA
Found at i:68097485 original size:42 final size:42
Alignment explanation
Indices: 68097438--68097545 Score: 180
Period size: 42 Copynumber: 2.6 Consensus size: 42
68097428 CCTATTTTGC
* **
68097438 CACGGCCTAGACACACGGGTTTGTCTAATGCCGTGTGAGGCA
1 CACGGCCTAGTCACACGGGCGTGTCTAATGCCGTGTGAGGCA
*
68097480 CACGGCCTAGTCACACGAGCGTGTCTAATGCCGTGTGAGGCA
1 CACGGCCTAGTCACACGGGCGTGTCTAATGCCGTGTGAGGCA
68097522 CACGGCCTAGTCACACGGGCGTGT
1 CACGGCCTAGTCACACGGGCGTGT
68097546 GACCTTTGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.19
Consensus pattern (42 bp):
CACGGCCTAGTCACACGGGCGTGTCTAATGCCGTGTGAGGCA
Found at i:68105049 original size:17 final size:16
Alignment explanation
Indices: 68105023--68105054 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
68105013 TGTAAAAGTT
68105023 GGGTTCTAATAGCTAA
1 GGGTTCTAATAGCTAA
68105039 GGGTGTCTAATAGCTA
1 GGGT-TCTAATAGCTA
68105055 TGAAACTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.31
Consensus pattern (16 bp):
GGGTTCTAATAGCTAA
Found at i:68108235 original size:19 final size:19
Alignment explanation
Indices: 68108203--68108250 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
68108193 ACTTGGGTTG
* *
68108203 AGAATTGGCCAAATGGGCC
1 AGAATGGGCTAAATGGGCC
68108222 AGAATGGGCTAAATGGGCC
1 AGAATGGGCTAAATGGGCC
68108241 AGAATGGGCT
1 AGAATGGGCT
68108251 GTTGGGCCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.31, C:0.17, G:0.35, T:0.17
Consensus pattern (19 bp):
AGAATGGGCTAAATGGGCC
Found at i:68108236 original size:9 final size:10
Alignment explanation
Indices: 68108203--68108249 Score: 62
Period size: 9 Copynumber: 4.9 Consensus size: 10
68108193 ACTTGGGTTG
*
68108203 AGAATTGGCC
1 AGAATGGGCC
68108213 A-AATGGGCC
1 AGAATGGGCC
*
68108222 AGAATGGGCT
1 AGAATGGGCC
68108232 A-AATGGGCC
1 AGAATGGGCC
68108241 AGAATGGGC
1 AGAATGGGC
68108250 TGTTGGGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 16 0.50
10 16 0.50
ACGTcount: A:0.32, C:0.17, G:0.36, T:0.15
Consensus pattern (10 bp):
AGAATGGGCC
Found at i:68108389 original size:29 final size:29
Alignment explanation
Indices: 68108324--68108431 Score: 107
Period size: 28 Copynumber: 3.8 Consensus size: 29
68108314 GCATGAGTAT
* *
68108324 AATATGATTTGGGCCTAATGGGCCATATA-
1 AATATGAATTGGGCCTAGTGGGCCATA-AG
**
68108353 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATAAG
**
68108382 AATATGAA-TGGGCC-AGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATAAG
*
68108410 AATAAG-ATTGGGCCTAGTGGGC
1 AATATGAATTGGGCCTAGTGGGC
68108432 TATATGCATG
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
27 3 0.05
28 32 0.48
29 31 0.47
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATAAG
Found at i:68115727 original size:16 final size:16
Alignment explanation
Indices: 68115702--68115752 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
68115692 ATGAATCGGC
* *
68115702 AAAAGCCGAAATGTTG
1 AAAAGCCGAAAAGCTG
*
68115718 AAAAGTCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
68115734 AAAAGCCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
68115750 AAA
1 AAA
68115753 TATCGAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.51, C:0.14, G:0.24, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAAAGCTG
Found at i:68115759 original size:16 final size:16
Alignment explanation
Indices: 68115702--68115761 Score: 68
Period size: 16 Copynumber: 3.8 Consensus size: 16
68115692 ATGAATCGGC
* * *
68115702 AAAAGCCGAAATGTTG
1 AAAAGTCGAAAAGCTG
68115718 AAAAGTCGAAAAGCTG
1 AAAAGTCGAAAAGCTG
*
68115734 AAAAGCCGAAAAGCTG
1 AAAAGTCGAAAAGCTG
68115750 AAATA-TCGAAAA
1 AAA-AGTCGAAAA
68115762 ATCGAAAGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
16 37 0.97
17 1 0.03
ACGTcount: A:0.52, C:0.13, G:0.22, T:0.13
Consensus pattern (16 bp):
AAAAGTCGAAAAGCTG
Found at i:68116049 original size:29 final size:29
Alignment explanation
Indices: 68115984--68116092 Score: 98
Period size: 29 Copynumber: 3.8 Consensus size: 29
68115974 GCATGAGTAT
* *
68115984 AATATGATTTGGGCCTAATGGGCCATATA-
1 AATATGAATTGGGCCTAGTGGGCCATA-AG
**
68116013 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATAAG
* * **
68116042 AATATGAACTAGGCC-AGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATAAG
*
68116071 AATAAG-ATTGGGCCTAGTGGGC
1 AATATGAATTGGGCCTAGTGGGC
68116093 TATATGCATG
Statistics
Matches: 64, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
28 14 0.22
29 50 0.78
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATAAG
Found at i:68119155 original size:29 final size:29
Alignment explanation
Indices: 68119116--68119194 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
68119106 CTTAATAATC
*
68119116 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
68119146 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
68119175 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68119195 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:68122316 original size:40 final size:40
Alignment explanation
Indices: 68122222--68122366 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
68122212 TACTCGAATG
*
68122222 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
68122263 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
68122303 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
68122343 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
68122367 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:68127469 original size:42 final size:42
Alignment explanation
Indices: 68127355--68127516 Score: 186
Period size: 42 Copynumber: 3.8 Consensus size: 42
68127345 CACATGGTAC
* * *
68127355 CATA-CAATTGCCATATCCCAGATATGGTCATACA-TAGGATCT
1 CATATCAA-TGCCATATCCCAGATATGGTCTTACACGAAG-TCT
* * * * *
68127397 CGTATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAGTAT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAAGTCT
68127440 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAGTCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAGTCT
*
68127482 CATAT-AGATGCCATATCCCAGATATAGTCTTACAC
1 CATATCA-ATGCCATATCCCAGATATGGTCTTACAC
68127517 ATTATCTTAG
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
41 1 0.01
42 66 0.65
43 33 0.32
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAGTCT
Found at i:68127492 original size:85 final size:84
Alignment explanation
Indices: 68127355--68127516 Score: 211
Period size: 85 Copynumber: 1.9 Consensus size: 84
68127345 CACATGGTAC
* * * * *
68127355 CATACAATTGCCATATCCCAGATATGGTCATACATAGGATCTCGTATCGATGCCAATAGCCCAGC
1 CATACAATTGCCATATCCCAGATATGGTCATACAGAAGATCTCATATAGATGCC-ATAGCCCAGA
*
68127420 TATGGTCTTACACGAAGTAT
65 TATAGTCTTACACGAAGTAT
* *
68127440 CATATCAA-TGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATAGATGCCATATCCCAG
1 CATA-CAATTGCCATATCCCAGATATGGTCATACA-GAAGATCTCATATAGATGCCATAGCCCAG
68127503 ATATAGTCTTACAC
64 ATATAGTCTTACAC
68127517 ATTATCTTAG
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
84 20 0.30
85 42 0.63
86 5 0.07
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (84 bp):
CATACAATTGCCATATCCCAGATATGGTCATACAGAAGATCTCATATAGATGCCATAGCCCAGAT
ATAGTCTTACACGAAGTAT
Found at i:68133655 original size:42 final size:44
Alignment explanation
Indices: 68133551--68133671 Score: 158
Period size: 44 Copynumber: 2.8 Consensus size: 44
68133541 TGTGTTATCA
* *
68133551 TGTAAGACCATGTTTGGGACGTTGGCATTG-ATTTGTGATTTACG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTA-TTGTGATTTACG
68133595 TGTAAGACCATGTTTGGGACATTGGCATCGTATT-TGATTT-CG
1 TGTAAGACCATGTTTGGGACATTGGCATCGTATTGTGATTTACG
* * *
68133637 TGTAAGACCTTGTCTGGGACAGTGGCATCGATATT
1 TGTAAGACCATGTTTGGGACATTGGCATCG-TATT
68133672 CTAAATGGTT
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
42 29 0.41
43 10 0.14
44 30 0.43
45 1 0.01
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.36
Consensus pattern (44 bp):
TGTAAGACCATGTTTGGGACATTGGCATCGTATTGTGATTTACG
Found at i:68134600 original size:16 final size:16
Alignment explanation
Indices: 68134579--68134609 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
68134569 TTTTGATTTG
68134579 ATATATATATATGGCT
1 ATATATATATATGGCT
68134595 ATATATATATATGGC
1 ATATATATATATGGC
68134610 CAAGTGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (16 bp):
ATATATATATATGGCT
Found at i:68136316 original size:10 final size:10
Alignment explanation
Indices: 68136301--68136360 Score: 95
Period size: 10 Copynumber: 6.0 Consensus size: 10
68136291 TTATTTTAGG
68136301 ATTTAT-TTT
1 ATTTATCTTT
68136310 CATTTATCTTT
1 -ATTTATCTTT
68136321 ATTTATCTTT
1 ATTTATCTTT
68136331 ATTTATCTTT
1 ATTTATCTTT
*
68136341 ATTTATTTTT
1 ATTTATCTTT
68136351 ATTTATCTTT
1 ATTTATCTTT
68136361 TAGAATTTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
10 44 0.94
11 3 0.06
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:68142390 original size:40 final size:40
Alignment explanation
Indices: 68142316--68142537 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
68142306 AACCCAAGTA
* *
68142316 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
68142355 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
68142395 CCTTCGAGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68142435 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68142475 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68142515 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68142538 CATTCGAATA
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 158 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68146075 original size:23 final size:24
Alignment explanation
Indices: 68146037--68146084 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
68146027 TAATTTTTAA
68146037 TTTTATTTCTATCTTT-TATTATT
1 TTTTATTTCTATCTTTGTATTATT
*
68146060 TTTTATTTCT-TACTTTGTTTTATT
1 TTTTATTTCTAT-CTTTGTATTATT
68146084 T
1 T
68146085 CATTTTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 14 0.64
24 7 0.32
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTTATTTCTATCTTTGTATTATT
Found at i:68149593 original size:10 final size:10
Alignment explanation
Indices: 68149578--68149629 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
68149568 TTATTTTAGG
68149578 ATTTATTTTT
1 ATTTATTTTT
*
68149588 ATTTATCTTT
1 ATTTATTTTT
* *
68149598 AATTATCTTT
1 ATTTATTTTT
*
68149608 ATTTATTTAT
1 ATTTATTTTT
68149618 ATTTATCTTTT
1 ATTTAT-TTTT
68149629 A
1 A
68149630 GAATTTCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:68150564 original size:12 final size:12
Alignment explanation
Indices: 68150547--68150579 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
68150537 CTACTTCCCC
68150547 TTTACTATTATT
1 TTTACTATTATT
68150559 TTTACTATTATT
1 TTTACTATTATT
68150571 TTTACTATT
1 TTTACTATT
68150580 TTGCAGGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:68154067 original size:8 final size:8
Alignment explanation
Indices: 68154025--68154049 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
68154015 ATATAGACTA
68154025 AATAAAAT
1 AATAAAAT
68154033 AATAAAAT
1 AATAAAAT
68154041 AATAAAAT
1 AATAAAAT
68154049 A
1 A
68154050 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:68154073 original size:29 final size:31
Alignment explanation
Indices: 68154022--68154090 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
68154012 TATATATAGA
*
68154022 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
68154051 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
68154082 CTAATTAAA
1 CTAATTAAA
68154091 TAACTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:68154371 original size:30 final size:31
Alignment explanation
Indices: 68154303--68154361 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
68154293 CACCCTTAAA
* *
68154303 ATATTTGCACTATTAATCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
68154334 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
68154362 GAGTATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:68158130 original size:40 final size:40
Alignment explanation
Indices: 68158068--68158285 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
68158058 AAGCCAAGTA
* * * *
68158068 CCTTCGGGATTTA-TCCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
68158107 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68158147 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68158187 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * **
68158227 CCTTCGGGACTTATCCCGGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
68158267 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68158286 TTATCATCCA
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 148 0.92
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68166416 original size:40 final size:40
Alignment explanation
Indices: 68166354--68166571 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 40
68166344 AAGCCAAGTA
* * * * *
68166354 CCTTCGGGATTTA-ACCGGATATAGCT-AGTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
68166393 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68166433 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68166473 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * * **
68166513 CCTTCGGGACTTATCCTTGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
68166553 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68166572 TTATCATCCA
Statistics
Matches: 154, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 13 0.08
40 141 0.92
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68168645 original size:16 final size:15
Alignment explanation
Indices: 68168624--68168653 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
68168614 TACCGAGGGT
68168624 TCATCACATAATGAGC
1 TCATCACAT-ATGAGC
68168640 TCATCACATATGAG
1 TCATCACATATGAG
68168654 TTTTTAGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (15 bp):
TCATCACATATGAGC
Found at i:68168901 original size:42 final size:42
Alignment explanation
Indices: 68168851--68168944 Score: 136
Period size: 42 Copynumber: 2.2 Consensus size: 42
68168841 CCCAACTATA
*
68168851 GTCTTACACAAAGTCTCATATCGATGCCATAT-CCAGAATATG
1 GTCTTACACAAAGTCTCATATAGATGCCATATCCCAG-ATATG
* * *
68168893 GTCTTACACGAAGTCTTATATAGATGTCATATCCCAGATATG
1 GTCTTACACAAAGTCTCATATAGATGCCATATCCCAGATATG
68168935 GTCTTACACA
1 GTCTTACACA
68168945 TAGCCTTAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 42 0.91
43 4 0.09
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (42 bp):
GTCTTACACAAAGTCTCATATAGATGCCATATCCCAGATATG
Found at i:68171789 original size:46 final size:46
Alignment explanation
Indices: 68171739--68171914 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
68171729 TGGTAGAGCA
68171739 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68171785 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
68171830 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68171878 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68171915 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68171895 original size:93 final size:93
Alignment explanation
Indices: 68171736--68171907 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
68171726 GGATGGTAGA
* * *
68171736 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
68171801 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68171829 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
68171894 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
68171908 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68173820 original size:40 final size:40
Alignment explanation
Indices: 68173628--68173813 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
68173618 TCGAATGATG
* * *
68173628 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
68173668 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68173708 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68173748 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68173789 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68173814 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68179649 original size:29 final size:29
Alignment explanation
Indices: 68179616--68179689 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
68179606 GTGACGAGAT
68179616 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68179645 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
68179674 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68179690 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68179705 original size:29 final size:29
Alignment explanation
Indices: 68179673--68179747 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
68179663 CTGGAAATAT
* *
68179673 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
68179702 ATGGCACT-TGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
68179730 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
68179748 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 22 0.59
29 15 0.41
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.23
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:68185010 original size:93 final size:93
Alignment explanation
Indices: 68184851--68185021 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
68184841 GCCCATAAGT
* *
68184851 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68184916 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
68184944 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68185009 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68185022 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68185018 original size:46 final size:46
Alignment explanation
Indices: 68184843--68185018 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
68184833 TGTAACCCGC
* * *
68184843 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
68184889 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
68184939 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
68184982 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68185019 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.