Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 234 of 345
Found at i:68596833 original size:49 final size:49
Alignment explanation
Indices: 68596778--68597316 Score: 927
Period size: 49 Copynumber: 11.2 Consensus size: 49
68596768 TGTATGAGTA
*
68596778 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
68596827 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
68596876 TATATATGTGATAAGGCCTAATGG-C--C--GA--AATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
68596918 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
68596967 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
68597016 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
68597065 TATATAT-TGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
68597113 TATATATGTGGTAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
68597162 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
68597211 TATATATGTGATAAGGCCTAATGGCCGACGTGAAGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
68597260 TATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
68597307 TATATATGTG
1 TATATATGTG
68597317 TGACAGCCCA
Statistics
Matches: 468, Mismatches: 14, Indels: 18
0.94 0.03 0.04
Matches are distributed among these distances:
42 37 0.08
43 1 0.00
44 2 0.00
46 1 0.00
47 13 0.03
48 52 0.11
49 362 0.77
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
Found at i:68597205 original size:195 final size:196
Alignment explanation
Indices: 68596778--68597316 Score: 945
Period size: 195 Copynumber: 2.8 Consensus size: 196
68596768 TGTATGAGTA
68596778 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
68596843 CCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-C--C--G
66 CCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTG
*
68596903 A--AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
131 ATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
68596966 G
196 G
68596967 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
68597032 CCTAATGGCCGACGTGATGAATGTGAAAGTGTGTATATAT-TGATAAGGCCTAATGGCCGACGTG
66 CCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTG
*
68597096 ATGAATGTGAAAGTGTGTATATATGTGGTAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
131 ATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
68597161 G
196 G
*
68597162 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* * *
68597227 CCTAATGGCCGACGTGAAGAATGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTG
68597292 ATGAATGTG-AAG-GTGTATATATGTG
131 ATGAATGTGAAAGTGTGTATATATGTG
68597317 TGACAGCCCA
Statistics
Matches: 334, Mismatches: 8, Indels: 11
0.95 0.02 0.03
Matches are distributed among these distances:
188 16 0.05
189 105 0.31
191 1 0.00
193 2 0.01
194 13 0.04
195 165 0.49
196 32 0.10
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (196 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTG
ATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
G
Found at i:68598998 original size:39 final size:40
Alignment explanation
Indices: 68598951--68599094 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
68598941 AATGTTCGAG
68598951 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
68598990 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* ** *
68599029 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
68599069 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
68599095 GTTTGAACGA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:68603582 original size:39 final size:37
Alignment explanation
Indices: 68603447--68603586 Score: 140
Period size: 37 Copynumber: 3.7 Consensus size: 37
68603437 CCGCACCAAG
* * * *
68603447 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-AC-ACTAGCAC-AAT
* * *
68603487 GCCTTCGGGTCTTAGCCCGGATA-AAACTCGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATATACACTAGCAC-AAT
*
68603524 GCCTTCGGGTCTTAGCCCGGATATAGCACTAGCACAATT
1 GCCTTCGGGTCTTAACCCGGATATA-CACTAGCACAA-T
68603563 GCCTTCGGGTCTTAACCCGG-TATA
1 GCCTTCGGGTCTTAACCCGGATATA
68603587 ATTTCCAGCA
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
37 32 0.37
38 8 0.09
39 27 0.31
40 20 0.23
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (37 bp):
GCCTTCGGGTCTTAACCCGGATATACACTAGCACAAT
Found at i:68603602 original size:39 final size:39
Alignment explanation
Indices: 68603479--68603625 Score: 151
Period size: 39 Copynumber: 3.8 Consensus size: 39
68603469 ATCACGATTT
* * *
68603479 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-A-AACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCACTA
68603516 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCACTA
* **
68603555 GCACAATTGCCTTCGGGTCTTAACCCGGTATAATTTC-C-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGG-AT-ATAGCACTA
* * *
68603594 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
68603626 CATTCAATTT
Statistics
Matches: 95, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
37 30 0.32
38 7 0.07
39 52 0.55
40 3 0.03
41 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCACTA
Found at i:68611670 original size:77 final size:79
Alignment explanation
Indices: 68611582--68611729 Score: 203
Period size: 77 Copynumber: 1.9 Consensus size: 79
68611572 ATCACGATTT
* *
68611582 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAACTTGCA-C-GAA-TGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAA-TTGCAGCAGAATTGCCTTCGGGGCTTAGCC
68611644 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * * * *
68611659 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCAGCATAATTGTCTTCGGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATTGCAGCAGAATTGCCTTCGGGGCTTAGCCC
68611724 GGATAT
66 GGATAT
68611730 CATTCAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
76 4 0.07
77 32 0.52
78 2 0.03
79 23 0.38
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATTGCAGCAGAATTGCCTTCGGGGCTTAGCCC
GGATATAGCCACTA
Found at i:68611725 original size:39 final size:40
Alignment explanation
Indices: 68611550--68611729 Score: 163
Period size: 40 Copynumber: 4.6 Consensus size: 40
68611540 CCGCACCAAG
* * * * * * * *
68611550 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACAATT
*
68611590 GCCTTCGGGTCTTAGCCCGGATA-AA--ACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCAC-AATT
*
68611627 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACAATT
* *** *
68611667 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACAATT
* *
68611706 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
68611730 CATTCAATTT
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
37 31 0.26
38 3 0.03
39 32 0.27
40 53 0.45
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACAATT
Found at i:68623916 original size:28 final size:28
Alignment explanation
Indices: 68623853--68623921 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
68623843 TTTAAAACCC
*
68623853 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
* *
68623880 TAAGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
68623908 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
68623922 TGATCTACGC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 6 0.16
28 31 0.84
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:68625774 original size:19 final size:18
Alignment explanation
Indices: 68625737--68625780 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
68625727 ATACATACAG
68625737 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
68625754 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
68625773 TACTAATT
1 TAATAATT
68625781 AAAATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:68628268 original size:28 final size:28
Alignment explanation
Indices: 68628228--68628297 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
68628218 GCAATCAAAT
* *
68628228 ATGGTACTCAGTGTACGAAATATTGAAA
1 ATGGCACTTAGTGTACGAAATATTGAAA
* * *
68628256 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAAA
*
68628284 ATGACACTTAGTGT
1 ATGGCACTTAGTGT
68628298 GCAATCAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAAA
Found at i:68628298 original size:28 final size:28
Alignment explanation
Indices: 68628237--68628299 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
68628227 TATGGTACTC
* *
68628237 AGTGTACGAAATATTGAAAATGGCACTT
1 AGTGTGCGAAATATTGAAAATGACACTT
* *
68628265 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAAAATGACACTT
68628293 AGTGTGC
1 AGTGTGC
68628300 AATCAAATGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAAAATGACACTT
Found at i:68628515 original size:43 final size:43
Alignment explanation
Indices: 68628414--68628542 Score: 129
Period size: 44 Copynumber: 3.0 Consensus size: 43
68628404 TTTATAATGG
* * * *
68628414 TGATATTCGGGCTTTGAGCCTAGCAAGCTTTAA-GCTGGTGAATAA
1 TGATA-TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTG-A-AA
*
68628459 T-ATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
68628502 TGATATCGGGCTTCAAGCCTAGCAGGC-AAAATGCCGATGAA
1 TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
68628543 TGAGTTCAGA
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
42 12 0.17
43 25 0.35
44 26 0.36
45 9 0.12
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (43 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:68638305 original size:28 final size:28
Alignment explanation
Indices: 68638273--68638343 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
68638263 AATGAGATTG
68638273 GCACTAAGTGTGCGGGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGGGTTTGAATAT-TA-A
* *
68638301 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGGGTTTGAATATTAA
68638329 GCACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
68638344 ACTTACTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 33 0.87
29 4 0.11
30 1 0.03
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGGGTTTGAATATTAA
Found at i:68642543 original size:29 final size:28
Alignment explanation
Indices: 68642510--68642610 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
68642500 ATAGTGAATC
*
68642510 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-A-TCAAACT
*
68642539 CGCACACTTAGTTCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
68642567 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
68642597 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68642611 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 22 0.35
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68642577 original size:28 final size:29
Alignment explanation
Indices: 68642510--68642581 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
68642500 ATAGTGAATC
*
68642510 CGCACACTTAGTGCTATATACATTCAGCT
1 CGCACACTTAGTGCTATATACATTCAACT
*
68642539 CGCACACTTAGTTCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATACATTC-AACT
68642567 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68642582 GTACAATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.46
29 19 0.49
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATACATTCAACT
Found at i:68645034 original size:29 final size:29
Alignment explanation
Indices: 68645001--68645073 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
68644991 GTGACGAGAT
68645001 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
68645030 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
68645059 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
68645074 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:68645089 original size:29 final size:30
Alignment explanation
Indices: 68645001--68645133 Score: 141
Period size: 29 Copynumber: 4.6 Consensus size: 30
68644991 GTGACGAGAT
68645001 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
68645030 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* ***
68645059 TGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* * * **
68645088 TGGCACTATGTGTGCG-GGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGATGCTGGAAAT-ATA
68645117 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
68645134 AATCGAGTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
28 2 0.02
29 87 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGATGCTGGAAATATA
Found at i:68652742 original size:29 final size:29
Alignment explanation
Indices: 68652709--68652781 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
68652699 GTGACGAGAT
68652709 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
68652738 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
68652767 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
68652782 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:68652797 original size:29 final size:30
Alignment explanation
Indices: 68652709--68652841 Score: 141
Period size: 29 Copynumber: 4.6 Consensus size: 30
68652699 GTGACGAGAT
68652709 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
68652738 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* ***
68652767 TGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* * * **
68652796 TGGCACTATGTGTGCG-GGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGATGCTGGAAAT-ATA
68652825 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
68652842 AATCGAGTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
28 2 0.02
29 87 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGATGCTGGAAATATA
Found at i:68654249 original size:40 final size:40
Alignment explanation
Indices: 68654204--68654370 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
68654194 CGGAATATAA
68654204 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68654244 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
68654284 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68654324 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68654363 CCGGATAT
1 CCGGATAT
68654371 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68654354 original size:80 final size:79
Alignment explanation
Indices: 68654204--68654370 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
68654194 CGGAATATAA
* *
68654204 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
68654269 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
68654284 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
68654346 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
68654363 CCGGATAT
1 CCGGATAT
68654371 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:68655218 original size:17 final size:19
Alignment explanation
Indices: 68655195--68655240 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
68655185 AAGAAGCATG
68655195 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
68655213 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
68655231 AATCATGCTC
1 AATCATGCTC
68655241 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:68662253 original size:40 final size:40
Alignment explanation
Indices: 68662208--68662374 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
68662198 CGGAATATAA
68662208 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68662248 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
68662288 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68662328 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68662367 CCGGATAT
1 CCGGATAT
68662375 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68662358 original size:80 final size:79
Alignment explanation
Indices: 68662208--68662374 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
68662198 CGGAATATAA
* *
68662208 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
68662273 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
68662288 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
68662350 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
68662367 CCGGATAT
1 CCGGATAT
68662375 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:68663223 original size:17 final size:19
Alignment explanation
Indices: 68663200--68663245 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
68663190 AAGAAGCATG
68663200 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
68663218 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
68663236 AATCATGCTC
1 AATCATGCTC
68663246 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:68672038 original size:24 final size:24
Alignment explanation
Indices: 68672006--68672092 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
68671996 AATCTCAAAT
68672006 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
68672030 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
68672054 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
68672078 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
68672093 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:68672058 original size:48 final size:48
Alignment explanation
Indices: 68672006--68672114 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
68671996 AATCTCAAAT
** *
68672006 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
68672054 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
68672102 GCACTATGTGTGC
1 GCACTATGTGTGC
68672115 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:68672105 original size:24 final size:24
Alignment explanation
Indices: 68672006--68672114 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
68671996 AATCTCAAAT
*
68672006 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
68672030 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
68672054 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
68672078 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
68672102 GCACTATGTGTGC
1 GCACTATGTGTGC
68672115 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:68679176 original size:24 final size:24
Alignment explanation
Indices: 68679144--68679230 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
68679134 AATCTCAAAT
68679144 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
68679168 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
68679192 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
68679216 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
68679231 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:68679196 original size:48 final size:48
Alignment explanation
Indices: 68679144--68679252 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
68679134 AATCTCAAAT
** *
68679144 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
68679192 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
68679240 GCACTATGTGTGC
1 GCACTATGTGTGC
68679253 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:68679243 original size:24 final size:24
Alignment explanation
Indices: 68679144--68679252 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
68679134 AATCTCAAAT
*
68679144 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
68679168 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
68679192 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
68679216 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
68679240 GCACTATGTGTGC
1 GCACTATGTGTGC
68679253 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:68687828 original size:31 final size:31
Alignment explanation
Indices: 68687790--68687865 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
68687780 TCATAAAGTA
68687790 TCACACGCCCGTGTAAGTGGGCCGTGTAGAC
1 TCACACGCCCGTGTAAGTGGGCCGTGTAGAC
* *
68687821 TCACACGCCCGTGTAAGTGGGTCGTGTGGAC
1 TCACACGCCCGTGTAAGTGGGCCGTGTAGAC
68687852 TCACACGCCCGTGT
1 TCACACGCCCGTGT
68687866 GACTTGTGGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (31 bp):
TCACACGCCCGTGTAAGTGGGCCGTGTAGAC
Found at i:68695577 original size:55 final size:55
Alignment explanation
Indices: 68695517--68695637 Score: 129
Period size: 55 Copynumber: 2.2 Consensus size: 55
68695507 TGCCCTTCAG
68695517 CCGTGGGCAACACTGACTTATCAACACGGCCATGGCA-CACACCCGTGCT-GCCTAC
1 CCGTGGGCAACACTGACTTATCAACACGGCCATGG-AGCACACCCGTG-TGGCCTAC
* * * * * * * *
68695572 TCGTGGACGACATTGTCTTTTTAACACGGCCATGGAGCACGCCCGTGTGGCCTAC
1 CCGTGGGCAACACTGACTTATCAACACGGCCATGGAGCACACCCGTGTGGCCTAC
*
68695627 CCGTGTGCAAC
1 CCGTGGGCAAC
68695638 TTTGAGCTAA
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
54 2 0.04
55 50 0.96
ACGTcount: A:0.21, C:0.34, G:0.25, T:0.21
Consensus pattern (55 bp):
CCGTGGGCAACACTGACTTATCAACACGGCCATGGAGCACACCCGTGTGGCCTAC
Found at i:68698081 original size:2 final size:2
Alignment explanation
Indices: 68698074--68698098 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
68698064 TGTTACATTT
68698074 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
68698099 TTTTGGTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:68701753 original size:48 final size:49
Alignment explanation
Indices: 68701649--68701818 Score: 222
Period size: 49 Copynumber: 3.5 Consensus size: 49
68701639 AGGTGTGTAT
68701649 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCA
* * * * *
68701698 GTATAAGATCTGTCTGGG-CATGGCATCAGC-CTTGATATA-TG-GAAGTCA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACAC-AGATA-AGTGAG-AGCCA
* *
68701746 GTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGATCCA
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCA
68701795 GTGTAAGACCTGTCTGGGACATGG
1 GTGTAAGACCTGTCTGGGACATGG
68701819 TATTGGCCTC
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
47 2 0.02
48 38 0.37
49 60 0.59
50 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (49 bp):
GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCA
Found at i:68701762 original size:97 final size:98
Alignment explanation
Indices: 68701649--68701922 Score: 302
Period size: 97 Copynumber: 2.8 Consensus size: 98
68701639 AGGTGTGTAT
*
68701649 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCAGTATAAGATCTGTCTG
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCAGTATAAGACCTGTCTG
* *
68701714 GG-CATGGCATCAGCCTTGATATATGGAAGTCA
66 GGACATGGCATCAGCCTCGATACATGGAAGTCA
* * *
68701746 GTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGATCCAGTGTAAGACCTGTCTG
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCAGTATAAGACCTGTCTG
* ** *
68701811 GGACATGGTATTGGCCTCGATGCATGGAAGTCA
66 GGACATGGCATCAGCCTCGATACATGGAAGTCA
* * * * * ** ** * * *
68701844 ATTTAATACTTGTTTGGGACATGGCATTGACTTAGAT--GTGAGAGCCAGTGTAAAACCATGTTT
1 GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCAGTATAAGACC-TGTCT
* *
68701907 GGAACATGGGATCAGC
65 GGGACATGGCATCAGC
68701923 ATTGTACCCT
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
96 18 0.12
97 79 0.53
98 53 0.35
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (98 bp):
GTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAAGTGAGAGCCAGTATAAGACCTGTCTG
GGACATGGCATCAGCCTCGATACATGGAAGTCA
Found at i:68706459 original size:20 final size:21
Alignment explanation
Indices: 68706420--68706459 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
68706410 GTCATGTGAG
* *
68706420 CCACACGGGCATATTGCCCTT
1 CCACACGGACATAGTGCCCTT
68706441 CCACACGGACAT-GTGCCCT
1 CCACACGGACATAGTGCCCT
68706460 ATTTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (21 bp):
CCACACGGACATAGTGCCCTT
Found at i:68709013 original size:40 final size:39
Alignment explanation
Indices: 68708969--68709186 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 39
68708959 TCATTCAATC
* *
68708969 GCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCACAAAT
* *
68709009 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAAT
* *
68709049 GCCTTCGGGACTTAACCCGGATTTAGGAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAAT
*
68709089 GCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAAT
* * *
68709127 GCCTTC-GGATCTTAGTCCGGTTATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGTT-TAGTAAC-TCGCACAAAT
68709167 GCCTTCGGGACTTAGCCCGG
1 GCCTTCGGGACTTAGCCCGG
68709187 ACATCATTCG
Statistics
Matches: 160, Mismatches: 12, Indels: 12
0.87 0.07 0.07
Matches are distributed among these distances:
37 2 0.01
38 23 0.14
39 19 0.12
40 103 0.64
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAAT
Found at i:68709171 original size:78 final size:80
Alignment explanation
Indices: 68708969--68709187 Score: 286
Period size: 78 Copynumber: 2.8 Consensus size: 80
68708959 TCATTCAATC
* * * *
68708969 GCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
*
68709034 GTAACTCGCATAAAT
66 GTAACTCGCACAAAT
*
68709049 GCCTTCGGGACTTAACCCGGATT-TAGGAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-TT
1 GCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTT
68709111 AGTAACTCGCACAAAT
65 AGTAACTCGCACAAAT
** * *
68709127 GCCTTC-GGATCTTAGTCCGGTTATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGA-CTTAACCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
68709188 CATCATTCGA
Statistics
Matches: 123, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
77 5 0.04
78 45 0.37
79 29 0.24
80 42 0.34
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
GTAACTCGCACAAAT
Found at i:68709171 original size:118 final size:120
Alignment explanation
Indices: 68708969--68709187 Score: 295
Period size: 118 Copynumber: 1.8 Consensus size: 120
68708959 TCATTCAATC
* *
68708969 GCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
* *
68709034 GTAACTCGCATAAATGCCTTCGGGACTTAACCCGGATTTAGGAACTCGCACAAAT
66 GTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGGAACTCGCACAAAT
* **
68709089 GCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG-TTA
1 GCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATT-
* *
68709150 TAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 TAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
68709188 CATCATTCGA
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
117 5 0.06
118 56 0.64
119 17 0.20
120 9 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
GCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
GTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGGAACTCGCACAAAT
Found at i:68717321 original size:116 final size:118
Alignment explanation
Indices: 68717140--68717361 Score: 308
Period size: 116 Copynumber: 1.9 Consensus size: 118
68717130 GCTACTCGTT
* *
68717140 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
68717205 ATTTAGTAAC-TCGCATAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCA
* **
68717258 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
68717320 GATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
68717362 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
115 3 0.03
116 58 0.63
117 17 0.18
118 14 0.15
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCA
Found at i:68717361 original size:40 final size:40
Alignment explanation
Indices: 68717121--68717361 Score: 289
Period size: 40 Copynumber: 6.1 Consensus size: 40
68717111 CGGAATTTAA
** *
68717121 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
68717161 CCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
68717201 CCGGATTTAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
68717241 CCGGATTTAGTAACT--CACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
68717278 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
68717317 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68717357 CCGGA
1 CCGGA
68717362 CATCATTCGA
Statistics
Matches: 179, Mismatches: 14, Indels: 16
0.86 0.07 0.08
Matches are distributed among these distances:
36 8 0.04
37 13 0.07
38 28 0.16
39 12 0.07
40 107 0.60
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:68724353 original size:46 final size:46
Alignment explanation
Indices: 68724274--68724361 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
68724264 CATTGGGTGG
*
68724274 TATGCGAGACAGTGTAACACATGTCTGGCACATGCATCGGCCATGT
1 TATGAGAGACAGTGTAACACATGTCTGGCACATGCATCGGCCATGT
* * *
68724320 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 TATGAGAGACAGTGTAACACATGTCTGGCACATGCATCGGCC
68724362 TCAGGATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (46 bp):
TATGAGAGACAGTGTAACACATGTCTGGCACATGCATCGGCCATGT
Found at i:68724509 original size:49 final size:49
Alignment explanation
Indices: 68724421--68724548 Score: 154
Period size: 49 Copynumber: 2.6 Consensus size: 49
68724411 TATTGTGTGT
*
68724421 CAGTGTAAGA-CTAGTCTAGGACATGGCATCGACACCGATAAATGAGAGC
1 CAGTGTAAGACCTA-TCTAGGACATGGCATCGACACCGATAAATGAAAGC
* *
68724470 CAGTGTAAGACCTATCTAGGACATGGCATC-AGC-CTCGATATATGAAAGT
1 CAGTGTAAGACCTATCTAGGACATGGCATCGA-CAC-CGATAAATGAAAGC
* * *
68724519 CAATGTAAGACCTATCTGGGACACGGCATC
1 CAGTGTAAGACCTATCTAGGACATGGCATC
68724549 TGTAACACCC
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
48 2 0.03
49 65 0.93
50 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTAGGACATGGCATCGACACCGATAAATGAAAGC
Found at i:68725606 original size:22 final size:22
Alignment explanation
Indices: 68725578--68725655 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
68725568 ACTTTCACAT
68725578 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGGCC
** * * *
68725600 TTATCACATATATACACTTTC-ACA
1 TTATCACAT-T-GGC-CATTCGGCC
68725624 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
68725647 TTATCACAT
1 TTATCACAT
68725656 ATATACACTT
Statistics
Matches: 41, Mismatches: 10, Indels: 10
0.67 0.16 0.16
Matches are distributed among these distances:
22 20 0.49
23 5 0.12
24 5 0.12
25 11 0.27
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGGCC
Found at i:68725773 original size:49 final size:49
Alignment explanation
Indices: 68725505--68726013 Score: 767
Period size: 47 Copynumber: 10.7 Consensus size: 49
68725495 CCCTTCGGGA
* * * * *
68725505 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
68725552 CCTATCAC--ATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68725599 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68725646 CTTATCAC--ATATATACACTTTCACATTCATCATATCCGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68725693 CTTATCACATATATA-A-ACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68725740 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68725789 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68725836 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68725885 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68725934 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68725983 CTTATCTC--ATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
68726014 GCATAAAATC
Statistics
Matches: 436, Mismatches: 18, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 246 0.56
48 4 0.01
49 185 0.42
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68725786 original size:96 final size:96
Alignment explanation
Indices: 68725505--68726013 Score: 792
Period size: 96 Copynumber: 5.3 Consensus size: 96
68725495 CCCTTCGGGA
* * * * * * *
68725505 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
68725568 ACTTTCACATTTATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
68725599 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
68725662 ACTTTCACATTCATCATATCCGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
68725693 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
68725758 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
68725789 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
68725854 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
68725885 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
68725950 ACACTTTCACATTCATCACATCGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68725983 CTTATCTCATATATACACATTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
68726014 GCATAAAATC
Statistics
Matches: 388, Mismatches: 23, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
94 135 0.35
96 160 0.41
98 93 0.24
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68729053 original size:40 final size:40
Alignment explanation
Indices: 68729021--68729212 Score: 321
Period size: 40 Copynumber: 4.8 Consensus size: 40
68729011 CCAGCATGAT
* * * *
68729021 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68729061 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
68729101 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68729141 TGCTCTTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68729181 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
68729213 CTCAATTCTT
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:68731328 original size:40 final size:40
Alignment explanation
Indices: 68731256--68731462 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
68731246 CAATTGAATG
* * ** *
68731256 ATATCCGGGCTAAG-TCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
68731295 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
68731335 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
68731375 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
68731415 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
68731455 ATATCCGG
1 ATATCCGG
68731463 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 17 0.12
40 119 0.85
41 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:68731393 original size:80 final size:80
Alignment explanation
Indices: 68731297--68731462 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
68731287 TAGTAATTAT
* *
68731297 ATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCA
*
68731360 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* ** *
68731377 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
* *
68731442 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
68731457 ATCCGG
1 ATCCGG
68731463 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.03
80 71 0.95
81 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:68739322 original size:40 final size:40
Alignment explanation
Indices: 68739263--68739470 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
68739253 CAATTGAATG
* * * *
68739263 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
68739303 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
68739343 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
68739383 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
68739423 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
68739463 ATATCCGG
1 ATATCCGG
68739471 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:68739401 original size:80 final size:80
Alignment explanation
Indices: 68739265--68739470 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
68739255 ATTGAATGAT
* * ** * * *
68739265 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
68739329 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
68739345 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
68739410 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
68739425 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
68739471 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:68741956 original size:47 final size:48
Alignment explanation
Indices: 68741873--68741981 Score: 150
Period size: 47 Copynumber: 2.3 Consensus size: 48
68741863 TCCGGACTTA
*
68741873 ATCACAT-TCATACACTTTTCACATCCATCACGTTGGCCACTCGGCCCT
1 ATCACATAT-ATACACTTTTCACATCCATCACATTGGCCACTCGGCCCT
** * *
68741921 ATCACATATATACAC-TTTCACATTTATCACATTGGCCATTCGGCCTT
1 ATCACATATATACACTTTTCACATCCATCACATTGGCCACTCGGCCCT
68741968 ATCACATATATACA
1 ATCACATATATACA
68741982 TCTTNTAGCC
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
47 41 0.75
48 13 0.24
49 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.32
Consensus pattern (48 bp):
ATCACATATATACACTTTTCACATCCATCACATTGGCCACTCGGCCCT
Found at i:68755190 original size:40 final size:40
Alignment explanation
Indices: 68755135--68755382 Score: 259
Period size: 40 Copynumber: 6.2 Consensus size: 40
68755125 TGAATGATAG
* * *
68755135 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
68755175 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* * ** *
68755215 CCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
68755255 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* ** *
68755295 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * * ** *
68755335 CCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
68755375 CC-GGCTAA
1 CCGGGCTAA
68755383 ATTCCGAAGA
Statistics
Matches: 169, Mismatches: 35, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
39 7 0.04
40 159 0.94
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:68755268 original size:80 final size:80
Alignment explanation
Indices: 68755135--68755382 Score: 356
Period size: 80 Copynumber: 3.1 Consensus size: 80
68755125 TGAATGATAG
* * * * ** *
68755135 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
68755200 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
*
68755215 CCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
68755280 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
* *
68755295 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCAAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
** *
68755359 GTGCTTGTGGTTATAT
65 GTGCGAGTTGTTATAT
68755375 CC-GGCTAA
1 CCGGGCTAA
68755383 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 6 0.04
80 144 0.94
81 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTTGTTATAT
Found at i:68755354 original size:120 final size:120
Alignment explanation
Indices: 68755135--68755362 Score: 314
Period size: 120 Copynumber: 1.9 Consensus size: 120
68755125 TGAATGATAG
* * *
68755135 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** * ** *
68755200 TGCGAGTTGTTATATCCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAAT
66 TGCAAGTTACCAAATCCGGGCTAAGACCCAAAGGCAATTGTGCAAGTTACCAAAT
* *
68755255 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTC
*
68755319 GTGCAAGTTACCAAATCCGGGTTAAGACCCAAAGGCAATTGTGC
65 GTGCAAGTTACCAAATCCGGGCTAAGACCCAAAGGCAATTGTGC
68755363 TTGTGGTTAT
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 91 0.98
121 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAATCCGGGCTAAGACCCAAAGGCAATTGTGCAAGTTACCAAAT
Found at i:68761067 original size:43 final size:43
Alignment explanation
Indices: 68761006--68761092 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
68760996 AAATTACATG
* *
68761006 TGTCACGTACATCATGAACTCAGACCAACTCAATGAGCTCAGA
1 TGTCACATACATCATGAACTCAAACCAACTCAATGAGCTCAGA
* *
68761049 TGTCACATATATCATGAACTCAAACCAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAAACCAACTCAATGAGCTCAGA
68761092 T
1 T
68761093 TATATAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (43 bp):
TGTCACATACATCATGAACTCAAACCAACTCAATGAGCTCAGA
Found at i:68769409 original size:14 final size:14
Alignment explanation
Indices: 68769384--68769417 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
68769374 TAATAATTTG
*
68769384 AATATATATATTAT
1 AATATTTATATTAT
*
68769398 ATTATTTATATTAT
1 AATATTTATATTAT
68769412 AATATT
1 AATATT
68769418 AAGTAATAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AATATTTATATTAT
Found at i:68769684 original size:28 final size:29
Alignment explanation
Indices: 68769622--68769686 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
68769612 ACTTAAATCG
* * *
68769622 ATTTTAAATTAATATAATAAGATTTTATA
1 ATTTTAAATAAATATAATAAGATATTAAA
* *
68769651 A-GTTAAATAAATATAATTA-ATATTAAA
1 ATTTTAAATAAATATAATAAGATATTAAA
68769678 ATTTTAAAT
1 ATTTTAAAT
68769687 TATTCACCCT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
27 7 0.24
28 21 0.72
29 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (29 bp):
ATTTTAAATAAATATAATAAGATATTAAA
Found at i:68778927 original size:40 final size:40
Alignment explanation
Indices: 68778850--68779065 Score: 330
Period size: 40 Copynumber: 5.4 Consensus size: 40
68778840 AAACCAAGTA
* *
68778850 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
68778889 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68778929 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68778969 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
68779009 CCTTCGGGGCTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
68779049 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
68779066 AGTTATCATC
Statistics
Matches: 165, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.10
40 148 0.90
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68784445 original size:40 final size:40
Alignment explanation
Indices: 68784390--68784559 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
68784380 AACATTGGAA
68784390 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
68784430 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
68784470 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
68784509 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
68784550 CTATATCCGG
1 ATATATCCGG
68784560 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:68793778 original size:40 final size:39
Alignment explanation
Indices: 68793686--68793834 Score: 146
Period size: 38 Copynumber: 3.8 Consensus size: 39
68793676 AAATTGAATG
* * * *
68793686 ATATCCGGGCTAAGCCCCGAAGACAATTATGC--TGGAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGAT
* *
68793723 ATTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 A-TATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGGAT
*
68793764 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGAT
* *
68793802 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA
68793835 AATCGTGATA
Statistics
Matches: 95, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
37 2 0.02
38 55 0.58
39 5 0.05
40 29 0.31
41 4 0.04
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGAT
Found at i:68793846 original size:78 final size:78
Alignment explanation
Indices: 68793725--68793910 Score: 194
Period size: 78 Copynumber: 2.4 Consensus size: 78
68793715 TGCTGGAAAT
* * * *
68793725 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTATATCCGGGCTAAGACCCGAAGGCAT
68793790 TCGTGCGAGTTTC
66 TCGTGCGAGTTTC
* * * * *
68793803 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ATATCCGGGCTAAGACCCGAAGGCA
* * *
68793867 TTGGTGCGGGTTACC
65 TTCGTGCGAGTT-TC
* * * *
68793882 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 -TATCCGGGCTAAGACCCGAAGGCAATTG
68793911 ACGAGTAGCG
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
77 1 0.01
78 63 0.72
79 1 0.01
80 23 0.26
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (78 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTTTC
Found at i:68798862 original size:124 final size:124
Alignment explanation
Indices: 68798640--68798864 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
68798630 GAATTATGTG
* * * ** * * *
68798640 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
68798705 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
68798764 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
68798829 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
68798865 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:68798986 original size:40 final size:40
Alignment explanation
Indices: 68798859--68798988 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
68798849 ATGCTGGAAA
* *
68798859 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
68798899 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
68798939 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
68798979 TTATATCCGG
1 TTATATCCGG
68798989 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:68798987 original size:80 final size:80
Alignment explanation
Indices: 68798821--68798988 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
68798811 CAATTGAATG
* * *
68798821 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
68798886 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
68798901 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
68798965 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
68798981 ATATCCGG
1 ATATCCGG
68798989 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:68806320 original size:24 final size:24
Alignment explanation
Indices: 68806288--68806374 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
68806278 AATCTCAAAT
68806288 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
68806312 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
68806336 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
68806360 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
68806375 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:68806340 original size:48 final size:48
Alignment explanation
Indices: 68806288--68806396 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
68806278 AATCTCAAAT
** *
68806288 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
68806336 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
68806384 GCACTATGTGTGC
1 GCACTATGTGTGC
68806397 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:68806387 original size:24 final size:24
Alignment explanation
Indices: 68806288--68806396 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
68806278 AATCTCAAAT
*
68806288 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
68806312 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
68806336 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
68806360 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
68806384 GCACTATGTGTGC
1 GCACTATGTGTGC
68806397 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:68825464 original size:26 final size:24
Alignment explanation
Indices: 68825408--68825465 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
68825398 TCTTACTTAT
**
68825408 TCGCACACATAGTGCCATGTTTTC
1 TCGCACACATAGTGCCATGTAATC
68825432 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCATGTAATC
68825456 TCGCACACAT
1 TCGCACACAT
68825466 TGCGCCGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (24 bp):
TCGCACACATAGTGCCATGTAATC
Found at i:68832266 original size:40 final size:40
Alignment explanation
Indices: 68832211--68832426 Score: 330
Period size: 40 Copynumber: 5.4 Consensus size: 40
68832201 GAATGATATT
68832211 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATC
68832251 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
68832291 CGGGTTAATTCCCGAAGGCA-TTGTGCGAGTTACCAAATC
1 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATC
* * *
68832330 TGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATC
1 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
68832370 CGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-C
1 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
68832410 CGGGCT-ATGTCCCGAAG
1 CGGGTTAAT-TCCCGAAG
68832427 ACAATCGAAC
Statistics
Matches: 164, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 38 0.23
40 124 0.76
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:68832423 original size:119 final size:119
Alignment explanation
Indices: 68832212--68832426 Score: 353
Period size: 119 Copynumber: 1.8 Consensus size: 119
68832202 AATGATATTC
* * *
68832212 GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTTGTG
1 GGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
* *
68832277 CGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTGTGCGAGTTACCAAATCT
66 CGAATTACTAAATCCGGGCTAATTCCCGAAGGCATTGTGCGAGTTACCAAATCT
68832331 GGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 GGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
68832396 CGAATTACTATAA-CCGGGCT-ATGTCCCGAAG
66 CGAATTACTA-AATCCGGGCTAAT-TCCCGAAG
68832427 ACAATCGAAC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
118 2 0.02
119 85 0.96
120 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (119 bp):
GGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAATTACTAAATCCGGGCTAATTCCCGAAGGCATTGTGCGAGTTACCAAATCT
Found at i:68832455 original size:79 final size:80
Alignment explanation
Indices: 68832211--68832431 Score: 331
Period size: 79 Copynumber: 2.8 Consensus size: 80
68832201 GAATGATATT
*
68832211 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTTGT
1 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATTGT
68832276 GCGAGTTACTAAATC
66 GCGAGTTACTAAATC
* *
68832291 CGGGTTAATTCCCGAAGGCA-TTGTGCGAGTTACCAAATCTGGGTTAATTCCCGAAGGCAATTGT
1 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATTGT
*
68832355 GCGAGTTACCAAATC
66 GCGAGTTACTAAATC
* * * *
68832370 CGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGACAAT
1 CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAT-TCCCGAAGGCAAT
68832432 CGAACGAGTA
Statistics
Matches: 128, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
79 76 0.59
80 50 0.39
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (80 bp):
CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATTGT
GCGAGTTACTAAATC
Found at i:68836640 original size:22 final size:22
Alignment explanation
Indices: 68836607--68836664 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
68836597 TGCTCTTACT
*
68836607 TATTCTCACACATAGTGCCACG
1 TATTCTCGCACATAGTGCCACG
* *
68836629 TTTTCTCGCACACATAGTGCCATG
1 TATTCTCG--CACATAGTGCCACG
*
68836653 TAATCTCGCACA
1 TATTCTCGCACA
68836665 CATTGTGCCG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
22 10 0.34
24 19 0.66
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (22 bp):
TATTCTCGCACATAGTGCCACG
Found at i:68836666 original size:26 final size:24
Alignment explanation
Indices: 68836613--68836673 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
68836603 TACTTATTCT
**
68836613 CACACATAGTGCCACGTTTTCTCG
1 CACACATAGTGCCACGTAATCTCG
*
68836637 CACACATAGTGCCATGTAATCTCG
1 CACACATAGTGCCACGTAATCTCG
*
68836661 CACACATTGTGCC
1 CACACATAGTGCC
68836674 GTATAGCCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (24 bp):
CACACATAGTGCCACGTAATCTCG
Found at i:68839035 original size:25 final size:25
Alignment explanation
Indices: 68839006--68839053 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68838996 TTATAACATG
* * *
68839006 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68839031 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68839054 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68839220 original size:24 final size:24
Alignment explanation
Indices: 68839164--68839268 Score: 176
Period size: 24 Copynumber: 4.4 Consensus size: 24
68839154 GGAGGAAGTG
68839164 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
68839188 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
68839211 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
68839235 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68839259 AAAAGAGGCT
1 AAAAG-GGCT
68839269 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 22 0.29
24 50 0.66
25 4 0.05
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68839514 original size:30 final size:29
Alignment explanation
Indices: 68839469--68839530 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 29
68839459 CGTTTACAGT
68839469 AAAGGCTTCGCCCAGTAATATGAAATATG
1 AAAGGCTTCGCCCAGTAATATGAAATATG
**
68839498 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTC-GCCCAGTAATATGAAATATG
68839528 AAA
1 AAA
68839531 TATGAAGGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (29 bp):
AAAGGCTTCGCCCAGTAATATGAAATATG
Found at i:68847217 original size:23 final size:23
Alignment explanation
Indices: 68847187--68847306 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
68847177 AGGAAGTGAA
*
68847187 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
68847210 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
68847234 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
68847257 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
68847280 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
68847304 AAA
1 AAA
68847307 AGAGGCTACG
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
23 47 0.52
24 44 0.48
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:68847242 original size:24 final size:23
Alignment explanation
Indices: 68847186--68847313 Score: 184
Period size: 24 Copynumber: 5.4 Consensus size: 23
68847176 GAGGAAGTGA
*
68847186 AAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
68847209 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
68847232 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
68847256 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
68847280 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
68847304 AAAAGAGGCT
1 AAAAG-GGCT
68847314 ACGCCTCCAG
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
23 42 0.44
24 50 0.52
25 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:68847255 original size:47 final size:47
Alignment explanation
Indices: 68847186--68847306 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
68847176 GAGGAAGTGA
*
68847186 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
68847233 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
68847280 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
68847307 AGAGGCTACG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:68847558 original size:31 final size:31
Alignment explanation
Indices: 68847520--68847580 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
68847510 CGTTTACAGT
68847520 AAAGGCTTCGACCCAGTAATATGAAATATGG
1 AAAGGCTTCGACCCAGTAATATGAAATATGG
**
68847551 AAAGGCTTCGACCCAGTGTTATGAAATATG
1 AAAGGCTTCGACCCAGTAATATGAAATATG
68847581 AAATATTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGG
Found at i:68863516 original size:46 final size:46
Alignment explanation
Indices: 68863461--68863629 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
68863451 GGTTGAGCAT
*
68863461 CCGAACTCGTTGGGTTGAGTCCGAGTTCACCTATGGATGTGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATGC
*
68863507 CCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATGT-AACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGTGAA-T--GC
** * *
68863552 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATGC
* *
68863600 CCGAGCTCATTGAGTTGAGTCCGAGTTCAC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC
68863630 TTAGGGGCGG
Statistics
Matches: 103, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 7 0.07
45 2 0.02
46 53 0.51
47 27 0.26
48 2 0.02
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATGC
Found at i:68863616 original size:93 final size:93
Alignment explanation
Indices: 68863457--68863627 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
68863447 GGATGGTTGA
* * * *
68863457 GCATCCGAACTCGTTGGGTTGAGTCCGAGTTCACCTATGGATGTGAATGCCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
68863522 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** *
68863550 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
68863615 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68863628 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68868240 original size:40 final size:40
Alignment explanation
Indices: 68868190--68868426 Score: 315
Period size: 40 Copynumber: 6.0 Consensus size: 40
68868180 TGCCCGGTTA
*
68868190 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
68868230 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
68868270 TAGTAACTCGTACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
**
68868310 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTAGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
68868350 TAGTAACTCGCACAAATGCCTTTGGATCTTAG-CTCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTC-CGGATT
* *
68868390 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAG-CCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
68868427 CATCATTCGA
Statistics
Matches: 180, Mismatches: 12, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
39 8 0.04
40 160 0.89
41 12 0.07
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:68880871 original size:40 final size:40
Alignment explanation
Indices: 68880826--68880993 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
68880816 CGGAATATAA
68880826 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
68880866 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
68880906 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
68880946 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68880986 CCGGATAT
1 CCGGATAT
68880994 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68884316 original size:26 final size:26
Alignment explanation
Indices: 68884285--68884418 Score: 232
Period size: 26 Copynumber: 5.2 Consensus size: 26
68884275 ATGAATGCCC
68884285 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
68884311 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
68884337 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
68884363 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
68884389 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
68884415 ATCA
1 ATCA
68884419 ATTTGTACCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:68888676 original size:40 final size:40
Alignment explanation
Indices: 68888568--68888777 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
68888558 CGGGATTTAA
* * * * *
68888568 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
68888608 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
68888648 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
68888688 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
68888728 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
68888768 CCGGATATAT
1 CCGGATATAT
68888778 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:68896708 original size:40 final size:40
Alignment explanation
Indices: 68896600--68896809 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
68896590 CGGGATTTAA
* * * * *
68896600 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
68896640 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
68896680 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
68896720 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
68896760 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
68896800 CCGGATATAT
1 CCGGATATAT
68896810 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:68903906 original size:38 final size:38
Alignment explanation
Indices: 68903812--68903999 Score: 198
Period size: 38 Copynumber: 4.9 Consensus size: 38
68903802 CGAGGTATAA
* * * *
68903812 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * *
68903851 CAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTT
1 -AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
*
68903890 AACCCAGATATAATACCAGCACGAAGCCTACGGGATTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
* * * *
68903928 AACCCGGTTATATTACCAGCACAAAGCCTGCGGGATTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
* * * *
68903966 AACTCGGATATAATTCCAGCA-TATAGCCTGCGGG
1 AACCCAGATATAATACCAGCACGA-AGCCTGCGGG
68904000 TCTTTAAGCC
Statistics
Matches: 126, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 94 0.75
39 3 0.02
40 28 0.22
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:68903994 original size:76 final size:78
Alignment explanation
Indices: 68903812--68903986 Score: 228
Period size: 76 Copynumber: 2.3 Consensus size: 78
68903802 CGAGGTATAA
* * * * * *
68903812 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTTCAACTCAGATATAATACCAGCACTAG
1 AACCCAGATATAATACCAGCACGAAGCCTACGGGACTTTCAACCCAGATATAATACCAGCACAAA
68903877 GCCTGCGGGATTT
66 GCCTGCGGGATTT
* * *
68903890 AACCCAGATATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCGGTTATATTACCAGCACAAA
1 AACCCAGATATAATACCAGCACGAAGCCTACGGGACTTTCAACCCAGATATAATACCAGCACAAA
68903953 GCCTGCGGGATTT
66 GCCTGCGGGATTT
* * *
68903966 AACTCGGATATAATTCCAGCA
1 AACCCAGATATAATACCAGCA
68903987 TATAGCCTGC
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
76 50 0.59
77 3 0.04
78 32 0.38
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.20
Consensus pattern (78 bp):
AACCCAGATATAATACCAGCACGAAGCCTACGGGACTTTCAACCCAGATATAATACCAGCACAAA
GCCTGCGGGATTT
Found at i:68904026 original size:40 final size:38
Alignment explanation
Indices: 68903877--68904019 Score: 128
Period size: 38 Copynumber: 3.7 Consensus size: 38
68903867 CCAGCACTAG
* * * *
68903877 GCCTGCGGGATTTAACCCAGATATAATACCAGCACGA-A
1 GCCTGCGGGATTTAACCCGGATACAATTCCAGCA-TATA
* * * * *
68903915 GCCTACGGGATTTAACCCGGTTA-TATTACCAGCACAAA
1 GCCTGCGGGATTTAACCCGGATACAATT-CCAGCATATA
* *
68903953 GCCTGCGGGATTTAACTCGGATATAATTCCAGCATATA
1 GCCTGCGGGATTTAACCCGGATACAATTCCAGCATATA
*
68903991 GCCTGCGGGTCTTTAAGCCCGGATACAAT
1 GCCTGCGGG-ATTTAA-CCCGGATACAAT
68904020 CTCAGCACAA
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
37 3 0.04
38 64 0.75
39 8 0.09
40 10 0.12
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (38 bp):
GCCTGCGGGATTTAACCCGGATACAATTCCAGCATATA
Found at i:68907506 original size:25 final size:25
Alignment explanation
Indices: 68907478--68907534 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
68907468 CAACTCGTCT
* *
68907478 GAGCTTACTATTATTCAACTCGAAG
1 GAGCTTACCATTATTCAACTCAAAG
* *
68907503 GAGCTTACCGTTATTCAGCTCAAAG
1 GAGCTTACCATTATTCAACTCAAAG
68907528 GAGCTTA
1 GAGCTTA
68907535 ACGTTTACAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (25 bp):
GAGCTTACCATTATTCAACTCAAAG
Found at i:68907539 original size:25 final size:25
Alignment explanation
Indices: 68907488--68907547 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
68907478 GAGCTTACTA
* * *
68907488 TTATTCAACTCGAAGGAGCTTACCG
1 TTATTCAGCTCAAAGGAGCTTAACG
68907513 TTATTCAGCTCAAAGGAGCTTAACG
1 TTATTCAGCTCAAAGGAGCTTAACG
*
68907538 TT-TACAGCTC
1 TTATTCAGCTC
68907548 GTATGAGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 7 0.23
25 24 0.77
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (25 bp):
TTATTCAGCTCAAAGGAGCTTAACG
Found at i:68920193 original size:11 final size:11
Alignment explanation
Indices: 68920177--68920211 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
68920167 CCTAAGGATG
68920177 AAATAAAAGTA
1 AAATAAAAGTA
*
68920188 AAATAAAAGAA
1 AAATAAAAGTA
68920199 AAATAAAA-TA
1 AAATAAAAGTA
68920209 AAA
1 AAA
68920212 AGTAGATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 4 0.18
11 18 0.82
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (11 bp):
AAATAAAAGTA
Found at i:68920205 original size:16 final size:16
Alignment explanation
Indices: 68920181--68920211 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68920171 AGGATGAAAT
*
68920181 AAAAGTAAAATAAAAG
1 AAAAATAAAATAAAAG
68920197 AAAAATAAAATAAAA
1 AAAAATAAAATAAAA
68920212 AGTAGATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:68921869 original size:26 final size:26
Alignment explanation
Indices: 68921840--68921947 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
68921830 TGATACAAAT
68921840 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68921866 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68921892 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68921918 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68921944 TGAT
1 TGAT
68921948 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68923574 original size:27 final size:26
Alignment explanation
Indices: 68923525--68923664 Score: 149
Period size: 27 Copynumber: 5.2 Consensus size: 26
68923515 AGGAAGCACC
* * *
68923525 CTGGTGGCTATGCTACAATTATCTGAT
1 CTGGTGGCTCTACCACAA-TATCTGAT
68923552 CTGGTGGCTCTACCACATATATCTG-T
1 CTGGTGGCTCTACCACA-ATATCTGAT
* *
68923578 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTACCACAA-TATCTGAT
* *
68923606 CTGGTGGCTCTGCCACATATAT-TGTT
1 CTGGTGGCTCTACCACA-ATATCTGAT
68923632 CTGGTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTCTACCACAATATCTG-AT
68923659 CTGGTG
1 CTGGTG
68923665 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
25 4 0.04
26 23 0.24
27 67 0.69
28 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTACCACAATATCTGAT
Found at i:68923606 original size:54 final size:53
Alignment explanation
Indices: 68923524--68923664 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 53
68923514 GAGGAAGCAC
*
68923524 CCTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTACCACATATATCTGT
1 CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATAT-TGT
*
68923578 CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTGT
1 CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTGT
* * *
68923631 TCTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 CCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
68923665 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
52 6 0.07
53 27 0.33
54 48 0.59
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (53 bp):
CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTGT
Found at i:68927042 original size:40 final size:40
Alignment explanation
Indices: 68926998--68927127 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
68926988 TCGAATATAA
68926998 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
68927038 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
68927078 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
68927118 CCGGATATAA
1 CCGGATATAA
68927128 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68927142 original size:40 final size:40
Alignment explanation
Indices: 68926998--68927165 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
68926988 TCGAATATAA
* ** *
68926998 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
* *
68927038 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
68927078 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
68927118 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGG-TCTTAGC
68927158 CCGGATAT
1 CCGGATAT
68927166 CATTCAATTT
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
39 2 0.02
40 98 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:68927148 original size:80 final size:80
Alignment explanation
Indices: 68927014--68927163 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
68927004 ATAACCACGT
*
68927014 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGAT-TTAGC
68927078 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * ** * *
68927094 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGATTTAG
68927157 CCCGGAT
64 CCCGGAT
68927164 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:68935150 original size:80 final size:80
Alignment explanation
Indices: 68935066--68935214 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
68935056 TATGGTAACC
* * * *
68935066 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
68935130 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
68935146 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
68935211 CCGG
66 CCGG
68935215 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:68935156 original size:40 final size:38
Alignment explanation
Indices: 68935107--68935214 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
68935097 ATCACGATTT
*
68935107 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
68935147 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
68935187 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
68935215 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:68943887 original size:23 final size:23
Alignment explanation
Indices: 68943857--68943908 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
68943847 GAAATATTCT
* *
68943857 ATTCATCAAATACATAACCACAA
1 ATTCATCAAAGACATAACCAAAA
* *
68943880 ATTCATCAAAGGCATAACTAAAA
1 ATTCATCAAAGACATAACCAAAA
68943903 ATTCAT
1 ATTCAT
68943909 AATGTCCATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.50, C:0.21, G:0.04, T:0.25
Consensus pattern (23 bp):
ATTCATCAAAGACATAACCAAAA
Found at i:68945612 original size:26 final size:26
Alignment explanation
Indices: 68945581--68945634 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
68945571 GAAACTCTTT
68945581 TTGTTCTTTATCAAGATATCGCTGGC
1 TTGTTCTTTATCAAGATATCGCTGGC
68945607 TTGTTCTTTATCAAGATATCGCTGGC
1 TTGTTCTTTATCAAGATATCGCTGGC
68945633 TT
1 TT
68945635 ACATACTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (26 bp):
TTGTTCTTTATCAAGATATCGCTGGC
Found at i:68948833 original size:31 final size:31
Alignment explanation
Indices: 68948798--68948857 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
68948788 GTAATGTCGC
68948798 AGCATCGACACATGAAACACATTATCAATGT
1 AGCATCGACACATGAAACACATTATCAATGT
*
68948829 AGCATCGATACATGAAACACATTATCAAT
1 AGCATCGACACATGAAACACATTATCAAT
68948858 CTTTTCCAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.43, C:0.22, G:0.12, T:0.23
Consensus pattern (31 bp):
AGCATCGACACATGAAACACATTATCAATGT
Found at i:68952636 original size:54 final size:54
Alignment explanation
Indices: 68952549--68952656 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
68952539 TCATTTAGCC
* *
68952549 CATCTTCGAACCTCTTACACATAATAGCTTCGGTGGAAACACACTCCTGGGCAT
1 CATCCTCGAACCGCTTACACATAATAGCTTCGGTGGAAACACACTCCTGGGCAT
*
68952603 CATCCTCGAACCGCTTACACATAATAGCTTCGGTGGACACACACTCCTGGGCAT
1 CATCCTCGAACCGCTTACACATAATAGCTTCGGTGGAAACACACTCCTGGGCAT
68952657 ACTTGCTGAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (54 bp):
CATCCTCGAACCGCTTACACATAATAGCTTCGGTGGAAACACACTCCTGGGCAT
Found at i:68954709 original size:51 final size:49
Alignment explanation
Indices: 68954575--68954761 Score: 193
Period size: 51 Copynumber: 3.8 Consensus size: 49
68954565 TGAAGCTATC
* * *
68954575 TGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGATTAA--CAAT
1 TGATACACATAGTAGCCTGCACTTAGTACTACACACGCGATAAAGTC-AT
* * *
68954623 TCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCAT
1 T-GATACACATAGTAGCCTGCACTTAGTACTACACACGCGAT-AAAGTCAT
** *
68954674 TGAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGT-A-
1 TGA-TACACATAGTAGCCTGCACTTAGTACTACACACGCGA--TAA-AGTCAT
*
68954725 TGATACACATAGTAGCCTACACTTAGTACTACACACG
1 TGATACACATAGTAGCCTGCACTTAGTACTACACACG
68954762 TGTATTCACA
Statistics
Matches: 116, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
48 1 0.01
49 36 0.31
50 34 0.29
51 38 0.33
52 3 0.03
53 4 0.03
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (49 bp):
TGATACACATAGTAGCCTGCACTTAGTACTACACACGCGATAAAGTCAT
Found at i:68954755 original size:101 final size:100
Alignment explanation
Indices: 68954581--68954763 Score: 314
Period size: 101 Copynumber: 1.8 Consensus size: 100
68954571 TATCTGATAC
* *
68954581 GCATAGTAGCCTGCACTTAGTACTACACATGCGATTAACAATTCGATACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGATTAACAATTCGATACACATAGTAGCCTACAC
68954646 TTAGTACTACACACGTGATCGAAGTCATTGAGTAT
66 TTAGTACTACACACGTGATCGAAGTCATTGAGTAT
*
68954681 GCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTAT-GATACACATAGTAGCCTAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGA-TTAACAAT-TCGATACACATAGTAGCCTAC
68954745 ACTTAGTACTACACACGTG
64 ACTTAGTACTACACACGTG
68954764 TATTCACAAT
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
100 34 0.44
101 43 0.55
102 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (100 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGATTAACAATTCGATACACATAGTAGCCTACAC
TTAGTACTACACACGTGATCGAAGTCATTGAGTAT
Found at i:68956443 original size:28 final size:28
Alignment explanation
Indices: 68956403--68956456 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
68956393 TAATTCTGCC
68956403 ACAAGATGTGAGGTTTGCGGGAGTGCAT
1 ACAAGATGTGAGGTTTGCGGGAGTGCAT
*
68956431 ACAAGATGTGAGGTTTGCGTGAGTGC
1 ACAAGATGTGAGGTTTGCGGGAGTGC
68956457 TCAAGTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.11, G:0.39, T:0.26
Consensus pattern (28 bp):
ACAAGATGTGAGGTTTGCGGGAGTGCAT
Found at i:68958107 original size:27 final size:28
Alignment explanation
Indices: 68958037--68958134 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
68958027 TCGATAAGGC
* *
68958037 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
68958065 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** *
68958093 CGCA-ACTTAGTGCTATACAATTTGAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68958121 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68958135 CGAAACCAAC
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 15 0.25
28 36 0.59
29 10 0.16
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68967050 original size:28 final size:28
Alignment explanation
Indices: 68966989--68967086 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
68966979 TCACAAATTG
** * *
68966989 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
68967018 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
68967046 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
68967074 GCACTAAGTGTGC
1 GCACTAAGTGTGC
68967087 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:68974730 original size:28 final size:28
Alignment explanation
Indices: 68974669--68974766 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
68974659 TCACAAATTG
** * *
68974669 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
68974698 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
68974726 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
68974754 GCACTAAGTGTGC
1 GCACTAAGTGTGC
68974767 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:68976462 original size:28 final size:28
Alignment explanation
Indices: 68976407--68976505 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
68976397 TCGATAAGGC
* *
68976407 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
*
68976435 CGTACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * ** *
68976463 CGCAAACTTAGTGCTATACAATTTGAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68976492 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68976506 CGAAACCAAC
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 41 0.69
29 18 0.31
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68979158 original size:38 final size:39
Alignment explanation
Indices: 68979106--68979248 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
68979096 GAATGTTCGA
68979106 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
68979145 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
68979183 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
68979222 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
68979249 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:68979194 original size:77 final size:79
Alignment explanation
Indices: 68979107--68979288 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
68979097 AATGTTCGAG
68979107 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
68979170 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
68979184 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
68979249 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
68979263 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
68979289 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:68984132 original size:71 final size:71
Alignment explanation
Indices: 68984016--68984179 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
68984006 CGATTTGTCT
*
68984016 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68984081 CTTTCA
66 CTTTCA
68984087 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68984152 CTTTCA
66 CTTTCA
68984158 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
68984180 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:68984217 original size:71 final size:70
Alignment explanation
Indices: 68984016--68984213 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
68984006 CGATTTGTCT
* * *
68984016 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGTGACCTAGCTACATTTAT
68984081 CTTTCA
65 CTTTCA
* * * *
68984087 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGTGACCTAGCTACATTTAT
68984152 CTTTCA
65 CTTTCA
* *
68984158 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGTGACCTAGCTAC
68984214 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGTGACCTAGCTACATTTATC
TTTCA
Found at i:68998004 original size:17 final size:18
Alignment explanation
Indices: 68997962--68998010 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
68997952 AGTTGAAAAG
68997962 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
68997981 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
68997998 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
68998011 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Done.