Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 236 of 345
Found at i:69375349 original size:19 final size:20
Alignment explanation
Indices: 69375306--69375351 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
69375296 ATTGGGCATT
69375306 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
69375326 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
69375345 GCCCATA
1 GCCCATA
69375352 ACAAAATAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:69381035 original size:24 final size:24
Alignment explanation
Indices: 69381008--69381055 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
69380998 TAGTGAATAT
69381008 ATATATGAG-GTTATAATATGGTTA
1 ATATATGAGTGTT-TAATATGGTTA
* *
69381032 ATATATGTGTGTTTGATATGGTTA
1 ATATATGAGTGTTTAATATGGTTA
69381056 TATTGAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (24 bp):
ATATATGAGTGTTTAATATGGTTA
Found at i:69382983 original size:38 final size:38
Alignment explanation
Indices: 69382932--69383008 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
69382922 CTGAGATAGA
69382932 AAAGTTTATTCTGATTAATTTTTATAATTTATCGAGTG
1 AAAGTTTATTCTGATTAATTTTTATAATTTATCGAGTG
69382970 AAAGTTTATTCTGATTAATTTTTATAATTTATCGAGTG
1 AAAGTTTATTCTGATTAATTTTTATAATTTATCGAGTG
69383008 A
1 A
69383009 TTAGATGCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.49
Consensus pattern (38 bp):
AAAGTTTATTCTGATTAATTTTTATAATTTATCGAGTG
Found at i:69383787 original size:55 final size:54
Alignment explanation
Indices: 69383652--69383789 Score: 150
Period size: 55 Copynumber: 2.5 Consensus size: 54
69383642 GTTTAAGGAT
* * * ** *
69383652 ACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
* ** * * *
69383706 ATCATGTAAGACCATGTTAAGACATGGCATTGATAAACTACTATAAGGCAAAGAT
1 ACCATGTAAGACCATGCCAAGGCATGGCATTGAT-AACTACTACAAGGCAAAGAA
*
69383761 CCCATGTAAGACCATGCCAAGGCATGGCA
1 ACCATGTAAGACCATGCCAAGGCATGGCA
69383790 ATGGTGAGTT
Statistics
Matches: 66, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
54 28 0.42
55 38 0.58
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
Found at i:69383828 original size:53 final size:53
Alignment explanation
Indices: 69383646--69383852 Score: 182
Period size: 53 Copynumber: 3.8 Consensus size: 53
69383636 ATTAGGGTTT
* * * *
69383646 AAGGATACCA-AGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATA-TAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * ** * * * *
69383700 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
69383755 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* **
69383808 AAGGATACCACATAAGACCATTTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTT
69383853 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 31, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
53 44 0.37
54 36 0.30
55 39 0.33
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (53 bp):
AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:69393329 original size:51 final size:49
Alignment explanation
Indices: 69393206--69393351 Score: 193
Period size: 51 Copynumber: 2.9 Consensus size: 49
69393196 TAGCCAAAGC
* *
69393206 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
69393255 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCACAGT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
69393306 TTTCGGGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACC
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
69393352 TCACAATAGA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
49 40 0.48
50 2 0.02
51 41 0.49
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (49 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:69395682 original size:46 final size:46
Alignment explanation
Indices: 69395615--69395706 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
69395605 TAAGCGATGC
*
69395615 TCGTGCTCCATCTTGCAATGAGTATGGAAACAACTTCAAACTCAAT
1 TCGTGCTCCATCTTACAATGAGTATGGAAACAACTTCAAACTCAAT
69395661 TCGTGCTCCATCTTACAATGAGTATGGAAACAACTTCAAACTCAAT
1 TCGTGCTCCATCTTACAATGAGTATGGAAACAACTTCAAACTCAAT
69395707 GTGTCTTCAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (46 bp):
TCGTGCTCCATCTTACAATGAGTATGGAAACAACTTCAAACTCAAT
Found at i:69401957 original size:21 final size:21
Alignment explanation
Indices: 69401923--69401962 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
69401913 TAATATAAAC
*
69401923 AATAATAGTAATAGATAAATG
1 AATAATAATAATAGATAAATG
* *
69401944 AATAATAATGATAGGTAAA
1 AATAATAATAATAGATAAA
69401963 CAAATTCGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.15, T:0.28
Consensus pattern (21 bp):
AATAATAATAATAGATAAATG
Found at i:69403062 original size:40 final size:40
Alignment explanation
Indices: 69403007--69403165 Score: 200
Period size: 40 Copynumber: 4.0 Consensus size: 40
69402997 CCGAATCCAG
* * *
69403007 TTACTAGCACAAAGCCTGCGGGACTTTAGGCCCGGATATA-
1 TTACCAGCACGAAGCCTGCGGGACTTTA-ACCCGGATATAC
* *
69403047 GTACCAGCACTAAGCCTGCGGGA-TTTAACCCGGATATAC
1 TTACCAGCACGAAGCCTGCGGGACTTTAACCCGGATATAC
69403086 TTTACCAGCACGAAGCCTGCGGG-CTTTAACCCGGATATAC
1 -TTACCAGCACGAAGCCTGCGGGACTTTAACCCGGATATAC
* *
69403126 TTTACCAGCACGAAGCCTGCAGTA-TTTAACCCGGATATAC
1 -TTACCAGCACGAAGCCTGCGGGACTTTAACCCGGATATAC
69403166 AATATATCGA
Statistics
Matches: 107, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
38 10 0.09
39 4 0.04
40 93 0.87
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTACCAGCACGAAGCCTGCGGGACTTTAACCCGGATATAC
Found at i:69403132 original size:80 final size:80
Alignment explanation
Indices: 69403007--69403165 Score: 223
Period size: 80 Copynumber: 2.0 Consensus size: 80
69402997 CCGAATCCAG
* * * *
69403007 TTACTAGCACAAAGCCTGCGGGACTTTAGGCCCGGATATAGTACCAGCACTAAGCCTGCGGGATT
1 TTACCAGCACAAAGCCTGCGGGACTTTAGACCCGGATATAGTACCAGCACGAAGCCTGCAGGATT
69403072 TAACCCGGATATACT
66 TAACCCGGATATACT
* * *
69403087 TTACCAGCACGAAGCCTGCGGG-CTTTA-ACCCGGATATACTTTACCAGCACGAAGCCTGCAGTA
1 TTACCAGCACAAAGCCTGCGGGACTTTAGACCCGGATATA--GTACCAGCACGAAGCCTGCAGGA
69403150 TTTAACCCGGATATAC
64 TTTAACCCGGATATAC
69403166 AATATATCGA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
78 10 0.14
79 5 0.07
80 55 0.79
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
TTACCAGCACAAAGCCTGCGGGACTTTAGACCCGGATATAGTACCAGCACGAAGCCTGCAGGATT
TAACCCGGATATACT
Found at i:69405653 original size:13 final size:13
Alignment explanation
Indices: 69405635--69405659 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69405625 TGTGGGTGCA
69405635 CACGGCCATGTCG
1 CACGGCCATGTCG
69405648 CACGGCCATGTC
1 CACGGCCATGTC
69405660 TGGTATTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGGCCATGTCG
Found at i:69408802 original size:3 final size:3
Alignment explanation
Indices: 69408789--69408819 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
69408779 AAAAGTAAAT
69408789 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
69408820 ATTAAATTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:69412039 original size:42 final size:42
Alignment explanation
Indices: 69411987--69412153 Score: 210
Period size: 42 Copynumber: 4.0 Consensus size: 42
69411977 AAGAATATTT
69411987 GAGATAGCTTCGACTATGCATTGGCACTTAGTGTGCAAGATC
1 GAGATAGCTTCGACTATGCATTGGCACTTAGTGTGCAAGATC
* * *
69412029 GGGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCGACTATGCATTGGCACTTAGTGTGCAAGATC
* * ** *
69412071 AAGATAGCTTC-AGCTATGCGTTGGCACTTAGTGTGCGTGATT
1 GAGATAGCTTCGA-CTATGCATTGGCACTTAGTGTGCAAGATC
* * * *
69412113 GAGTTAGCTTCGGCTACGTATTGGCACTTAGTGTGCAAGAT
1 GAGATAGCTTCGACTATGCATTGGCACTTAGTGTGCAAGAT
69412154 TCCGGAGTAA
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
42 106 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (42 bp):
GAGATAGCTTCGACTATGCATTGGCACTTAGTGTGCAAGATC
Found at i:69412136 original size:84 final size:84
Alignment explanation
Indices: 69411988--69412153 Score: 235
Period size: 84 Copynumber: 2.0 Consensus size: 84
69411978 AGAATATTTG
* *
69411988 AGATAGCTTCGACTATGCATTGGCACTTAGTGTGCAAGATCGGGATAGCTTCGGCTATGCATTGG
1 AGATAGCTTCGACTATGCATTGGCACTTAGTGTGCAAGATCGAGATAGCTTCGGCTACGCATTGG
*
69412053 CACTTAGTGTGCGAGATCA
66 CACTTAGTGTGCAAGATCA
* ** * * *
69412072 AGATAGCTTC-AGCTATGCGTTGGCACTTAGTGTGCGTGATTGAGTTAGCTTCGGCTACGTATTG
1 AGATAGCTTCGA-CTATGCATTGGCACTTAGTGTGCAAGATCGAGATAGCTTCGGCTACGCATTG
69412136 GCACTTAGTGTGCAAGAT
65 GCACTTAGTGTGCAAGAT
69412154 TCCGGAGTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
83 1 0.01
84 71 0.99
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (84 bp):
AGATAGCTTCGACTATGCATTGGCACTTAGTGTGCAAGATCGAGATAGCTTCGGCTACGCATTGG
CACTTAGTGTGCAAGATCA
Found at i:69412285 original size:32 final size:32
Alignment explanation
Indices: 69412223--69412285 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
69412213 TATGAGATTG
* * *
69412223 GTACGATATGGTACAGGTATGTATGGAAATTT
1 GTACGAGATGGTACAGGTATGTACGAAAATTT
*
69412255 GTACGAGATGGTATAGGTATGTACGAAAATT
1 GTACGAGATGGTACAGGTATGTACGAAAATT
69412286 CAATTGAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (32 bp):
GTACGAGATGGTACAGGTATGTACGAAAATTT
Found at i:69417406 original size:37 final size:37
Alignment explanation
Indices: 69417353--69417472 Score: 222
Period size: 37 Copynumber: 3.2 Consensus size: 37
69417343 TATAAAAGAA
*
69417353 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
69417390 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
69417427 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
69417464 GTCTCACCC
1 GTCTTACCC
69417473 AGAACATATT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:69417631 original size:49 final size:49
Alignment explanation
Indices: 69417576--69417692 Score: 198
Period size: 49 Copynumber: 2.4 Consensus size: 49
69417566 TTTTACATTA
69417576 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
69417625 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
69417674 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
69417693 CATATATGTA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:69420461 original size:40 final size:41
Alignment explanation
Indices: 69420417--69420515 Score: 105
Period size: 41 Copynumber: 2.4 Consensus size: 41
69420407 TCGATTGTCC
* * **
69420417 TCGGGACATAGCCCGG-TTATAGTTA-TTCGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAAAGCCT
*
69420457 TCGGGA-ATTAGCCTGGATTTAGTAACTTAGCACAAAAGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
*
69420498 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
69420516 ACCATTCGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
39 1 0.02
40 18 0.38
41 29 0.60
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
Found at i:69421339 original size:29 final size:29
Alignment explanation
Indices: 69420999--69421336 Score: 586
Period size: 29 Copynumber: 11.7 Consensus size: 29
69420989 TGTTGAAAAA
* * *
69420999 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
*
69421028 CTCGCACACATAGTGCCTCGATTACCAAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
69421057 CTCGCACACATAGTGCCTCGATTACCGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
69421086 CTCGCACACATAGTGCCTCGATTACCGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
69421115 CTCGCACACATAGTGCCTCGATTACCGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
69421144 CTCGCACACATAGTGCCTCGATTACCGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
69421173 CTCGCACACATAGTGCCTCGATTACCGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
*
69421202 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
*
69421231 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
* *
69421260 CTCGCAAACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
* *
69421289 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACCGAT
69421318 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
69421337 AATCATTCGC
Statistics
Matches: 300, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 300 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACCGAT
Found at i:69421974 original size:49 final size:51
Alignment explanation
Indices: 69421846--69421979 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 51
69421836 CTAAACACCA
* * *
69421846 TTTGTGGACAAGCTACCACTGATTTGCAGATAAATTTCCAGTGATAACACT
1 TTTGTGGACAAGCTACCACTGATTTGCAGATATATTGCCACTGATAACACT
* * * *
69421897 TTTGTAGACAAGCCACCATTGATATGCAGATATATTGCCACTGATAA-A-T
1 TTTGTGGACAAGCTACCACTGATTTGCAGATATATTGCCACTGATAACACT
69421946 TTTGTGGACAAGCTACCACTGATTTGCAGATATA
1 TTTGTGGACAAGCTACCACTGATTTGCAGATATA
69421980 CTGTCACAGC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 31 0.43
50 1 0.01
51 40 0.56
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (51 bp):
TTTGTGGACAAGCTACCACTGATTTGCAGATATATTGCCACTGATAACACT
Found at i:69425446 original size:46 final size:46
Alignment explanation
Indices: 69425309--69425471 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 46
69425299 CCATAAGCTT
* * *
69425309 GGACTCAACTCAATGAGATCGGGTGTTCGCA-TCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGATGTTCG-ATTCCATAAGTGAACTC
* * * * * *****
69425355 AGACTCAACTCAACGAGCTCGGATG-CCTAGTTACATCTCACAACTC
1 GGACTCAACTCAACGAGTTCGGATGTTCGA-TTCCATAAGTGAACTC
*
69425401 GGACTCAACTCAACGAGTTCGGACGTTCGATTCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGATGTTCGATTCCATAAGTGAACTC
*
69425447 GGACTCAACTCAACAAGTTCGGATG
1 GGACTCAACTCAACGAGTTCGGATG
69425472 CCCAAATATC
Statistics
Matches: 89, Mismatches: 25, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 85 0.96
47 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
GGACTCAACTCAACGAGTTCGGATGTTCGATTCCATAAGTGAACTC
Found at i:69428218 original size:30 final size:29
Alignment explanation
Indices: 69428176--69428232 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
69428166 AAAGATAACA
69428176 AGAAAACCGAATAAAGAAATCCAAGATTG
1 AGAAAACCGAATAAAGAAATCCAAGATTG
*
69428205 AGAAACCCAGAATAAAGAAATCCAAGAT
1 AGAAAACC-GAATAAAGAAATCCAAGAT
69428233 ACATACTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.12
Consensus pattern (29 bp):
AGAAAACCGAATAAAGAAATCCAAGATTG
Found at i:69434708 original size:29 final size:28
Alignment explanation
Indices: 69434674--69434776 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
69434664 TACTCAATCA
*
69434674 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
69434703 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
69434732 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
69434761 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
69434777 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:69441307 original size:20 final size:19
Alignment explanation
Indices: 69441261--69441298 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
69441251 ATATTAATAC
69441261 ATTTTTATATAAAATTTAA
1 ATTTTTATATAAAATTTAA
69441280 ATATTTTA-ACTAAAATTTA
1 AT-TTTTATA-TAAAATTTA
69441299 TTATTTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTTTTATATAAAATTTAA
Found at i:69445074 original size:3 final size:3
Alignment explanation
Indices: 69445066--69445098 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
69445056 TATGAGTGGT
*
69445066 TTA TTA TTA TTA TTA TTT TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
69445099 GAAAAACTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:69446251 original size:3 final size:3
Alignment explanation
Indices: 69446239--69446288 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
69446229 CTTAGCAATC
69446239 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
69446286 TAT
1 TAT
69446289 GAGATAAGCT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 44 0.96
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:69457622 original size:2 final size:2
Alignment explanation
Indices: 69457615--69457649 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
69457605 GAGACTAGTC
*
69457615 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69457650 CATGTCATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:69459687 original size:30 final size:30
Alignment explanation
Indices: 69459653--69459713 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
69459643 TCCTTAACTC
69459653 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
69459683 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
69459713 A
1 A
69459714 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:69469098 original size:18 final size:18
Alignment explanation
Indices: 69469077--69469111 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69469067 GAGGCATTAA
69469077 CAAACAAAAACACATTTT
1 CAAACAAAAACACATTTT
**
69469095 CAAACAACCACACATTT
1 CAAACAAAAACACATTT
69469112 ATACAAGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (18 bp):
CAAACAAAAACACATTTT
Found at i:69474130 original size:11 final size:11
Alignment explanation
Indices: 69474114--69474139 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
69474104 ACAAATAATA
69474114 TAAATAAGTTT
1 TAAATAAGTTT
69474125 TAAATAAGTTT
1 TAAATAAGTTT
69474136 TAAA
1 TAAA
69474140 ATACTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (11 bp):
TAAATAAGTTT
Found at i:69474600 original size:20 final size:20
Alignment explanation
Indices: 69474577--69474671 Score: 64
Period size: 20 Copynumber: 4.8 Consensus size: 20
69474567 TAAACTGTCG
*
69474577 GTATTGTGGACAAGCCACCA
1 GTATTGTGGACAAGCTACCA
** * * *
69474597 GTATTGCAGATAAACTGCCA
1 GTATTGTGGACAAGCTACCA
* **
69474617 GTATTGTGGATAAGCTATTA
1 GTATTGTGGACAAGCTACCA
** *
69474637 GTATTGTAAACAAGCTGCCA
1 GTATTGTGGACAAGCTACCA
* *
69474657 GTAATGTGAACAAGC
1 GTATTGTGGACAAGC
69474672 CACCGGCGTT
Statistics
Matches: 55, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (20 bp):
GTATTGTGGACAAGCTACCA
Found at i:69474613 original size:40 final size:40
Alignment explanation
Indices: 69474460--69474675 Score: 191
Period size: 40 Copynumber: 5.4 Consensus size: 40
69474450 ACATACTAGT
* * * * *
69474460 TTGTGGACAAGCCACCAGTGTTGTAGATAAACTACCAAAA
1 TTGTGGACAAGCCACCAGTATTGCAAATAAACTGCCAGAA
* * * * *
69474500 ATGTGGACAAGCCACCAGTGTTGTAAATAAACTACAAGAA
1 TTGTGGACAAGCCACCAGTATTGCAAATAAACTGCCAGAA
* * * * *
69474540 ATGTGGACAATCCACCAGTATTGCAAATAAACTGTCGGTA
1 TTGTGGACAAGCCACCAGTATTGCAAATAAACTGCCAGAA
* *
69474580 TTGTGGACAAGCCACCAGTATTGCAGATAAACTGCCAGTA
1 TTGTGGACAAGCCACCAGTATTGCAAATAAACTGCCAGAA
* * ** * * *
69474620 TTGTGGATAAGCTATTAGTATTGTAAACAAGCTGCCAGTAA
1 TTGTGGACAAGCCACCAGTATTGCAAATAAACTGCCAG-AA
*
69474661 -TGTGAACAAGCCACC
1 TTGTGGACAAGCCACC
69474676 GGCGTTGCAG
Statistics
Matches: 144, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
40 143 0.99
41 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (40 bp):
TTGTGGACAAGCCACCAGTATTGCAAATAAACTGCCAGAA
Found at i:69478603 original size:8 final size:8
Alignment explanation
Indices: 69478602--69478631 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
69478592 ATATAATAAT
69478602 ATAATAT-
1 ATAATATA
69478609 ATAATATA
1 ATAATATA
69478617 ATAATATA
1 ATAATATA
69478625 ATAATAT
1 ATAATAT
69478632 TAAATATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATAATATA
Found at i:69478637 original size:15 final size:15
Alignment explanation
Indices: 69478592--69478638 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
69478582 TATTTATTTT
69478592 ATATAATAATA-T-A
1 ATATAATAATATTAA
*
69478605 ATAT-ATAATATAATA
1 ATATAATAATATTA-A
69478620 ATATAATAATATTAA
1 ATATAATAATATTAA
69478635 ATAT
1 ATAT
69478639 CTTTTACTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 6 0.21
13 4 0.14
15 10 0.36
16 8 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATATAATAATATTAA
Found at i:69478794 original size:33 final size:32
Alignment explanation
Indices: 69478710--69478784 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 32
69478700 ATGATTTCAT
69478710 TATTTATTAA-TAATAATATAATATAATACATAC
1 TATTTATTAAGT--TAATATAATATAATACATAC
*
69478743 TTATTTATTAAGTTAATATAATATAATATATA-
1 -TATTTATTAAGTTAATATAATATAATACATAC
*
69478775 TATTTTTTAA
1 TATTTATTAA
69478785 TTAGAAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
31 9 0.24
33 18 0.47
34 10 0.26
35 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (32 bp):
TATTTATTAAGTTAATATAATATAATACATAC
Found at i:69481337 original size:21 final size:20
Alignment explanation
Indices: 69481290--69481353 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
69481280 CCAATTATTC
*
69481290 CATAAATCAATAATAATTAATA
1 CATAAAT-AAT-ATAATTAAAA
*
69481312 TATAAATAATATAATTAAAAA
1 CATAAATAATATAATT-AAAA
*
69481333 CATAAATAACATAATTCAAAA
1 CATAAATAATATAATT-AAAA
69481354 GAAGAAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 6 0.17
21 24 0.67
22 6 0.17
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (20 bp):
CATAAATAATATAATTAAAA
Found at i:69483889 original size:38 final size:38
Alignment explanation
Indices: 69483840--69483915 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
69483830 CAAGTTAGTG
69483840 GTGGCATGATTTCGTTGAAATTAGTATATAAGTGTATA
1 GTGGCATGATTTCGTTGAAATTAGTATATAAGTGTATA
69483878 GTGGCATGATTTCGTTGAAATTAGTATATAAGTGTATA
1 GTGGCATGATTTCGTTGAAATTAGTATATAAGTGTATA
69483916 TTAGGATCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (38 bp):
GTGGCATGATTTCGTTGAAATTAGTATATAAGTGTATA
Found at i:69484297 original size:33 final size:35
Alignment explanation
Indices: 69484231--69484308 Score: 108
Period size: 33 Copynumber: 2.3 Consensus size: 35
69484221 GACGGCAGCA
* * *
69484231 ATTAGAGTTTTACTTTTATTTATTTTCTTTATTAT
1 ATTAGAGTTTTACGTTTACTTATTTTCTCTATTAT
69484266 A-TAGAGTTTTA-GTTTACTTATTTTCTCTATTAT
1 ATTAGAGTTTTACGTTTACTTATTTTCTCTATTAT
69484299 ATTA-AGTTTT
1 ATTAGAGTTTT
69484309 TATTTCCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
33 26 0.67
34 12 0.31
35 1 0.03
ACGTcount: A:0.24, C:0.06, G:0.08, T:0.62
Consensus pattern (35 bp):
ATTAGAGTTTTACGTTTACTTATTTTCTCTATTAT
Found at i:69493178 original size:12 final size:13
Alignment explanation
Indices: 69493154--69493184 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
69493144 GAAAATGATT
69493154 ATTTTTCATTTTA
1 ATTTTTCATTTTA
69493167 ATTTTTCA-TTTA
1 ATTTTTCATTTTA
69493179 ATTTTT
1 ATTTTT
69493185 AAATTATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
ATTTTTCATTTTA
Found at i:69500425 original size:16 final size:17
Alignment explanation
Indices: 69500394--69500426 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
69500384 TTCATAAGTA
69500394 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
69500411 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
69500427 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:69500772 original size:46 final size:46
Alignment explanation
Indices: 69500707--69501439 Score: 1119
Period size: 46 Copynumber: 16.0 Consensus size: 46
69500697 TTATCTTTGA
* * * * * *
69500707 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* *** *
69500753 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ** ***
69500799 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69500844 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69500890 CTTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69500936 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
69500982 CCTATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAAAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
69501028 CATGTTGCCATGGTATCTTTCAACTATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
69501074 CCTGTTGCCGTGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69501120 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
69501166 CCTGTTGCCGTGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
69501212 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69501258 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69501304 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69501350 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69501396 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
69501440 TTCAGAAAGC
Statistics
Matches: 633, Mismatches: 52, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
45 42 0.07
46 591 0.93
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:69505499 original size:21 final size:24
Alignment explanation
Indices: 69505451--69505499 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 24
69505441 CTAAATAGGA
*
69505451 AACTCATAAGAGTTTTAATCAGGG
1 AACTCATAAGAGTCTTAATCAGGG
*
69505475 AACTCAT-AGAG-CTTAA-CAGGT
1 AACTCATAAGAGTCTTAATCAGGG
69505496 AACT
1 AACT
69505500 TCGAATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.35
22 4 0.17
23 4 0.17
24 7 0.30
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (24 bp):
AACTCATAAGAGTCTTAATCAGGG
Found at i:69518286 original size:184 final size:184
Alignment explanation
Indices: 69517949--69518303 Score: 410
Period size: 184 Copynumber: 1.9 Consensus size: 184
69517939 AAGAATAAAC
* * * *
69517949 TATAACGGTAACAACTAGAGTAACCCGAGGAGGATACGGCAGTCCCAGATTTAAATAATATTTTA
1 TATAACGGTAACAACTAAAGTAACCCAAGGAGGATACGGCAGTCCCAGAATTAAATAATAGTTTA
* * * *
69518014 CTCAAAGTCATGTAGAAAACAAATCCATGTATTTAAAAGGTCCTAATTCTCCCAATCATAATCAG
66 CACAAAGTCATGTAGAAAACAAATCCAAGTATTTAAAAGATCCTAATTCTCCCAATCATAACCAG
* * *
69518079 GTCCAAAATGTATGGAAAAATATATTTCCCCCTAATCATATCAAATAATAAAGT
131 GGCCAAAATCTAAGGAAAAATATATTTCCCCCTAATCATATCAAATAATAAAGT
* * ** * *
69518133 TATAATGGTAACAATTAAAGTATTCCAAGGAGGATAGGGC-GTTCCAGAATTAAATAAT-GTTTA
1 TATAACGGTAACAACTAAAGTAACCCAAGGAGGATACGGCAGTCCCAGAATTAAATAATAGTTTA
* * * * **
69518196 GACAAAGTCACATGTAG-TAACAAATCCAAGTATTTAACAGAATCTTAATTCTCCTTATCATAAC
66 CACAAAGT--CATGTAGAAAACAAATCCAAGTATTTAAAAG-ATCCTAATTCTCCCAATCATAAC
* ** * *
69518260 CAGGGCTAAAATCTAAGGTCAAATATATTTTCTCCTAATCATAT
128 CAGGGCCAAAATCTAAGGAAAAATATATTTCCCCCTAATCATAT
69518304 TGAACATTTG
Statistics
Matches: 140, Mismatches: 28, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
182 10 0.07
183 36 0.26
184 94 0.67
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (184 bp):
TATAACGGTAACAACTAAAGTAACCCAAGGAGGATACGGCAGTCCCAGAATTAAATAATAGTTTA
CACAAAGTCATGTAGAAAACAAATCCAAGTATTTAAAAGATCCTAATTCTCCCAATCATAACCAG
GGCCAAAATCTAAGGAAAAATATATTTCCCCCTAATCATATCAAATAATAAAGT
Found at i:69523431 original size:47 final size:45
Alignment explanation
Indices: 69523377--69523476 Score: 121
Period size: 47 Copynumber: 2.2 Consensus size: 45
69523367 TATCTTAATC
*
69523377 TAAGACACATTAAAAAGCTGTACCTATTATAACAT-ATTAATTAAACT
1 TAAGACACATTAAAAAGCTGTA-CTAAT-TAACATCATTAA-TAAACT
* * *
69523424 TAAGACACATTAAAATGCTTTACTAATTAACATGCATTAATAGACT
1 TAAGACACATTAAAAAGCTGTACTAATTAACAT-CATTAATAAACT
69523470 TAAGACA
1 TAAGACA
69523477 TATTTAAGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
45 6 0.13
46 16 0.34
47 25 0.53
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (45 bp):
TAAGACACATTAAAAAGCTGTACTAATTAACATCATTAATAAACT
Found at i:69525237 original size:10 final size:9
Alignment explanation
Indices: 69525215--69525248 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
69525205 TAGGTTTTTT
69525215 GGTTGTTTAG
1 GGTT-TTTAG
69525225 GGTTTTTAG
1 GGTTTTTAG
*
69525234 GGGTTTTAG
1 GGTTTTTAG
69525243 GGTTTT
1 GGTTTT
69525249 AAATTGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.09, C:0.00, G:0.38, T:0.53
Consensus pattern (9 bp):
GGTTTTTAG
Found at i:69527030 original size:16 final size:16
Alignment explanation
Indices: 69527009--69527039 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69526999 TTCACTATTA
*
69527009 TGTCTTTCGTATTTTC
1 TGTCTTTCATATTTTC
69527025 TGTCTTTCATATTTT
1 TGTCTTTCATATTTT
69527040 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.16, G:0.10, T:0.65
Consensus pattern (16 bp):
TGTCTTTCATATTTTC
Found at i:69529355 original size:30 final size:30
Alignment explanation
Indices: 69529319--69529449 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
69529309 GACAAGATTG
* * * * *
69529319 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
69529349 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
69529377 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69529407 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69529436 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69529450 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:69529410 original size:58 final size:58
Alignment explanation
Indices: 69529319--69529449 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
69529309 GACAAGATTG
* * * * * *
69529319 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
69529377 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
69529436 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69529450 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:69537305 original size:30 final size:30
Alignment explanation
Indices: 69537269--69537399 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
69537259 GACAAGATTG
* * * * *
69537269 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
69537299 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
69537327 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69537357 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69537386 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69537400 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:69537360 original size:58 final size:58
Alignment explanation
Indices: 69537269--69537399 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
69537259 GACAAGATTG
* * * * * *
69537269 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
69537327 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
69537386 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69537400 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:69538951 original size:14 final size:14
Alignment explanation
Indices: 69538932--69538961 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69538922 AAAGGAAAAC
69538932 AAATGAATCTTAAA
1 AAATGAATCTTAAA
*
69538946 AAATGAGTCTTAAA
1 AAATGAATCTTAAA
69538960 AA
1 AA
69538962 CTTAATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.27
Consensus pattern (14 bp):
AAATGAATCTTAAA
Found at i:69541910 original size:48 final size:48
Alignment explanation
Indices: 69541842--69542336 Score: 729
Period size: 48 Copynumber: 10.7 Consensus size: 48
69541832 TGAAAGTGTT
**
69541842 TATATGTCATAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * *
69541890 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* *
69541938 TATATGTGGTAAAG-C-AATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
69541984 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
69542032 TATGTGTGGTAAAGCCGAATGGCTAATGTG-AAT--A--TGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
69542075 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
69542123 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
69542171 --TATGTGGTAAAGCCGAATGGCTAATGTGAAATACA--TGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * *
69542215 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT--ATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* *
69542261 TATATGT-GTAAA-CCGAATGGCGAATGTG-AAT--ATGATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATG-TGTGATATG
*
69542305 AATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
69542337 TGTTGTAACA
Statistics
Matches: 415, Mismatches: 17, Indels: 31
0.90 0.04 0.07
Matches are distributed among these distances:
43 43 0.10
44 42 0.10
45 11 0.03
46 142 0.34
47 6 0.01
48 171 0.41
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:69541965 original size:94 final size:95
Alignment explanation
Indices: 69541842--69542336 Score: 705
Period size: 94 Copynumber: 5.3 Consensus size: 95
69541832 TGAAAGTGTT
** * *
69541842 TATATGTCATAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATGTGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-ATATGTGATATGTATATGTGGTAAAGCCG
69541907 AATGGCTAATGTGAAATATATATGTGATATG
65 AATGGCTAATGTGAAATATATATGTGATATG
69541938 TATATGTGGTAAAG-C-AATGGCTAATGTGAAATATATATGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-ATATGTGATATGTATATGTGGTAAAGCCG
* *
69542001 AATGGCTAATGTGAAATACATGTGTGATATG
65 AATGGCTAATGTGAAATATATATGTGATATG
*
69542032 TATGTGTGGTAAAGCCGAATGGCTAATGTG----AATATGTGATATGTATATGTGGTAAAGCCGA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAATATGTGATATGTATATGTGGTAAAGCCGA
* *
69542093 ATGGCTAATGTGAAATACATGTGTGATATG
66 ATGGCTAATGTGAAATATATATGTGATATG
*
69542123 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG--TATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-ATATGTGATATGTATATGTGGTAAAGCCG
*
69542186 AATGGCTAATGTG-AA-ATACATGTGATATG
65 AATGGCTAATGTGAAATATATATGTGATATG
* *
69542215 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATATGAGATGTGTATATGT-GTAAA-CCGA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAATATGTGATATGTATATGTGGTAAAGCCGA
* * *
69542277 ATGGCGAATGTG-AATAT-GATGAGATATG
66 ATGGCTAATGTGAAATATATATGTGATATG
*
69542305 AATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
69542337 TGTTGTAACA
Statistics
Matches: 369, Mismatches: 20, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
90 66 0.18
91 96 0.26
92 51 0.14
93 2 0.01
94 115 0.31
95 3 0.01
96 36 0.10
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (95 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAATATGTGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATATATGTGATATG
Found at i:69542431 original size:37 final size:37
Alignment explanation
Indices: 69542381--69542465 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
69542371 GGAAATATAT
*
69542381 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
69542418 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
69542455 TCC-GGTAAGAC
1 TCCGGGTAAGAC
69542466 TTGTAATAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 8 0.17
37 38 0.83
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:69544450 original size:40 final size:40
Alignment explanation
Indices: 69544354--69544600 Score: 385
Period size: 40 Copynumber: 6.3 Consensus size: 40
69544344 CCAGGCTAAA
69544354 TCCGAA-AGCATTCGTGCTAGTGATGTATCCGGACTAAGT
1 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
69544393 T-CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
1 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
*
69544432 TCTGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
1 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
*
69544472 TCCGAAGAGCATTCGTGCTAGGGATGTATCCGGACTAAGT
1 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
* * *
69544512 TCCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAG-
1 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
* * *
69544551 TCCGAA-AGTATTCGTGCTAGTGATGTATCCGGGCTAGGT
1 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
*
69544590 CCCGAAGAGCA
1 TCCGAAGAGCA
69544601 ATCATGCTGG
Statistics
Matches: 189, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 30 0.16
39 46 0.24
40 113 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
Found at i:69548500 original size:48 final size:48
Alignment explanation
Indices: 69548432--69548894 Score: 748
Period size: 48 Copynumber: 9.7 Consensus size: 48
69548422 TGAAAGTGTT
** * *
69548432 TATATGTCATAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
69548480 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
69548528 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
69548576 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
69548624 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
69548672 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
69548720 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACAT-TGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
69548767 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* * * *
69548815 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
69548863 AATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
69548895 TGTTGTAACA
Statistics
Matches: 388, Mismatches: 26, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
47 46 0.12
48 342 0.88
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
Found at i:69548989 original size:37 final size:37
Alignment explanation
Indices: 69548939--69549024 Score: 154
Period size: 37 Copynumber: 2.3 Consensus size: 37
69548929 GGAAATATAT
*
69548939 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
69548976 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
69549013 TCCGGGTAAGAC
1 TCCGGGTAAGAC
69549025 TTCGTAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.22, C:0.20, G:0.35, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:69553726 original size:40 final size:40
Alignment explanation
Indices: 69553585--69553831 Score: 334
Period size: 40 Copynumber: 6.0 Consensus size: 40
69553575 GATGATAACT
*
69553585 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGATAATC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--CC
* * *
69553628 GGTCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATGATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--CC
69553671 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
69553711 GGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
69553751 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
69553791 GGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
69553831 G
1 G
69553832 ACTAAATTCC
Statistics
Matches: 188, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 112 0.60
42 2 0.01
43 72 0.38
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:69572749 original size:42 final size:43
Alignment explanation
Indices: 69572680--69572775 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 43
69572670 GCTCGGATGT
* * *
69572680 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCTTAGA-AA
1 GGTCTTACACGAAATCAAATATCGATGCCGA-TGTCCTAGACAA
* *
69572722 GGTTCTTACACGAAATCATATAT-GATGCCGATGTCCTAGACAT
1 GG-TCTTACACGAAATCAAATATCGATGCCGATGTCCTAGACAA
69572765 GGTCTTACACG
1 GGTCTTACACG
69572776 TTTATCTCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
42 25 0.54
43 21 0.46
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCGATGTCCTAGACAA
Found at i:69573368 original size:15 final size:15
Alignment explanation
Indices: 69573348--69573378 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
69573338 AATTTCTCAT
69573348 TTAACCCAACACATA
1 TTAACCCAACACATA
69573363 TTAACCCAACACATA
1 TTAACCCAACACATA
69573378 T
1 T
69573379 CTTTCATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (15 bp):
TTAACCCAACACATA
Found at i:69576043 original size:40 final size:40
Alignment explanation
Indices: 69575998--69576127 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
69575988 CGGAATACAA
69575998 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
69576038 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
69576078 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
69576118 CCGGATATAA
1 CCGGATATAA
69576128 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:69583676 original size:22 final size:21
Alignment explanation
Indices: 69583644--69583686 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
69583634 GTTGTTACAC
*
69583644 AACATATAGCATACATTTCTCA
1 AACATAAAGCATACA-TTCTCA
*
69583666 AACATAAAGCATCCATTCTCA
1 AACATAAAGCATACATTCTCA
69583687 TAAATCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.28
Consensus pattern (21 bp):
AACATAAAGCATACATTCTCA
Found at i:69591569 original size:16 final size:17
Alignment explanation
Indices: 69591550--69591583 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
69591540 AAATTTTATG
69591550 AAATAAAAAT-AAACAA
1 AAATAAAAATCAAACAA
69591566 AAATAAAAATCAAACAA
1 AAATAAAAATCAAACAA
69591583 A
1 A
69591584 CGCCATCCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATAAAAATCAAACAA
Found at i:69595386 original size:23 final size:23
Alignment explanation
Indices: 69595356--69595405 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
69595346 GCTGGCTGAA
69595356 TCTTCAAACCATTTTCATCGCTT
1 TCTTCAAACCATTTTCATCGCTT
*
69595379 TCTTCAAACCATTTTCATGGCTT
1 TCTTCAAACCATTTTCATCGCTT
69595402 TCTT
1 TCTT
69595406 TGCCCTAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.28, G:0.06, T:0.46
Consensus pattern (23 bp):
TCTTCAAACCATTTTCATCGCTT
Found at i:69598038 original size:26 final size:27
Alignment explanation
Indices: 69597988--69598044 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
69597978 AACACCTTTA
* *
69597988 TAGGTGGAAAATTTACAGATTTACCCC
1 TAGGAGGAAAATTTACAGATATACCCC
*
69598015 TAGGAGGAAAA-TTACTGATATACCCC
1 TAGGAGGAAAATTTACAGATATACCCC
69598041 TAGG
1 TAGG
69598045 GTTAAGGTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
TAGGAGGAAAATTTACAGATATACCCC
Found at i:69606646 original size:29 final size:29
Alignment explanation
Indices: 69606613--69606744 Score: 219
Period size: 29 Copynumber: 4.6 Consensus size: 29
69606603 CCTTCGAGCT
** * *
69606613 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
69606642 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69606671 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69606700 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69606729 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69606745 ATCTCGTCAC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:69606647 original size:58 final size:58
Alignment explanation
Indices: 69606584--69606744 Score: 187
Period size: 58 Copynumber: 2.8 Consensus size: 58
69606574 AATTTAAGCC
* * * * * *
69606584 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * **
69606642 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
69606700 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCA
69606745 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 91 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:69606675 original size:87 final size:87
Alignment explanation
Indices: 69606584--69606744 Score: 223
Period size: 87 Copynumber: 1.9 Consensus size: 87
69606574 AATTTAAGCC
* * * * * *
69606584 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCATGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
69606649 TTAGTGCCATATATTTCCAGCA
66 TTAGTGCCATATATTTCCAGCA
* * * **
69606671 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
69606736 TTAGTGCCA
66 TTAGTGCCA
69606745 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 63 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (87 bp):
CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:69614685 original size:29 final size:29
Alignment explanation
Indices: 69614652--69614754 Score: 161
Period size: 29 Copynumber: 3.6 Consensus size: 29
69614642 CCTTCGAGCT
** * *
69614652 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
69614681 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69614710 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69614739 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69614755 ATCTCGTCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:69614686 original size:58 final size:58
Alignment explanation
Indices: 69614623--69614754 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
69614613 AATTTAAGCC
* * * * * *
69614623 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * **
69614681 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
69614739 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69614755 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:69617156 original size:27 final size:26
Alignment explanation
Indices: 69617121--69617177 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
69617111 AACACCTTTA
* *
69617121 TAGGTGGAAAATTTACAAATTTACCCC
1 TAGGAGGAAAA-TTACAAATATACCCC
**
69617148 TAGGAGGAAAATTACTGATATACCCC
1 TAGGAGGAAAATTACAAATATACCCC
69617174 TAGG
1 TAGG
69617178 GTTAAGGTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGAGGAAAATTACAAATATACCCC
Found at i:69620796 original size:33 final size:33
Alignment explanation
Indices: 69620754--69620817 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
69620744 CATTTCAGTA
* *
69620754 ATAGTTCAAT-TTAGTTAGGGCCCTAGCCCATT
1 ATAGTTCAATATCAGTGAGGGCCCTAGCCCATT
*
69620786 ATAGTATCAATATCAGTGAGGGCCTTAGCCCA
1 ATAGT-TCAATATCAGTGAGGGCCCTAGCCCA
69620818 ATTCAGTAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 5 0.19
33 5 0.19
34 17 0.63
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (33 bp):
ATAGTTCAATATCAGTGAGGGCCCTAGCCCATT
Found at i:69621128 original size:27 final size:26
Alignment explanation
Indices: 69621098--69621149 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
69621088 ACAATCATAC
*
69621098 ATCTCAAAAGGGCATAATAGTCATTTT
1 ATCTC-AAAGGGCATAATAGACATTTT
*
69621125 ATCTCATAGGGCATAATAGACATTT
1 ATCTCAAAGGGCATAATAGACATTT
69621150 ATAAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (26 bp):
ATCTCAAAGGGCATAATAGACATTTT
Found at i:69622618 original size:50 final size:50
Alignment explanation
Indices: 69622562--69622664 Score: 170
Period size: 50 Copynumber: 2.1 Consensus size: 50
69622552 AATTCCACAC
* * * *
69622562 AACTTCTTCTATCTAATTTTTTCTCCACAAAACACTCCCCAAATCTCCCT
1 AACTTCTTCTATCCAAATTTTCCTCCACAAAACACTCCCCAAATCCCCCT
69622612 AACTTCTTCTATCCAAATTTTCCTCCACAAAACACTCCCCAAATCCCCCT
1 AACTTCTTCTATCCAAATTTTCCTCCACAAAACACTCCCCAAATCCCCCT
69622662 AAC
1 AAC
69622665 AACCGAAATT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.30, C:0.39, G:0.00, T:0.31
Consensus pattern (50 bp):
AACTTCTTCTATCCAAATTTTCCTCCACAAAACACTCCCCAAATCCCCCT
Found at i:69625705 original size:2 final size:2
Alignment explanation
Indices: 69625698--69625731 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
69625688 TTCAGCCTAT
* *
69625698 TA TA TA TA TA TA TA TA GA TA TA TA GA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
69625732 CTAGTTATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (2 bp):
TA
Found at i:69633623 original size:2 final size:2
Alignment explanation
Indices: 69633616--69633642 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
69633606 ATGAATTGTG
69633616 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
69633643 AGTTAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69638036 original size:38 final size:38
Alignment explanation
Indices: 69637993--69638145 Score: 252
Period size: 38 Copynumber: 4.0 Consensus size: 38
69637983 AACATATGAT
* * *
69637993 GTATTATATTCGGGTTAAATCCCGCAGGCTTAGTACTG
1 GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTG
69638031 GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTG
1 GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTG
69638069 GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTG
1 GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTG
*
69638107 GTATTATATCCGGGTTTAAAGTCCCGCAGGCTTTATGCT
1 GTATTATATCCGGG-TTAAA-TCCCGCAGGCTTAATGCT
69638146 AGTGACTGGA
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
38 87 0.80
39 5 0.05
40 17 0.16
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (38 bp):
GTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTG
Found at i:69642507 original size:17 final size:18
Alignment explanation
Indices: 69642465--69642513 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69642455 AGTTGAAAAG
69642465 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69642484 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69642501 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69642514 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69643398 original size:40 final size:40
Alignment explanation
Indices: 69643332--69643498 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
69643322 AAATTGAATG
* * *
69643332 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
69643371 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69643411 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69643451 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69643491 ATATCCGG
1 ATATCCGG
69643499 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69650492 original size:17 final size:18
Alignment explanation
Indices: 69650450--69650498 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69650440 AGTTGAAAAG
69650450 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69650469 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69650486 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69650499 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69651382 original size:40 final size:40
Alignment explanation
Indices: 69651316--69651482 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
69651306 AAATTGAATG
* * *
69651316 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
69651355 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69651395 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69651435 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69651475 ATATCCGG
1 ATATCCGG
69651483 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69660304 original size:63 final size:63
Alignment explanation
Indices: 69660203--69660327 Score: 214
Period size: 63 Copynumber: 2.0 Consensus size: 63
69660193 AACAAACCCT
* *
69660203 AAACCAAAATCATACTCGTGTTTTCGAATAATAAGATTCTTGACGTTTTCCATCTTTCAACCA
1 AAACCAAAATCATACTCGTGTTTTCGAATAATAAGATTCTTGACATTTTCCAGCTTTCAACCA
* *
69660266 AAACCAAAATCATACTTGTGTTTTCGAATAATATGATTCTTGACATTTTCCAGCTTTCAACC
1 AAACCAAAATCATACTCGTGTTTTCGAATAATAAGATTCTTGACATTTTCCAGCTTTCAACC
69660328 TGTAACGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.36
Consensus pattern (63 bp):
AAACCAAAATCATACTCGTGTTTTCGAATAATAAGATTCTTGACATTTTCCAGCTTTCAACCA
Found at i:69661409 original size:19 final size:20
Alignment explanation
Indices: 69661385--69661422 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69661375 GGTACCACCA
69661385 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
69661404 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
69661423 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:69662228 original size:30 final size:29
Alignment explanation
Indices: 69662194--69662252 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
69662184 ATTTAATACG
69662194 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTT-AAAAAATTACACTTTTGCCCCTA
** *
69662224 AACTTTTGATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAATTACACTTTTGCCCCTA
69662253 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (29 bp):
AACTTTAAAAAATTACACTTTTGCCCCTA
Found at i:69667306 original size:40 final size:40
Alignment explanation
Indices: 69667261--69667428 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
69667251 CGGAATATAA
69667261 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
69667301 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69667341 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
69667381 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
69667421 CCGGATAT
1 CCGGATAT
69667429 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69667411 original size:80 final size:80
Alignment explanation
Indices: 69667277--69667426 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
69667267 ATAACCACGT
* *
69667277 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
69667342 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
69667357 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
69667420 CCCGGAT
64 CCCGGAT
69667427 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:69675385 original size:40 final size:39
Alignment explanation
Indices: 69675274--69675424 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
69675264 TATAACATGT
* ** *
69675274 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
69675314 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
69675354 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
69675394 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
69675425 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:69675408 original size:80 final size:79
Alignment explanation
Indices: 69675274--69675424 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
69675264 TATAACATGT
*
69675274 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
69675339 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
69675354 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
69675417 CCGGATAT
64 CCGGATAT
69675425 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:69679348 original size:40 final size:40
Alignment explanation
Indices: 69679269--69679426 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
69679259 TTCGAATGAT
* * * *
69679269 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
69679309 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
69679349 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
69679389 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
69679427 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:69679447 original size:80 final size:80
Alignment explanation
Indices: 69679269--69679456 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
69679259 TTCGAATGAT
* *
69679269 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
69679334 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
69679349 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
69679410 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
69679430 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
69679457 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:69681733 original size:24 final size:24
Alignment explanation
Indices: 69681706--69681753 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
69681696 TATTGAGTTT
69681706 GTAAATCCGAAAGAAATTGTTAGA
1 GTAAATCCGAAAGAAATTGTTAGA
*
69681730 GTAAATCTGAAAGAAATTGTTAGA
1 GTAAATCCGAAAGAAATTGTTAGA
69681754 ATTATTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.27
Consensus pattern (24 bp):
GTAAATCCGAAAGAAATTGTTAGA
Found at i:69689883 original size:36 final size:35
Alignment explanation
Indices: 69689835--69689940 Score: 122
Period size: 35 Copynumber: 3.0 Consensus size: 35
69689825 TATGATATTC
* * ** * *
69689835 TGATTCATATGTTAAACATGTTATTATTATTGATTT
1 TGATTCACATGTTAAGCATGCCATTA-TACTAATTT
69689871 TGATTCACATGTTAAGCATGCCATTATACTAATTT
1 TGATTCACATGTTAAGCATGCCATTATACTAATTT
* * *
69689906 TGATTCGCATGTTAAGCATGCCACTATACTGATTT
1 TGATTCACATGTTAAGCATGCCATTATACTAATTT
69689941 CGAATTGCAT
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
35 39 0.64
36 22 0.36
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.43
Consensus pattern (35 bp):
TGATTCACATGTTAAGCATGCCATTATACTAATTT
Found at i:69689917 original size:35 final size:35
Alignment explanation
Indices: 69689867--69689959 Score: 125
Period size: 35 Copynumber: 2.7 Consensus size: 35
69689857 ATTATTATTG
* *
69689867 ATTTTGATTCACATGTTAAGCATGCCATTATACTA
1 ATTTTGATTCGCATGTTAAGCATGCCACTATACTA
*
69689902 ATTTTGATTCGCATGTTAAGCATGCCACTATACTG
1 ATTTTGATTCGCATGTTAAGCATGCCACTATACTA
* *
69689937 ATTTCGAATT-GCATGTAAAGCAT
1 ATTTTG-ATTCGCATGTTAAGCAT
69689960 ACCTATTCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
35 49 0.94
36 3 0.06
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (35 bp):
ATTTTGATTCGCATGTTAAGCATGCCACTATACTA
Found at i:69696277 original size:47 final size:47
Alignment explanation
Indices: 69696213--69696794 Score: 930
Period size: 47 Copynumber: 12.4 Consensus size: 47
69696203 GATGTACAAG
* * ** *
69696213 GTGTGTATATGTTATAAGGCTTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
69696260 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
69696307 GTGTATATATGTGATAAGGCTGAATGGCCAATGCGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
69696354 GTGTATATATGTGATAAGGCTGAGTGACCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
69696401 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * **
69696448 GTGTATATATGTGATAAGGCTGAGTGGCTAACATGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
69696495 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
69696542 GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
69696589 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
69696636 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
69696683 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
69696730 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
69696777 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
69696795 TCCCGAAGGG
Statistics
Matches: 500, Mismatches: 35, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 500 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:69699272 original size:40 final size:40
Alignment explanation
Indices: 69698455--69699263 Score: 1386
Period size: 40 Copynumber: 20.2 Consensus size: 40
69698445 AGTTATATAG
* * *
69698455 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTAT
69698495 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
69698535 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
** *
69698575 CCGGGCTAAGTTTTGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
69698615 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
69698655 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
69698695 CCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
69698735 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
69698775 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
69698815 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
69698855 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
69698895 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGGGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
69698935 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
69698975 CCGGGCTACGTTCCGAAGAGCATTCGTGCTAGCGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
69699015 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
69699055 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
69699095 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
69699135 CTGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
69699175 CCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
69699215 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
69699255 CCAGGCTAA
1 CCGGGCTAA
69699264 ACCTCGAAGG
Statistics
Matches: 733, Mismatches: 35, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
40 732 1.00
41 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:69699376 original size:29 final size:28
Alignment explanation
Indices: 69699295--69699394 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
69699285 GAGTTATGAG
* * * *
69699295 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
**
69699323 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATTGA
*
69699351 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
* *
69699380 ACGCTATGTGTGCGA
1 GCACTATGTGTGCGA
69699395 AATCAGTCAG
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
28 34 0.59
29 24 0.41
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:69702909 original size:47 final size:47
Alignment explanation
Indices: 69702852--69703433 Score: 948
Period size: 47 Copynumber: 12.4 Consensus size: 47
69702842 GATGTACAAG
* * *
69702852 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
69702899 GTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
69702946 GTGTATATATGTGATAAGGCCGAATGACCAATGCGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
69702993 GTGTATATATGTGATAAGGCCGAGTGACCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
69703040 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
69703087 GTGTATATATGTGATAAGGCCGAGTGGCTAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
69703134 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
69703181 GTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
69703228 ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
69703275 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
69703322 GTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
69703369 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
69703416 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
69703434 TCCCGAAGGG
Statistics
Matches: 500, Mismatches: 35, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 500 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:69706437 original size:30 final size:30
Alignment explanation
Indices: 69706403--69706485 Score: 123
Period size: 30 Copynumber: 2.8 Consensus size: 30
69706393 TTTTTATCGT
* *
69706403 AGAACAGCCACAAAGGCTTCCACA-TATCAG
1 AGAACAACCACAAAGGCTTCCACATTA-CAA
69706433 AGAACAACCACAAAGGCTTCCACATTACAA
1 AGAACAACCACAAAGGCTTCCACATTACAA
*
69706463 AGAACATCCACAAAGGCTTCCAC
1 AGAACAACCACAAAGGCTTCCAC
69706486 TTTTTAGTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 47 0.96
31 2 0.04
ACGTcount: A:0.42, C:0.31, G:0.13, T:0.13
Consensus pattern (30 bp):
AGAACAACCACAAAGGCTTCCACATTACAA
Found at i:69708182 original size:48 final size:48
Alignment explanation
Indices: 69708071--69708278 Score: 154
Period size: 48 Copynumber: 4.4 Consensus size: 48
69708061 TGATATGTGT
* * *
69708071 GCCACTGTAAGACCATGTATGGGACATGGCGTCAGCCACGATATGACA
1 GCCAGTGTAAGACCATGTATGGAACATGGCATCAGCCACGATATGACA
* ** * * * *
69708119 G-CAGTGTAAGACCATGTTTGGAACATGGCATCAGTGATGTTGTGAGA
1 GCCAGTGTAAGACCATGTATGGAACATGGCATCAGCCACGATATGACA
* * * * *
69708166 GCCAGTGTAAGACCATGTCTAGG-ACATGGTATC-GGCATTGATATGTGC-
1 GCCAGTGTAAGACCATGTAT-GGAACATGGCATCAGCCA-CGATATG-ACA
* * * * * * **
69708214 GCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCCACAACATGGGA
1 GCCAGTGTAAGACCATGTATGGAACATGGCATCAGCCACGATATGACA
69708262 GCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATG
69708279 ACTAGGATAT
Statistics
Matches: 125, Mismatches: 28, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
47 42 0.34
48 78 0.62
49 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTATGGAACATGGCATCAGCCACGATATGACA
Found at i:69708264 original size:96 final size:96
Alignment explanation
Indices: 69708164--69708394 Score: 275
Period size: 96 Copynumber: 2.4 Consensus size: 96
69708154 GATGTTGTGA
* * * * * *
69708164 GAGCCAGTGTAAGACCATGTCTAGGACATGGTATCGGCATTGATATGTGCGCTAGTGTAAAACCA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGAGTAAAACCA
*
69708229 TGTCTGGGACATGGCATCAGCCACAACATGG
66 TGTCCGGGACATGGCATCAGCCACAACATGG
* * * * *
69708260 GAGCCAGTGTAAGACCATGACTAGGATATGGCATCGGTATTGGGACGAGAGCTAGAGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGAGTAAAACCA
* * *
69708325 TGTCCGGGACATGGCATCGGCCTCAACATGT
66 TGTCCGGGACATGGCATCAGCCACAACATGG
* * * *
69708356 AAGCCAATGTAAGACCATGT-TTGGAACATGGCATTGGCA
1 GAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCA
69708395 ATTCACCCTC
Statistics
Matches: 112, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
95 3 0.03
96 109 0.97
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGAGTAAAACCA
TGTCCGGGACATGGCATCAGCCACAACATGG
Found at i:69708291 original size:48 final size:48
Alignment explanation
Indices: 69708164--69708389 Score: 152
Period size: 48 Copynumber: 4.7 Consensus size: 48
69708154 GATGTTGTGA
* * ** * *
69708164 GAGCCAGTGTAAGACCATGTCTAGGACATGGTATCGGCATTGATATGT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGCCATCAACATGG
* * * *
69708212 GCGCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCCA-CAACATGG
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GCCATCAACATGG
* * ** **** * *
69708260 GAGCCAGTGTAAGACCATGACTAGGATATGGCATCGGTATTGGGACGA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGCCATCAACATGG
* * ** *
69708308 GAGCTAGAGTAAGACCATGTCCGGGACATGGCATCGGCC-TCAACATGT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GCCATCAACATGG
* * *
69708356 AAGCCAATGTAAGACCATGT-TTGGAACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTAGG-ACATGGCAT
69708390 TGGCAATTCA
Statistics
Matches: 130, Mismatches: 44, Indels: 8
0.71 0.24 0.04
Matches are distributed among these distances:
47 4 0.03
48 122 0.94
49 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGCCATCAACATGG
Found at i:69708326 original size:144 final size:143
Alignment explanation
Indices: 69708061--69708345 Score: 324
Period size: 144 Copynumber: 2.0 Consensus size: 143
69708051 GACATTTGGG
* * * * *
69708061 TGATATGTGTGCCACTGTAAGACCATGTATGGGACATGGCGTCAGCCACGATATGACAGCAGTGT
1 TGATATGTGCGCCACTGTAAAACCATGTATGGGACATGGCATCAGCCACAACATGACAGCAGTGT
* * * * * *
69708126 AAGACCATGTTTGGAACATGGCATCAGTGATGTTGTGAGAGCCAGTGTAAGACCATGTCTAGGAC
66 AAGACCATGCTAGGAACATGGCATCAGTGATGTGGCGAGAGCCAGAGTAAGACCATGTCCAGGAC
*
69708191 ATGGTATCGGCAT
131 ATGGCATCGGCAT
* * * **
69708204 TGATATGTGCGCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCCACAACATGGGAGCCAGTG
1 TGATATGTGCGCCACTGTAAAACCATGTATGGGACATGGCATCAGCCACAACATGACAG-CAGTG
* * * *
69708269 TAAGACCATGACTAGG-ATATGGCATCGGT-AT-TGGGACGAGAGCTAGAGTAAGACCATGTCCG
65 TAAGACCATG-CTAGGAACATGGCATCAGTGATGT-GG-CGAGAGCCAGAGTAAGACCATGTCCA
69708331 GGACATGGCATCGGC
127 GGACATGGCATCGGC
69708346 CTCAACATGT
Statistics
Matches: 117, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
142 1 0.01
143 52 0.44
144 61 0.52
145 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (143 bp):
TGATATGTGCGCCACTGTAAAACCATGTATGGGACATGGCATCAGCCACAACATGACAGCAGTGT
AAGACCATGCTAGGAACATGGCATCAGTGATGTGGCGAGAGCCAGAGTAAGACCATGTCCAGGAC
ATGGCATCGGCAT
Found at i:69711206 original size:55 final size:54
Alignment explanation
Indices: 69711051--69711246 Score: 162
Period size: 53 Copynumber: 3.6 Consensus size: 54
69711041 TTCCTTTTTA
* * * * * * * * *
69711051 AACTTGCCATTGCCTTGTCTTGACATGGTCTTACGTG-GTATCTTTACCTTATA-
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAG-ATCCTTGCCTCATAG
* * * *
69711104 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATTAGATCTTTGCCTCATAG
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCCTTGCCTCATAG
** * * * ** **
69711158 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCCTTGCCTCATAG
69711213 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC
69711247 TTGGTATCCT
Statistics
Matches: 113, Mismatches: 27, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 42 0.37
54 30 0.27
55 41 0.36
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCCTTGCCTCATAG
Found at i:69713841 original size:24 final size:24
Alignment explanation
Indices: 69713673--69713840 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
69713663 GCTTTATCAT
*
69713673 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69713698 ATAACTGGGGCAAAAGCCTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69713722 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69713746 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
69713770 GTAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
69713794 GTAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
69713818 ATAACTGAGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69713841 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
24 121 0.91
25 12 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69713915 original size:20 final size:20
Alignment explanation
Indices: 69713890--69713956 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
69713880 TTATGAATAC
69713890 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
69713910 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
*
69713930 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
69713950 ACCATGT
1 ATCATGT
69713957 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:69713921 original size:11 final size:11
Alignment explanation
Indices: 69713890--69713945 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
69713880 TTATGAATAC
69713890 ATCATGTGCAT
1 ATCATGTGCAT
*
69713901 ATCA--TACAT
1 ATCATGTGCAT
69713910 ATCATGTGCAT
1 ATCATGTGCAT
69713921 ATCA--TGCAT
1 ATCATGTGCAT
*
69713930 GTCATGTGCAT
1 ATCATGTGCAT
69713941 ATCAT
1 ATCAT
69713946 ACATACCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:69722495 original size:47 final size:47
Alignment explanation
Indices: 69722423--69722649 Score: 296
Period size: 47 Copynumber: 4.7 Consensus size: 47
69722413 CCCTTCGGGA
* * * * * * *
69722423 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
69722471 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
*
69722517 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69722566 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69722613 CTTATCACATATATACACACCTTCACATTCATCACAT
1 CTTATCACATATAT--ACACTTTCACATTCATCACAT
69722650 AAAATCCTAA
Statistics
Matches: 162, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
46 2 0.01
47 95 0.59
48 2 0.01
49 63 0.39
ACGTcount: A:0.30, C:0.32, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69722585 original size:96 final size:96
Alignment explanation
Indices: 69722423--69722649 Score: 329
Period size: 96 Copynumber: 2.4 Consensus size: 96
69722413 CCCTTCGGGA
* * * *
69722423 CTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTGGCCACTCGGTCCTATCACATATATA
1 CTTATCACATATATATACACCTT-CACATTCATCACATCGGCCACTAGGTCCTATCACATATATA
*
69722485 CACTTTCACATTCATCACATTGGCCATTCA-GC
65 CACTTTCACATTCATCACATCGGCCATT-AGGC
*
69722517 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGG-CCTTATCACATATATA
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCACTAGGTCC-TATCACATATATA
69722581 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
69722613 CTTATCACATATATACACACCTTCACATTCATCACAT
1 CTTATCACATATATATACACCTTCACATTCATCACAT
69722650 AAAATCCTAA
Statistics
Matches: 121, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
94 10 0.08
95 4 0.03
96 104 0.86
97 3 0.02
ACGTcount: A:0.30, C:0.32, G:0.07, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACCTTCACATTCATCACATCGGCCACTAGGTCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69732327 original size:12 final size:12
Alignment explanation
Indices: 69732310--69732334 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69732300 CACGCTCCTA
69732310 TGTGCTAGGCCG
1 TGTGCTAGGCCG
69732322 TGTGCTAGGCCG
1 TGTGCTAGGCCG
69732334 T
1 T
69732335 CCCAAACTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.40, T:0.28
Consensus pattern (12 bp):
TGTGCTAGGCCG
Found at i:69746029 original size:22 final size:22
Alignment explanation
Indices: 69746001--69746047 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
69745991 ATTGCTTCCT
69746001 CTTAGCTTGCAAATCTTTGTCA
1 CTTAGCTTGCAAATCTTTGTCA
69746023 CTTAGCTTGCAAATCTTTGTCA
1 CTTAGCTTGCAAATCTTTGTCA
69746045 CTT
1 CTT
69746048 TTTTGAGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (22 bp):
CTTAGCTTGCAAATCTTTGTCA
Found at i:69757137 original size:5 final size:5
Alignment explanation
Indices: 69757127--69757151 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
69757117 CACATGAAAA
69757127 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
69757152 GGTTGGTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:69768432 original size:46 final size:45
Alignment explanation
Indices: 69768381--69768547 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 45
69768371 GACGAGGGCT
69768381 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* * *
69768427 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGAGCC
* * * * * *
69768473 AGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCC
* *
69768517 AGTGTAAGACATGTATGGGACATGCGTCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
69768548 ACGGTTACAT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.02
44 32 0.30
46 70 0.66
47 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:69768477 original size:92 final size:90
Alignment explanation
Indices: 69768330--69768541 Score: 246
Period size: 92 Copynumber: 2.3 Consensus size: 90
69768320 AGATTTGTGT
* * * *
69768330 GCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTATGGGACAT-GCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGT
69768395 CTGGGACATGCATCAGCCAC-AGTATGAGA
64 CTGGGACATGCATCAGCCACGAG-AT--GA
* * * * *
69768424 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTCAGACATGTCT
1 GCCAGTGTAAGACATGTATGGGACATGCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
* * * *
69768489 GGGACATGCGTCGGCTACGAGATGT
66 GGGACATGCATCAGCCACGAGATGA
*
69768514 GCTAGTGTAAGACATGTATGGGACATGC
1 GCCAGTGTAAGACATGTATGGGACATGC
69768542 GTCAGCACGG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
90 27 0.26
92 49 0.48
93 14 0.14
94 12 0.12
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.22
Consensus pattern (90 bp):
GCCAGTGTAAGACATGTATGGGACATGCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCAGCCACGAGATGA
Found at i:69768582 original size:46 final size:43
Alignment explanation
Indices: 69768381--69768584 Score: 162
Period size: 46 Copynumber: 4.5 Consensus size: 43
69768371 GACGAGGGCT
* * * *
69768381 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGA-CAT--GTG-C
* * *
69768427 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAG-CTACGACATG-T-G-C
* * *
69768473 AGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGTGC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
*
69768516 TAGTGTAAGACATGTATGGGACATGCGTCAGC-ACGGTTACATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCGTCAGCTAC-G--ACATGTG-C
*
69768563 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
69768585 CGGCATCGAC
Statistics
Matches: 136, Mismatches: 12, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
43 3 0.02
44 31 0.23
45 3 0.02
46 96 0.71
47 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
Found at i:69774519 original size:46 final size:45
Alignment explanation
Indices: 69774468--69774634 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 45
69774458 GACGAGGGCT
69774468 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* * *
69774514 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGAGCC
* * * * * *
69774560 AGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCC
* *
69774604 AGTGTAAGACATGTATGGGACATGCGTCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
69774635 ACGGTTACAT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.02
44 32 0.30
46 70 0.66
47 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:69774564 original size:92 final size:90
Alignment explanation
Indices: 69774417--69774628 Score: 246
Period size: 92 Copynumber: 2.3 Consensus size: 90
69774407 AGATTTGTGT
* * * *
69774417 GCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTATGGGACAT-GCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGT
69774482 CTGGGACATGCATCAGCCAC-AGTATGAGA
64 CTGGGACATGCATCAGCCACGAG-AT--GA
* * * * *
69774511 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTCAGACATGTCT
1 GCCAGTGTAAGACATGTATGGGACATGCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
* * * *
69774576 GGGACATGCGTCGGCTACGAGATGT
66 GGGACATGCATCAGCCACGAGATGA
*
69774601 GCTAGTGTAAGACATGTATGGGACATGC
1 GCCAGTGTAAGACATGTATGGGACATGC
69774629 GTCAGCACGG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
90 27 0.26
92 49 0.48
93 14 0.14
94 12 0.12
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.22
Consensus pattern (90 bp):
GCCAGTGTAAGACATGTATGGGACATGCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCAGCCACGAGATGA
Found at i:69774669 original size:46 final size:43
Alignment explanation
Indices: 69774468--69774671 Score: 162
Period size: 46 Copynumber: 4.5 Consensus size: 43
69774458 GACGAGGGCT
* * * *
69774468 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGA-CAT--GTG-C
* * *
69774514 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAG-CTACGACATG-T-G-C
* * *
69774560 AGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGTGC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
*
69774603 TAGTGTAAGACATGTATGGGACATGCGTCAGC-ACGGTTACATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCGTCAGCTAC-G--ACATGTG-C
*
69774650 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
69774672 CGGCATCGAC
Statistics
Matches: 136, Mismatches: 12, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
43 3 0.02
44 31 0.23
45 3 0.02
46 96 0.71
47 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
Found at i:69782744 original size:30 final size:30
Alignment explanation
Indices: 69782708--69782838 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
69782698 GACAAGATTG
* * * * *
69782708 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
69782738 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
69782766 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69782796 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69782825 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69782839 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:69782799 original size:58 final size:58
Alignment explanation
Indices: 69782708--69782838 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
69782698 GACAAGATTG
* * * * * *
69782708 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
69782766 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
69782825 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69782839 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:69784684 original size:12 final size:12
Alignment explanation
Indices: 69784667--69784695 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
69784657 TAGAGGTACT
69784667 CGTGGTAGAGGC
1 CGTGGTAGAGGC
69784679 CGTGGTAGAGGC
1 CGTGGTAGAGGC
69784691 CGTGG
1 CGTGG
69784696 AGGTGCTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.17, G:0.52, T:0.17
Consensus pattern (12 bp):
CGTGGTAGAGGC
Done.