Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 237 of 345
Found at i:69787268 original size:48 final size:47
Alignment explanation
Indices: 69787192--69787330 Score: 154
Period size: 48 Copynumber: 2.9 Consensus size: 47
69787182 TACCACGGTT
* * *
69787192 ATACGTGTAACGTGGTGCTCAGTGGATATACCATGATTACACATATTG
1 ATACATGTAACGTGGTGCT-AGTGGATATACCACGATTACACATATCG
* * * *
69787240 ATACATGTAACATGGTGCTATGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTA-GTGGATATACCACGATTACACATATCG
* * *
69787288 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCT-AGTGGATATACCACGATTACACAT
69787331 GTAACGTGGT
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
47 32 0.42
48 45 0.58
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (47 bp):
ATACATGTAACGTGGTGCTAGTGGATATACCACGATTACACATATCG
Found at i:69787345 original size:38 final size:38
Alignment explanation
Indices: 69787294--69787370 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
69787284 ATCGATTCAT
69787294 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
69787332 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
69787370 T
1 T
69787371 TAATTTGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:69802046 original size:26 final size:26
Alignment explanation
Indices: 69802015--69802067 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
69802005 AACATACTAG
*
69802015 ATTCCTTATTTATTATTTATATACTT
1 ATTCCTTATTCATTATTTATATACTT
*
69802041 ATTCCTTATTCCTTATTTATATACTT
1 ATTCCTTATTCATTATTTATATACTT
69802067 A
1 A
69802068 CTTACTAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.58
Consensus pattern (26 bp):
ATTCCTTATTCATTATTTATATACTT
Found at i:69807589 original size:40 final size:40
Alignment explanation
Indices: 69807552--69807736 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
69807542 GCTACTCGTT
*
69807552 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69807592 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
69807632 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
69807671 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69807712 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69807737 CATCATTCGA
Statistics
Matches: 133, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 42 0.32
40 78 0.59
41 13 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69807664 original size:79 final size:82
Alignment explanation
Indices: 69807552--69807736 Score: 256
Period size: 79 Copynumber: 2.3 Consensus size: 82
69807542 GCTACTCGTT
*
69807552 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
69807615 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
69807632 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
69807695 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
69807712 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69807737 CATCATTCGA
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.60
80 34 0.37
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:69815812 original size:40 final size:40
Alignment explanation
Indices: 69815775--69815960 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
69815765 GCTACTCGTT
*
69815775 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69815815 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
69815855 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
69815895 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69815936 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69815961 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69820405 original size:15 final size:15
Alignment explanation
Indices: 69820349--69820413 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
69820339 TAAAGATAAC
*
69820349 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69820363 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
69820378 GTA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
69820393 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
69820408 AAGAAA
1 AAGAAA
69820414 CCCAAGATGC
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 10 0.24
15 29 0.71
16 2 0.05
ACGTcount: A:0.62, C:0.14, G:0.14, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69820415 original size:30 final size:31
Alignment explanation
Indices: 69820349--69820417 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
69820339 TAAAGATAAC
*
69820349 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
*
69820379 TA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
69820408 AAGAAACCCA
1 AAGAAACCCA
69820418 AGATGCGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 8 0.24
30 25 0.76
ACGTcount: A:0.59, C:0.17, G:0.13, T:0.10
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:69825860 original size:20 final size:20
Alignment explanation
Indices: 69825835--69825875 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
69825825 GAACCATGAG
69825835 ATTGTGCATCGACTATCGTC
1 ATTGTGCATCGACTATCGTC
69825855 ATTGTGCATCGACTATCGTC
1 ATTGTGCATCGACTATCGTC
69825875 A
1 A
69825876 GTTGAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (20 bp):
ATTGTGCATCGACTATCGTC
Found at i:69835729 original size:24 final size:24
Alignment explanation
Indices: 69835675--69835755 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
69835665 GTCATGGTCG
* *
69835675 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTC-TATTGAGATGA-AAACA
69835701 GTAAGCTCTATTGAGATGAAAACTA
1 GTAAGCTCTATTGAGATGAAAAC-A
* *
69835726 -TAAGCTTTATTGAGTTG--AACA
1 GTAAGCTCTATTGAGATGAAAACA
69835747 GTAAGCTCT
1 GTAAGCTCT
69835756 TTCGAGCTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
21 1 0.02
22 10 0.21
24 19 0.40
25 10 0.21
26 8 0.17
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (24 bp):
GTAAGCTCTATTGAGATGAAAACA
Found at i:69835806 original size:23 final size:22
Alignment explanation
Indices: 69835746--69835806 Score: 52
Period size: 23 Copynumber: 2.7 Consensus size: 22
69835736 TGAGTTGAAC
*
69835746 AGTAAGCTCTT-TCGAGCTAAAT
1 AGTAAGCTCTTAT-GACCTAAAT
* **
69835768 CGATAAGCTCCAATGACCTGAAAT
1 AG-TAAGCTCTTATGACCT-AAAT
69835792 AGTAAGCTCTTATGA
1 AGTAAGCTCTTATGA
69835807 GCTATTACGA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
22 1 0.03
23 22 0.76
24 6 0.21
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (22 bp):
AGTAAGCTCTTATGACCTAAAT
Found at i:69839351 original size:39 final size:39
Alignment explanation
Indices: 69839261--69839522 Score: 382
Period size: 39 Copynumber: 6.7 Consensus size: 39
69839251 ACAAAGCATG
* * *
69839261 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
69839301 CGGGACTTTAGCCCGGATATAACACCGGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
69839341 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
69839380 CGGGACTTAGCTCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
69839419 TGGGACTTAGCCCAGATATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
69839458 CAGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
69839497 CGGGACTTAGCCTGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
69839523 TTATAAAGTC
Statistics
Matches: 202, Mismatches: 19, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 181 0.90
40 21 0.10
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:69839628 original size:28 final size:28
Alignment explanation
Indices: 69839596--69839675 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 28
69839586 TTTAATAATT
** *
69839596 AATATTTTTCACACTAAGTGTCATTCTC
1 AATATTTCGCACACTAAGTGCCATTCTC
*
69839624 AATATTTCGCACATTAAGTGCCATTCTC
1 AATATTTCGCACACTAAGTGCCATTCTC
* * *
69839652 AATATTTCGTACACTGAGTACCAT
1 AATATTTCGCACACTAAGTGCCAT
69839676 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (28 bp):
AATATTTCGCACACTAAGTGCCATTCTC
Found at i:69846344 original size:40 final size:40
Alignment explanation
Indices: 69846265--69846422 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
69846255 TTCGAATGAT
* * * *
69846265 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
69846305 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
69846345 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
69846385 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
69846423 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:69846443 original size:80 final size:80
Alignment explanation
Indices: 69846265--69846452 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
69846255 TTCGAATGAT
* *
69846265 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
69846330 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
69846345 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
69846406 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
69846426 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
69846453 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:69857404 original size:79 final size:82
Alignment explanation
Indices: 69857264--69857448 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
69857254 TCGAATGATG
* * *
69857264 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
69857328 CGTGCGAGAT-AATA-AA
66 CGTGCGAG-TCAATATAA
* **
69857344 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
69857406 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
69857424 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69857449 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:69857428 original size:40 final size:40
Alignment explanation
Indices: 69857265--69857456 Score: 169
Period size: 40 Copynumber: 4.8 Consensus size: 40
69857255 CGAATGATGT
* * * *
69857265 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
* * * * *
69857305 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGAT-AATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TCACTAAAC
* *
69857345 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
69857384 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
** *
69857424 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
69857457 GTTATATCCG
Statistics
Matches: 124, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
39 31 0.25
40 82 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:69857479 original size:79 final size:79
Alignment explanation
Indices: 69857264--69857481 Score: 176
Period size: 79 Copynumber: 2.7 Consensus size: 79
69857254 TCGAATGATG
* * * * ** *
69857264 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
69857327 TCGTGCGAGATAATAAA
63 TCGTGCGAGATAATAAA
* * * *
69857344 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
69857409 TGCGAG-TCACTATAA
66 TGCGAGAT-AATA-AA
** * ** * *
69857424 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
69857482 TACGTGATTC
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
78 1 0.01
79 68 0.60
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGATAATAAA
Found at i:69877698 original size:30 final size:30
Alignment explanation
Indices: 69877664--69877724 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69877654 TCCTCAACTC
69877664 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
69877694 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
69877724 A
1 A
69877725 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:69883185 original size:40 final size:41
Alignment explanation
Indices: 69883141--69883362 Score: 255
Period size: 40 Copynumber: 5.6 Consensus size: 41
69883131 GCTACTCGTT
* * *
69883141 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
* *
69883181 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
69883221 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
69883261 CAAATGCCTTC-GGATCTTAGTCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
69883300 CAATTGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
*
69883341 CAGA-GCCTTCGGGA-CTTAGCCC
1 CAAATGCCTTCGGGATCTTAGCCC
69883363 AGACATCATT
Statistics
Matches: 162, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 41 0.25
40 110 0.68
41 11 0.07
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:69883359 original size:79 final size:81
Alignment explanation
Indices: 69883169--69883359 Score: 266
Period size: 79 Copynumber: 2.4 Consensus size: 81
69883159 AGCCCGGTTA
* *
69883169 TAGTAGCTCGCACAAATGCCTTCGGGACTTA-TCCCGGATTTAGTAACTCACACAAATGCCTTCG
1 TAGTAACTAGCACAAATGCCTTCGGGACTTAGTCCCGGATTTAGTAACTCACACAAATGCCTTCG
*
69883233 GATCTTAGTCTGGATT
66 GATCTTAGTCCGGATT
* * *
69883249 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CC-GATTTAGTAACTCGCACAATTGCCTTC
1 TAGTAACTAGCACAAATGCCTTCGGGA-CTTAGTCCCGGATTTAGTAACTCACACAAATGCCTTC
69883311 GGATCTTAGTCCGGATT
65 GGATCTTAGTCCGGATT
*
69883328 TAGTAACTTAGCACAGA-GCCTTCGGGACTTAG
1 TAGTAAC-TAGCACAAATGCCTTCGGGACTTAG
69883360 CCCAGACATC
Statistics
Matches: 101, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
79 62 0.61
80 38 0.38
81 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (81 bp):
TAGTAACTAGCACAAATGCCTTCGGGACTTAGTCCCGGATTTAGTAACTCACACAAATGCCTTCG
GATCTTAGTCCGGATT
Found at i:69894097 original size:24 final size:24
Alignment explanation
Indices: 69894065--69894115 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
69894055 GCTGAATAAA
69894065 ATATGGAATTAAATCTTATTGAGT
1 ATATGGAATTAAATCTTATTGAGT
69894089 ATATGGAATTAAATCTTATTGAGT
1 ATATGGAATTAAATCTTATTGAGT
69894113 ATA
1 ATA
69894116 GTTTCTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (24 bp):
ATATGGAATTAAATCTTATTGAGT
Found at i:69903016 original size:15 final size:15
Alignment explanation
Indices: 69902998--69903026 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
69902988 ATATTTATAA
69902998 AATTATTATTATTAT
1 AATTATTATTATTAT
69903013 AATTATTATTATTA
1 AATTATTATTATTA
69903027 GATAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:69905093 original size:27 final size:27
Alignment explanation
Indices: 69905061--69905121 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
69905051 TTTATTAAAC
* *
69905061 TACCCCTAAGTATG-AAAATTACCATTT
1 TACCCCTAAG-ATGCAAAATGACCATTA
*
69905088 TACCCCT-AGGTGCAAAATGACCATTA
1 TACCCCTAAGATGCAAAATGACCATTA
69905114 TACCCCTA
1 TACCCCTA
69905122 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.69
27 7 0.24
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (27 bp):
TACCCCTAAGATGCAAAATGACCATTA
Found at i:69906633 original size:55 final size:54
Alignment explanation
Indices: 69906504--69906700 Score: 206
Period size: 55 Copynumber: 3.6 Consensus size: 54
69906494 TTGGTAAGAT
* * *
69906504 AAGGATAT-CATGTAAGACCATGCCAA-AGCATGGCATTAATAAGTCCTATAAGGC
1 AAGGAT-TCCATGTAAGACCATGCCAAGA-CATGGCATTGATGAGTTCTATAAGGC
* *
69906558 AAGGAAAT-CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGG-ATTCCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* ** *
69906613 AAAGG-TTCCATGTAAGACCATGCCAAGGCATGAAATTGGTGAGTTC-ATAAGGC
1 -AAGGATTCCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
69906666 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATTCCATGTAAGACCATGCCAAGACATGGCA
69906701 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
52 4 0.03
53 31 0.26
54 38 0.32
55 43 0.36
56 4 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (54 bp):
AAGGATTCCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:69906712 original size:53 final size:54
Alignment explanation
Indices: 69906504--69906711 Score: 199
Period size: 54 Copynumber: 3.9 Consensus size: 54
69906494 TTGGTAAGAT
* * * *
69906504 AAGGATATCATGTAAGACCATGCCAA-AGCATGGCATTAATAAGTCCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGA-CATGGCAATGATAAGTTCTATAAGGC
* * * * *
69906558 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTT-CTATAAGGC
* * * * *
69906613 AAAGG-TTCCATGTAAGACCATGCCAAGGCAT-GAAATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGATAAGTTCTATAAGGC
* * *
69906666 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTC
69906712 AAAAAGGAAA
Statistics
Matches: 129, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
52 4 0.03
53 38 0.29
54 44 0.34
55 39 0.30
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCTATAAGGC
Found at i:69912356 original size:13 final size:13
Alignment explanation
Indices: 69912338--69912366 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
69912328 AATGTGATCT
69912338 ACGGCCAAGGCAC
1 ACGGCCAAGGCAC
69912351 ACGGCCAAGGCAC
1 ACGGCCAAGGCAC
69912364 ACG
1 ACG
69912367 CCCGTGTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.38, G:0.31, T:0.00
Consensus pattern (13 bp):
ACGGCCAAGGCAC
Found at i:69913626 original size:48 final size:48
Alignment explanation
Indices: 69913561--69913875 Score: 277
Period size: 48 Copynumber: 6.6 Consensus size: 48
69913551 CAAGGTAGGG
* * * ** *
69913561 TGCCAATGTCATATCCCAGATATGGTCTTACATATGACCACATAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
*
69913609 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA-CAT-A
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
* * * * * *
69913655 T-CGAAT-CCGATAG-CCCAG-CTATGGTCTTACACGATG-TCTCATTATCA
1 TGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATAATGA
*
69913702 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
* * * *
69913750 TGCCAAAGCCATATCCCAGACATCGTCTTACATGGGATCACATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
* * * * * * *
69913798 TGCAAAAGTCATGTCCCAAACATGGTCTTACATGCGATCACAT-GTCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
* * *
69913845 CTGCCGATGCCATATCCCAGATATGGTCTTA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTA
69913876 TACGGGAGCT
Statistics
Matches: 217, Mismatches: 38, Indels: 24
0.78 0.14 0.09
Matches are distributed among these distances:
44 3 0.01
45 27 0.12
46 6 0.03
47 7 0.03
48 171 0.79
49 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
Found at i:69925760 original size:29 final size:29
Alignment explanation
Indices: 69925726--69925828 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
69925716 TAATCAGCCG
** *
69925726 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
69925755 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
69925784 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
69925813 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
69925829 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:69927575 original size:48 final size:48
Alignment explanation
Indices: 69927504--69927815 Score: 253
Period size: 48 Copynumber: 6.6 Consensus size: 48
69927494 GGTAGGGTGT
* * * *
69927504 CAATGCCATATCCCAGATATGGTCTTACATGGGACCACATAATGATGC
1 CAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATAATGATGC
* *
69927552 CAATGCCATGTCCTAAACATGGTCTTACATGGGATCACA-CAT-ATTG-
1 CAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATAATGA-TGC
* *** * * * *
69927598 -AA-GCTGATAG-CCCAGTTATGGTCTTACACGATG-TCTCATTATGATGC
1 CAATGC-CAT-GTCCCAAACATGGTCTTACATG-GGATCACATAATGATGC
* ** *
69927645 CAATGCCATGTCTCGGACATGGTCTTACATGGGATCACATAACGATGC
1 CAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATAATGATGC
* *
69927693 CAAAGCCATGTCCCAAACATGGTCTTACATGGGATCACATAACGATGC
1 CAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATAATGATGC
* * * * * *
69927741 TAAAGTCATGTCCCAAACATGGTCTTACATGCGATCACAT-GTCATTGC
1 CAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATAATGA-TGC
* * * *
69927789 CGATGCCATATCCCAGATATGGTCTTA
1 CAATGCCATGTCCCAAACATGGTCTTA
69927816 TACGGGAGCT
Statistics
Matches: 210, Mismatches: 42, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
44 2 0.01
45 23 0.11
46 7 0.03
47 8 0.04
48 168 0.80
49 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
CAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATAATGATGC
Found at i:69930904 original size:56 final size:56
Alignment explanation
Indices: 69930844--69930980 Score: 238
Period size: 56 Copynumber: 2.4 Consensus size: 56
69930834 TCCCAGACAG
*
69930844 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* * *
69930900 GGTCTTACTTGCACACATATATTGAAGTCACATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
69930956 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
69930981 TGCCATGGTC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:69931613 original size:15 final size:15
Alignment explanation
Indices: 69931590--69931620 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69931580 TCAAAAATTC
69931590 CAATACAAAACATAT
1 CAATACAAAACATAT
*
69931605 CAATCCAAAACATAT
1 CAATACAAAACATAT
69931620 C
1 C
69931621 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:69932152 original size:14 final size:15
Alignment explanation
Indices: 69932135--69932163 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
69932125 ACACAAAAAT
69932135 TTCACACAT-ATAAA
1 TTCACACATAATAAA
69932149 TTCACACATAATAAA
1 TTCACACATAATAAA
69932164 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:69934080 original size:16 final size:16
Alignment explanation
Indices: 69934051--69934084 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
69934041 AAAATTCAAT
*
69934051 TATCATATAGTTATTC
1 TATCAAATAGTTATTC
*
69934067 TATCAAATATTTATTC
1 TATCAAATAGTTATTC
69934083 TA
1 TA
69934085 ATATATTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.12, G:0.03, T:0.50
Consensus pattern (16 bp):
TATCAAATAGTTATTC
Found at i:69938410 original size:31 final size:31
Alignment explanation
Indices: 69938375--69938437 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
69938365 CTTTAATTAA
*
69938375 ATGTATGAA-ATTGAATCAAAATTAAAGTTTC
1 ATGTATGAATA-TAAATCAAAATTAAAGTTTC
* *
69938406 ATGTATGTATATAAATCAAAATTCAAGTTTC
1 ATGTATGAATATAAATCAAAATTAAAGTTTC
69938437 A
1 A
69938438 AGTGCATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 27 0.96
32 1 0.04
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (31 bp):
ATGTATGAATATAAATCAAAATTAAAGTTTC
Found at i:69940500 original size:27 final size:27
Alignment explanation
Indices: 69940469--69940523 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
69940459 CAAGAATTGA
69940469 GTCAAAAAGCCAATATATGAGGAAAAG
1 GTCAAAAAGCCAATATATGAGGAAAAG
69940496 GTCAAAAAGCCAATATATGAGGAAAAG
1 GTCAAAAAGCCAATATATGAGGAAAAG
69940523 G
1 G
69940524 GAAAATTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.51, C:0.11, G:0.24, T:0.15
Consensus pattern (27 bp):
GTCAAAAAGCCAATATATGAGGAAAAG
Found at i:69945211 original size:46 final size:44
Alignment explanation
Indices: 69945044--69945214 Score: 150
Period size: 47 Copynumber: 3.7 Consensus size: 44
69945034 TGTGTGAGCT
* ** *
69945044 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGGGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGACGAT--GTG-C
* * * *
69945090 AATGTAAGACCATGTTTGGGATATGGCATCGGCATTAAGACGA-GTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--TACGACGATGTGC
69945137 TAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCTACGACGATGTG-C
69945182 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
69945215 ACCTGCACCC
Statistics
Matches: 103, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
43 2 0.02
44 16 0.16
45 15 0.15
46 24 0.23
47 25 0.24
48 18 0.17
50 1 0.01
51 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGACGATGTGC
Found at i:69945952 original size:13 final size:13
Alignment explanation
Indices: 69945934--69945962 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
69945924 GGTAGACACA
69945934 AGGGCGTGTGTCT
1 AGGGCGTGTGTCT
69945947 AGGGCGTGTGTCT
1 AGGGCGTGTGTCT
69945960 AGG
1 AGG
69945963 CCATGTGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.14, G:0.48, T:0.28
Consensus pattern (13 bp):
AGGGCGTGTGTCT
Found at i:69948172 original size:20 final size:20
Alignment explanation
Indices: 69948149--69948195 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
69948139 GGTAAAGATA
69948149 AGCTAAAAACGTGCTCATTG
1 AGCTAAAAACGTGCTCATTG
*
69948169 AGCTGAAAACGTGCTCATTG
1 AGCTAAAAACGTGCTCATTG
69948189 AGCTAAA
1 AGCTAAA
69948196 CAAACTGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (20 bp):
AGCTAAAAACGTGCTCATTG
Found at i:69952840 original size:20 final size:21
Alignment explanation
Indices: 69952817--69952866 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
69952807 AAGGTAAAGA
*
69952817 TGAGCTCAAAACAAGCT-CAT
1 TGAGCTCAAAACAAGCTGAAT
* *
69952837 TGAGCTAAAAACGAGCTGAAT
1 TGAGCTCAAAACAAGCTGAAT
69952858 TGAGCTCAA
1 TGAGCTCAA
69952867 CAAACTGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (21 bp):
TGAGCTCAAAACAAGCTGAAT
Found at i:69954443 original size:21 final size:20
Alignment explanation
Indices: 69954411--69954453 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
69954401 TTTTCCATGA
69954411 TTAGATTCAA-TTGTTATATG
1 TTAGATTCAATTTG-TATATG
*
69954431 TTAGCATTTAATTTGTATATG
1 TTAG-ATTCAATTTGTATATG
69954452 TT
1 TT
69954454 TTTCTATTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 13 0.65
22 3 0.15
ACGTcount: A:0.28, C:0.05, G:0.14, T:0.53
Consensus pattern (20 bp):
TTAGATTCAATTTGTATATG
Found at i:69956086 original size:3 final size:3
Alignment explanation
Indices: 69956078--69956115 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
69956068 AAACAGTAGA
69956078 GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GC
1 GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GC
69956116 ATCCCCCTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.34, G:0.66, T:0.00
Consensus pattern (3 bp):
GCG
Found at i:69962821 original size:3 final size:3
Alignment explanation
Indices: 69962813--69962866 Score: 56
Period size: 3 Copynumber: 17.0 Consensus size: 3
69962803 AATATGGGTG
*
69962813 ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CATA TATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA
69962861 ATA ATA
1 ATA ATA
69962867 GTCAGAAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 1 0.02
3 34 0.74
4 11 0.24
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:69962951 original size:3 final size:3
Alignment explanation
Indices: 69962938--69963019 Score: 50
Period size: 3 Copynumber: 27.3 Consensus size: 3
69962928 GAGGGTATAT
69962938 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
69962982 ATA ATA ATA AT- ATAA ATA ATA GTA A-A AAA ATA A-A ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
69963020 AAAAAATAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
2 11 0.17
3 42 0.66
4 9 0.14
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:69962964 original size:18 final size:18
Alignment explanation
Indices: 69962934--69963002 Score: 86
Period size: 18 Copynumber: 3.7 Consensus size: 18
69962924 TGGAGAGGGT
69962934 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
69962952 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
*
69962971 CATGAGAAATAATAATAATA
1 -AT-ATAAATAATAATAATA
69962991 ATATAAATAATA
1 ATATAAATAATA
69963003 GTAAAAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
17 3 0.07
18 20 0.44
19 5 0.11
20 5 0.11
21 12 0.27
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:69963554 original size:30 final size:30
Alignment explanation
Indices: 69963520--69963605 Score: 163
Period size: 30 Copynumber: 2.9 Consensus size: 30
69963510 ATTTGATGGT
*
69963520 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
69963550 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
69963580 GTAGGTGCAAGTGGGAGGCAAGGTGG
1 GTAGGTGCAAGTGGGAGGCAAGGTGG
69963606 CTAGGATTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.24, C:0.07, G:0.52, T:0.16
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
Found at i:69963603 original size:18 final size:18
Alignment explanation
Indices: 69963552--69963604 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
69963542 GTGGTGGAGT
69963552 AGGTGCAAGTGGGAGGCA
1 AGGTGCAAGTGGGAGGCA
*
69963570 AGGTG---GT-GGA-G-T
1 AGGTGCAAGTGGGAGGCA
69963582 AGGTGCAAGTGGGAGGCA
1 AGGTGCAAGTGGGAGGCA
69963600 AGGTG
1 AGGTG
69963605 GCTAGGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 5 0.19
13 1 0.04
14 3 0.11
15 4 0.15
16 3 0.11
17 1 0.04
18 10 0.37
ACGTcount: A:0.25, C:0.08, G:0.53, T:0.15
Consensus pattern (18 bp):
AGGTGCAAGTGGGAGGCA
Found at i:69964300 original size:78 final size:79
Alignment explanation
Indices: 69964205--69964444 Score: 232
Period size: 87 Copynumber: 2.9 Consensus size: 79
69964195 TTAAGATCTG
* * * * *
69964205 TAAATTTAGCCTGTTACCTTACTGTTTAGGGG-TTAAGGCTTGTCACCTTCGATCTGTTTCCCTA
1 TAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCACCTTCGATCTGTTTCCCCA
*
69964269 CTGTTTAGGGTCTA
66 CTGCTTAGGGTCTA
** *
69964283 TAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCGTCTTTGATCTGTTTCCCCA
1 TAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCACCTTCGATCTGTTTCCCCA
*
69964348 CTGCTTAGGGGGTTAAGATCTG
66 CTGCTTA---GG----G-TCTA
* * ** * * *
69964370 TAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTG-CTCCACT
1 TAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCACCTTCGATCTGTTTCC-CC
69964434 ACTGCTTAGGG
65 ACTGCTTAGGG
69964445 AGATAAGATC
Statistics
Matches: 134, Mismatches: 18, Indels: 18
0.79 0.11 0.11
Matches are distributed among these distances:
78 29 0.22
79 33 0.25
80 1 0.01
82 2 0.01
84 2 0.01
86 4 0.03
87 63 0.47
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (79 bp):
TAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCACCTTCGATCTGTTTCCCCA
CTGCTTAGGGTCTA
Found at i:69964318 original size:43 final size:43
Alignment explanation
Indices: 69964271--69964408 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 43
69964261 TTTCCCTACT
*
69964271 GTTTAGGGTCTATAAATTTAACCTGTTACCCTACTGCTTAGGG
1 GTTTAAGGTCTATAAATTTAACCTGTTACCCTACTGCTTAGGG
*** * * * *
69964314 GTTTAAGG-CTTATCGTCTTTGATCTGTTTCCCCACTGCTTAGGG
1 GTTTAAGGTC-TAT-AAATTTAACCTGTTACCCTACTGCTTAGGG
* * * * *
69964358 GGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
1 GTTTAAGGTCTATAAATTTAACCTGTTACCCTACTGCTTAGGG
69964401 GTTTAAGG
1 GTTTAAGG
69964409 CCCATCATCT
Statistics
Matches: 70, Mismatches: 22, Indels: 6
0.71 0.22 0.06
Matches are distributed among these distances:
42 1 0.01
43 37 0.53
44 31 0.44
45 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (43 bp):
GTTTAAGGTCTATAAATTTAACCTGTTACCCTACTGCTTAGGG
Found at i:69964616 original size:172 final size:173
Alignment explanation
Indices: 69964132--69964839 Score: 786
Period size: 172 Copynumber: 4.1 Consensus size: 173
69964122 TTCAGCTTGG
* * * * * *
69964132 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTATTTCCCTACTGTTTAGGGTGTT
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTCTCCCTACTGCTTAGGGGGTT
* * * * * *
69964197 AAGATCTGTAAATTTAGCCTGTTACCTTACTGTTTAGGGG-TTAAG-GCTTGTCACCTTCGATCT
66 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCATCTTCGATCT
* * ** *
69964260 GTTTCCCTACTGTTTAGGGTCTATAA-AT-T-TAA-----CCTGT
130 GTCTCCCTACTGCTTAGGG-AGATAAGATCTGCAATTCGGCCTGT
* * * * *
69964297 TACCCTACTGCTTAGGGGTTTAAG-GCTTATCGTCTTTGATCTGTTTCCCCACTGCTTAGGGGGT
1 TACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTGTCTCCCTACTGCTTAGGGGGT
* *
69964361 TAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCT
65 TAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCT
* *
69964426 G-CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGGTCTGT
130 GTCTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTCGGCCTGT
*
69964470 TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGTCTCCCTACTG-TATAGGGGGT
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTCTCCCTACTGCT-TAGGGGGT
* ** * * *
69964534 TAAGATCTG-GAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTTGATCT
65 TAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCT
*
69964598 G-CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGT
130 GTCTCC-CTACTGCTTAGGGAGATAAGATCTGCAATTCGGCCTGT
* * *
69964642 TACCCTACTACTTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGGGAGA
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTCTCC-CTACTGCTTAGGGGGT
* * * * *
69964706 TAAGATCTG-CAATTCGGTCTGTTACCCTACTACTTAGGGGTTTAAGACCCTTCGTCTTCGATCT
65 TAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCT
* * * * *
69964770 GTTTCCCTACTGCTTAGGG-GTTTAAAATCTGGAAATTCAGCCTGT
130 GTCTCCCTACTGCTTAGGGAG-ATAAGATCT-GCAATTCGGCCTGT
69964815 TACCCTACTGCTTAGGGGTTTAAGA
1 TACCCTACTGCTTAGGGGTTTAAGA
69964840 TCTGTAAATT
Statistics
Matches: 473, Mismatches: 51, Indels: 30
0.85 0.09 0.05
Matches are distributed among these distances:
164 1 0.00
165 99 0.21
166 32 0.07
167 2 0.00
168 2 0.00
171 5 0.01
172 225 0.48
173 105 0.22
174 2 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (173 bp):
TACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTCTCCCTACTGCTTAGGGGGTT
AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTG
TCTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGCCTGT
Found at i:69964708 original size:258 final size:258
Alignment explanation
Indices: 69964122--69964839 Score: 897
Period size: 258 Copynumber: 2.8 Consensus size: 258
69964112 AGTTGTAATT
* * **
69964122 TTCAGCTTGGTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTATTTCC-CTACTG
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCT-GCTCCACTACTG
* * * * * * * * * *
69964186 TTTAGGGTGTTAAGATCTGTAAATTTAGCCTGTTACCTTACTGTTTAGGGG-TTAAG-GCTTGTC
65 CTTAGGGAGATAAGATCTG-CAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TC
* * *
69964249 ACCTTCGATCTGTTTCCCTACTGTTTA--GGGTCT--A--T-AAATTTAACCTGTTACCCTACTG
128 ATCTTCGATCTGTTTCCCTACTG-TTAGGGGGT-TAAATCTGGAATTTAGCCTGTTACCCTACTG
* * * * *
69964307 CTTAGGGGTTTAAG-GCTTATCGTCTTTGATCTGTTTCCCCACTGCTTAGGGGGTTAAGATCTGT
191 CTTAGGGGTTTAAGACCCTATCGTCTTTGATCTGTCTCCCCACTGCTTAGGGAGATAAGATCTGT
69964371 AAA
256 AAA
*
69964374 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGCTCCACTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGCTCCACTACTGC
69964439 TTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCATC
66 TTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCATC
* * *
69964504 TTCGATCTGTCTCCCTACTGTATAGGGGGTTAAGATCTGGAATTTGGTCTGTTACCCTACTGCTT
131 TTCGATCTGTTTCCCTACTGT-TAGGGGGTTAA-ATCTGGAATTTAGCCTGTTACCCTACTGCTT
* *
69964569 AGGGGTTTAAGACCCT-TCGTCTTTGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTG-CA
194 AGGGGTTTAAGACCCTATCGTCTTTGATCTGTCTCC-CCACTGCTTAGGGAGATAAGATCTGTAA
69964631 A
258 A
* * * * *
69964632 TTCGGTCTGTTACCCTACTACTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGCTCCACTACTGC
* * *
69964697 TTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACTACTTAGGGGTTTAAGACCCTTCGTC
66 TTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCATC
* *
69964762 TTCGATCTGTTTCCCTACTGCTTAGGGGTTTAAAATCTGGAAATTCAGCCTGTTACCCTACTGCT
131 TTCGATCTGTTTCCCTACTG-TTAGGGGGTT-AAATCTGG-AATTTAGCCTGTTACCCTACTGCT
69964827 TAGGGGTTTAAGA
193 TAGGGGTTTAAGA
69964840 TCTGTAAATT
Statistics
Matches: 407, Mismatches: 42, Indels: 27
0.86 0.09 0.06
Matches are distributed among these distances:
251 30 0.07
252 101 0.25
253 3 0.01
254 4 0.01
256 1 0.00
258 160 0.39
259 106 0.26
260 2 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (258 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGCAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCATC
TTCGATCTGTTTCCCTACTGTTAGGGGGTTAAATCTGGAATTTAGCCTGTTACCCTACTGCTTAG
GGGTTTAAGACCCTATCGTCTTTGATCTGTCTCCCCACTGCTTAGGGAGATAAGATCTGTAAA
Found at i:69964824 original size:43 final size:43
Alignment explanation
Indices: 69964768--69964880 Score: 181
Period size: 43 Copynumber: 2.6 Consensus size: 43
69964758 CGTCTTCGAT
*
69964768 CTGTTTCCCTACTGCTTAGGGGTTTAAAATCTGGAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAAATCTGGAAATTCAGC
* * *
69964811 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAAATCTGGAAATTCAGC
*
69964854 CTGTTACCCTACTGCTTAGGGGGTTAA
1 CTGTTACCCTACTGCTTAGGGGTTTAA
69964881 GGCTTGTGGA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAAATCTGGAAATTCAGC
Found at i:69964873 original size:86 final size:84
Alignment explanation
Indices: 69964132--69964839 Score: 711
Period size: 86 Copynumber: 8.3 Consensus size: 84
69964122 TTCAGCTTGG
* * * * *
69964132 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTATTTCCCTACTGTTTAGGGTGTT
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCT-GTTCCCTACTGCTTAGGG-GTT
* ** *
69964197 AAGATCTGTAAATTTAGCCTGT
64 AAGATCTG-CAATTCGGTCTGT
* * * * * *
69964219 TACCTTACTGTTTAGGGG-TTAAG-GCTTGTCACCTTCGATCTGTTTCCCTACTGTTTA-GGGTC
1 TACCCTACTGCTTAGGGGTTTAAGACCCT-TCATCTTCGATCTG-TTCCCTACTGCTTAGGGGT-
* *
69964281 TATAAAT-T-TAA--C---CTGT
63 TA-AGATCTGCAATTCGGTCTGT
* * * * *
69964297 TACCCTACTGCTTAGGGGTTTAAG-GCTTATCGTCTTTGATCTGTTTCCCCACTGCTTAGGGGGT
1 TACCCTACTGCTTAGGGGTTTAAGACCCT-TCATCTTCGATCTG-TTCCCTACTGCTTA-GGGGT
* * *
69964361 TAAGATCTGTAAATTCAGCCTGT
63 TAAGATCTG-CAATTCGGTCTGT
* * * *
69964384 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTCC-CTACTGCTTAGGG-GTT
*
69964449 AAGATCTGCAATTTGGTCTGT
64 AAGATCTGCAATTCGGTCTGT
69964470 TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGTCTCCCTACTG-TATAGGGGGT
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGT-TCCCTACTGCT-TA-GGGGT
* *
69964534 TAAGATCTGGAATTTGGTCTGT
63 TAAGATCTGCAATTCGGTCTGT
* * * *
69964556 TACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGAT
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTCC-CTACTGCTTAGGG-GTT
69964621 AAGATCTGCAATTCGGTCTGT
64 AAGATCTGCAATTCGGTCTGT
* * * *
69964642 TACCCTACTACTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTCC-CTACTGCTTAGGG-GTT
69964707 AAGATCTGCAATTCGGTCTGT
64 AAGATCTGCAATTCGGTCTGT
* *
69964728 TACCCTACTACTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGTTT
1 TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTG-TTCCCTACTGCTTAGGGG-TT
* * * *
69964793 AAAATCTGGAAATTCAGCCTGT
64 AAGATCT-GCAATTCGGTCTGT
69964815 TACCCTACTGCTTAGGGGTTTAAGA
1 TACCCTACTGCTTAGGGGTTTAAGA
69964840 TCTGTAAATT
Statistics
Matches: 541, Mismatches: 53, Indels: 54
0.83 0.08 0.08
Matches are distributed among these distances:
78 20 0.04
79 36 0.07
80 3 0.01
81 4 0.01
82 2 0.00
83 2 0.00
84 3 0.01
85 14 0.03
86 336 0.62
87 120 0.22
88 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (84 bp):
TACCCTACTGCTTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTCCCTACTGCTTAGGGGTTAA
GATCTGCAATTCGGTCTGT
Found at i:69965854 original size:52 final size:53
Alignment explanation
Indices: 69965747--69965860 Score: 158
Period size: 52 Copynumber: 2.2 Consensus size: 53
69965737 GCATAGCTCG
** * *
69965747 AAATGAATAAATTAATCAAAGATTGCAAATGCCATAAGAAATAAATTAACTCA
1 AAATGAATAAATTAATCAAAGAGAGCAAATGCAATAAGAAAGAAATTAACTCA
* * *
69965800 AAATGAATAAGTTAATCAAAGAGAGC-GATGCAATAAGAAGGAAATTAACTCA
1 AAATGAATAAATTAATCAAAGAGAGCAAATGCAATAAGAAAGAAATTAACTCA
69965852 AAATGAATA
1 AAATGAATA
69965861 TAGCAAATTC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
52 31 0.57
53 23 0.43
ACGTcount: A:0.54, C:0.10, G:0.14, T:0.22
Consensus pattern (53 bp):
AAATGAATAAATTAATCAAAGAGAGCAAATGCAATAAGAAAGAAATTAACTCA
Found at i:69966325 original size:198 final size:198
Alignment explanation
Indices: 69965982--69966367 Score: 691
Period size: 198 Copynumber: 1.9 Consensus size: 198
69965972 GATCCGAAGC
69965982 ACTTTGTTGATGCCCCAAGACGTAGCATACTTCTTCATTGTTAATTCAGGTATAGCAAGACTGTT
1 ACTTTGTTGATGCCCCAAGACGTAGCATACTTCTTCATTGTTAATTCAGGTATAGCAAGACTGTT
*
69966047 GTATGCCCCACTTGGATCCAAAATTGAGCCGCCCTTTCCAGGTTTTCAACTCAAATCCCCTTTGG
66 GTATGCCCCACTTGGATACAAAATTGAGCCGCCCTTTCCAGGTTTTCAACTCAAATCCCCTTTGG
* *
69966112 TCTCAAAGTGCCCTTTACGGGTTTTCGCTTTGGCCTCTCCTTTTTCTTCTATTTCTTTTTTTTTT
131 TCTCAAAGCGCCCTTTACGGGTTTTCGCTCTGGCCTCTCCTTTTTCTTCTATTTCTTTTTTTTTT
69966177 TTT
196 TTT
*
69966180 ACTTTGTTGATGCCCCAAGACGTAGCATATTTCTTCATTGTTAATTCAGGTATAGCAAGACTGTT
1 ACTTTGTTGATGCCCCAAGACGTAGCATACTTCTTCATTGTTAATTCAGGTATAGCAAGACTGTT
* * *
69966245 GTATGCCCTACTTGGATACAAATTTGAGCCGCCCTTTCCGGGTTTTCAACTCAAATCCCCTTTGG
66 GTATGCCCCACTTGGATACAAAATTGAGCCGCCCTTTCCAGGTTTTCAACTCAAATCCCCTTTGG
* *
69966310 TCTCAAAGCGCCCTTTGCGGGTTTTCGCTCTGGCCTCTCCTTTTTCTTCTCTTTCTTT
131 TCTCAAAGCGCCCTTTACGGGTTTTCGCTCTGGCCTCTCCTTTTTCTTCTATTTCTTT
69966368 CTTTCTTTCT
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
198 179 1.00
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.40
Consensus pattern (198 bp):
ACTTTGTTGATGCCCCAAGACGTAGCATACTTCTTCATTGTTAATTCAGGTATAGCAAGACTGTT
GTATGCCCCACTTGGATACAAAATTGAGCCGCCCTTTCCAGGTTTTCAACTCAAATCCCCTTTGG
TCTCAAAGCGCCCTTTACGGGTTTTCGCTCTGGCCTCTCCTTTTTCTTCTATTTCTTTTTTTTTT
TTT
Found at i:69969574 original size:9 final size:10
Alignment explanation
Indices: 69969561--69969605 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 10
69969551 GGGAAAGTCT
69969561 AATGCAAAT-
1 AATGCAAATG
*
69969570 AATGC-AATC
1 AATGCAAATG
69969579 AATGCAAATG
1 AATGCAAATG
*
69969589 TATG-AAATG
1 AATGCAAATG
69969598 AATGCAAA
1 AATGCAAA
69969606 AGAAAGGAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
8 3 0.10
9 18 0.60
10 9 0.30
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.22
Consensus pattern (10 bp):
AATGCAAATG
Found at i:69969603 original size:19 final size:18
Alignment explanation
Indices: 69969561--69969605 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
69969551 GGGAAAGTCT
*
69969561 AATGCAAATAATGCAATC
1 AATGCAAATAATGAAATC
* *
69969579 AATGCAAATGTATGAAATG
1 AATGCAAAT-AATGAAATC
69969598 AATGCAAA
1 AATGCAAA
69969606 AGAAAGGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.22
Consensus pattern (18 bp):
AATGCAAATAATGAAATC
Found at i:69971785 original size:3 final size:3
Alignment explanation
Indices: 69971777--69971848 Score: 101
Period size: 3 Copynumber: 23.0 Consensus size: 3
69971767 AATAAGGGTG
69971777 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
69971825 CAT- ATA TATA TATA TATA ATA ATA
1 -ATA ATA -ATA -ATA -ATA ATA ATA
69971849 GTAGTCAGAA
Statistics
Matches: 66, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.03
3 51 0.77
4 13 0.20
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:69971936 original size:3 final size:3
Alignment explanation
Indices: 69971923--69972002 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
69971913 GAGGGTATAT
69971923 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
69971967 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
69972003 AAAAAATAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:69971945 original size:12 final size:12
Alignment explanation
Indices: 69971921--69972003 Score: 71
Period size: 12 Copynumber: 6.6 Consensus size: 12
69971911 GAGAGGGTAT
69971921 ATATAATATAATA
1 ATATAA-ATAATA
69971934 ATATAAATAATA
1 ATATAAATAATA
69971946 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
69971961 ATA-ATAATAATA
1 ATATA-AATAATA
69971973 ATATAAATAATA
1 ATATAAATAATA
* *
69971985 GTAAAAATAATA
1 ATATAAATAATA
*
69971997 AAATAAA
1 ATATAAA
69972004 AAAAATAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 1 0.02
12 37 0.63
13 10 0.17
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:69971964 original size:21 final size:18
Alignment explanation
Indices: 69971923--69971984 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 18
69971913 GAGGGTATAT
*
69971923 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
69971940 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
69971961 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
69971979 ATAATA
1 ATAATA
69971985 GTAAAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.13
18 12 0.31
19 5 0.13
20 5 0.13
21 12 0.31
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Found at i:69971993 original size:27 final size:27
Alignment explanation
Indices: 69971921--69972010 Score: 73
Period size: 27 Copynumber: 3.4 Consensus size: 27
69971911 GAGAGGGTAT
* *
69971921 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* *
69971948 ATATACAT--GAG-AAATAATAATAATA
1 ATATAAATAATAGTAAA-AATAATAATA
69971973 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
* *
69971999 ATAAAAAAAATA
1 ATATAAATAATA
69972011 AAACAAAGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
23 2 0.04
24 10 0.20
25 7 0.14
26 13 0.26
27 15 0.30
28 3 0.06
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:69973870 original size:93 final size:93
Alignment explanation
Indices: 69973758--69973929 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69973748 CGCCCATAAG
* *
69973758 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69973823 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
69973851 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69973916 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69973930 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69973926 original size:46 final size:46
Alignment explanation
Indices: 69973751--69973926 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69973741 TGTAACCCGC
* * *
69973751 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
69973797 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
69973847 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69973890 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69973927 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69976621 original size:15 final size:16
Alignment explanation
Indices: 69976601--69976639 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
69976591 TCAAACACGT
69976601 ATGTATGTAAAA-ATA
1 ATGTATGTAAAATATA
*
69976616 ATGTATTTAAAATATA
1 ATGTATGTAAAATATA
69976632 ATGT-TGTA
1 ATGTATGTA
69976640 TCCTAGATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (16 bp):
ATGTATGTAAAATATA
Found at i:69977386 original size:20 final size:20
Alignment explanation
Indices: 69977336--69977389 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
69977326 AATATTATAT
* **
69977336 AAAAATATAAAAAATTTATTA
1 AAAAATAT-AAATATTTAAGA
69977357 AAATAATATAAATATTTAAGA
1 AAA-AATATAAATATTTAAGA
69977378 AAAAATATAAAT
1 AAAAATATAAAT
69977390 TAAATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.31
21 15 0.52
22 5 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (20 bp):
AAAAATATAAATATTTAAGA
Found at i:69983140 original size:43 final size:42
Alignment explanation
Indices: 69983051--69983160 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
69983041 ATTTACGTCT
* * * * *
69983051 AAGAGCATGTCTGGGACATTGGCATCGTATTTGATTTCGTGT
1 AAGACCATGTCTGGGACAGTGGCATCGTATTTGATTACATGC
* * *
69983093 AAGACCCTGTCTGGGATAGTGGCATGGATATTTGATTACATGC
1 AAGACCATGTCTGGGACAGTGGCATCG-TATTTGATTACATGC
*
69983136 AAGACTATGTCTGGGAC-GTTGGCAT
1 AAGACCATGTCTGGGACAG-TGGCAT
69983161 TGTACAAGCT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 23 0.42
43 32 0.58
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (42 bp):
AAGACCATGTCTGGGACAGTGGCATCGTATTTGATTACATGC
Found at i:69990712 original size:42 final size:43
Alignment explanation
Indices: 69990659--69990753 Score: 129
Period size: 42 Copynumber: 2.2 Consensus size: 43
69990649 ATTTATGTGT
* *
69990659 AAGACCATGTCTGGGACATTGGCATCG-TATTTGATTTCATGC
1 AAGACCATGTCTGGGACAGTGGCATCGATATTTGATTACATGC
* * *
69990701 AAGACCTTGTCTGGGATAGTGGCATCGATATTTGATTACATGT
1 AAGACCATGTCTGGGACAGTGGCATCGATATTTGATTACATGC
*
69990744 AAGACTATGT
1 AAGACCATGT
69990754 GACAGCCCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 24 0.53
43 21 0.47
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
AAGACCATGTCTGGGACAGTGGCATCGATATTTGATTACATGC
Found at i:69992534 original size:40 final size:40
Alignment explanation
Indices: 69992440--69992584 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
69992430 TACTCGAATG
* *
69992440 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
69992481 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
69992521 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
69992561 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
69992585 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:70000161 original size:44 final size:43
Alignment explanation
Indices: 70000010--70000174 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
70000000 TGCTCGTACA
* *
70000010 ATGCCAATGTCCTAGACGTGGTCTTACATGT-ATTCAAATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGTAAATCAAA-ATCG
* * *
70000053 ATGCCATTGTCCCAGACAG-GGTCTTACACG-AAATC-AAATACA
1 ATGCCAATGTCCTAGAC-GTGGTCTTACACGTAAATCAAAAT-CG
* *
70000095 ATGCCGATGTCCTAGACATGGTCTTACACGTAAATCTAAAATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGTAAATC-AAAATCG
* * *
70000139 ATGCTAACGTCCTAGACGTGGTCTTACATG-AAATCA
1 ATGCCAATGTCCTAGACGTGGTCTTACACGTAAATCA
70000175 CACATCGGAA
Statistics
Matches: 100, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 29 0.29
43 38 0.38
44 27 0.27
45 4 0.04
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACGTGGTCTTACACGTAAATCAAAATCG
Found at i:70002990 original size:27 final size:27
Alignment explanation
Indices: 70002960--70003049 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
70002950 CAACCAATGG
70002960 AGTCTGTCGAGACACTAAACATGGGGT
1 AGTCTGTCGAGACACTAAACATGGGGT
** * * *
70002987 AGTCCATTGGGACACTAAACATAGGGT
1 AGTCTGTCGAGACACTAAACATGGGGT
* * *
70003014 AGTCTG-CCAGGACACTAAACATGAGAT
1 AGTCTGTCGA-GACACTAAACATGGGGT
70003041 AGTCTGTCG
1 AGTCTGTCG
70003050 GAATAGTAAA
Statistics
Matches: 47, Mismatches: 14, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (27 bp):
AGTCTGTCGAGACACTAAACATGGGGT
Found at i:70003156 original size:69 final size:69
Alignment explanation
Indices: 70003049--70003209 Score: 207
Period size: 69 Copynumber: 2.3 Consensus size: 69
70003039 ATAGTCTGTC
* * *
70003049 GGAATAGTAAACACGAGGATTACGAGGTGAAAGACCATAGCTCGACTATGGCAACCAATAGAGTC
1 GGAA-AGTAAACACGAGGATTACGAGGTGAAAGACCATAGCTCAACAATAGCAACCAATAGAGTC
70003114 TATTA
65 TATTA
* ** * * *
70003119 GGACAGTAAACACGAGGATTGTGAGGTGTAAGTCCATAGCTCAACAATAGCAACCAATGGAGTCT
1 GGAAAGTAAACACGAGGATTACGAGGTGAAAGACCATAGCTCAACAATAGCAACCAATAGAGTCT
*
70003184 GTTA
66 ATTA
70003188 GGAAAGTAAACAC-AGGGATTAC
1 GGAAAGTAAACACGA-GGATTAC
70003210 TATATAGCCC
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
68 1 0.01
69 73 0.95
70 3 0.04
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (69 bp):
GGAAAGTAAACACGAGGATTACGAGGTGAAAGACCATAGCTCAACAATAGCAACCAATAGAGTCT
ATTA
Found at i:70007184 original size:41 final size:41
Alignment explanation
Indices: 70007108--70007187 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
70007098 AATTATGGGC
*
70007108 ACTTAATGTGCAAAATTGAGATAGCTTCGATTATATATTGG
1 ACTTAATGTGCAAAATTGAGATAGCTTCGACTATATATTGG
* * * * *
70007149 ACTTAGTGTGCGAGATTGAGATAGCTTTGGCTATATATT
1 ACTTAATGTGCAAAATTGAGATAGCTTCGACTATATATT
70007188 CACATTGGCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.38
Consensus pattern (41 bp):
ACTTAATGTGCAAAATTGAGATAGCTTCGACTATATATTGG
Found at i:70008686 original size:8 final size:8
Alignment explanation
Indices: 70008675--70008699 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
70008665 TTTAATAAGA
70008675 TATTTTAT
1 TATTTTAT
70008683 TATTTTAT
1 TATTTTAT
70008691 TATTTTAT
1 TATTTTAT
70008699 T
1 T
70008700 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:70011210 original size:10 final size:10
Alignment explanation
Indices: 70011195--70011221 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
70011185 ACACACAAAG
70011195 TAAGCTTTCA
1 TAAGCTTTCA
70011205 TAAGCTTTCA
1 TAAGCTTTCA
70011215 TAAGCTT
1 TAAGCTT
70011222 AGTAAGCTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (10 bp):
TAAGCTTTCA
Found at i:70011560 original size:44 final size:42
Alignment explanation
Indices: 70011512--70011627 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 42
70011502 AAGATTAGCT
70011512 GAAGCTATAATAATTCCGCACACTTAGTGCCATCTCA-ATTAACC
1 GAAGCTATAATAATT-CGCACACTTAGTGCCA-CTCATA-TAACC
*
70011556 GAAGCTAT-TTCAATATCGCACACTTAGTG-C-CTCATATAACC
1 GAAGCTATAAT-AAT-TCGCACACTTAGTGCCACTCATATAACC
*
70011597 GAAGCTA-AATTAACTCGCACACTTAGTGCCA
1 GAAGCTATAA-TAATTCGCACACTTAGTGCCA
70011628 AATACTATTG
Statistics
Matches: 62, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
40 14 0.23
41 19 0.31
42 2 0.03
43 2 0.03
44 24 0.39
45 1 0.02
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (42 bp):
GAAGCTATAATAATTCGCACACTTAGTGCCACTCATATAACC
Found at i:70020386 original size:21 final size:22
Alignment explanation
Indices: 70020361--70020401 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
70020351 TTCATTCATA
70020361 ATTCAGAAATCAAA-ACATAAC
1 ATTCAGAAATCAAAGACATAAC
* *
70020382 ATTCATAAGTCAAAGACATA
1 ATTCAGAAATCAAAGACATA
70020402 CTAAAACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.54, C:0.17, G:0.07, T:0.22
Consensus pattern (22 bp):
ATTCAGAAATCAAAGACATAAC
Found at i:70021194 original size:43 final size:42
Alignment explanation
Indices: 70021136--70021284 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 42
70021126 CAATGCCAAC
*
70021136 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCATT
1 GTCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCA-T
* * *
70021179 GTCCCAGACAG-GGTCTTACACGAAATCAAATA-CAATACCGAT
1 GTCCCAGAC-GTGGTCTTACACGTAATCAAATATCGATGCC-AT
* * *
70021221 GTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAAC
1 GTCCCAGACGTGGTCTTACACGT-AATCA-AATATCGATGCC-AT
70021265 GTCCCAGACGTGGTCTTACA
1 GTCCCAGACGTGGTCTTACA
70021285 TGAAAACACA
Statistics
Matches: 88, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
42 26 0.30
43 34 0.39
44 28 0.32
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCAT
Found at i:70033828 original size:6 final size:6
Alignment explanation
Indices: 70033783--70033854 Score: 58
Period size: 6 Copynumber: 11.7 Consensus size: 6
70033773 ACAATCTGTT
* * * *
70033783 GAAAAA GCAAAA GAATAA GAATAA GAAAAA -AAGAAT GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAA-AAA GAAAAA GAAAAA
70033831 G-AAAA GAAAATCAA GAAAAA GAAA
1 GAAAAA G-AAA--AA GAAAAA GAAA
70033855 GAAAAAAGTG
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
5 7 0.13
6 37 0.69
7 4 0.07
8 3 0.06
9 3 0.06
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.06
Consensus pattern (6 bp):
GAAAAA
Found at i:70033831 original size:36 final size:36
Alignment explanation
Indices: 70033782--70033860 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
70033772 AACAATCTGT
* *
70033782 TGAAAAAGCAAAAGAATAAGAATAA-GAA-AAAAAGAA
1 TGAAAAAGAAAAAGAA-AAGAA-AATCAAGAAAAAGAA
70033818 TGAAAAAGAAAAAGAAAAGAAAATCAAGAAAAAGAA
1 TGAAAAAGAAAAAGAAAAGAAAATCAAGAAAAAGAA
*
70033854 AGAAAAA
1 TGAAAAA
70033861 AGTGAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
34 2 0.05
35 7 0.18
36 29 0.76
ACGTcount: A:0.75, C:0.03, G:0.16, T:0.06
Consensus pattern (36 bp):
TGAAAAAGAAAAAGAAAAGAAAATCAAGAAAAAGAA
Found at i:70033847 original size:30 final size:29
Alignment explanation
Indices: 70033791--70033860 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
70033781 TTGAAAAAGC
* *
70033791 AAAAGAATAAGAATAAGAAAAAAAGAATGA
1 AAAAGAAAAAGAATAAGAAAAAAAGAA-AA
*
70033821 AAAAGAAAAAGAA-AAGAAAATCAAGAAAA
1 AAAAGAAAAAGAATAAGAAAA-AAAGAAAA
70033850 AGAAAGAAAAA
1 A-AAAGAAAAA
70033861 AGTGAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.77, C:0.01, G:0.16, T:0.06
Consensus pattern (29 bp):
AAAAGAAAAAGAATAAGAAAAAAAGAAAA
Found at i:70036965 original size:19 final size:19
Alignment explanation
Indices: 70036926--70036962 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
70036916 TAGTACAACC
70036926 ATTTAATTTGTCTTGAGTT
1 ATTTAATTTGTCTTGAGTT
70036945 ATTTAATTTGTCTT-AGTT
1 ATTTAATTTGTCTTGAGTT
70036963 TATACAGGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.22, C:0.05, G:0.14, T:0.59
Consensus pattern (19 bp):
ATTTAATTTGTCTTGAGTT
Found at i:70039823 original size:47 final size:47
Alignment explanation
Indices: 70039772--70040154 Score: 613
Period size: 47 Copynumber: 8.1 Consensus size: 47
70039762 TTAGGATTTT
70039772 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
70039819 ATGTGATGAGTGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
70039866 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
70039917 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
70039964 ATGTGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
70040011 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
70040058 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
70040105 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
70040152 ATG
1 ATG
70040155 CGAAATGTGT
Statistics
Matches: 315, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 270 0.86
49 2 0.01
51 43 0.14
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:70039921 original size:24 final size:24
Alignment explanation
Indices: 70039893--70039968 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
70039883 CCGTATATAT
70039893 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
70039917 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
70039940 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
70039964 ATGTG
1 ATGTG
70039969 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:70040264 original size:46 final size:46
Alignment explanation
Indices: 70040128--70040264 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
70040118 GAACATGTAT
* *
70040128 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
70040174 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
70040220 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
70040265 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:70040520 original size:37 final size:37
Alignment explanation
Indices: 70040412--70040520 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
70040402 GGAAATATAT
* * *
70040412 TCCGGGTAATACCCGATGACTACGTATGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
70040449 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
70040486 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
70040521 CGTCTGAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:70043636 original size:40 final size:40
Alignment explanation
Indices: 70043581--70043769 Score: 315
Period size: 40 Copynumber: 4.7 Consensus size: 40
70043571 TATTCGAATG
* *
70043581 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
70043621 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
70043661 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
70043701 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
70043741 ATATCCGGGCTAAGACCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
70043770 CGCGAGTTGC
Statistics
Matches: 140, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:70053291 original size:40 final size:40
Alignment explanation
Indices: 70053231--70053394 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
70053221 CGGGATTCAA
* ** *
70053231 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
70053271 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
70053311 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * *
70053351 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
70053391 CCGG
1 CCGG
70053395 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:70053378 original size:80 final size:80
Alignment explanation
Indices: 70053231--70053394 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
70053221 CGGGATTCAA
* * ** * *
70053231 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
70053296 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * *
70053311 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
70053375 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
70053391 CCGG
1 CCGG
70053395 GTATCATTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 68 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:70061721 original size:31 final size:31
Alignment explanation
Indices: 70061680--70061743 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70061670 CCTTTTCATA
*
70061680 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
70061711 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
70061742 TT
1 TT
70061744 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:70061981 original size:24 final size:24
Alignment explanation
Indices: 70061948--70062098 Score: 227
Period size: 24 Copynumber: 6.4 Consensus size: 24
70061938 CTGGAGGCCT
*
70061948 AGCCTCTTTTAATAACT-GGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
70061972 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
70061996 AGCCC-TTTAATAACTGGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
*
70062019 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
70062043 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70062067 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70062090 AGCCCTTTT
1 AGCCCTTTT
70062099 TCACTTCCTC
Statistics
Matches: 117, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
23 54 0.46
24 63 0.54
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:70062098 original size:47 final size:48
Alignment explanation
Indices: 70061948--70062098 Score: 227
Period size: 47 Copynumber: 3.2 Consensus size: 48
70061938 CTGGAGGCCT
* *
70061948 AGCCTCTTTTAATAACT-GGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* *
70061996 AGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
70062043 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
70062090 AGCCCTTTT
1 AGCCCTTTT
70062099 TCACTTCCTC
Statistics
Matches: 95, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
46 10 0.11
47 60 0.63
48 25 0.26
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:70062171 original size:9 final size:9
Alignment explanation
Indices: 70062157--70062233 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
70062147 ATCTCGTGTG
70062157 CATATCATA
1 CATATCATA
*
70062166 CATATCATGTG
1 CATATCA--TA
70062177 CATATCATA
1 CATATCATA
* *
70062186 CATGTCATGTG
1 CATATCA--TA
70062197 CATATCATA
1 CATATCATA
*
70062206 CATATCATGTG
1 CATATCA--TA
70062217 CATATCATA
1 CATATCATA
70062226 CATATCAT
1 CATATCAT
70062234 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:70062176 original size:20 final size:20
Alignment explanation
Indices: 70062153--70062235 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
70062143 GAACATCTCG
70062153 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
70062173 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
70062193 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
70062213 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
70062233 TGT
1 TGT
70062236 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:70062182 original size:11 final size:11
Alignment explanation
Indices: 70062153--70062224 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
70062143 GAACATCTCG
70062153 TGTGCATATCA
1 TGTGCATATCA
*
70062164 --TACATATCA
1 TGTGCATATCA
70062173 TGTGCATATCA
1 TGTGCATATCA
* *
70062184 --TACATGTCA
1 TGTGCATATCA
70062193 TGTGCATATCA
1 TGTGCATATCA
*
70062204 --TACATATCA
1 TGTGCATATCA
70062213 TGTGCATATCA
1 TGTGCATATCA
70062224 T
1 T
70062225 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:70062318 original size:25 final size:25
Alignment explanation
Indices: 70062272--70062319 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
70062262 ATATATAAAC
* * * *
70062272 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
70062297 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
70062320 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:70063579 original size:27 final size:27
Alignment explanation
Indices: 70063559--70063895 Score: 436
Period size: 27 Copynumber: 12.6 Consensus size: 27
70063549 AGGGTATTTT
*
70063559 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70063586 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70063613 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70063640 GGTAATTCTGTAAATCGA-GGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
70063666 -GTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70063692 -GATAATTATGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
70063719 GGTAATTATGTAAATTG-GGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70063745 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
70063772 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
70063799 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
70063826 GGTAATTTTACAAATCGAGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70063852 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
70063879 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
70063896 GGAGTACTTT
Statistics
Matches: 277, Mismatches: 24, Indels: 18
0.87 0.08 0.06
Matches are distributed among these distances:
25 18 0.06
26 62 0.22
27 194 0.70
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:70063792 original size:80 final size:80
Alignment explanation
Indices: 70063560--70063895 Score: 475
Period size: 80 Copynumber: 4.2 Consensus size: 80
70063550 GGGTATTTTA
* * *
70063560 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-AGTAATTCTATA
*
70063625 AATCGAGGGTAAAATG
65 AATCGAGGGTAAAACG
* * *
70063641 GTAATTCTGTAAATCGA-GGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAAG-TAATTCTATA
70063704 AATCGAGGGTAAAACG
65 AATCGAGGGTAAAACG
* * *
70063720 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-AGTAATTCTATA
70063784 AA-CTGAGGGTAAAACG
65 AATC-GAGGGTAAAACG
* **
70063800 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAAAGTAATTCTATAA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAAGTAATTCTATAA
70063865 A-CTGAGGGTAAAACG
66 ATC-GAGGGTAAAACG
70063880 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
70063896 GGAGTACTTT
Statistics
Matches: 233, Mismatches: 16, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
78 1 0.00
79 70 0.30
80 113 0.48
81 49 0.21
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAAGTAATTCTATAA
ATCGAGGGTAAAACG
Found at i:70063912 original size:107 final size:107
Alignment explanation
Indices: 70063560--70063895 Score: 466
Period size: 107 Copynumber: 3.1 Consensus size: 107
70063550 GGGTATTTTA
* * * * *
70063560 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATATA
*
70063625 AATCGAGGGTAAAATGGTAATTCTGTAAATCGA-GGTAAAAC
66 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * *
70063666 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGTAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATATA
* *
70063731 AATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
66 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-C
* *
70063773 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATAT
* *
70063837 AAATCGAGGGTAAAA-AGTAATTCTATAAA-CTGAGGGTAAAAC
65 AAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAAC
70063879 GGTAATTCTGTAAATCG
1 -GTAATTCTGTAAATCG
70063896 GGAGTACTTT
Statistics
Matches: 203, Mismatches: 20, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
105 26 0.13
106 70 0.34
107 98 0.48
108 9 0.04
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (107 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATATA
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:70066760 original size:31 final size:31
Alignment explanation
Indices: 70066719--70066782 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70066709 CCTTTTCATA
*
70066719 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
70066750 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
70066781 TT
1 TT
70066783 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:70067027 original size:24 final size:24
Alignment explanation
Indices: 70066975--70067140 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
70066965 GCTTTATCAT
*
70066975 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
70067000 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
70067024 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
70067047 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
70067071 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
70067095 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
70067118 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
70067141 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:70067051 original size:47 final size:48
Alignment explanation
Indices: 70066974--70067140 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
70066964 TGCTTTATCA
* *
70066974 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
70067023 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
70067070 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
70067117 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
70067141 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:70067075 original size:71 final size:71
Alignment explanation
Indices: 70066975--70067140 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
70066965 GCTTTATCAT
* *
70066975 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
70067039 GCCCTTTA
64 GCCCTTTA
* * *
70067047 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
70067112 CCTTTA
66 CCTTTA
70067118 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
70067141 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:70067212 original size:9 final size:9
Alignment explanation
Indices: 70067198--70067274 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
70067188 ATCTCGTGTG
70067198 CATATCATA
1 CATATCATA
*
70067207 CATATCATGTG
1 CATATCA--TA
70067218 CATATCATA
1 CATATCATA
* *
70067227 CATGTCATGTG
1 CATATCA--TA
70067238 CATATCATA
1 CATATCATA
*
70067247 CATATCATGTG
1 CATATCA--TA
70067258 CATATCATA
1 CATATCATA
70067267 CATATCAT
1 CATATCAT
70067275 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:70067217 original size:20 final size:20
Alignment explanation
Indices: 70067194--70067276 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
70067184 GAACATCTCG
70067194 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
70067214 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
70067234 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
70067254 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
70067274 TGT
1 TGT
70067277 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:70067223 original size:11 final size:11
Alignment explanation
Indices: 70067194--70067265 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
70067184 GAACATCTCG
70067194 TGTGCATATCA
1 TGTGCATATCA
*
70067205 --TACATATCA
1 TGTGCATATCA
70067214 TGTGCATATCA
1 TGTGCATATCA
* *
70067225 --TACATGTCA
1 TGTGCATATCA
70067234 TGTGCATATCA
1 TGTGCATATCA
*
70067245 --TACATATCA
1 TGTGCATATCA
70067254 TGTGCATATCA
1 TGTGCATATCA
70067265 T
1 T
70067266 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:70068616 original size:27 final size:27
Alignment explanation
Indices: 70068596--70068932 Score: 418
Period size: 27 Copynumber: 12.6 Consensus size: 27
70068586 AGGGTATTTT
*
70068596 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70068623 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70068650 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70068677 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70068704 -GTAATTCTGTAAATCGAGGGCAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
70068730 -GATAATTATGTAAATCG-GGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
70068756 GGTAATTATGTAAATTG-GGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70068782 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
70068809 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
70068836 GGTAATT-TGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
70068862 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
70068889 AATAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
70068916 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
70068933 GGAGTACTTT
Statistics
Matches: 275, Mismatches: 27, Indels: 16
0.86 0.08 0.05
Matches are distributed among these distances:
26 98 0.36
27 176 0.64
28 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:70068736 original size:53 final size:54
Alignment explanation
Indices: 70068597--70068932 Score: 425
Period size: 53 Copynumber: 6.3 Consensus size: 54
70068587 GGGTATTTTA
* * *
70068597 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACG
* * *
70068651 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
* *
70068704 GTAATTCTGTAAATCGAGGGCAAAACGATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
* * * **
70068757 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
*
70068810 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATT-TGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
* ** * *
70068863 GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATC-GAGGGTAAAACG
70068917 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
70068933 GGAGTACTTT
Statistics
Matches: 244, Mismatches: 30, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
52 32 0.13
53 118 0.48
54 94 0.39
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACG
Found at i:70068745 original size:80 final size:81
Alignment explanation
Indices: 70068597--70068932 Score: 461
Period size: 80 Copynumber: 4.2 Consensus size: 81
70068587 GGGTATTTTA
* * *
70068597 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
70068662 AA-TCGAGGGTAAAATG
66 AACT-GAGGGTAAAACG
* * *
70068678 GTAATTCTGTAAATCGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGCAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTAT
70068741 AAA-TCG-GGGTAAAACG
65 AAACT-GAGGGTAAAACG
* * * *
70068757 GTAATTATGTAAATTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
70068821 AACTGAGGGTAAAACG
66 AACTGAGGGTAAAACG
* ** *
70068837 GTAATT-TGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACAATAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
70068901 AACTGAGGGTAAAACG
66 AACTGAGGGTAAAACG
70068917 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
70068933 GGAGTACTTT
Statistics
Matches: 230, Mismatches: 18, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
78 9 0.04
79 68 0.30
80 119 0.52
81 34 0.15
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AACTGAGGGTAAAACG
Found at i:70070459 original size:40 final size:40
Alignment explanation
Indices: 70070352--70070515 Score: 152
Period size: 40 Copynumber: 4.1 Consensus size: 40
70070342 CGGGATTCAA
* *
70070352 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAGC
* *** **
70070392 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAGC
**
70070432 CCGGATATAACAACCCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAGC
* * * * * *
70070472 CCAGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACAAGCACAATTGCCTTCGGGTCTTAGC
70070512 CCGG
1 CCGG
70070516 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 95 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAGC
Found at i:70070499 original size:80 final size:80
Alignment explanation
Indices: 70070352--70070515 Score: 186
Period size: 80 Copynumber: 2.0 Consensus size: 80
70070342 CGGGATTCAA
* * * ** * *
70070352 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCAGATATAATAACTAGCACAAATG
* *
70070417 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * *
70070432 CCGGATATAACAACCCGCACGAA-TGCCTTCGGGTCTTAGCCCAGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCAGATATAATAACTAGCACAAAT
70070496 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
70070512 CCGG
1 CCGG
70070516 GTATCATTCA
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
80 67 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCAGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:70083597 original size:13 final size:15
Alignment explanation
Indices: 70083574--70083605 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
70083564 TAAGTAGATT
70083574 CTTTAGAGTT-AAAA
1 CTTTAGAGTTAAAAA
70083588 CTTT-GAGTTAAAAA
1 CTTTAGAGTTAAAAA
70083602 CTTT
1 CTTT
70083606 CATTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (15 bp):
CTTTAGAGTTAAAAA
Found at i:70084128 original size:22 final size:22
Alignment explanation
Indices: 70084103--70084146 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
70084093 AGTTCAGGAG
*
70084103 ATCAAGTTATAACCATTTTAGT
1 ATCAAGTCATAACCATTTTAGT
70084125 ATCAAGTCATAACCATTTTAGT
1 ATCAAGTCATAACCATTTTAGT
70084147 TAAGACTGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (22 bp):
ATCAAGTCATAACCATTTTAGT
Found at i:70084648 original size:82 final size:83
Alignment explanation
Indices: 70084548--70084713 Score: 316
Period size: 83 Copynumber: 2.0 Consensus size: 83
70084538 ACTTTGGGAG
*
70084548 TTTATTTCTTGATGCAAGA-TTTTTTTCTTATGATTTTTAGAAGTAGTTTTCTTATCGATGTTCT
1 TTTATTTCTTGATGCAAGATTTTTTTTCTCATGATTTTTAGAAGTAGTTTTCTTATCGATGTTCT
70084612 TCTAGGAGTCATGGGAAT
66 TCTAGGAGTCATGGGAAT
70084630 TTTATTTCTTGATGCAAGATTTTTTTTCTCATGATTTTTAGAAGTAGTTTTCTTATCGATGTTCT
1 TTTATTTCTTGATGCAAGATTTTTTTTCTCATGATTTTTAGAAGTAGTTTTCTTATCGATGTTCT
70084695 TCTAGGAGTCATGGGAAT
66 TCTAGGAGTCATGGGAAT
70084713 T
1 T
70084714 CATTCTTCAC
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
82 19 0.23
83 63 0.77
ACGTcount: A:0.22, C:0.10, G:0.18, T:0.50
Consensus pattern (83 bp):
TTTATTTCTTGATGCAAGATTTTTTTTCTCATGATTTTTAGAAGTAGTTTTCTTATCGATGTTCT
TCTAGGAGTCATGGGAAT
Found at i:70087104 original size:52 final size:53
Alignment explanation
Indices: 70087048--70087162 Score: 171
Period size: 52 Copynumber: 2.2 Consensus size: 53
70087038 GGGAAATTTC
*
70087048 TCACTTAGCACCA-TGCCATGGACTTATTTCACTTAAACGCCGTAGTCTTATT
1 TCACTTAGCACCATTGCCATGGACTTATTTCACTTAAACGCCATAGTCTTATT
* * *
70087100 TCACTTAGCA-CATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACCATTGCCATGGACTTATTTCACTTAAACGCCATAGTCTTATT
*
70087152 TCCCTTAGCAC
1 TCACTTAGCAC
70087163 AATGTCATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
51 2 0.04
52 54 0.96
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (53 bp):
TCACTTAGCACCATTGCCATGGACTTATTTCACTTAAACGCCATAGTCTTATT
Found at i:70087134 original size:28 final size:27
Alignment explanation
Indices: 70087048--70087163 Score: 118
Period size: 24 Copynumber: 4.4 Consensus size: 27
70087038 GGGAAATTTC
70087048 TCACTTAGCACCATGCCATGGACTTATT
1 TCACTTAGCA-CATGCCATGGACTTATT
* * * *
70087076 TCACTTA--A-ACGCCGTAGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
70087100 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
70087128 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
*
70087152 TCCCTTAGCACA
1 TCACTTAGCACA
70087164 ATGTCATATC
Statistics
Matches: 71, Mismatches: 10, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
24 40 0.56
25 1 0.01
26 2 0.03
27 2 0.03
28 26 0.37
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:70092915 original size:36 final size:37
Alignment explanation
Indices: 70092847--70092932 Score: 106
Period size: 36 Copynumber: 2.4 Consensus size: 37
70092837 ATTCTGGCTC
*
70092847 ATCTTCTTTTCTTTCTTCAATCTCTTTCTCTTTTTCA
1 ATCTTCTTTTCTTTCATCAATCTCTTTCTCTTTTTCA
* * * *
70092884 ATCTTCTTTTC-TTGATCAATTTCTTTTTCTTTTTCG
1 ATCTTCTTTTCTTTCATCAATCTCTTTCTCTTTTTCA
70092920 AT-TTCTTTT-TTTC
1 ATCTTCTTTTCTTTC
70092933 TTTTTCTCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
35 9 0.21
36 22 0.52
37 11 0.26
ACGTcount: A:0.10, C:0.22, G:0.02, T:0.65
Consensus pattern (37 bp):
ATCTTCTTTTCTTTCATCAATCTCTTTCTCTTTTTCA
Found at i:70092929 original size:18 final size:18
Alignment explanation
Indices: 70092853--70092929 Score: 84
Period size: 18 Copynumber: 4.2 Consensus size: 18
70092843 GCTCATCTTC
*
70092853 TTTTCTTTCTTCAATCTCT
1 TTTTCTTT-TTCAATTTCT
*
70092872 TTCTCTTTTTCAATCTTC-
1 TTTTCTTTTTCAAT-TTCT
**
70092890 TTTTCTTGATCAATTTCT
1 TTTTCTTTTTCAATTTCT
*
70092908 TTTTCTTTTTCGATTTCT
1 TTTTCTTTTTCAATTTCT
70092926 TTTT
1 TTTT
70092930 TTCTTTTTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
17 3 0.06
18 36 0.75
19 9 0.19
ACGTcount: A:0.10, C:0.21, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTCTTTTTCAATTTCT
Found at i:70092945 original size:20 final size:21
Alignment explanation
Indices: 70092907--70092956 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
70092897 GATCAATTTC
*
70092907 TTTTTCTTTTTCGATTTCT-T
1 TTTTTCTTTTTCCATTTCTCT
70092927 TTTTTCTTTTTCTCA-TTCTCT
1 TTTTTCTTTTTC-CATTTCTCT
*
70092948 TTTTGCTTT
1 TTTTTCTTT
70092957 CTTTCACACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.04, C:0.18, G:0.04, T:0.74
Consensus pattern (21 bp):
TTTTTCTTTTTCCATTTCTCT
Found at i:70092994 original size:21 final size:20
Alignment explanation
Indices: 70092922--70092994 Score: 55
Period size: 21 Copynumber: 3.8 Consensus size: 20
70092912 CTTTTTCGAT
70092922 TTCTTTTTTTCTTT-TTCTCA
1 TTCTTTTTTTCTTTCTT-TCA
*
70092942 TTCTCTTTTTGCTTTCTTTCA
1 TTCT-TTTTTTCTTTCTTTCA
** * *
70092963 CACTCTTTTTCTTTC-AT--
1 TTCTTTTTTTCTTTCTTTCA
70092980 TTCTTTTTTTCTTTC
1 TTCTTTTTTTCTTTC
70092995 AAATTTTTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
17 12 0.29
19 1 0.02
20 13 0.31
21 14 0.33
22 2 0.05
ACGTcount: A:0.05, C:0.23, G:0.01, T:0.70
Consensus pattern (20 bp):
TTCTTTTTTTCTTTCTTTCA
Done.