Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 235 of 345
Found at i:68998899 original size:40 final size:40
Alignment explanation
Indices: 68998833--68998999 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
68998823 AAATTGAATG
* * *
68998833 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
68998872 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
68998912 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
68998952 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
68998992 ATATCCGG
1 ATATCCGG
68999000 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69003597 original size:2 final size:2
Alignment explanation
Indices: 69003590--69003618 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
69003580 TTAAAAACAA
69003590 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69003619 AATGAAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69009465 original size:20 final size:20
Alignment explanation
Indices: 69009437--69009480 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
69009427 AACTAACTTG
* *
69009437 CAACTTACCATAATCTTTCA
1 CAACATACCATAAGCTTTCA
*
69009457 CAACATACCATAGGCTTTCA
1 CAACATACCATAAGCTTTCA
69009477 CAAC
1 CAAC
69009481 TTAAACATCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.32, G:0.05, T:0.27
Consensus pattern (20 bp):
CAACATACCATAAGCTTTCA
Found at i:69009675 original size:41 final size:42
Alignment explanation
Indices: 69009566--69009686 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 42
69009556 TACCATACTA
* *
69009566 ATGCCATATCCCAGATATGGTCTTACATG-GGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* *
69009608 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
69009651 AT-TCATATCCCAGATATGGTCTTACACGTAA-TCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCA
69009687 ACTAACCCTA
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
41 27 0.39
42 8 0.12
43 33 0.48
44 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:69013125 original size:70 final size:70
Alignment explanation
Indices: 69012993--69013125 Score: 194
Period size: 70 Copynumber: 1.9 Consensus size: 70
69012983 ATGAATATAG
* * * *
69012993 TGATTGGTAGTAATTCCACATACGTTGTGGACTACCGTAGCTCTGTGTGAGCATCGAGGTATAAG
1 TGATTGGTAGTAATTCCACATACGTTATGGACTACCGTAGCTCTATGTGAGCATCAAAGTATAAG
69013058 CTTAA
66 CTTAA
** * *
69013063 TGATTGGTAGTAATTCTGCATATGTTATGGATTACCGTAGCTCTATGTGAGCATCAAAGTATA
1 TGATTGGTAGTAATTCCACATACGTTATGGACTACCGTAGCTCTATGTGAGCATCAAAGTATA
69013126 TGATTTTCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 55 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (70 bp):
TGATTGGTAGTAATTCCACATACGTTATGGACTACCGTAGCTCTATGTGAGCATCAAAGTATAAG
CTTAA
Found at i:69023283 original size:13 final size:12
Alignment explanation
Indices: 69023255--69023286 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
69023245 CTAAAATTTG
69023255 TTTTTGAATTGA
1 TTTTTGAATTGA
*
69023267 TTTTTGAATTGG
1 TTTTTGAATTGA
69023279 TTTTTGAA
1 TTTTTGAA
69023287 ATGTATATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (12 bp):
TTTTTGAATTGA
Found at i:69023896 original size:41 final size:40
Alignment explanation
Indices: 69023744--69023913 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
69023734 TGCTAATCGG
*
69023744 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
69023785 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
69023828 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
69023868 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCTGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
69023909 -TCTAA
1 GTCTAA
69023914 GAGTCGGACT
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 8 0.07
40 13 0.12
41 50 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:69027043 original size:26 final size:26
Alignment explanation
Indices: 69027014--69027068 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
69027004 AAAATGAGTC
69027014 TAATTTCACTTTAAAGACCCCCAATT
1 TAATTTCACTTTAAAGACCCCCAATT
69027040 TAATTTCACTTTAAAGACCCCCAATT
1 TAATTTCACTTTAAAGACCCCCAATT
69027066 TAA
1 TAA
69027069 GATACAAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.35
Consensus pattern (26 bp):
TAATTTCACTTTAAAGACCCCCAATT
Found at i:69029036 original size:53 final size:54
Alignment explanation
Indices: 69028968--69029174 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
69028958 TTCCTTTTTA
* *
69028968 AACTTACCATTTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
69029021 AACTCACCATTTCCATGCCTTGGCATGGTCTTACATAGG-ATCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACAT-GGTATCCTTGCCTTATAG
** * * *** * *
69029075 TAGTTTATCAATGCCATGTCTTGACATGGTCTTATACAATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
69029130 AACTTACCAATGCCATGTCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
69029175 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
53 45 0.37
54 38 0.31
55 38 0.31
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:69033204 original size:28 final size:28
Alignment explanation
Indices: 69033172--69033240 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
69033162 GCGTAGATCA
69033172 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
69033200 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
69033228 CGATA-TACCCCTA
1 CGAAATTACCCCTA
69033241 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:69037380 original size:20 final size:20
Alignment explanation
Indices: 69037355--69037392 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69037345 GTTTATTCGC
*
69037355 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
69037375 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
69037393 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:69039039 original size:28 final size:28
Alignment explanation
Indices: 69039007--69039075 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
69038997 GCGTAGATCA
69039007 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
69039035 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
69039063 CGATA-TACCCCTA
1 CGAAATTACCCCTA
69039076 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:69043215 original size:20 final size:20
Alignment explanation
Indices: 69043190--69043227 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69043180 GTTTATTCGC
*
69043190 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
69043210 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
69043228 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:69044872 original size:27 final size:27
Alignment explanation
Indices: 69044841--69044909 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
69044831 AGCGTAGATC
69044841 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
69044868 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGCAAAATT
*
69044895 ACCGATA-TACCCCTA
1 A-CGAAATTACCCCTA
69044910 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 36 0.90
28 4 0.10
ACGTcount: A:0.45, C:0.26, G:0.10, T:0.19
Consensus pattern (27 bp):
ACGAAATTACCCCTAAAGAGCAAAATT
Found at i:69047125 original size:18 final size:19
Alignment explanation
Indices: 69047104--69047139 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
69047094 AATAAAGAAA
*
69047104 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
69047122 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
69047140 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:69048592 original size:29 final size:29
Alignment explanation
Indices: 69048479--69048580 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
69048469 AAAATTGTAC
69048479 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
69048508 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
69048537 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
69048566 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69048581 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:69052873 original size:163 final size:163
Alignment explanation
Indices: 69052668--69052990 Score: 558
Period size: 163 Copynumber: 2.0 Consensus size: 163
69052658 GCCAATCCCC
* * *
69052668 TCGGTACTCCAGGTGCAGTGCACTGACTATGAATAATACGGACTTAATATGCCGCC-AGTCCTCC
1 TCGGTACGCCAGGTGCAGTGCACTGACTACGAATAATACGGACTTAATATGCCGCCGA-TACTCC
* * *
69052732 ATGGAACTCCTCCGTCAACCACAAAATCCCAACCCATTGCATATGCAATATGTCACACAATCTCA
65 ACGGAACTCCTCCGTCAACCAAAAAATCCCAACCCAATGCATATGCAATATGTCACACAATCTCA
69052797 TACATAATCATGTCTCAATACTTTTCACATTTGA
130 TACATAATCATGTCTCAATACTTTTCACATTTGA
* *
69052831 TCGGTACGCTAGGTGCAGTGCACTGACTACGAATAGTACGGACTTAATATGCCGCCGATACTCCA
1 TCGGTACGCCAGGTGCAGTGCACTGACTACGAATAATACGGACTTAATATGCCGCCGATACTCCA
69052896 CGGAACTCCTCCGTCAACCAAAAAATCCCAACCCAATGCATATGCAATATGTCACACAATCTCAT
66 CGGAACTCCTCCGTCAACCAAAAAATCCCAACCCAATGCATATGCAATATGTCACACAATCTCAT
69052961 ACATAATCATGTCTCAATACTTTTCACATT
131 ACATAATCATGTCTCAATACTTTTCACATT
69052991 CATTTGACAT
Statistics
Matches: 151, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
163 150 0.99
164 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (163 bp):
TCGGTACGCCAGGTGCAGTGCACTGACTACGAATAATACGGACTTAATATGCCGCCGATACTCCA
CGGAACTCCTCCGTCAACCAAAAAATCCCAACCCAATGCATATGCAATATGTCACACAATCTCAT
ACATAATCATGTCTCAATACTTTTCACATTTGA
Found at i:69057608 original size:31 final size:31
Alignment explanation
Indices: 69057530--69057704 Score: 230
Period size: 31 Copynumber: 5.7 Consensus size: 31
69057520 TTAGTCTTGG
** *
69057530 CATAT-ACTGGGCCGAAGCCTTTTGTTTAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
** *
69057560 GGT-T-ACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
69057589 CATATCACAGGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
69057620 CATATCACTGGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
69057651 CATATCTCTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
69057682 CATATCACTGGGCAGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
69057705 ACTGTAAACG
Statistics
Matches: 127, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
29 23 0.18
30 2 0.02
31 102 0.80
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:69057943 original size:13 final size:13
Alignment explanation
Indices: 69057925--69057952 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
69057915 CTTTTAATAA
69057925 CTGGGGCAAAGCC
1 CTGGGGCAAAGCC
69057938 CTGGGGCAAAGCC
1 CTGGGGCAAAGCC
69057951 CT
1 CT
69057953 TTTTGGTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.36, T:0.11
Consensus pattern (13 bp):
CTGGGGCAAAGCC
Found at i:69057975 original size:25 final size:25
Alignment explanation
Indices: 69057941--69058005 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
69057931 CAAAGCCCTG
*
69057941 GGGCAAAGCCCTTTTTGGTAAACTA
1 GGGCAAAGCCCTTTTCGGTAAACTA
*
69057966 GGGCAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAGCCCTTTTCGGTAAACTA
*
69057991 GGGCATAGCCCTTTT
1 GGGCAAAGCCCTTTT
69058006 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTCGGTAAACTA
Found at i:69058850 original size:27 final size:27
Alignment explanation
Indices: 69058779--69058850 Score: 62
Period size: 27 Copynumber: 2.7 Consensus size: 27
69058769 TCATACGAAA
*
69058779 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCACTTTAC
* *
69058804 CATACAGGGGTATTATGGTCACTTTAC
1 CATACAGGGCTATTACGGTCACTTTAC
*
69058831 CCTACAAGGGCT-TTACGGTC
1 CATAC-AGGGCTATTACGGTC
69058851 TTTTTACCTA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
25 8 0.22
26 4 0.11
27 20 0.54
28 5 0.14
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCACTTTAC
Found at i:69059025 original size:27 final size:27
Alignment explanation
Indices: 69058889--69059098 Score: 120
Period size: 27 Copynumber: 7.7 Consensus size: 27
69058879 TTTCATCCTA
* * * *
69058889 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** ** *
69058916 CAAGGGCATTTCAATAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
69058943 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
**
69058972 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
69058999 CAAGGATATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *** * *
69059026 TGAGGGTATTTCAATAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
69059053 CAATGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
69059079 CTAGGGGTATTTTGGTAATT
1 C-AAGGGTATTTTGGTAATT
69059099 CTACCCTATA
Statistics
Matches: 139, Mismatches: 39, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
26 2 0.01
27 108 0.78
28 14 0.10
29 15 0.11
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:69059087 original size:54 final size:54
Alignment explanation
Indices: 69058897--69059090 Score: 194
Period size: 54 Copynumber: 3.6 Consensus size: 54
69058887 TACAAGGGTG
* * * *
69058897 TTTTGGTAAATCTACAAACCAAGGGCATTTCAATAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCAATAATTTTGTAAACCAATGGTA
* * * ** *
69058951 TTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAA-GGATA
1 TTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCAATAATTTTGTAAACCAATGG-TA
* * ***
69059007 TTTTGGTAATTTTACAAATTGAGGGTATTTCAATAATTTCACAAACCAATGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCAATAATTTTGTAAACCAATGGTA
*
69059061 TTTTGGTAATTTTACAAACTAGGGGTATTT
1 TTTTGGTAATTTTACAAACTAAGGGTATTT
69059091 TGGTAATTCT
Statistics
Matches: 111, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
54 57 0.51
55 21 0.19
56 33 0.30
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAACTAAGGGTATTTCAATAATTTTGTAAACCAATGGTA
Found at i:69059138 original size:27 final size:27
Alignment explanation
Indices: 69059005--69059164 Score: 85
Period size: 27 Copynumber: 6.0 Consensus size: 27
69058995 AAATCAAGGA
* * *
69059005 TATTTTGGTAATTTTACAAATTGA-GGG
1 TATTTCGGTAATTTCAC-AATCGAGGGG
** * * **
69059032 TATTTCAATAATTTCACAAACCAATGG
1 TATTTCGGTAATTTCACAATCGAGGGG
* * * *
69059059 TATTTTGGTAATTTTACAAACTAGGGG
1 TATTTCGGTAATTTCACAATCGAGGGG
* * *
69059086 TATTTTGGTAATTCTACCCTAT--AGGGG
1 TATTTCGGTAATT-T-CACAATCGAGGGG
*
69059113 TATTTCAGTAATTTCACAATCGA-GGG
1 TATTTCGGTAATTTCACAATCGAGGGG
***
69059139 TAAAACGGTAATTTCACAATCGAGGG
1 TATTTCGGTAATTTCACAATCGAGGG
69059165 TAAAACAGTA
Statistics
Matches: 100, Mismatches: 27, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
25 4 0.04
26 26 0.26
27 67 0.67
28 1 0.01
29 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (27 bp):
TATTTCGGTAATTTCACAATCGAGGGG
Found at i:69059149 original size:26 final size:26
Alignment explanation
Indices: 69059118--69059204 Score: 113
Period size: 26 Copynumber: 3.3 Consensus size: 26
69059108 AGGGGTATTT
69059118 CAGTAATTTCACAATCGAGGGTAAAA
1 CAGTAATTTCACAATCGAGGGTAAAA
*
69059144 CGGTAATTTCACAATCGAGGGTAAAA
1 CAGTAATTTCACAATCGAGGGTAAAA
* **
69059170 CAGTAATTCTGTA-AATTAAGGGTAAAA
1 CAGTAATT-T-CACAATCGAGGGTAAAA
69059197 CAGTAATT
1 CAGTAATT
69059205 CTATAAATCG
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 32 0.59
27 21 0.39
28 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (26 bp):
CAGTAATTTCACAATCGAGGGTAAAA
Found at i:69059218 original size:27 final size:27
Alignment explanation
Indices: 69059130--69059220 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
69059120 GTAATTTCAC
* *
69059130 AATCGAGGGTAAAACGGTAATT-TCA-C
1 AATCGAGGGTAAAACAGTAATTCT-ATA
*
69059156 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
**
69059183 AATTAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
69059210 AATCGAGGGTA
1 AATCGAGGGTA
69059221 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 21 0.38
27 34 0.62
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:69066640 original size:40 final size:40
Alignment explanation
Indices: 69066549--69066641 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 40
69066539 ACTACTCGTT
* *
69066549 CAAATGCCTTCAGGACATAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAGTTATAGTAACTCGCA
*
69066589 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAG-TTATAGTAACTCGCA
*
69066629 CGAATGCCTTCGG
1 CAAATGCCTTCGG
69066642 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 46 0.96
41 2 0.04
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCAGTTATAGTAACTCGCA
Found at i:69074558 original size:40 final size:40
Alignment explanation
Indices: 69074521--69074706 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
69074511 GCTACTCGTT
*
69074521 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69074561 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
69074601 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
69074641 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69074682 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69074707 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69076238 original size:45 final size:44
Alignment explanation
Indices: 69076095--69076266 Score: 179
Period size: 45 Copynumber: 3.8 Consensus size: 44
69076085 GGTTGAGCAT
*
69076095 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * * *
69076140 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GATGTAACTAG-GCAT
1 -CCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
69076186 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* **
69076231 CCCAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69076267 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 12, Indels: 17
0.79 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 64 0.60
46 32 0.30
47 4 0.04
48 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (44 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:69079214 original size:15 final size:15
Alignment explanation
Indices: 69079175--69079254 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
69079165 GTATCTTGGG
*
69079175 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
69079190 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
69079205 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
69079220 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
69079235 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
69079249 TTTCTT
1 TTTCTT
69079255 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:69079244 original size:30 final size:30
Alignment explanation
Indices: 69079166--69079253 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
69079156 CATAGTATCG
* * *
69079166 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
69079196 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
69079226 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
69079254 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:69081667 original size:46 final size:45
Alignment explanation
Indices: 69081617--69081792 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
69081607 TGGTTGAGCA
69081617 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
69081663 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
69081710 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * **
69081756 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69081793 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:69081773 original size:93 final size:93
Alignment explanation
Indices: 69081614--69081783 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
69081604 GGATGGTTGA
* *
69081614 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69081679 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
69081707 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69081772 TGAGTCCGAGTT
66 TGAGTCCGAGTT
69081784 TGCTTATGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:69085554 original size:28 final size:29
Alignment explanation
Indices: 69085489--69085587 Score: 112
Period size: 28 Copynumber: 3.4 Consensus size: 29
69085479 AGTGAATCCA
*
69085489 CACACTTAGTGCTATATACATTC-AGCTCG
1 CACACTTAGTGCTATATA-ATTCAAACTCG
69085518 CACACTTAGTGCTATATAA-TCAAACTCG
1 CACACTTAGTGCTATATAATTCAAACTCG
* * * * *
69085546 CACACTTAGTACTGTACAATTTTAAACCCG
1 CACACTTAGTGCTATATAA-TTCAAACTCG
69085576 CACACTTAGTGC
1 CACACTTAGTGC
69085588 CAATCTTGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 22 0.37
29 18 0.30
30 18 0.30
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCTATATAATTCAAACTCG
Found at i:69086066 original size:2 final size:2
Alignment explanation
Indices: 69086059--69086084 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
69086049 TAATGGCCGA
69086059 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
69086085 GTACAATGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69087806 original size:16 final size:16
Alignment explanation
Indices: 69087787--69087817 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69087777 CTTCTTCACT
69087787 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
69087803 TACTTACTTACTTAA
1 TACTCACTTACTTAA
69087818 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:69087823 original size:20 final size:20
Alignment explanation
Indices: 69087784--69087823 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
69087774 AAACTTCTTC
* *
69087784 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
69087804 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
69087824 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:69088194 original size:55 final size:53
Alignment explanation
Indices: 69088061--69088257 Score: 164
Period size: 55 Copynumber: 3.6 Consensus size: 53
69088051 AACTTACCAT
* *
69088061 TGCCATGTCTTGATATGGTCTTACATGGTATCCTTGCCTTATGAACTCAGCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCAGCAA
* * * * *
69088114 TGCCATGCCTTGGCATTGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCAGCAA
* *** * * *
69088169 TGGCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCAGCAA
* * * *
69088223 TTTCCATGCCTTGGCATGGTCTTACATGGTATCCT
1 -TGCCATGTCTTGACATGGTCTTACATGGGATCCT
69088258 AAAACCCTAA
Statistics
Matches: 115, Mismatches: 23, Indels: 10
0.78 0.16 0.07
Matches are distributed among these distances:
52 2 0.02
53 37 0.32
54 8 0.07
55 66 0.57
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCAGCAA
Found at i:69092143 original size:30 final size:30
Alignment explanation
Indices: 69092107--69092166 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69092097 AGCTGAGCTG
69092107 AGGGGCAAAAGTGTAAATATGCAAAAGTTT
1 AGGGGCAAAAGTGTAAATATGCAAAAGTTT
* * *
69092137 AGGGGCAAAATTGTAATTTTGCAAAAGTTT
1 AGGGGCAAAAGTGTAAATATGCAAAAGTTT
69092167 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
AGGGGCAAAAGTGTAAATATGCAAAAGTTT
Found at i:69098274 original size:40 final size:40
Alignment explanation
Indices: 69098219--69098403 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
69098209 CGGATGATAA
* **
69098219 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
69098259 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
69098299 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
69098339 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
69098379 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
69098404 AGCAAGTAGT
Statistics
Matches: 138, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 137 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69098418 original size:80 final size:80
Alignment explanation
Indices: 69098215--69098431 Score: 296
Period size: 80 Copynumber: 2.7 Consensus size: 80
69098205 TATTCGGATG
* * *
69098215 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTATTATA-TCCGGGCTAAGTCCCGAAGGC
69098279 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * * * *
69098295 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTATTATATCCGGGCTAAGTCCCGAAGGCA
69098360 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
69098375 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGTTATATTC-GGCTAAATCCC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTA-TTATATCCGGGCTAAGTCCC
69098432 AAAGATGCTT
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
79 12 0.10
80 110 0.89
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTATTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:69098703 original size:22 final size:21
Alignment explanation
Indices: 69098662--69098705 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
69098652 GAATGTGCAT
69098662 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
69098684 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
69098706 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:69103046 original size:42 final size:43
Alignment explanation
Indices: 69102939--69103055 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
69102929 GAGACACACG
* * **
69102939 ATATCCCAGATATGGTCTTACATGGGATCTCATATCAATGCCA
1 ATATCCCAAATATGGTCTTACACGAAATCTCATATCAATGCCA
* ** * **
69102982 ATAGCCCATCTATGGTCTTACACGAAATCTCGTATCGGTGCC-
1 ATATCCCAAATATGGTCTTACACGAAATCTCATATCAATGCCA
69103024 ATATCCCAAATATGGTCTTACACGTAAA-CTCA
1 ATATCCCAAATATGGTCTTACACG-AAATCTCA
69103056 AATAACCCTA
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 24 0.40
43 36 0.60
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (43 bp):
ATATCCCAAATATGGTCTTACACGAAATCTCATATCAATGCCA
Found at i:69107024 original size:40 final size:40
Alignment explanation
Indices: 69106850--69107034 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
69106840 TCGAATGATG
* * *
69106850 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
69106890 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69106930 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69106970 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
69107011 -CCGGGCCATGTCCC-AAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69107035 AACGAGTGGC
Statistics
Matches: 128, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
39 10 0.08
40 108 0.84
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69119659 original size:27 final size:27
Alignment explanation
Indices: 69119629--69119691 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
69119619 TTATAGAATG
69119629 GCTCAGTTGGAATTGAAAGAATTGAAA
1 GCTCAGTTGGAATTGAAAGAATTGAAA
69119656 GCTCAGTTGGAATTGAAAGAATTGAAA
1 GCTCAGTTGGAATTGAAAGAATTGAAA
69119683 GCTCAGTTG
1 GCTCAGTTG
69119692 CAGGAATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.37, C:0.10, G:0.27, T:0.27
Consensus pattern (27 bp):
GCTCAGTTGGAATTGAAAGAATTGAAA
Found at i:69124467 original size:29 final size:29
Alignment explanation
Indices: 69124435--69124570 Score: 148
Period size: 29 Copynumber: 4.7 Consensus size: 29
69124425 ATACCCTTCG
** * * *
69124435 AGCTCGCACACCCAGTGCCGTATTTTTCT
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
69124464 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69124493 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
69124522 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69124551 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
69124571 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:69124502 original size:58 final size:58
Alignment explanation
Indices: 69124410--69124561 Score: 151
Period size: 58 Copynumber: 2.6 Consensus size: 58
69124400 AATTTAAGCC
* *** * * * * *
69124410 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCTAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACCCAGTGCCGTATATTTCCAGCA
* * * * ** *
69124468 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACCCAGTGCCGTATATTTCCAGCA
*
69124526 CGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACAC
69124562 TTAGTGCCAA
Statistics
Matches: 74, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
58 74 1.00
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACCCAGTGCCGTATATTTCCAGCA
Found at i:69133576 original size:23 final size:23
Alignment explanation
Indices: 69133545--69133604 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
69133535 TGTCCCCAAG
*
69133545 CACATGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
* *
69133568 CATACGGGCGTGTGTATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
69133591 CACACGGGCGTGTG
1 CACACGGGCGTGTG
69133605 AGGCTTTAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.13, C:0.28, G:0.33, T:0.25
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGCCTC
Found at i:69140878 original size:28 final size:28
Alignment explanation
Indices: 69140846--69140944 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
69140836 GCAATAAGCC
*
69140846 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
69140874 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
69140902 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
69140931 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69140945 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:69152103 original size:79 final size:81
Alignment explanation
Indices: 69152002--69152186 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
69151992 ACGACTCGCT
** *
69152002 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGA-CTCGCACGAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TA-TGATCTCGCACGAATGCCTTC-GGATCCTAACC
* *
69152064 CGGGTTTAGTAACTT-GCA
63 CGGATATAGTAACTTAGCA
* **
69152082 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTATGATCTCGCACGAATGCCTTCGGATCCTAACCCGG
*
69152146 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
69152162 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69152187 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 5 0.05
79 52 0.57
80 34 0.37
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTATGATCTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:69152127 original size:39 final size:40
Alignment explanation
Indices: 69151995--69152186 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
69151985 GGATATAACG
* * * *
69151995 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
69152035 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
69152075 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * ** * *
69152114 TCTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAGTA
* * *
69152154 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
69152187 CATCATTCGA
Statistics
Matches: 124, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 80 0.65
41 12 0.10
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:69157955 original size:20 final size:22
Alignment explanation
Indices: 69157924--69157963 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
69157914 AAATGTAAAG
69157924 TTCTGAAAATTAATA-AAAAAA
1 TTCTGAAAATTAATAGAAAAAA
69157945 TTCTG-AAATTAATAGAAAA
1 TTCTGAAAATTAATAGAAAA
69157964 TAAGTGGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.30
Consensus pattern (22 bp):
TTCTGAAAATTAATAGAAAAAA
Found at i:69160322 original size:31 final size:31
Alignment explanation
Indices: 69160279--69160342 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
69160269 CGTTTTCATA
69160279 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
69160310 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
69160341 TT
1 TT
69160343 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:69160586 original size:24 final size:24
Alignment explanation
Indices: 69160535--69160700 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
69160525 GCTTTATCAT
*
69160535 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
69160560 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
69160584 ATAATTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
69160607 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
69160631 ATAACTGGGGCACAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
69160655 ATAACTGGGGCACAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69160678 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69160701 GCACTTCTTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69160638 original size:71 final size:71
Alignment explanation
Indices: 69160535--69160701 Score: 255
Period size: 71 Copynumber: 2.3 Consensus size: 71
69160525 GCTTTATCAT
* * * *
69160535 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAATTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCACAA
69160599 GCCCTTTA
64 GCCCTTTA
* *
69160607 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCACAAGCCCTTTTGATAACTGGGGCACAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCACAAGC
69160672 CCTTTA
66 CCTTTA
69160678 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
69160702 CACTTCTTCC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCACAAGC
CCTTTA
Found at i:69160701 original size:47 final size:48
Alignment explanation
Indices: 69160535--69160700 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 48
69160525 GCTTTATCAT
*
69160535 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTA
* * *
69160584 ATAATTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTA
* * *
69160631 ATAACTGGGGCACAAGCCCTTTTGATAACTGGGGCACAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTA
69160678 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69160701 GCACTTCTTC
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 68 0.65
48 26 0.25
49 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTA
Found at i:69160774 original size:20 final size:20
Alignment explanation
Indices: 69160746--69160796 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
69160736 GCATTTATGA
*
69160746 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
69160766 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
69160786 ACATATCATGT
1 ACATATCATGT
69160797 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:69160861 original size:25 final size:25
Alignment explanation
Indices: 69160833--69160880 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
69160823 ATATATAAAC
* *
69160833 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
69160858 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
69160881 CATATTAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:69169491 original size:40 final size:40
Alignment explanation
Indices: 69169396--69169608 Score: 323
Period size: 38 Copynumber: 5.5 Consensus size: 40
69169386 CGGATGATAA
69169396 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
69169436 --GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
69169474 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
**
69169514 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTAC-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
69169552 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTT
*
69169592 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69169609 TACTTGGTTG
Statistics
Matches: 163, Mismatches: 5, Indels: 12
0.91 0.03 0.07
Matches are distributed among these distances:
38 71 0.44
39 28 0.17
40 64 0.39
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:69169556 original size:78 final size:80
Alignment explanation
Indices: 69169392--69169608 Score: 331
Period size: 78 Copynumber: 2.8 Consensus size: 80
69169382 TACTCGGATG
69169392 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT--GGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCA
69169455 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
**
69169470 ATTTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCA
69169535 -TTGTGCGAGTTAC-
66 TTTGTGCGAGTTACT
* * *
69169548 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTTCCGGGCTAAGTCCCGAAGG
69169609 TACTTGGTTG
Statistics
Matches: 129, Mismatches: 7, Indels: 8
0.90 0.05 0.06
Matches are distributed among these distances:
76 8 0.06
77 8 0.06
78 81 0.63
79 13 0.10
80 19 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:69177633 original size:40 final size:40
Alignment explanation
Indices: 69177578--69177727 Score: 264
Period size: 40 Copynumber: 3.8 Consensus size: 40
69177568 GATGATAACT
69177578 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTC
*
69177618 GGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATTTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTC
* *
69177658 GAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTC
*
69177698 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
69177728 AGCTATATCT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTC
Found at i:69182658 original size:46 final size:45
Alignment explanation
Indices: 69182551--69182771 Score: 191
Period size: 46 Copynumber: 4.8 Consensus size: 45
69182541 TTTGAGTGTG
* * *
69182551 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGAC-A
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCG-CCTCGAGACGA
*
69182597 AGACCTAGTGCAAGACATGTCTGGGACAT-GCATCAGCCTCGAGACGTA
1 AG-CC-AGTGTAAGACATGTCTGGGACATGGCATC-GCCTCGAGACG-A
* *
69182645 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACGAGATGA
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATC-GCCTCGAGACGA
* * * *
69182690 TAGTCAGTGTAAGACAATGTCTGGGAC-TGGCATCGACTTGAGA-TA
1 -AGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGCCTCGAGACGA
* *
69182735 TGAGCCAATGTAAGACCATGTCTAGGACATGGCATCG
1 --AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCG
69182772 GCACCTTACC
Statistics
Matches: 147, Mismatches: 17, Indels: 21
0.79 0.09 0.11
Matches are distributed among these distances:
45 2 0.01
46 91 0.62
47 43 0.29
48 11 0.07
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGCCTCGAGACGA
Found at i:69182711 original size:93 final size:93
Alignment explanation
Indices: 69182551--69182773 Score: 233
Period size: 93 Copynumber: 2.4 Consensus size: 93
69182541 TTTGAGTGTG
* * * * *
69182551 AGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACATTGAGA-CA-AGACCTAGTGCAAGAC
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATCGGCCA-CGAGATGATAG-TC-AGTGCAAGAC
* *
69182613 ATGTCTGGGACAT-GCATCAGCCTCGAGACGTA
63 ATGTCTGGGAC-TGGCATC-GACTCGAGACATA
* * *
69182645 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAGATGATAGTCAGTGTAAGACAAT
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATCGGCCACGAGATGATAGTCAGTGCAAGAC-AT
* * *
69182708 GTCTGGGACTGGCATCGACTTGAGATATG
65 GTCTGGGACTGGCATCGACTCGAGACATA
69182737 AGCCAATGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATCGGC
69182774 ACCTTACCCA
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
92 39 0.36
93 47 0.43
94 23 0.21
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.21
Consensus pattern (93 bp):
AGCCAATGTAAGACCATGTCTAGGACATGGCATCGGCCACGAGATGATAGTCAGTGCAAGACATG
TCTGGGACTGGCATCGACTCGAGACATA
Found at i:69184451 original size:40 final size:40
Alignment explanation
Indices: 69184407--69184496 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
69184397 CGGAATACAA
* *
69184407 CCGGATATAACCACGT-GCACGAA-TGCCTTCGTGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATTGCCTTCGGGTCTTAAC
* *
69184447 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
69184487 CCGGATATAA
1 CCGGATATAA
69184497 TTTCCAGCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 3 0.07
40 39 0.93
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
Found at i:69186783 original size:15 final size:15
Alignment explanation
Indices: 69186763--69186813 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
69186753 AGACACACAG
69186763 GTGTGTGTCTCGGCC
1 GTGTGTGTCTCGGCC
* *
69186778 GTGTGTGACACACGG--
1 GTGTGTG--TCTCGGCC
69186793 GTGTGTGTCTCGGCC
1 GTGTGTGTCTCGGCC
69186808 GTGTGT
1 GTGTGT
69186814 AACACACGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 4 0.14
15 20 0.71
17 4 0.14
ACGTcount: A:0.06, C:0.22, G:0.41, T:0.31
Consensus pattern (15 bp):
GTGTGTGTCTCGGCC
Found at i:69186821 original size:30 final size:30
Alignment explanation
Indices: 69186755--69186822 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
69186745 ACACGGGTAG
* *
69186755 ACACACAGGTGTGTGTCTCGGCCGTGTGTG
1 ACACACGGGTGTGTGTCTCGGCCGTGTGTA
69186785 ACACACGGGTGTGTGTCTCGGCCGTGTGTA
1 ACACACGGGTGTGTGTCTCGGCCGTGTGTA
69186815 ACACACGG
1 ACACACGG
69186823 TATTCCCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (30 bp):
ACACACGGGTGTGTGTCTCGGCCGTGTGTA
Found at i:69193610 original size:46 final size:46
Alignment explanation
Indices: 69193503--69193725 Score: 179
Period size: 46 Copynumber: 4.8 Consensus size: 46
69193493 ATTTGAGTGT
* * *
69193503 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TCGAGACGA
* * *
69193551 GAGCTAGTGTAAGA-CATGTCTAGGACATGCACCGGGCTCGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATC-GGCTCGAGACG-A
* *
69193598 -AGCCAGTGTAAGA-CATGTTTGGGACATGTC-TCGGCTACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCT-CGAGACGA
* * * * *
69193643 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGA-TA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGAGACGA
* * *
69193689 TGAGCCAGTGTAA-AACTTGACTGGGACATGGCATCGG
1 -GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG
69193726 TACCTTACCC
Statistics
Matches: 144, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
45 5 0.03
46 75 0.52
47 45 0.31
48 19 0.13
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGACGA
Found at i:69195128 original size:27 final size:26
Alignment explanation
Indices: 69195080--69195131 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69195070 GCGAGGCTTC
*
69195080 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
69195106 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
69195132 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:69212309 original size:46 final size:45
Alignment explanation
Indices: 69212257--69212460 Score: 188
Period size: 46 Copynumber: 4.5 Consensus size: 45
69212247 GTCGATGCCG
* * *
69212257 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
*
69212303 TGTCCCATACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
69212347 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
69212393 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
69212439 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
69212461 AGCCCTCGTC
Statistics
Matches: 137, Mismatches: 11, Indels: 20
0.82 0.07 0.12
Matches are distributed among these distances:
43 5 0.04
44 32 0.23
45 4 0.03
46 96 0.70
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:69212460 original size:92 final size:91
Alignment explanation
Indices: 69212300--69212516 Score: 249
Period size: 92 Copynumber: 2.4 Consensus size: 91
69212290 CCGTGCTGAC
*
69212300 GCATGTCCCATACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
1 GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
* * *
69212364 ACACTGGCTATCATCTCGAGGCCGAT
66 ACACTAGCCATCATCTCAAGGCCGAT
* * * * *
69212390 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACATGTC
1 GCATGTCCCATACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACATGTC
* * * *
69212454 TTACACTAGCCCTCGTCTCAATGCCGAT
64 TGACACTAGCCATCATCTCAAGGCCGAT
*
69212482 GCCATGTCTCATACATGGTCTTACACTGGCACACA
1 G-CATGTCCCATACAT-GTCTTACACTGGC-CACA
69212517 AATCTCATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
90 25 0.24
92 50 0.48
93 14 0.13
94 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (91 bp):
GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
ACACTAGCCATCATCTCAAGGCCGAT
Found at i:69212483 original size:46 final size:44
Alignment explanation
Indices: 69212300--69212508 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 44
69212290 CCGTGCTGAC
* *
69212300 GCATGTCCCATACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * *
69212344 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
69212390 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
69212436 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* *
69212482 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
69212509 GGCACACAAA
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 27 0.20
45 4 0.03
46 77 0.56
47 15 0.11
48 10 0.07
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:69218403 original size:46 final size:45
Alignment explanation
Indices: 69218351--69218554 Score: 188
Period size: 46 Copynumber: 4.5 Consensus size: 45
69218341 GTCGATGCCG
* * *
69218351 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
*
69218397 TGTCCCATACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
69218441 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
69218487 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
69218533 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
69218555 AGCCCTCGTC
Statistics
Matches: 137, Mismatches: 11, Indels: 20
0.82 0.07 0.12
Matches are distributed among these distances:
43 5 0.04
44 32 0.23
45 4 0.03
46 96 0.70
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:69218554 original size:92 final size:91
Alignment explanation
Indices: 69218394--69218610 Score: 249
Period size: 92 Copynumber: 2.4 Consensus size: 91
69218384 CCGTGCTGAC
*
69218394 GCATGTCCCATACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
1 GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
* * *
69218458 ACACTGGCTATCATCTCGAGGCCGAT
66 ACACTAGCCATCATCTCAAGGCCGAT
* * * * *
69218484 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACATGTC
1 GCATGTCCCATACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACATGTC
* * * *
69218548 TTACACTAGCCCTCGTCTCAATGCCGAT
64 TGACACTAGCCATCATCTCAAGGCCGAT
*
69218576 GCCATGTCTCATACATGGTCTTACACTGGCACACA
1 G-CATGTCCCATACAT-GTCTTACACTGGC-CACA
69218611 AATCTCATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
90 25 0.24
92 50 0.48
93 14 0.13
94 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (91 bp):
GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
ACACTAGCCATCATCTCAAGGCCGAT
Found at i:69218577 original size:46 final size:44
Alignment explanation
Indices: 69218394--69218602 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 44
69218384 CCGTGCTGAC
* *
69218394 GCATGTCCCATACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * *
69218438 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
69218484 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
69218530 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* *
69218576 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
69218603 GGCACACAAA
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 27 0.20
45 4 0.03
46 77 0.56
47 15 0.11
48 10 0.07
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:69224936 original size:17 final size:18
Alignment explanation
Indices: 69224894--69224942 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69224884 AGTTGAAAAG
69224894 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69224913 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69224930 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69224943 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69225827 original size:40 final size:40
Alignment explanation
Indices: 69225761--69225927 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
69225751 AAATTGAATG
* * *
69225761 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
69225800 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69225840 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69225880 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69225920 ATATCCGG
1 ATATCCGG
69225928 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69232927 original size:17 final size:18
Alignment explanation
Indices: 69232885--69232933 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69232875 AGTTGAAAAG
69232885 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69232904 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69232921 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69232934 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69233818 original size:40 final size:39
Alignment explanation
Indices: 69233752--69233917 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
69233742 AAATTGAATG
* * *
69233752 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
69233791 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
69233830 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
69233870 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
69233910 ATATCCGG
1 ATATCCGG
69233918 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:69239258 original size:40 final size:38
Alignment explanation
Indices: 69239142--69239259 Score: 182
Period size: 38 Copynumber: 3.1 Consensus size: 38
69239132 AACATATGAT
*
69239142 GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTG
1 GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTA
*
69239180 GTATTATATCCGGGTTAAATCCTGCAGGCTTAATGCTA
1 GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTA
* *
69239218 GTATTATATCTGGGTTTAAAGTCCCGCAGGCTTTATGCTA
1 GTATTATATCCGGG-TTAAA-TCCCGCAGGCTTAATGCTA
69239258 GT
1 GT
69239260 GACTGGATTC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 49 0.67
39 5 0.07
40 19 0.26
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.35
Consensus pattern (38 bp):
GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTA
Found at i:69251781 original size:19 final size:19
Alignment explanation
Indices: 69251759--69251797 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
69251749 AGTGCTCTGG
69251759 AAGTGTCTAAGAAGTCCTA
1 AAGTGTCTAAGAAGTCCTA
69251778 AAGTGTCTAAGAAGTCCTA
1 AAGTGTCTAAGAAGTCCTA
69251797 A
1 A
69251798 GTTCAAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (19 bp):
AAGTGTCTAAGAAGTCCTA
Found at i:69254505 original size:49 final size:49
Alignment explanation
Indices: 69254449--69254622 Score: 258
Period size: 49 Copynumber: 3.5 Consensus size: 49
69254439 CAGGTACGCA
*
69254449 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATG
* ** * *
69254498 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATAATCCGGTACATG
* * *
69254548 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATG
69254597 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
69254623 CGTGGCCTCA
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
49 67 0.61
50 43 0.39
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATG
Found at i:69256504 original size:26 final size:26
Alignment explanation
Indices: 69256472--69256521 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
69256462 CATATACTGA
69256472 TACTGGCAGCTTTGCTGCGATATTAT
1 TACTGGCAGCTTTGCTGCGATATTAT
*
69256498 TACTGGCAGCTTTGTTGCGATATT
1 TACTGGCAGCTTTGCTGCGATATT
69256522 GGTGTGTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGATATTAT
Found at i:69262327 original size:28 final size:28
Alignment explanation
Indices: 69262295--69262352 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
69262285 GTATAGGGAC
69262295 TTAGTCAATTGTGAATGTGTTATTACGA
1 TTAGTCAATTGTGAATGTGTTATTACGA
69262323 TTAGTCAATTGTGAATGTGTTATTACGA
1 TTAGTCAATTGTGAATGTGTTATTACGA
69262351 TT
1 TT
69262353 TAGCCAAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (28 bp):
TTAGTCAATTGTGAATGTGTTATTACGA
Found at i:69264880 original size:43 final size:43
Alignment explanation
Indices: 69264819--69265026 Score: 242
Period size: 43 Copynumber: 4.9 Consensus size: 43
69264809 GTTACATGTA
* *
69264819 TCGCATCCATTATGAACTCAGACCACTCAACGAGCTTAGATGC
1 TCGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGC
*
69264862 TCGCATCCATAATGAACTCAGACCACTCAACGAGCTTAGATGC
1 TCGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGC
69264905 TCGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGC
* ** * * * *
69264948 -CACATATATCATGAACAT-GGACCACTCAACAAGCTCAGATTC
1 TCGCATCCATAATGAAC-TCAGACCACTCAACGAGCTCAGATGC
** * * *
69264990 T-GACATATATCACGAACTCAGACCGCTCAACGAGCTC
1 TCG-CATCCATAATGAACTCAGACCACTCAACGAGCTC
69265027 GGATTTCTTA
Statistics
Matches: 147, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
42 34 0.23
43 113 0.77
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.21
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGC
Found at i:69265019 original size:85 final size:86
Alignment explanation
Indices: 69264832--69265026 Score: 225
Period size: 85 Copynumber: 2.3 Consensus size: 86
69264822 CATCCATTAT
* * * *
69264832 GAACTCAGACCACTCAACGAGCTTAGATGCTCGCATCCATAATGAACTCAGACCACTCAACGAGC
1 GAACTCAGACCACTCAACGAGCTCAGATGCTCACATACATAATGAACTCAGACCACTCAACAAGC
* * *
69264897 TTAGATGCTCGCATCCATAAT
66 TCAGATGCTCGCATACATAAC
* * *
69264918 GAACTCAGACCACTCAACGAGCTCAGATGC-CACATATATCATGAACAT-GGACCACTCAACAAG
1 GAACTCAGACCACTCAACGAGCTCAGATGCTCACATACATAATGAAC-TCAGACCACTCAACAAG
* * *
69264981 CTCAGATTCT-GACATATATCAC
65 CTCAGATGCTCG-CATACATAAC
*
69265003 GAACTCAGACCGCTCAACGAGCTC
1 GAACTCAGACCACTCAACGAGCTC
69265027 GGATTTCTTA
Statistics
Matches: 93, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
84 1 0.01
85 62 0.67
86 30 0.32
ACGTcount: A:0.34, C:0.31, G:0.16, T:0.19
Consensus pattern (86 bp):
GAACTCAGACCACTCAACGAGCTCAGATGCTCACATACATAATGAACTCAGACCACTCAACAAGC
TCAGATGCTCGCATACATAAC
Found at i:69267914 original size:48 final size:48
Alignment explanation
Indices: 69267855--69268081 Score: 283
Period size: 48 Copynumber: 4.7 Consensus size: 48
69267845 ATGGCATTGC
* *
69267855 GATCCCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATGTGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
** * *
69267903 GATCCCATGTAAGACCATGTCTGGGACATCACATTGGCATCAACATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * *
69267951 AATCTCATGTAAGACCATGTCTAGGTCATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * *
69267999 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGTTACGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
** * * *
69268047 GATTTCGTGTAAGACCATGTCTAGGACATGCCATT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATT
69268082 AATATAGACA
Statistics
Matches: 150, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 150 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:69272342 original size:27 final size:27
Alignment explanation
Indices: 69272306--69272530 Score: 310
Period size: 27 Copynumber: 8.4 Consensus size: 27
69272296 ATATATACAT
69272306 CACAT-AGGGCAAAACAGTCATCTT-AC
1 CACATAAGGGCAAAACAGTCAT-TTCAC
*
69272332 CAAATAAGGGCAAAACAGTCATTTCAC
1 CACATAAGGGCAAAACAGTCATTTCAC
*
69272359 CACATAAGGGCAAAACAATCATTTCAC
1 CACATAAGGGCAAAACAGTCATTTCAC
* *
69272386 CACATAAAGGCAAAATAGTCATTTCAC
1 CACATAAGGGCAAAACAGTCATTTCAC
69272413 CACATAAGGGCAAAACAGTCATTTCAC
1 CACATAAGGGCAAAACAGTCATTTCAC
* * **
69272440 CATATAAGGGCAAAATAGTCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTCAC
* * * *
69272467 CAAATAAGGGCAAAATAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTCAC
*
69272494 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTCAC
69272521 CACATAAGGG
1 CACATAAGGG
69272531 GTCTAGGTAA
Statistics
Matches: 179, Mismatches: 18, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
26 6 0.03
27 173 0.97
ACGTcount: A:0.42, C:0.22, G:0.15, T:0.21
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTCAC
Found at i:69281940 original size:42 final size:42
Alignment explanation
Indices: 69281893--69281999 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
69281883 TATTGGTCTC
69281893 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
69281935 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
69281977 GGCACTATGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
69282000 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:69282064 original size:27 final size:28
Alignment explanation
Indices: 69282007--69282076 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
69281997 AAAATTGTAC
**
69282007 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
69282035 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
69282062 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69282077 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:69292398 original size:14 final size:13
Alignment explanation
Indices: 69292374--69292403 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
69292364 GGTTGTTTAT
69292374 TAAACTAATTAAC
1 TAAACTAATTAAC
69292387 TAAACTTAATTAAC
1 TAAAC-TAATTAAC
69292401 TAA
1 TAA
69292404 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:69297726 original size:16 final size:16
Alignment explanation
Indices: 69297705--69297739 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
69297695 TTTCATAGTG
69297705 ATCATGAATTCATAAT
1 ATCATGAATTCATAAT
69297721 ATCATGAATTCATAAT
1 ATCATGAATTCATAAT
69297737 ATC
1 ATC
69297740 TTAAAGTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (16 bp):
ATCATGAATTCATAAT
Found at i:69304444 original size:20 final size:20
Alignment explanation
Indices: 69304421--69304590 Score: 167
Period size: 20 Copynumber: 8.8 Consensus size: 20
69304411 GATTGTGGAC
*
69304421 CTACTGATGGCTTTGTGCCG
1 CTACTGATGGCTTTGTGCCA
*
69304441 CTACAGATGGCTTTGTGCCA
1 CTACTGATGGCTTTGTGCCA
* *
69304461 CTATTGATGGCTTTGTGCCG
1 CTACTGATGGCTTTGTGCCA
* *
69304481 CTATTGATGGCTTGGTGCCA
1 CTACTGATGGCTTTGTGCCA
*
69304501 -TAATTGATGGCTTTGTGCCA
1 CT-ACTGATGGCTTTGTGCCA
69304521 CTACTGATGGCTTTG-G--A
1 CTACTGATGGCTTTGTGCCA
*
69304538 C--CT-A-GGCTTTGTACCA
1 CTACTGATGGCTTTGTGCCA
* * *
69304554 CTACTGAAGGCTTCGTGCCG
1 CTACTGATGGCTTTGTGCCA
*
69304574 CTACTCATGGCTTTGTG
1 CTACTGATGGCTTTGTG
69304591 TTAAATACTG
Statistics
Matches: 125, Mismatches: 16, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
13 7 0.06
14 1 0.01
15 2 0.02
16 2 0.02
17 2 0.02
18 2 0.02
19 3 0.02
20 105 0.84
21 1 0.01
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (20 bp):
CTACTGATGGCTTTGTGCCA
Found at i:69309261 original size:99 final size:100
Alignment explanation
Indices: 69309089--69309287 Score: 328
Period size: 99 Copynumber: 2.0 Consensus size: 100
69309079 TCGATCTGAA
* * *
69309089 ATTTCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATATTGAATTACATGTAAGACCAGGTCTG
1 ATTTCGTGTAAGACCCTATCTGGGACAAAGGCATCAATATTGAATTACATGTAAGACCACGTCTG
69309154 GGACGTTGGCATTGTAC-TTGTTTATGAGTATCTG
66 GGACGTTGGCATTGTACTTTGTTTATGAGTATCTG
* *
69309188 ATTTCGTGTAAGACCCTATCTGGGACAGAGGTATCAATATTGAATTACATGTAAGACCACGTCTG
1 ATTTCGTGTAAGACCCTATCTGGGACAAAGGCATCAATATTGAATTACATGTAAGACCACGTCTG
* *
69309253 GGATGTTGGCATTGTACTTTTTTTATGAGTATCTG
66 GGACGTTGGCATTGTACTTTGTTTATGAGTATCTG
69309288 TATCGCTTCA
Statistics
Matches: 92, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 76 0.83
100 16 0.17
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.34
Consensus pattern (100 bp):
ATTTCGTGTAAGACCCTATCTGGGACAAAGGCATCAATATTGAATTACATGTAAGACCACGTCTG
GGACGTTGGCATTGTACTTTGTTTATGAGTATCTG
Found at i:69314157 original size:50 final size:49
Alignment explanation
Indices: 69314093--69314475 Score: 376
Period size: 50 Copynumber: 7.7 Consensus size: 49
69314083 GTACGCATAC
* *
69314093 TAGCCTACGCTTAGTACTACACATGTGACCTAACAATCAGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCTAACAATC-GGTACACGTAG
* * *
69314143 TAGCCTGCACTTAGTACTACACA--CGACCTAACTATCAGATACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCTAACAATC-GGTACACGTAG
* * * ** *
69314191 TAGCCTCCACTTAGTACTACACATGTGA-TTGAAGCTATCGAGTATGCATAG
1 TAGCCTGCACTTAGTACTACACATGTGACCT-AA-CAATCG-GTACACGTAG
* * *
69314242 TAGCTTGCACTTAGTACCACACATGCGACCTAACAATCTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCTAACAATC-GGTACACGTAG
* * * *
69314292 TAGCCTGCACTTAGTACTACACACGTGACCTTACCATCGAATACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCTAACAATCG-GTACACGTAG
* * * ** * *
69314342 TAGCCTGCACTTAGTACTACACACGTGATCGAAGGTATCGGGTACCCATAG
1 TAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATC-GGTACACGTAG
* * *
69314393 TAGCCTTCAATTAGTACTACACATGCGACCTAACAATCTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGTGACCTAACAATC-GGTACACGTAG
* **
69314443 TAGCCTGCACTTAATACTACACACATGACCTAA
1 TAGCCTGCACTTAGTACTACACATGTGACCTAA
69314476 AACTGTCTTA
Statistics
Matches: 270, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
48 44 0.16
49 2 0.01
50 147 0.54
51 75 0.28
52 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACATGTGACCTAACAATCGGTACACGTAG
Found at i:69314386 original size:101 final size:99
Alignment explanation
Indices: 69314093--69314475 Score: 405
Period size: 101 Copynumber: 3.8 Consensus size: 99
69314083 GTACGCATAC
*
69314093 TAGCCTACGCTTAGTACTACACATGTGACCTAACAATC-AGGTACACGTAGTAGCCTGCACTTAG
1 TAGCCTACACTTAGTACTACACATGTGACCTAACAATCGA-GTACACGTAGTAGCCTGCACTTAG
*
69314157 TACTACACAC-GACCTAACTATCAGATACACGTAG
65 TACTACACACGGACCTAACTATCAGGTACACGTAG
* * * ** * *
69314191 TAGCCTCCACTTAGTACTACACATGTGA-TTGAAGCTATCGAGTATGCATAGTAGCTTGCACTTA
1 TAGCCTACACTTAGTACTACACATGTGACCT-AA-CAATCGAGTACACGTAGTAGCCTGCACTTA
* * * *
69314255 GTACCACACATGCGACCTAACAATCTGGTACACGTAG
64 GTACTACACACG-GACCTAACTATCAGGTACACGTAG
* * * * *
69314292 TAGCCTGCACTTAGTACTACACACGTGACCTTACCATCGAATACACGTAGTAGCCTGCACTTAGT
1 TAGCCTACACTTAGTACTACACATGTGACCTAACAATCGAGTACACGTAGTAGCCTGCACTTAGT
* * * * * *
69314357 ACTACACACGTGATCGAAGGTATCGGGTACCCATAG
66 ACTACACACG-GACCTAA-CTATCAGGTACACGTAG
* * * *
69314393 TAGCCTTCAATTAGTACTACACATGCGACCTAACAATCTG-GTACACGTAGTAGCCTGCACTTAA
1 TAGCCTACACTTAGTACTACACATGTGACCTAACAATC-GAGTACACGTAGTAGCCTGCACTTAG
*
69314457 TACTACACACATGACCTAA
65 TACTACACAC-GGACCTAA
69314476 AACTGTCTTA
Statistics
Matches: 232, Mismatches: 44, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
97 1 0.00
98 28 0.12
99 32 0.14
100 40 0.17
101 129 0.56
102 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (99 bp):
TAGCCTACACTTAGTACTACACATGTGACCTAACAATCGAGTACACGTAGTAGCCTGCACTTAGT
ACTACACACGGACCTAACTATCAGGTACACGTAG
Found at i:69314407 original size:151 final size:150
Alignment explanation
Indices: 69314103--69314475 Score: 563
Period size: 151 Copynumber: 2.5 Consensus size: 150
69314093 TAGCCTACGC
* *
69314103 TTAGTACTACACATGTGACCTAACAATCAGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-
1 TTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACT
* * *
69314167 GACCTAACTATCAGATACACGTAGTAGCCTCCACTTAGTACTACACATGTGATTGAAGCTATCGA
66 GACCTAACCATCAGATACACGTAGTAGCCTCCACTTAGTACTACACACGTGATCGAAGCTATCGA
** *
69314232 GTATGCATAGTAGCTTGCAC
131 GTACCCATAGTAGCTTGCAA
*
69314252 TTAGTACCACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
1 TTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-
* * *
69314317 TGACCTTACCATC-GAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGGTATC
65 TGACCTAACCATCAG-ATACACGTAGTAGCCTCCACTTAGTACTACACACGTGATCGAAGCTATC
*
69314381 GGGTACCCATAGTAGCCTT-CAA
129 GAGTACCCATAGTAG-CTTGCAA
*
69314403 TTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAATACTACACACA
1 TTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-
69314468 TGACCTAA
65 TGACCTAA
69314476 AACTGTCTTA
Statistics
Matches: 203, Mismatches: 17, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
149 61 0.30
150 1 0.00
151 138 0.68
152 3 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (150 bp):
TTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACT
GACCTAACCATCAGATACACGTAGTAGCCTCCACTTAGTACTACACACGTGATCGAAGCTATCGA
GTACCCATAGTAGCTTGCAA
Found at i:69316991 original size:30 final size:30
Alignment explanation
Indices: 69316955--69317047 Score: 161
Period size: 30 Copynumber: 3.1 Consensus size: 30
69316945 CCTTTTCATA
*
69316955 TTTCATATTTCATAATACTGGGCCGAAGCC
1 TTTCATATTTCATATTACTGGGCCGAAGCC
69316985 TTTCATATTTCATATTACTGGG-CGAAGCC
1 TTTCATATTTCATATTACTGGGCCGAAGCC
69317014 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 -TTTCATATTTCATATTACTGGGCCGAAGCC
69317045 TTT
1 TTT
69317048 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
29 7 0.12
30 46 0.77
31 7 0.12
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (30 bp):
TTTCATATTTCATATTACTGGGCCGAAGCC
Found at i:69317294 original size:24 final size:24
Alignment explanation
Indices: 69317243--69317385 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
69317233 GCTTTATCAT
*
69317243 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69317268 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
69317292 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69317315 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
69317339 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69317363 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69317386 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69317322 original size:47 final size:48
Alignment explanation
Indices: 69317243--69317384 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
69317233 GCTTTATCAT
* *
69317243 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
69317292 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
69317339 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
69317385 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:69317343 original size:71 final size:72
Alignment explanation
Indices: 69317242--69317385 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
69317232 TGCTTTATCA
*
69317242 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
69317307 GCCCTTT
66 GCCCTTT
* * **
69317314 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
69317377 AGCCCTTT
65 AGCCCTTT
69317385 T
1 T
69317386 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:69317457 original size:20 final size:20
Alignment explanation
Indices: 69317434--69317494 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
69317424 TTATGATTAC
69317434 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
69317454 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
69317474 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
69317494 A
1 A
69317495 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:69317569 original size:25 final size:25
Alignment explanation
Indices: 69317537--69317584 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69317527 ATACATAAAC
* * *
69317537 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69317562 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69317585 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69325031 original size:37 final size:34
Alignment explanation
Indices: 69324981--69325062 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 34
69324971 TTATTACGAA
**
69324981 GTCTTACCCGGACACATTCTCCACACGTAGTCATCGG
1 GTCTTACCCGG--ACATAATCCACACGTA-TCATCGG
*
69325018 GTCTTACCTGGACATAATCCACACGTATCATC-G
1 GTCTTACCCGGACATAATCCACACGTATCATCGG
*
69325051 GTCTCACCCGGA
1 GTCTTACCCGGA
69325063 ATATATTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
33 11 0.28
34 5 0.12
35 14 0.35
37 10 0.25
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.24
Consensus pattern (34 bp):
GTCTTACCCGGACATAATCCACACGTATCATCGG
Found at i:69325178 original size:48 final size:48
Alignment explanation
Indices: 69325107--69325566 Score: 696
Period size: 48 Copynumber: 9.7 Consensus size: 48
69325097 TGTTACAACA
* * *
69325107 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* * * *
69325155 TTCACATTCGCCATTCGGCTTTACGAC--ATACACATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* *
69325201 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACAACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCAC-ATATATAT
* *
69325250 TTCACATTAGCCATTCGGCTTTACCACATATACATATC-CACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
69325297 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* * *
69325345 TTCACATTAGCCATTCGGCTTTACCACACATACATATCA-ACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
*
69325392 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
69325440 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* * *
69325488 TTCACATTAGCCATTC-GCTTTACCACACATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
**
69325535 TTCACATTAGCCATTCGGCTTTATGACATATA
1 TTCACATTAGCCATTCGGCTTTACCACATATA
69325567 AAACACTTTC
Statistics
Matches: 379, Mismatches: 27, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
46 41 0.11
47 133 0.35
48 161 0.42
49 44 0.12
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
Found at i:69325346 original size:95 final size:95
Alignment explanation
Indices: 69325107--69325566 Score: 699
Period size: 95 Copynumber: 4.8 Consensus size: 95
69325097 TGTTACAACA
* * * *
69325107 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTTCACATTAGCCATTCG
* * * *
69325172 GCTTTACGACATACACATCT-CATATATAT
66 GCTTTACCACATATACATATCCACATATAT
* *
69325201 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACAACATGTATTTCACATTAGCCATTC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCAC-ATATATATTTCACATTAGCCATTC
*
69325266 GGCTTTACCACATATACATATCCACATGTAT
65 GGCTTTACCACATATACATATCCACATATAT
69325297 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTTCACATTAGCCATTCG
* * *
69325362 GCTTTACCACACATACATATCAACATGTAT
66 GCTTTACCACATATACATATCCACATATAT
*
69325392 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTTCACATTAGCCATTCG
*
69325457 GCTTTACCACATATACATATCACATATATAT
66 GCTTTACCACATATACATATC-CACATATAT
* * *
69325488 TTCACATTAGCCATTC-GCTTTACCACACATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTTCACATTAGCCATTCG
**
69325552 GCTTTATGACATATA
66 GCTTTACCACATATA
69325567 AAACACTTTC
Statistics
Matches: 337, Mismatches: 26, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
94 38 0.11
95 230 0.68
96 69 0.20
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (95 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCCACATATAT
Found at i:69329443 original size:40 final size:40
Alignment explanation
Indices: 69329394--69329663 Score: 364
Period size: 40 Copynumber: 6.8 Consensus size: 40
69329384 CCAGCATGAT
* * * *
69329394 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * * *
69329434 TACTTTTCGGGACTTAGTCCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
69329474 TGCTCTTCGGAACTTAGTCCGGATACATC-CTAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
69329513 TGCTCTTCGGAACTTAGTTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
69329553 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
69329593 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * *
69329633 TGCT-TTTGGGATTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
69329664 CTCAATTCTC
Statistics
Matches: 204, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 59 0.29
40 145 0.71
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:69329605 original size:119 final size:120
Alignment explanation
Indices: 69329394--69329663 Score: 364
Period size: 119 Copynumber: 2.3 Consensus size: 120
69329384 CCAGCATGAT
* * * * * * *
69329394 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATACTTTTCGGGACTTAGTCCGGTTG
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATACTCTTCAGAACTTAGTCCGGATA
*
69329459 CATTACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC-CTAGCACAAA
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACAAA
* ** *
69329513 TGCTCTTCGGAACTTAGTTCGGATACATCACTAGCACGAATGCTCTTCAGAACTTAGTCCGGATA
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATACTCTTCAGAACTTAGTCCGGATA
*
69329578 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACAAA
* * ** *
69329633 TGCT-TTTGGGATTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACCTAGCCCGGATACATCACT
69329664 CTCAATTCTC
Statistics
Matches: 131, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
119 118 0.90
120 13 0.10
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (120 bp):
TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATACTCTTCAGAACTTAGTCCGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACAAA
Found at i:69329623 original size:80 final size:80
Alignment explanation
Indices: 69329394--69329663 Score: 364
Period size: 79 Copynumber: 3.4 Consensus size: 80
69329384 CCAGCATGAT
* * * * * * * * *
69329394 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATACTTTTCGGGACTTAGTCCGGTTG
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
*
69329459 CATTACTAGCACGAA
66 CATCACTAGCACGAA
* *
69329474 TGCTCTTCGGAACTTAGTCCGGATACATC-CTAGCACAAATGCTCTTCGGAACTTAGTTCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
69329538 CATCACTAGCACGAA
66 CATCACTAGCACGAA
*
69329553 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
69329618 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* * * * *
69329633 TGCT-TTTGGGATTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
69329664 CTCAATTCTC
Statistics
Matches: 168, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
79 90 0.54
80 78 0.46
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
CATCACTAGCACGAA
Found at i:69331583 original size:37 final size:37
Alignment explanation
Indices: 69331533--69331618 Score: 154
Period size: 37 Copynumber: 2.3 Consensus size: 37
69331523 TTATTACGAA
69331533 GTCTTACCCGGACACAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACACAATCTCCACACGTAGTCATCGG
*
69331570 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACACAATCTCCACACGTAGTCATCGG
*
69331607 GTCTCACCCGGA
1 GTCTTACCCGGA
69331619 ATATATTTCC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACACAATCTCCACACGTAGTCATCGG
Found at i:69331734 original size:48 final size:48
Alignment explanation
Indices: 69331663--69332171 Score: 799
Period size: 48 Copynumber: 10.7 Consensus size: 48
69331653 TGTTACAACA
* * *
69331663 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* * * * *
69331711 TTCACATTCGCCATTCGGATTTACGACATATACACATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
69331759 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACA-A-ATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* *
69331805 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* *
69331853 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
*
69331901 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* * *
69331949 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
*
69331997 TTCACATTAGCCATTCGGCTTTACCACATATACATCTCACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
69332045 TTCACATTAGCCATT-GGCTTTACCACATATACATATCACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
* * *
69332092 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
**
69332140 TTCACATTAGCCATTCGGCTTTATGACATATA
1 TTCACATTAGCCATTCGGCTTTACCACATATA
69332172 AACACTTTCA
Statistics
Matches: 428, Mismatches: 30, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
46 45 0.11
47 48 0.11
48 335 0.78
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
Found at i:69331943 original size:13 final size:13
Alignment explanation
Indices: 69331925--69331955 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
69331915 TCGGCTTTAC
69331925 CACATATACATAT
1 CACATATACATAT
*
69331938 CACATATACATTT
1 CACATATACATAT
69331951 CACAT
1 CACAT
69331956 TAGCCATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (13 bp):
CACATATACATAT
Found at i:69339349 original size:40 final size:40
Alignment explanation
Indices: 69339290--69339547 Score: 375
Period size: 40 Copynumber: 6.5 Consensus size: 40
69339280 AAACCAAGTA
* * *
69339290 CCTTC-GGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
69339328 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69339368 CCTTCGGGACTTAGCCCAGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69339408 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69339448 CCTTCGGGACTTAGCCCGG-TCATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGAT-ATAGTAACTCGCACAAATG
69339488 CCTTCGGGACTT-GCCCGGTTATCATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATG
69339530 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69339548 TTATCATCGA
Statistics
Matches: 203, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
38 5 0.02
39 15 0.07
40 146 0.72
41 6 0.03
42 31 0.15
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69344617 original size:41 final size:41
Alignment explanation
Indices: 69344572--69344668 Score: 149
Period size: 41 Copynumber: 2.4 Consensus size: 41
69344562 TGGCATTACT
*
69344572 TGACAGCTTGTGTGAGTAGCATCGTGTAGCTACATCTTGAC
1 TGACAGCTTGTGTGAGTAGCACCGTGTAGCTACATCTTGAC
* **
69344613 TGACAGCTTGTGTGAGTAGCACCGTGTAGCTACATTTTGGT
1 TGACAGCTTGTGTGAGTAGCACCGTGTAGCTACATCTTGAC
*
69344654 TGATAGCTTGTGTGA
1 TGACAGCTTGTGTGA
69344669 TCAGGCCCGT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (41 bp):
TGACAGCTTGTGTGAGTAGCACCGTGTAGCTACATCTTGAC
Found at i:69352420 original size:41 final size:41
Alignment explanation
Indices: 69352369--69352510 Score: 221
Period size: 41 Copynumber: 3.5 Consensus size: 41
69352359 TGCAGTTACT
*
69352369 TGACAGCTTGTGTGAACAGCACCGTGTAGCTACGTCTTGAC
1 TGACAGCTTGTGTGAGCAGCACCGTGTAGCTACGTCTTGAC
*
69352410 TGACAGCTTGTGTGAGCAGCACTGTGTAGCTACGTCTTGAC
1 TGACAGCTTGTGTGAGCAGCACCGTGTAGCTACGTCTTGAC
* * *
69352451 TGAAAGCTTGTGTGAGCAGCATCGTGTAGCTACGTCTTGAT
1 TGACAGCTTGTGTGAGCAGCACCGTGTAGCTACGTCTTGAC
* *
69352492 TGATAGCTTGTTTGAGCAG
1 TGACAGCTTGTGTGAGCAG
69352511 ACCCGTTGAT
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 93 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (41 bp):
TGACAGCTTGTGTGAGCAGCACCGTGTAGCTACGTCTTGAC
Found at i:69358032 original size:46 final size:46
Alignment explanation
Indices: 69357965--69358231 Score: 392
Period size: 46 Copynumber: 5.8 Consensus size: 46
69357955 TGTAACCCGC
* * * * *
69357965 CCATAAGCGAACTCCGACTCAACTTAACGAGCTCGGTCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
69358011 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
69358057 CCATAAGTGAACTCGGACTCAACTTAATGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
** * *
69358103 CCATAAGTGAACTTAGACTCAACTCAACGAGCTT-GGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGTTCGCAT
*
69358149 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
69358195 CCATAAGTGAACTCGGGCTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69358232 TGCCCAAATA
Statistics
Matches: 198, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 2 0.01
46 194 0.98
47 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:69363200 original size:16 final size:16
Alignment explanation
Indices: 69363179--69363211 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69363169 TTATAACACC
*
69363179 CCAAAAATCTCGAAAT
1 CCAAAAAACTCGAAAT
69363195 CCAAAAAACTCGAAAT
1 CCAAAAAACTCGAAAT
69363211 C
1 C
69363212 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.27, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAAACTCGAAAT
Found at i:69364725 original size:29 final size:29
Alignment explanation
Indices: 69364684--69364794 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
69364674 ATGAATATAA
*
69364684 ATGATTTGGGCCTAATGGGCCATATGAAT
1 ATGAATTGGGCCTAATGGGCCATATGAAT
* *
69364713 GTGAATTGGGCCTAATGGGCCATAAGAAT
1 ATGAATTGGGCCTAATGGGCCATATGAAT
*
69364742 ATGAACTGGGCC-AGATGGGCCATATGAAT
1 ATGAATTGGGCCTA-ATGGGCCATATGAAT
* * *
69364771 A--AATTGGGCCCAGTGGACCATATG
1 ATGAATTGGGCCTAATGGGCCATATG
69364795 CATGTATGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 18 0.25
28 2 0.03
29 51 0.72
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (29 bp):
ATGAATTGGGCCTAATGGGCCATATGAAT
Found at i:69373748 original size:39 final size:39
Alignment explanation
Indices: 69373702--69373841 Score: 208
Period size: 39 Copynumber: 3.6 Consensus size: 39
69373692 GGACTAAGAT
* *
69373702 CCGAAGGCGTTCGTGCGAGTTAATAAATTCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* *
69373741 CCGAAGGCATTTGTACGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* * *
69373780 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-C
69373820 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
69373842 CTATAACCGG
Statistics
Matches: 92, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 70 0.76
40 22 0.24
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:69373836 original size:40 final size:39
Alignment explanation
Indices: 69373702--69373870 Score: 205
Period size: 39 Copynumber: 4.3 Consensus size: 39
69373692 GGACTAAGAT
* **
69373702 CCGAAGGCGTTCGTGCGAGTTAATAAATTCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* * *
69373741 CCGAAGGCATTTGTACGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
69373780 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAG-C
* * *
69373820 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGTTAAG-C
69373860 CCGAAGGCATT
1 CCGAAGGCATT
69373871 TGAGCTAGTC
Statistics
Matches: 118, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 70 0.59
40 39 0.33
41 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
Found at i:69373895 original size:79 final size:78
Alignment explanation
Indices: 69373731--69373880 Score: 187
Period size: 79 Copynumber: 1.9 Consensus size: 78
69373721 TTAATAAATT
* *
69373731 CGGGTTAAGCCCGAAGGCATTTGTACGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGC
1 CGGGTTAAGCCCGAAGGCATTCGTACGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGC
*
69373796 GAGTTACTAAACC
66 GAGTCACTAAACC
* * *
69373809 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTT
1 CGGGTTAAG-CCCGAAGGCATTCGTACGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTT
*
69373872 GAGCTAGTC
62 GAGCGAGTC
69373881 GTTATATCCG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
78 9 0.15
79 26 0.43
80 26 0.43
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (78 bp):
CGGGTTAAGCCCGAAGGCATTCGTACGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGC
GAGTCACTAAACC
Done.