Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 238 of 345
Found at i:70095088 original size:29 final size:27
Alignment explanation
Indices: 70095054--70095156 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
70095044 TACTCAATCA
*
70095054 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
70095083 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
70095112 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
70095141 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70095157 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:70102886 original size:29 final size:27
Alignment explanation
Indices: 70102852--70102954 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
70102842 TACTCAATCA
*
70102852 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
70102881 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
70102910 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
70102939 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70102955 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:70104918 original size:12 final size:11
Alignment explanation
Indices: 70104897--70104928 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
70104887 TTTCTTTTCA
70104897 CAAATTTTTTT
1 CAAATTTTTTT
70104908 CAAATTTTTTT
1 CAAATTTTTTT
*
70104919 CGAATTTTTT
1 CAAATTTTTT
70104929 GCTAAAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.25, C:0.09, G:0.03, T:0.62
Consensus pattern (11 bp):
CAAATTTTTTT
Found at i:70110596 original size:44 final size:44
Alignment explanation
Indices: 70110531--70110614 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
70110521 TTGATAACTC
* * *
70110531 AAAGTCCATGGTTGTACCATGGCAATTAATGAAGAATTGATGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
* *
70110575 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
70110615 CGGTTAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
Found at i:70110669 original size:47 final size:49
Alignment explanation
Indices: 70110618--70110737 Score: 140
Period size: 47 Copynumber: 2.5 Consensus size: 49
70110608 GAATTGACGG
*
70110618 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGCA-T-TGA
1 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGCACTAAGA
** * * *
70110665 TTAAGGACT-CCATGTAAGACCACATTAAGATATGGCATTGGCACTAAGA
1 TTAAGGA-TACCATGTAAGACCATGTCAAGACATGGCATCGGCACTAAGA
*
70110714 -CAAGGATACCATGTAAGACCATGT
1 TTAAGGATACCATGTAAGACCATGT
70110738 TTGGAACATG
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
47 37 0.62
48 21 0.35
49 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (49 bp):
TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGCACTAAGA
Found at i:70110886 original size:55 final size:54
Alignment explanation
Indices: 70110769--70110954 Score: 214
Period size: 55 Copynumber: 3.4 Consensus size: 54
70110759 AACAAGGATA
* * * *
70110769 GTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATACCAT
** * *
70110823 GTAAGACCATTTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGG-TCCCAT
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-CAAGGATACCAT
* * * *
70110878 GTAAGACCATGCCAAGGCATGACATTGGTGAGTTC-ATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATACCAT
**
70110931 GTAAGACCATGTTAAGACATGGCA
1 GTAAGACCATGCCAAGACATGGCA
70110955 ATGGTAAGTT
Statistics
Matches: 109, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 4 0.04
53 30 0.28
54 31 0.28
55 40 0.37
56 4 0.04
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATACCAT
Found at i:70133135 original size:208 final size:208
Alignment explanation
Indices: 70132889--70133306 Score: 827
Period size: 208 Copynumber: 2.0 Consensus size: 208
70132879 TCTTCGGGAG
70132889 GCTCGATCACTCAAGGAACACCCATCCGGGCTAGATCCTTTTTATATTTGAGATCAACGGATTAC
1 GCTCGATCACTCAAGGAACACCCATCCGGGCTAGATCCTTTTTATATTTGAGATCAACGGATTAC
70132954 CCGTCTAGGCTAAATCCTTTCTGAAACACATGCAGGATCTCAAGTCATGTAAGCCATGGTTTATC
66 CCGTCTAGGCTAAATCCTTTCTGAAACACATGCAGGATCTCAAGTCATGTAAGCCATGGTTTATC
70133019 CATCAAATTCCCTTTTCAACCTCAACCAGGACATTTATCAACATGTCATTATTAAGGACGTCTTT
131 CATCAAATTCCCTTTTCAACCTCAACCAGGACATTTATCAACATGTCATTATTAAGGACGTCTTT
70133084 CGTAGATTTTCAT
196 CGTAGATTTTCAT
70133097 GCTCGATCACTCAAGGAACACCCATCCGGGCTAGATCCTTTTTATATTTGAGATCAACGGATTAC
1 GCTCGATCACTCAAGGAACACCCATCCGGGCTAGATCCTTTTTATATTTGAGATCAACGGATTAC
70133162 CCGTCTAGGCTAAATCCTTTCTGAAACACATGCAGGATCTCAAGTCATGTAAGCCATGGTTTATC
66 CCGTCTAGGCTAAATCCTTTCTGAAACACATGCAGGATCTCAAGTCATGTAAGCCATGGTTTATC
*
70133227 CATCAAATTCCCTTTTCAACCTCAACCGGGACATTTATCAACATGTCATTATTAAGGACGTCTTT
131 CATCAAATTCCCTTTTCAACCTCAACCAGGACATTTATCAACATGTCATTATTAAGGACGTCTTT
70133292 CGTAGATTTTCAT
196 CGTAGATTTTCAT
70133305 GC
1 GC
70133307 CATCATCAAA
Statistics
Matches: 209, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
208 209 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (208 bp):
GCTCGATCACTCAAGGAACACCCATCCGGGCTAGATCCTTTTTATATTTGAGATCAACGGATTAC
CCGTCTAGGCTAAATCCTTTCTGAAACACATGCAGGATCTCAAGTCATGTAAGCCATGGTTTATC
CATCAAATTCCCTTTTCAACCTCAACCAGGACATTTATCAACATGTCATTATTAAGGACGTCTTT
CGTAGATTTTCAT
Found at i:70136658 original size:29 final size:30
Alignment explanation
Indices: 70136612--70136676 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 30
70136602 ATTAAATCCG
70136612 AATTAAATCAACAATAA-TAACAACAAAAAA
1 AATT-AATCAACAATAATTAACAACAAAAAA
* * * * *
70136642 AATTAATTAACATTAATTTATAACAAAAAG
1 AATTAATCAACAATAATTAACAACAAAAAA
70136672 AATTA
1 AATTA
70136677 CCTTTTCTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.26
Consensus pattern (30 bp):
AATTAATCAACAATAATTAACAACAAAAAA
Found at i:70140695 original size:15 final size:16
Alignment explanation
Indices: 70140675--70140713 Score: 64
Period size: 14 Copynumber: 2.6 Consensus size: 16
70140665 TGAAAATCTA
70140675 ATTTTTTATAA-TTTT
1 ATTTTTTATAATTTTT
70140690 A-TTTTTATAATTTTT
1 ATTTTTTATAATTTTT
70140705 ATTTTTTAT
1 ATTTTTTAT
70140714 TCTTCATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.41
15 6 0.27
16 7 0.32
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTTTTATAATTTTT
Found at i:70140696 original size:14 final size:15
Alignment explanation
Indices: 70140677--70140710 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
70140667 AAAATCTAAT
70140677 TTTTTATAA-TTTTA
1 TTTTTATAATTTTTA
70140691 TTTTTATAATTTTTA
1 TTTTTATAATTTTTA
70140706 TTTTT
1 TTTTT
70140711 TATTCTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTATAATTTTTA
Found at i:70140724 original size:22 final size:23
Alignment explanation
Indices: 70140677--70140721 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
70140667 AAAATCTAAT
*
70140677 TTTTTATAATTTTATTTTTATAA
1 TTTTTATAATTTTATTTTCATAA
*
70140700 TTTTTAT-TTTTTATTCTTCATA
1 TTTTTATAATTTTATT-TTCATA
70140722 TTTCAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTTTATAATTTTATTTTCATAA
Found at i:70142549 original size:2 final size:2
Alignment explanation
Indices: 70142544--70142568 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
70142534 CTAAATATGG
70142544 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
70142569 TCAAAATGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70148282 original size:16 final size:16
Alignment explanation
Indices: 70148261--70148291 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70148251 GATATTTTAA
70148261 TATATTATATTAATAT
1 TATATTATATTAATAT
*
70148277 TATATTATGTTAATA
1 TATATTATATTAATA
70148292 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:70163023 original size:73 final size:73
Alignment explanation
Indices: 70162904--70163055 Score: 304
Period size: 73 Copynumber: 2.1 Consensus size: 73
70162894 TTTTAGGGCA
70162904 TTGAGTAAGATTAAATTTGTCTCCTTTAGCAACAGGGGTGTTACTTGGTCTACAACCTAGCATGC
1 TTGAGTAAGATTAAATTTGTCTCCTTTAGCAACAGGGGTGTTACTTGGTCTACAACCTAGCATGC
70162969 CAAGCCTT
66 CAAGCCTT
70162977 TTGAGTAAGATTAAATTTGTCTCCTTTAGCAACAGGGGTGTTACTTGGTCTACAACCTAGCATGC
1 TTGAGTAAGATTAAATTTGTCTCCTTTAGCAACAGGGGTGTTACTTGGTCTACAACCTAGCATGC
70163042 CAAGCCTT
66 CAAGCCTT
70163050 TTGAGT
1 TTGAGT
70163056 GTTTTATTCA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 79 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (73 bp):
TTGAGTAAGATTAAATTTGTCTCCTTTAGCAACAGGGGTGTTACTTGGTCTACAACCTAGCATGC
CAAGCCTT
Found at i:70164179 original size:24 final size:24
Alignment explanation
Indices: 70164152--70164249 Score: 135
Period size: 24 Copynumber: 4.0 Consensus size: 24
70164142 AAGGCTGTCA
*
70164152 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGAAGCTGATAAG
*
70164176 GGAGAGGATTTAGAAGCTGATAAG
1 GGAGAAGATTTAGAAGCTGATAAG
* *
70164200 GGAGAGGATTTA-AGAGCTGATAAA
1 GGAGAAGATTTAGA-AGCTGATAAG
70164224 GGAGAAGATTTAGAAGCTGATCAAG
1 GGAGAAGATTTAGAAGCTGAT-AAG
70164249 G
1 G
70164250 AGTAGGAGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
23 1 0.02
24 61 0.92
25 4 0.06
ACGTcount: A:0.39, C:0.05, G:0.36, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGAAGCTGATAAG
Found at i:70164228 original size:48 final size:49
Alignment explanation
Indices: 70164152--70164249 Score: 153
Period size: 48 Copynumber: 2.0 Consensus size: 49
70164142 AAGGCTGTCA
* * *
70164152 GGAGAAGATTTAGGAGCTGATAAGGGAGAGGATTTAGAAGCTGAT-AAG
1 GGAGAAGATTTAAGAGCTGATAAAGGAGAAGATTTAGAAGCTGATCAAG
*
70164200 GGAGAGGATTTAAGAGCTGATAAAGGAGAAGATTTAGAAGCTGATCAAG
1 GGAGAAGATTTAAGAGCTGATAAAGGAGAAGATTTAGAAGCTGATCAAG
70164249 G
1 G
70164250 AGTAGGAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 41 0.91
49 4 0.09
ACGTcount: A:0.39, C:0.05, G:0.36, T:0.20
Consensus pattern (49 bp):
GGAGAAGATTTAAGAGCTGATAAAGGAGAAGATTTAGAAGCTGATCAAG
Found at i:70165106 original size:16 final size:18
Alignment explanation
Indices: 70165077--70165116 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
70165067 AGTTCGTTTC
70165077 GGTAGTAGATTAA-TGT-
1 GGTAGTAGATTAATTGTA
70165093 GGTAGTA-ATATAATTGTA
1 GGTAGTAGAT-TAATTGTA
70165111 GGTAGT
1 GGTAGT
70165117 TCATGCGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.10
16 10 0.48
17 3 0.14
18 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.38
Consensus pattern (18 bp):
GGTAGTAGATTAATTGTA
Found at i:70165890 original size:33 final size:34
Alignment explanation
Indices: 70165813--70165893 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
70165803 TATGGGTTGT
*
70165813 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
70165847 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
70165880 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
70165894 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:70165898 original size:32 final size:31
Alignment explanation
Indices: 70165813--70165905 Score: 78
Period size: 32 Copynumber: 2.8 Consensus size: 31
70165803 TATGGGTTGT
*
70165813 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCTAAGGCCCAGTTC
* * * **
70165847 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTAAGGCCCAGT-TC
*
70165880 ACTGTTATCTGAATGGGCTTAGGCCC
1 ACTGTTATCTGAATGGGCTAAGGCCC
70165906 GATGGGCTTG
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
32 25 0.54
33 10 0.22
34 9 0.20
35 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTAAGGCCCAGTTC
Found at i:70173677 original size:39 final size:40
Alignment explanation
Indices: 70173577--70173758 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
70173567 TCGAATGATG
* * *
70173577 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
70173617 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
70173657 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
70173695 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
70173736 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70173759 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:70173722 original size:78 final size:80
Alignment explanation
Indices: 70173577--70173758 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
70173567 TCGAATGATG
* * * *
70173577 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
70173642 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
70173657 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
70173719 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
70173736 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70173759 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:70175279 original size:24 final size:25
Alignment explanation
Indices: 70175252--70175349 Score: 157
Period size: 24 Copynumber: 4.0 Consensus size: 25
70175242 AAGGCTGTCA
70175252 GGAGAAGATTTAGGAGCTGAT-AAG
1 GGAGAAGATTTAGGAGCTGATCAAG
*
70175276 GGAGAGGATTTAGGAGCTGAT-AAG
1 GGAGAAGATTTAGGAGCTGATCAAG
*
70175300 GGAGAGGATTTAGGAGCTGATCAA-
1 GGAGAAGATTTAGGAGCTGATCAAG
70175324 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGATCAAG
70175349 G
1 G
70175350 AGCAGGAGTT
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
24 67 0.96
25 3 0.04
ACGTcount: A:0.35, C:0.06, G:0.39, T:0.20
Consensus pattern (25 bp):
GGAGAAGATTTAGGAGCTGATCAAG
Found at i:70177052 original size:32 final size:31
Alignment explanation
Indices: 70176967--70177059 Score: 78
Period size: 32 Copynumber: 2.8 Consensus size: 31
70176957 TATGGGCCGT
*
70176967 ACTGTTATCTGAATAAGTGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT--G-GGCTAAGGCCCAGTTC
* * * **
70177001 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTAAGGCCCAGT-TC
*
70177034 ACTGTTATCTGAATGGGCTTAGGCCC
1 ACTGTTATCTGAATGGGCTAAGGCCC
70177060 GATGGGCTTG
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
32 24 0.52
33 11 0.24
34 9 0.20
35 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTAAGGCCCAGTTC
Found at i:70177123 original size:34 final size:34
Alignment explanation
Indices: 70177080--70177147 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
70177070 AGCTGACTTG
70177080 GGCTTTGAATGGGTTTTCCTTACACACTGAGTTT
1 GGCTTTGAATGGGTTTTCCTTACACACTGAGTTT
70177114 GGCTTTGAATGGGTTTTCCTTACACACTGAGTTT
1 GGCTTTGAATGGGTTTTCCTTACACACTGAGTTT
70177148 CCAAACTCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.41
Consensus pattern (34 bp):
GGCTTTGAATGGGTTTTCCTTACACACTGAGTTT
Found at i:70179325 original size:30 final size:29
Alignment explanation
Indices: 70179231--70179332 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
70179221 TATAGTGAAT
* * *
70179231 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
70179260 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
70179288 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
70179318 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
70179333 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:70187208 original size:30 final size:29
Alignment explanation
Indices: 70187114--70187215 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
70187104 TATAGTGAAT
* * *
70187114 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
70187143 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
70187171 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
70187201 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
70187216 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:70200911 original size:43 final size:42
Alignment explanation
Indices: 70200845--70200965 Score: 111
Period size: 42 Copynumber: 2.8 Consensus size: 42
70200835 AACAAGTACA
* * * *
70200845 ATGCCGACGTCCCAGAC-GTGGTCTTACATGTAATTCA-ATATCG
1 ATGCCGATGTCCCAAACAG-GGTCTTACACG-AAATCAGATA-CG
**
70200888 ATGCCTCTGTCCCAAACAGGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAAACAGGGTCTTACACGAAATCAGATACG
* * *
70200930 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATC
1 ATGCCGATGTCCCAAACAGGGTCTTACACG-AAATC
70200966 TCAATCGAGG
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 32 0.50
43 31 0.48
44 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGCCGATGTCCCAAACAGGGTCTTACACGAAATCAGATACG
Found at i:70200953 original size:42 final size:42
Alignment explanation
Indices: 70200845--70201002 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
70200835 AACAAGTACA
* * * *
70200845 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCAATA-CG
** * *
70200888 ATGCCTCTGTCCCAAACAGGGTCTTACACG-AAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCA-ATACG
*
70200930 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAAT-CG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAA--TCAATACG
* *
70200973 AGGCCTG-TGTCCCAGACATGGTCTCACACG
1 ATGCC-GATGTCCCAGACATGGTCTTACACG
70201003 ATGTCTCAAA
Statistics
Matches: 94, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
42 32 0.34
43 56 0.60
44 3 0.03
45 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCAATACG
Found at i:70200996 original size:85 final size:85
Alignment explanation
Indices: 70200845--70201003 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
70200835 AACAAGTACA
* * *
70200845 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAAACAGGGT
1 ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGAGGCCTCTGTCCCAAACAGGGT
*
70200910 CTTACACGAAATCAGATACG
66 CTCACACGAAATCAGATACG
* * * * *
70200930 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACATG
1 ATGCCGACGTCCCAGACATGGTCTTACACGT-AAT-TCAATATCGAGGCCTCTGTCCCAAACAGG
70200993 GTCTCACACGA
64 GTCTCACACGA
70201004 TGTCTCAAAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 57 0.90
86 4 0.06
87 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGAGGCCTCTGTCCCAAACAGGGT
CTCACACGAAATCAGATACG
Found at i:70203106 original size:21 final size:21
Alignment explanation
Indices: 70203059--70203107 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
70203049 AGAGGGGAGT
* * *
70203059 CCACAACGAGGTTGTTCACAT
1 CCACAACGAGCTCGTTCACAA
* *
70203080 CTACAACGAGCTCGTTTACAA
1 CCACAACGAGCTCGTTCACAA
70203101 CCACAAC
1 CCACAAC
70203108 AAGGACGTTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.33, G:0.14, T:0.20
Consensus pattern (21 bp):
CCACAACGAGCTCGTTCACAA
Found at i:70204244 original size:34 final size:34
Alignment explanation
Indices: 70204198--70204271 Score: 130
Period size: 34 Copynumber: 2.1 Consensus size: 34
70204188 CTTCTTGTGG
*
70204198 TAACAAGGAGTTTGAAAATTCATGTCTCGGAAGA
1 TAACAAGAAGTTTGAAAATTCATGTCTCGGAAGA
70204232 TAACAAGAAGTTTGAAAATTCATGTCTCGGAAGA
1 TAACAAGAAGTTTGAAAATTCATGTCTCGGAAGA
70204266 TGAACA
1 T-AACA
70204272 GCAACGAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 34 0.89
35 4 0.11
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.26
Consensus pattern (34 bp):
TAACAAGAAGTTTGAAAATTCATGTCTCGGAAGA
Found at i:70215505 original size:40 final size:40
Alignment explanation
Indices: 70215450--70215667 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
70215440 CGGATGATAA
* *
70215450 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
70215490 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70215530 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70215570 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70215610 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
70215650 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70215668 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 150 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70217687 original size:43 final size:43
Alignment explanation
Indices: 70217626--70217921 Score: 450
Period size: 43 Copynumber: 6.9 Consensus size: 43
70217616 ACATATCATT
* * *
70217626 TCACCGGCATTACGCTTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
70217669 TCACCGGCACGAAGCTTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
70217712 TCACCGGCATGAAGCCTGCTAAGCACGAAGGCCCAAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
70217755 TCACTGGCATGAAGCCTGCTAGGCACGAAGGCCTGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * * *
70217798 TCACCGGTAAGAAGCCTGCTAGGCACGACGGCCCAAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
70217841 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
70217884 TCACCGGCATGAAGCCTGCAAGGCACGAA-GCCCGAATA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATA
70217922 TAATACCAGC
Statistics
Matches: 230, Mismatches: 23, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
42 9 0.04
43 221 0.96
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.12
Consensus pattern (43 bp):
TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:70217963 original size:38 final size:38
Alignment explanation
Indices: 70217914--70218037 Score: 122
Period size: 38 Copynumber: 3.2 Consensus size: 38
70217904 AGGCACGAAG
* * * *
70217914 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * * *
70217952 CCCGGGTATAATTCCAGCCCGAAGACTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** * *
70217990 CCCGGATATTTTGCCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
70218029 GCCCGGATA
1 -CCCGGATA
70218038 CACATCAAAT
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
38 56 0.81
39 5 0.07
40 8 0.12
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:70219997 original size:42 final size:41
Alignment explanation
Indices: 70219917--70220066 Score: 162
Period size: 41 Copynumber: 3.6 Consensus size: 41
70219907 GAGCTTGGTC
70219917 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
70219958 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
70220000 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
70220041 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
70220067 GAGTCGGACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:70220049 original size:41 final size:40
Alignment explanation
Indices: 70219897--70220066 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
70219887 GCTAATCGGG
*
70219897 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
70219938 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
70219981 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
70220021 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
70220062 G-CTAA
1 GTCTAA
70220067 GAGTCGGACT
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 50 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:70227916 original size:42 final size:42
Alignment explanation
Indices: 70227839--70227985 Score: 139
Period size: 41 Copynumber: 3.6 Consensus size: 42
70227829 GCTTGGTCTA
*
70227839 GAAGGGCTTTT-GAGCCAGTGCTAATAACCGAACTTAGTTTC
1 GAAGGGCTTTTCGAGCCAGTGCTAATAACCGAACTTAGTTCC
* *
70227880 GAAGGGCTTTTCAGAGCCAGTG-TCATAACCGGACTTAGTTCC
1 GAAGGGCTTTTC-GAGCCAGTGCTAATAACCGAACTTAGTTCC
* * *
70227922 GAAGGGC-CTTCGAGCCAGTAGTCTAAT--CCGAGCTT-GGTCTC
1 GAAGGGCTTTTCGAGCCAGT-G-CTAATAACCGAACTTAGTTC-C
*
70227963 GAA-GGCTTTT-GAGCCGGTGCTAA
1 GAAGGGCTTTTCGAGCCAGTGCTAA
70227986 GAGTCGGACT
Statistics
Matches: 89, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
38 4 0.04
39 1 0.01
40 21 0.24
41 27 0.30
42 24 0.27
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (42 bp):
GAAGGGCTTTTCGAGCCAGTGCTAATAACCGAACTTAGTTCC
Found at i:70233711 original size:2 final size:2
Alignment explanation
Indices: 70233704--70233728 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
70233694 TGACCATAAA
70233704 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
70233729 CCAACATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:70234800 original size:43 final size:43
Alignment explanation
Indices: 70234752--70234905 Score: 133
Period size: 43 Copynumber: 3.6 Consensus size: 43
70234742 GTCCCTGACG
*
70234752 TGGTCTTACATGTAATCACATATCGATGCC-ACTGTCCTAAACA
1 TGGTCTTACACGTAATCACATATCGATGCCAACTGTCC-AAACA
* * * *
70234795 AGGTCTT--ACGTGAATCAAATA-CGATGCCGA-TGTTCCAGACA
1 TGGTCTTACACGT-AATCACATATCGATGCCAACTG-TCCAAACA
* * *
70234836 TGGTCTTACACGTAAATCACAAATCGATACCAAC-GTCGCAGAA-G
1 TGGTCTTACACGT-AATCACATATCGATGCCAACTGTC-CA-AACA
70234880 TGGTCTTACACGTAATCACATATCGA
1 TGGTCTTACACGTAATCACATATCGA
70234906 AATCCTATGT
Statistics
Matches: 89, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
41 22 0.25
42 12 0.13
43 31 0.35
44 23 0.26
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGTAATCACATATCGATGCCAACTGTCCAAACA
Found at i:70237720 original size:27 final size:27
Alignment explanation
Indices: 70237690--70237753 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
70237680 ATGTTTTATT
*
70237690 TTAATGCAT-GCATTTAATATGTCTTAG
1 TTAATACATAGCA-TTAATATGTCTTAG
* *
70237717 TTAATACATATCATTAATTTGTCTTAG
1 TTAATACATAGCATTAATATGTCTTAG
*
70237744 CTTATTACAT
1 -TTAATACAT
70237754 GATTTTAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 21 0.68
28 10 0.32
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.47
Consensus pattern (27 bp):
TTAATACATAGCATTAATATGTCTTAG
Found at i:70237761 original size:28 final size:27
Alignment explanation
Indices: 70237702--70237761 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
70237692 AATGCATGCA
70237702 TTTAATATGTCTTAGTTAATACATATC
1 TTTAATATGTCTTAGTTAATACATATC
* * *
70237729 ATTAATTTGTCTTAGCTTATTACATGAT-
1 TTTAATATGTCTTAG-TTAATACAT-ATC
70237757 TTTAA
1 TTTAA
70237762 CGTGTTTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
27 13 0.48
28 12 0.44
29 2 0.07
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.50
Consensus pattern (27 bp):
TTTAATATGTCTTAGTTAATACATATC
Found at i:70241040 original size:25 final size:24
Alignment explanation
Indices: 70241012--70241071 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 24
70241002 TCTGTGGAAC
70241012 AAATGAGAGAAAAAGAAAAGA-GTAA
1 AAATGAGAGAAAAAG-AAAGATG-AA
* *
70241037 AAATGTGAAGGAAAAGAAAGATGAA
1 AAATGAG-AGAAAAAGAAAGATGAA
70241062 AAATCGAGAG
1 AAAT-GAGAG
70241072 GGAAGATCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
25 19 0.66
26 10 0.34
ACGTcount: A:0.62, C:0.02, G:0.27, T:0.10
Consensus pattern (24 bp):
AAATGAGAGAAAAAGAAAGATGAA
Found at i:70242754 original size:28 final size:28
Alignment explanation
Indices: 70242694--70242766 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
70242684 TAATGCATGC
70242694 ATTTAATATGTCTTAG-TTAATACATAT
1 ATTTAATATGTCTTAGCTTAATACATAT
* * *
70242721 AATTAATTTGTCTTAGCTTATTACATA-
1 ATTTAATATGTCTTAGCTTAATACATAT
* *
70242748 ATTTTAATGTGTTTTAGCT
1 A-TTTAATATGTCTTAGCT
70242767 CCAACCGAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 15 0.39
28 23 0.61
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.51
Consensus pattern (28 bp):
ATTTAATATGTCTTAGCTTAATACATAT
Found at i:70252371 original size:27 final size:26
Alignment explanation
Indices: 70252315--70252371 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
70252305 CAACCTTAAC
* *
70252315 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTGCA
* *
70252341 CCTAGGGGTAAATCTGTAAATTTTTCA
1 CCTAGGGGTAAATCAGT-AATTTTGCA
70252368 CCTA
1 CCTA
70252372 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTGCA
Found at i:70253630 original size:15 final size:16
Alignment explanation
Indices: 70253589--70253637 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
70253579 GGCTATGGGG
70253589 GAAAAGAAGAAGAGAAA
1 GAAAAGAAGAAGA-AAA
* *
70253606 GTAGATGAAG-AGAAAA
1 G-AAAAGAAGAAGAAAA
70253622 GAAAAGAAGAAGAAAA
1 GAAAAGAAGAAGAAAA
70253638 AACTGAATCC
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
15 6 0.23
16 10 0.38
17 4 0.15
18 6 0.23
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (16 bp):
GAAAAGAAGAAGAAAA
Found at i:70254592 original size:27 final size:25
Alignment explanation
Indices: 70254562--70254627 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
70254552 ATTATTTTCC
*
70254562 TATCTAATAATAATAATTTTATAAATA
1 TATCTAATAATAA-AAATTTA-AAATA
*
70254589 TATCTAATCATAAAAATTTAAAATA
1 TATCTAATAATAAAAATTTAAAATA
*
70254614 T-CCGTAATAATAAA
1 TATC-TAATAATAAA
70254628 TACAGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 15 0.44
26 6 0.18
27 12 0.35
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.38
Consensus pattern (25 bp):
TATCTAATAATAAAAATTTAAAATA
Found at i:70257016 original size:26 final size:26
Alignment explanation
Indices: 70256987--70257037 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
70256977 CAACCTTAAC
* * *
70256987 CCTAGGGGTATATCAGTAATTTTTCT
1 CCTAGAGGTAAATCAGTAAATTTTCT
*
70257013 CCTAGAGGTAAATCTGTAAATTTTC
1 CCTAGAGGTAAATCAGTAAATTTTC
70257038 CACCTATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (26 bp):
CCTAGAGGTAAATCAGTAAATTTTCT
Found at i:70257043 original size:27 final size:26
Alignment explanation
Indices: 70256987--70257043 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
70256977 CAACCTTAAC
* * * *
70256987 CCTAGGGGTATATCAGTAATTTTTCT
1 CCTAGAGGTAAATCAGTAATTTTCCA
*
70257013 CCTAGAGGTAAATCTGTAAATTTTCCA
1 CCTAGAGGTAAATCAGT-AATTTTCCA
70257040 CCTA
1 CCTA
70257044 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (26 bp):
CCTAGAGGTAAATCAGTAATTTTCCA
Found at i:70261767 original size:5 final size:5
Alignment explanation
Indices: 70261757--70261788 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
70261747 GTAGATGAAG
70261757 AGAAA AGAAA AGAAA AGAAA AGAAGA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAA-A AGAAA A
70261789 AACTGAATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:70261775 original size:15 final size:16
Alignment explanation
Indices: 70261738--70261788 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
70261728 GGGAAAGCAG
* *
70261738 AAAGAGAAAGTAGATGA
1 AAAGA-AAAGAAGAAGA
*
70261755 AGAGAAAAGAA-AAGA
1 AAAGAAAAGAAGAAGA
70261770 AAAGAAAAGAAGAAGA
1 AAAGAAAAGAAGAAGA
70261786 AAA
1 AAA
70261789 AACTGAATCC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 13 0.45
16 12 0.41
17 4 0.14
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (16 bp):
AAAGAAAAGAAGAAGA
Found at i:70266219 original size:2 final size:2
Alignment explanation
Indices: 70266214--70266247 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
70266204 ACACACTCAC
*
70266214 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70266248 GTACCATTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70268156 original size:43 final size:39
Alignment explanation
Indices: 70268109--70268205 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 39
70268099 CATAAACAAA
70268109 AATACATTAAACATTATTTCCCCAAGAATCAATAGCATAACCG
1 AATACATT--ACATT-TTT-CCCAAGAATCAATAGCATAACCG
* * *
70268152 AATACA-TATATTTTTTCTAAGAATCAATAGCATAACCG
1 AATACATTACATTTTTCCCAAGAATCAATAGCATAACCG
*
70268190 AATACA-TATATTTTTC
1 AATACATTACATTTTTC
70268206 TTTCTCCCTA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
38 36 0.72
39 3 0.06
40 4 0.08
42 1 0.02
43 6 0.12
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33
Consensus pattern (39 bp):
AATACATTACATTTTTCCCAAGAATCAATAGCATAACCG
Found at i:70268174 original size:38 final size:38
Alignment explanation
Indices: 70268132--70268204 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
70268122 TTATTTCCCC
70268132 AAGAATCAATAGCATAACCGAATACATATATTTTTTCT
1 AAGAATCAATAGCATAACCGAATACATATATTTTTTCT
70268170 AAGAATCAATAGCATAACCGAATACATATATTTTT
1 AAGAATCAATAGCATAACCGAATACATATATTTTT
70268205 CTTTCTCCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (38 bp):
AAGAATCAATAGCATAACCGAATACATATATTTTTTCT
Found at i:70272712 original size:28 final size:28
Alignment explanation
Indices: 70272651--70272748 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
70272641 TCACAAATTG
** * *
70272651 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
70272680 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
70272708 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
70272736 GCACTAAGTGTGC
1 GCACTAAGTGTGC
70272749 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:70280382 original size:28 final size:28
Alignment explanation
Indices: 70280321--70280418 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
70280311 TCACAAATTG
** * *
70280321 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
70280350 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
70280378 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
70280406 GCACTAAGTGTGC
1 GCACTAAGTGTGC
70280419 GGGCTTATGC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:70288287 original size:27 final size:27
Alignment explanation
Indices: 70288163--70288287 Score: 180
Period size: 27 Copynumber: 4.6 Consensus size: 27
70288153 CAAAGTATCC
* *
70288163 CGATTTACATAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
70288190 CGATTTACAGAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
* *
70288217 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
70288244 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
70288271 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
70288288 AAAATACCCT
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 86 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:70288296 original size:54 final size:54
Alignment explanation
Indices: 70288184--70288314 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 54
70288174 ATTACCGTTT
* * * ***
70288184 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTAAAA
70288238 TACCCTTGATTTACAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTATC-GTTTTACCCTCGATTTACAAAATTACTAAAA
* *
70288292 TACCCTTGGTTTACAAAATTATC
1 TACCCTTGATTTACAGAATTATC
70288315 AAAATACCCT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 65 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:70288312 original size:81 final size:81
Alignment explanation
Indices: 70288164--70288312 Score: 185
Period size: 81 Copynumber: 1.8 Consensus size: 81
70288154 AAAGTATCCC
* * ** * *
70288164 GATTTACATAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTACAAAA
70288229 TTACTATTTTACCCTT
66 TTACTATTTTACCCTT
* * *
70288245 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA-C-TAAAATACCCTTGGTTTACAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGT--AATACCCTCGATTTACAA
70288308 AATTA
64 AATTA
70288313 TCAAAATACC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.02
80 1 0.02
81 55 0.96
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTACAAAA
TTACTATTTTACCCTT
Found at i:70288323 original size:54 final size:54
Alignment explanation
Indices: 70288265--70288592 Score: 233
Period size: 54 Copynumber: 6.1 Consensus size: 54
70288255 ATTACTGTTT
** *
70288265 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTATCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * * *
70288319 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* ** * * *
70288372 TACCC-CTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* ** * ***
70288426 TACCACT-GGTTT---GTATTACTGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * **
70288477 TACCC-CTGATTTACAAAATTA-TAGAAATACCCTTGACTTTCTAAAAATTATAAAAA
1 TACCCTC-GATTTACAAAATTACTA-AAATACCCTTG-GTTTGT-AAAATTACCAAAA
* * * * * *
70288533 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
*
70288587 CACCCT
1 TACCCT
70288593 TGTAGGGTGA
Statistics
Matches: 213, Mismatches: 45, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
50 1 0.00
51 40 0.19
52 1 0.00
53 43 0.20
54 79 0.37
55 9 0.04
56 39 0.18
57 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:70288383 original size:80 final size:81
Alignment explanation
Indices: 70288279--70288482 Score: 222
Period size: 80 Copynumber: 2.6 Consensus size: 81
70288269 CTCGATTTAC
* *
70288279 AAAATTACTAAAATACCCTTGGTTTACAAAATTATCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
70288343 AAATACC-CTGGTCTGT
65 AAATACCACTGGTCTGT
* ** * **
70288359 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
*
70288424 AATACCACTGGTTTGT
66 AATACCACTGGTCTGT
* ** **
70288440 ---ATTACTGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCCT-GGTTTACAAAATTACCAAAATACCCC
70288483 TGATTTACAA
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
77 4 0.04
78 34 0.31
79 2 0.02
80 60 0.56
81 8 0.07
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTGGTCTGT
Found at i:70288465 original size:51 final size:52
Alignment explanation
Indices: 70288335--70288480 Score: 163
Period size: 51 Copynumber: 2.8 Consensus size: 52
70288325 CGATCAGTAA
** * * * *
70288335 AATTACCAAAATA-CCCTGGTCTGTAAAATTGCTAAAATACCCCTGGTTTGT
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGGTTTGT
*
70288386 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 --AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGGTTTGT
**
70288440 -ATTACTGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACC
70288481 CCTGATTTAC
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
50 4 0.05
51 33 0.40
53 13 0.16
54 33 0.40
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (52 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGGTTTGT
Found at i:70288495 original size:78 final size:78
Alignment explanation
Indices: 70288333--70288497 Score: 201
Period size: 78 Copynumber: 2.1 Consensus size: 78
70288323 CTCGATCAGT
* **
70288333 AAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAAATTACCAAAATACCCTGGTCTGT--AATTACTAAAATACCCCTAATTTGTAAAATTACCAAA
**
70288398 ATACCCCTAGTTTGT
64 ATACCCCTAGTTTAC
* *
70288413 AAAATTACCAAAATACCACTGGTTTGT-ATTACTGAAATA-CCCTCAATTTGTAAAATTACCAAA
1 AAAATTACCAAAATACC-CTGGTCTGTAATTACTAAAATACCCCT-AATTTGTAAAATTACCAAA
70288476 ATACCCCT-GATTTAC
64 ATACCCCTAG-TTTAC
70288491 AAAATTA
1 AAAATTA
70288498 TAGAAATACC
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
77 5 0.07
78 45 0.60
80 17 0.23
81 8 0.11
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (78 bp):
AAAATTACCAAAATACCCTGGTCTGTAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAAT
ACCCCTAGTTTAC
Found at i:70288568 original size:27 final size:27
Alignment explanation
Indices: 70288238--70288571 Score: 166
Period size: 27 Copynumber: 12.4 Consensus size: 27
70288228 ATTACTATTT
* * ****
70288238 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
70288265 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
70288292 TACCCTTGGTTTACAAAATTA-TCAAAA
1 TACCCTTGGTTTACAAAATTACT-AAAA
* * * * *
70288319 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACTAAAA
* ** *
70288346 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* ** *
70288372 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
70288399 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
** *
70288426 TACCAC-TGGTTT---GTATTACTGAAA
1 TACC-CTTGGTTTACAAAATTACTAAAA
*** ** *
70288450 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
70288477 TACCCCTGATTTACAAAATTA-TAGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
*
70288504 TACCCTTGACTTT-CTAAAAATTA-TAAAAA
1 TACCCTTG-GTTTAC--AAAATTACT-AAAA
* *
70288533 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
70288560 TACCCTTGGTTT
1 TACCCTTGGTTT
70288572 GTAGATTTAC
Statistics
Matches: 243, Mismatches: 48, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
23 1 0.00
24 15 0.06
26 23 0.09
27 176 0.72
28 8 0.03
29 19 0.08
30 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:70288572 original size:134 final size:131
Alignment explanation
Indices: 70288274--70288574 Score: 293
Period size: 134 Copynumber: 2.3 Consensus size: 131
70288264 TTACCCTCGA
** *
70288274 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTATCAAAATACCCTCGATCAGTAAAATT
1 TTTACAAAATTACTAAAATACCCTTGGTTT---GTATTATCAAAATACCCTCAATCAGTAAAATT
* ** * * * * *
70288339 ACCAAAATACCCTGGTCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
63 ACCAAAATACCCTGATCTACAAAATTGATAAAATACCCCTGCTTTCTAAAATTACAAAAATACCA
70288404 CTAG
128 CTAG
** * * **
70288408 TTTGTAAAATTACCAAAATACCAC-TGGTTTGTATTA-CTGAAATACCCTCAATTTGTAAAATTA
1 TTTACAAAATTACTAAAATACC-CTTGGTTTGTATTATC-AAAATACCCTCAATCAGTAAAATTA
* * *
70288471 CCAAAATACCCCTGATTTACAAAATT-ATAGAAATACCCTTGACTTTCTAAAAATTATAAAAATA
64 CCAAAATA-CCCTGATCTACAAAATTGATA-AAATACCCCTG-CTTTCT-AAAATTACAAAAATA
* *
70288535 CCATTGG
125 CCACTAG
*
70288542 TTTACAAAATTACTGAAATACCCTTGGTTTGTA
1 TTTACAAAATTACTAAAATACCCTTGGTTTGTA
70288575 GATTTACCAA
Statistics
Matches: 134, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
130 1 0.01
131 35 0.26
132 23 0.17
133 5 0.04
134 69 0.51
135 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (131 bp):
TTTACAAAATTACTAAAATACCCTTGGTTTGTATTATCAAAATACCCTCAATCAGTAAAATTACC
AAAATACCCTGATCTACAAAATTGATAAAATACCCCTGCTTTCTAAAATTACAAAAATACCACTA
G
Found at i:70288654 original size:27 final size:28
Alignment explanation
Indices: 70288636--70288715 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 28
70288626 TAAAAATATT
*
70288636 GTAAAGCCCCTGTAGGGT-AAAGTGACC
1 GTAAAGCCCCTGTAGGGTAAAAATGACC
* *
70288663 GTAAAGCCCCTGTAGGGT-AAAGTGACT
1 GTAAAGCCCCTGTAGGGTAAAAATGACC
*
70288690 GTAATA-CCCCTGTATGGT-AAAATGAC
1 GTAA-AGCCCCTGTAGGGTAAAAATGAC
70288716 GAATATGCCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (28 bp):
GTAAAGCCCCTGTAGGGTAAAAATGACC
Found at i:70289631 original size:24 final size:25
Alignment explanation
Indices: 70289522--70289640 Score: 195
Period size: 25 Copynumber: 4.8 Consensus size: 25
70289512 AGGAAGTGCT
* *
70289522 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
70289547 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
70289572 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
70289597 AAAAGGACTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTATCG
70289621 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
70289641 ATTAAAAGAG
Statistics
Matches: 88, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 19 0.22
25 69 0.78
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:70289894 original size:31 final size:31
Alignment explanation
Indices: 70289859--70290032 Score: 269
Period size: 31 Copynumber: 5.6 Consensus size: 31
70289849 CGTTTACAAT
70289859 AAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
70289890 AAAGGCTTCGGCCCAG-AGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTA-ATATGATTTATGA
* * *
70289921 TAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
* *
70289952 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
* *
70289983 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
70290014 AAAGGCTTCGGCCCAGTAA
1 AAAGGCTTCGGCCCAGTAA
70290033 CCGTTAAACG
Statistics
Matches: 135, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
30 1 0.01
31 134 0.99
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGATTTATGA
Found at i:70289978 original size:93 final size:93
Alignment explanation
Indices: 70289860--70290028 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
70289850 GTTTACAATA
*
70289860 AAGGCTTCGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGATAAG
1 AAGGCTTCGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAAAAG
70289925 GCTTCGGCCCAATGATATGATTTATGAT
66 GCTTCGGCCCAATGATATGATTTATGAT
* * *
70289953 AAGGCTTCGGCCCAGTGATATGATTTATGATAAGGCTTCGGCCCAGTGATATGATTTATGAAAAG
1 AAGGCTTCGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAAAAG
70290018 GCTTCGGCCCA
66 GCTTCGGCCCA
70290029 GTAACCGTTA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (93 bp):
AAGGCTTCGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAAAAG
GCTTCGGCCCAATGATATGATTTATGAT
Found at i:70290030 original size:62 final size:62
Alignment explanation
Indices: 70289860--70290030 Score: 306
Period size: 62 Copynumber: 2.8 Consensus size: 62
70289850 GTTTACAATA
* *
70289860 AAGGCTTCGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAT
* *
70289922 AAGGCTTCGGCCCAATGATATGATTTATGATAAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAT
70289984 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGT
70290031 AACCGTTAAA
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 103 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (62 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:70291363 original size:15 final size:15
Alignment explanation
Indices: 70291343--70291380 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
70291333 AACTCGACAT
70291343 TTACTTGTCACTTTA
1 TTACTTGTCACTTTA
70291358 TTACTTGTCACTTTA
1 TTACTTGTCACTTTA
70291373 TTACTTGT
1 TTACTTGT
70291381 TGCGATTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.08, T:0.55
Consensus pattern (15 bp):
TTACTTGTCACTTTA
Found at i:70295526 original size:60 final size:60
Alignment explanation
Indices: 70295462--70295652 Score: 177
Period size: 60 Copynumber: 3.2 Consensus size: 60
70295452 TGGTCGTCAT
* * *
70295462 CATCCTTTTCCATTTTTCGATGGTCGTCACCATCCTTTTTCATAATTTGATACCCAAAGC
1 CATCCTTTTCCATTTTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAACCGAAGC
* *** * ** * * ***
70295522 CATCCTTTTTCATAGATAGATATTCG-AAGCCATCCCTTTTCATAACTTGATGGTCGAAGC
1 CATCCTTTTCCATTTTTCGATGGTCGTCA-CCATCCCTTTTCATAATTTGATAACCGAAGC
* * * * *
70295582 CATCCCTTTCCAATTTTCAATGGTCGTCAGCATCCCTTTCCATAATTTGATAACCGAAGC
1 CATCCTTTTCCATTTTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAACCGAAGC
70295642 CATCCCTTTTC
1 CAT-CCTTTTC
70295653 ATAGATCGAT
Statistics
Matches: 96, Mismatches: 32, Indels: 5
0.72 0.24 0.04
Matches are distributed among these distances:
59 1 0.01
60 88 0.92
61 7 0.07
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.37
Consensus pattern (60 bp):
CATCCTTTTCCATTTTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAACCGAAGC
Found at i:70295579 original size:30 final size:30
Alignment explanation
Indices: 70295491--70295655 Score: 129
Period size: 30 Copynumber: 5.5 Consensus size: 30
70295481 ATGGTCGTCA
* ** *
70295491 CCATCCTTTTTCATAATTTGATACCCAAAG
1 CCATCCCTTTTCATAATTTGATAGTCGAAG
* * *
70295521 CCATCCTTTTTCATAGA-TAGATATTCGAAG
1 CCATCCCTTTTCATA-ATTTGATAGTCGAAG
* *
70295551 CCATCCCTTTTCATAACTTGATGGTCGAAG
1 CCATCCCTTTTCATAATTTGATAGTCGAAG
* * * * *
70295581 CCATCCCTTTCCA-ATTTTCAATGGTCGTCAG
1 CCATCCCTTTTCATAATTT-GATAGTCG-AAG
* **
70295612 -CATCCCTTTCCATAATTTGATAACCGAAG
1 CCATCCCTTTTCATAATTTGATAGTCGAAG
70295641 CCATCCCTTTTCATA
1 CCATCCCTTTTCATA
70295656 GATCGATGAT
Statistics
Matches: 109, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
29 6 0.06
30 96 0.88
31 7 0.06
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTTGATAGTCGAAG
Found at i:70306946 original size:29 final size:29
Alignment explanation
Indices: 70306914--70307049 Score: 148
Period size: 29 Copynumber: 4.7 Consensus size: 29
70306904 ATACCCTTCG
** * * *
70306914 AGCTCGCACACCCAATGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
70306943 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
70306972 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
70307001 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
70307030 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
70307050 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:70306981 original size:58 final size:58
Alignment explanation
Indices: 70306889--70307040 Score: 151
Period size: 58 Copynumber: 2.6 Consensus size: 58
70306879 AATTTAAGCC
* *** * * * *
70306889 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAATGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACCCAATGCCGTATATTTCCAGCA
* * * * ** * *
70306947 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACCCAATGCCGTATATTTCCAGCA
*
70307005 CGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACAC
70307041 TTAGTGCCAA
Statistics
Matches: 74, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
58 74 1.00
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACCCAATGCCGTATATTTCCAGCA
Found at i:70307041 original size:58 final size:58
Alignment explanation
Indices: 70306929--70307048 Score: 168
Period size: 58 Copynumber: 2.1 Consensus size: 58
70306919 GCACACCCAA
* ** * * *
70306929 TGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAG
1 TGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCACGCACACTTAG
* *
70306987 TGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAG
1 TGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCACGCACACTTAG
70307045 TGCC
1 TGCC
70307049 AATCTCGTCA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (58 bp):
TGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCACGCACACTTAG
Found at i:70307883 original size:143 final size:141
Alignment explanation
Indices: 70307693--70307987 Score: 554
Period size: 143 Copynumber: 2.1 Consensus size: 141
70307683 AAATTCTATA
70307693 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
*
70307758 TGTTAAACATTCGAACTCACTTATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
70307823 GAAGACAACAT
131 GAAAACAACAT
70307834 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
70307899 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
70307964 AGGAAAACAACAT
129 AGGAAAACAACAT
70307977 GCATGGCCGAA
1 GCATGGCCGAA
70307988 ATTTAACTCA
Statistics
Matches: 150, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 131 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.22
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:70311172 original size:20 final size:21
Alignment explanation
Indices: 70311149--70311187 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
70311139 ATTAATTTAA
70311149 TAAACCTTAATT-AATTAACT
1 TAAACCTTAATTAAATTAACT
*
70311169 TAAACTTTAATTAAATTAA
1 TAAACCTTAATTAAATTAA
70311188 TTTTAATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAACCTTAATTAAATTAACT
Found at i:70319047 original size:123 final size:123
Alignment explanation
Indices: 70318828--70319412 Score: 1080
Period size: 123 Copynumber: 4.8 Consensus size: 123
70318818 GAATTATGTG
*
70318828 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
70318893 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
70318951 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
70319016 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
70319074 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
70319139 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
70319197 AAATGAAATATGGATGTGTAATGATTATTGATATACGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
70319262 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
70319320 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
70319385 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
70319413 AATTATATCC
Statistics
Matches: 450, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 450 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:70319436 original size:40 final size:40
Alignment explanation
Indices: 70319381--70319522 Score: 176
Period size: 40 Copynumber: 3.5 Consensus size: 40
70319371 TGAATGATAC
* * *
70319381 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATTATAT
* * * *
70319421 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATTATAT
* * **
70319461 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATTATAT
*
70319501 CCGGGCTAATACCCGAAGGCAT
1 CCGGGCTAAGACCCGAAGGCAT
70319523 ACCCGAAGGC
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATTATAT
Found at i:70319526 original size:12 final size:12
Alignment explanation
Indices: 70319509--70319534 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70319499 ATCCGGGCTA
70319509 ATACCCGAAGGC
1 ATACCCGAAGGC
70319521 ATACCCGAAGGC
1 ATACCCGAAGGC
70319533 AT
1 AT
70319535 TTGTGCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.31, G:0.23, T:0.12
Consensus pattern (12 bp):
ATACCCGAAGGC
Found at i:70319550 original size:52 final size:52
Alignment explanation
Indices: 70319469--70319574 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
70319459 ATCCGGGCTA
* *
70319469 ATACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGC
1 ATACCCGAAGGCATTTGTGCAAGTCGTTATATCCGGGCTAAGACCCGAAGGC
*
70319521 ATACCCGAAGGCATTTGTGCAAGTCGTTATATCCGGGCTAAGACCCGAGGGC
1 ATACCCGAAGGCATTTGTGCAAGTCGTTATATCCGGGCTAAGACCCGAAGGC
70319573 AT
1 AT
70319575 TCGTGCGTGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (52 bp):
ATACCCGAAGGCATTTGTGCAAGTCGTTATATCCGGGCTAAGACCCGAAGGC
Found at i:70326993 original size:123 final size:123
Alignment explanation
Indices: 70326667--70327247 Score: 1037
Period size: 122 Copynumber: 4.8 Consensus size: 123
70326657 GAATTATGTG
70326667 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
70326732 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTT-GAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
70326789 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
70326854 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
70326912 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
70326977 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCAAG-CTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
70327034 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAAT-G-ATCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
70327097 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * *
70327155 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTTGAATGATACCC-
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAG-TATTTGAATGGTACCCG
* * *
70327219 GGCTAAGTCCTGAAGACATTTATGCTAGT
65 GGCTAAGTCCCGAAGGCAATTATGCTAGT
70327248 AATTATCCGG
Statistics
Matches: 443, Mismatches: 11, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
120 50 0.11
121 57 0.13
122 182 0.41
123 151 0.34
124 3 0.01
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:70327295 original size:38 final size:39
Alignment explanation
Indices: 70327251--70327447 Score: 212
Period size: 38 Copynumber: 5.2 Consensus size: 39
70327241 TGCTAGTAAT
* * * *
70327251 TATCCGGGTTAAGA-CCGAAGGCA-TTGTGCTAGTGACTA
1 TATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTG-TTA
* *
70327289 TATCCGGGCTAATACCCGAAGACATTTGTGCAA--GTTG
1 TATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTGTTA
70327326 TATCCGGG-TAATACCCGAAGGCATTTGTGCAAGTGTTA
1 TATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTGTTA
70327364 TATCCGGGCTAATA-CCGAAGG-ATTTGTGCAAGTCGTTA
1 TATCCGGGCTAATACCCGAAGGCATTTGTGCAAGT-GTTA
* * * **
70327402 TAT-CGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTA
1 TATCCGGGCTAATACCCGAAGGCATTTGTGCAAGT-GTTA
70327441 TATCCGG
1 TATCCGG
70327448 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 14, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
36 23 0.17
37 30 0.22
38 44 0.32
39 29 0.21
40 10 0.07
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTGTTA
Found at i:70327341 original size:36 final size:36
Alignment explanation
Indices: 70327287--70327419 Score: 155
Period size: 37 Copynumber: 3.6 Consensus size: 36
70327277 TGCTAGTGAC
70327287 TATATCCGGGCTAATACCCGAAGACATTTGTGCAAGT
1 TATATCCGGGCTAATACCCGAAG-CATTTGTGCAAGT
*
70327324 TGTATCCGGG-TAATACCCGAAGGCATTTGTGCAAGTGT
1 TATATCCGGGCTAATACCCGAA-GCATTTGTGCAA--GT
*
70327362 TATATCCGGGCTAATA-CCGAAGGATTTGTGCAAGTCGT
1 TATATCCGGGCTAATACCCGAAGCATTTGTGCAA---GT
*
70327400 TATAT-CGGGCTAAGACCCGA
1 TATATCCGGGCTAATACCCGA
70327420 GGGCATTCGT
Statistics
Matches: 84, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
36 22 0.26
37 30 0.36
38 27 0.32
39 5 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (36 bp):
TATATCCGGGCTAATACCCGAAGCATTTGTGCAAGT
Found at i:70327426 original size:76 final size:75
Alignment explanation
Indices: 70327251--70327447 Score: 222
Period size: 75 Copynumber: 2.6 Consensus size: 75
70327241 TGCTAGTAAT
* *
70327251 TATCCGGGTTAAGA-CCGAAGGCA-TTGTGCTAGTGACTATATCCGGGCTAATACCCGAAGACAT
1 TATCCGGG-TAAGACCCGAAGGCATTTGTGCAAGTG-TTATATCCGGGCTAATACCCGAAGACAT
*
70327314 TTGTGCAAGTTG
64 TTGTGCAAGTCG
* *
70327326 TATCCGGGTAATACCCGAAGGCATTTGTGCAAGTGTTATATCCGGGCTAATA-CCGAAG-GATTT
1 TATCCGGGTAAGACCCGAAGGCATTTGTGCAAGTGTTATATCCGGGCTAATACCCGAAGACATTT
70327389 GTGCAAGTCG
66 GTGCAAGTCG
* * * **
70327399 TTATATCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATATCCGG
1 -TAT-CCGGG-TAAGACCCGAAGGCATTTGTGCAAGT-GTTATATCCGG
70327448 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
73 13 0.12
74 13 0.12
75 37 0.35
76 31 0.30
77 11 0.10
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (75 bp):
TATCCGGGTAAGACCCGAAGGCATTTGTGCAAGTGTTATATCCGGGCTAATACCCGAAGACATTT
GTGCAAGTCG
Found at i:70332840 original size:48 final size:48
Alignment explanation
Indices: 70332775--70333116 Score: 648
Period size: 48 Copynumber: 7.1 Consensus size: 48
70332765 GCTGAAATTG
*
70332775 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
70332823 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
70332871 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
70332919 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
70332967 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
70333015 ATATATTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTA-TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
70333064 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
70333112 ATGTA
1 ATGTA
70333117 GGCGATGTGT
Statistics
Matches: 289, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
48 242 0.84
49 47 0.16
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:70333371 original size:37 final size:37
Alignment explanation
Indices: 70333264--70333371 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
70333254 GGAAATATAT
*
70333264 TCCGGGTAAGACCC-ATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
70333300 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
70333337 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
70333372 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 14 0.21
37 54 0.79
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:70335462 original size:39 final size:39
Alignment explanation
Indices: 70335332--70335533 Score: 139
Period size: 39 Copynumber: 5.1 Consensus size: 39
70335322 CCAGATNATA
* * * *
70335332 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGT-GTTATAT
* * * * *
70335372 -CGGGTTAAGA-CCGAAGGCAATTGTG-TAGTGATATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTGTTATAT
70335408 -CGGGCTAATA-CCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAG-TGTTATAT
70335446 CCGGGCT-ATACCCGAAGCCCGAGGCATTTGTGCAAGTGTTATAT
1 CCGGGCTAATACCCG-A-----AGGCATTTGTGCAAGTGTTATAT
* * * **
70335490 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGT-GTTATAT
70335530 CCGG
1 CCGG
70335534 TTGTATTCCG
Statistics
Matches: 132, Mismatches: 17, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
36 27 0.20
37 6 0.05
38 22 0.17
39 28 0.21
40 12 0.09
44 16 0.12
45 21 0.16
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTGTTATAT
Found at i:70342815 original size:123 final size:123
Alignment explanation
Indices: 70342596--70343179 Score: 1071
Period size: 123 Copynumber: 4.8 Consensus size: 123
70342586 GAATTATGTG
70342596 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
*
70342661 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACTA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
70342719 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
70342784 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
70342842 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
*
70342907 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCAAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
70342965 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
70343030 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * *
70343088 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCA-TTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
* * *
70343152 GCTAAGTCCTGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
70343180 AATTATATCC
Statistics
Matches: 450, Mismatches: 11, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
122 40 0.09
123 410 0.91
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGATACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:70343217 original size:40 final size:40
Alignment explanation
Indices: 70343148--70343388 Score: 249
Period size: 40 Copynumber: 6.1 Consensus size: 40
70343138 TGAATGATAC
* * * * *
70343148 CCGGGCTAAGT-CCTGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTAGTTATAT
* * * * *
70343188 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGT-GACTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAG-TTATAT
* *
70343228 CCGGGCTAATACCCGAAGACATTTGTGC-A--AGTTGTAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATAT
*
70343265 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATAT
*
70343305 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATAT
* * * ** *
70343345 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATAT
70343385 CCGG
1 CCGG
70343389 TTGTATTCCG
Statistics
Matches: 171, Mismatches: 24, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
37 31 0.18
38 2 0.01
39 1 0.01
40 137 0.80
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTAGTTATAT
Found at i:70343285 original size:77 final size:78
Alignment explanation
Indices: 70343182--70343365 Score: 255
Period size: 77 Copynumber: 2.3 Consensus size: 78
70343172 ATGCTAGTAA
* *
70343182 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATATCCGGGCTAATACCCGAAG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG-CTATATCCGGGCTAATACCCGAAG
70343246 ACATTTGTGCAA-G
65 ACATTTGTGCAACG
* * * * *
70343259 TTGTATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGCTATATCCGGGCTAATACCCGAAGA
70343324 CATTTGTGCAAGTCG
66 CATTTGTGCAA--CG
*
70343339 TTATATCCGGGCTAAGACCCGAGGGCA
1 TTATATCCGGGCTAAGACCCGAAGGCA
70343366 TTCGTGCGTG
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
77 66 0.71
78 2 0.02
80 25 0.27
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGCTATATCCGGGCTAATACCCGAAGA
CATTTGTGCAACG
Found at i:70346393 original size:50 final size:48
Alignment explanation
Indices: 70346294--70346470 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 48
70346284 TTTGTGTGCA
*
70346294 AGTGTAAG--CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
* *
70346339 AGTGTAAGACCATATCTGGGACATGGCATCGG-CACAAATATGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-AATAT--GAGAGCC
* * * * * **
70346389 AGTGTAAGACCATGTCTGGGACATGG-AGTCAGCCTCGATTTCGATAATC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCGGCCACAATAT-GAGAGCC
70346438 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
70346471 ATTCTACCCC
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
45 8 0.07
47 16 0.15
48 11 0.10
49 35 0.32
50 38 0.35
51 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
Found at i:70350788 original size:22 final size:22
Alignment explanation
Indices: 70350763--70350804 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
70350753 GGGTGGACGG
70350763 TTTTGG-GAAGAAGATTAAGGGA
1 TTTTGGTGAAGAA-ATTAAGGGA
*
70350785 TTTTGGTGAGGAAATTAAGG
1 TTTTGGTGAAGAAATTAAGG
70350805 AGGGAGGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.31
Consensus pattern (22 bp):
TTTTGGTGAAGAAATTAAGGGA
Found at i:70353356 original size:62 final size:62
Alignment explanation
Indices: 70353259--70353382 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
70353249 CTAAGTGTGT
*
70353259 GAGATTGTTACGGATTTGGCAATTCACTGATCACTAAGTGTGCGAATTCTTAAAGCATGGAA
1 GAGATTGTTACGGATTCGGCAATTCACTGATCACTAAGTGTGCGAATTCTTAAAGCATGGAA
*
70353321 GAGATTGTTACGGATTCGGTAATTCACTGATCACTAAGTGTGCGAATTCTTAAAGCATGGAA
1 GAGATTGTTACGGATTCGGCAATTCACTGATCACTAAGTGTGCGAATTCTTAAAGCATGGAA
70353383 AGACTCCCAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (62 bp):
GAGATTGTTACGGATTCGGCAATTCACTGATCACTAAGTGTGCGAATTCTTAAAGCATGGAA
Found at i:70358531 original size:25 final size:25
Alignment explanation
Indices: 70358503--70358554 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
70358493 TTCAGAGTTG
70358503 ATTCAGATGATTTTAAATGAAACTC
1 ATTCAGATGATTTTAAATGAAACTC
* *
70358528 ATTCATATGATTTTCAATGAAACTC
1 ATTCAGATGATTTTAAATGAAACTC
70358553 AT
1 AT
70358555 AGCAGTCAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (25 bp):
ATTCAGATGATTTTAAATGAAACTC
Found at i:70365297 original size:20 final size:20
Alignment explanation
Indices: 70365272--70365416 Score: 209
Period size: 20 Copynumber: 7.2 Consensus size: 20
70365262 TGATATTTAA
* *
70365272 GGCTTTGTGCCGCTATCGAT
1 GGCTTTGTGCCACTATTGAT
*
70365292 GGCTTTGTGCCACTATCGAT
1 GGCTTTGTGCCACTATTGAT
70365312 GGCTTTGTGCCACTATTGAT
1 GGCTTTGTGCCACTATTGAT
*
70365332 GGCTTTGTGCCACTACTGAT
1 GGCTTTGTGCCACTATTGAT
*
70365352 GGCTTTGTGCCGCTATTGAT
1 GGCTTTGTGCCACTATTGAT
* *
70365372 GGCTTTTTGCCATTATTGAT
1 GGCTTTGTGCCACTATTGAT
* *
70365392 GGCTTTGTACCGCTATTGAT
1 GGCTTTGTGCCACTATTGAT
70365412 GGCTT
1 GGCTT
70365417 CGTGTTGCCA
Statistics
Matches: 113, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 113 1.00
ACGTcount: A:0.13, C:0.21, G:0.26, T:0.39
Consensus pattern (20 bp):
GGCTTTGTGCCACTATTGAT
Found at i:70365438 original size:40 final size:38
Alignment explanation
Indices: 70365274--70365439 Score: 163
Period size: 40 Copynumber: 4.2 Consensus size: 38
70365264 ATATTTAAGG
* *
70365274 CTTTGTGCCGCTATCGATGGCTTTGTGCCACTATCGATGG
1 CTTTGTGCCGCTATTGATGGCTTTGTGCCAC--TCGATGA
* *
70365314 CTTTGTGCCACTATTGATGGCTTTGTGCCACTACTGATGG
1 CTTTGTGCCGCTATTGATGGCTTTGTGCCACT-C-GATGA
* * * *
70365354 CTTTGTGCCGCTATTGATGGCTTTTTGCCATTATTGATGG
1 CTTTGTGCCGCTATTGATGGCTTTGTGCCA--CTCGATGA
*
70365394 CTTTGTACCGCTATTGATGGCTTCGTGTTGCCACTC-ATGA
1 CTTTGTGCCGCTATTGATGGCTT--TG-TGCCACTCGATGA
70365434 CTTTGT
1 CTTTGT
70365440 CCCATATACT
Statistics
Matches: 108, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 98 0.91
41 1 0.01
42 2 0.02
43 5 0.05
ACGTcount: A:0.13, C:0.22, G:0.25, T:0.40
Consensus pattern (38 bp):
CTTTGTGCCGCTATTGATGGCTTTGTGCCACTCGATGA
Found at i:70370484 original size:12 final size:12
Alignment explanation
Indices: 70370467--70370491 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70370457 GAGAGAGAAT
70370467 AATGAATGAGAG
1 AATGAATGAGAG
70370479 AATGAATGAGAG
1 AATGAATGAGAG
70370491 A
1 A
70370492 TAAGTGTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16
Consensus pattern (12 bp):
AATGAATGAGAG
Found at i:70376483 original size:30 final size:30
Alignment explanation
Indices: 70376442--70376498 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
70376432 AAGTGTTTCT
* *
70376442 TGGCTGTGTGAGTCACATAGCCTAGCCACA
1 TGGCCGTGTGAGTCACACAGCCTAGCCACA
*
70376472 TGGCCGTGTGAGTCACACAGCTTAGCC
1 TGGCCGTGTGAGTCACACAGCCTAGCC
70376499 CCACAGCCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (30 bp):
TGGCCGTGTGAGTCACACAGCCTAGCCACA
Found at i:70379452 original size:39 final size:40
Alignment explanation
Indices: 70379286--70379492 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
70379276 CGGAATTTAA
* * * * **
70379286 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
* * * *
70379326 CCGGTTATAGTGACTCGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
* ** * *
70379366 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
*
70379406 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGT-TTAGC
1 CCGGATATAATAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * *
70379445 CCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
70379485 CCGGATAT
1 CCGGATAT
70379493 CATTCCAATG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 104 0.74
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:70388708 original size:16 final size:16
Alignment explanation
Indices: 70388683--70388713 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70388673 CGTACATGAG
70388683 AGAAACAAAAAAAAAA
1 AGAAACAAAAAAAAAA
*
70388699 AGAAAGAAAAAAAAA
1 AGAAACAAAAAAAAA
70388714 TGTTCATTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (16 bp):
AGAAACAAAAAAAAAA
Found at i:70389862 original size:30 final size:30
Alignment explanation
Indices: 70389826--70389926 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
70389816 GACAAGATTG
* * *
70389826 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
70389856 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
70389884 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
70389913 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70389927 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:70389938 original size:29 final size:28
Alignment explanation
Indices: 70389855--70389930 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
70389845 AAAATTGTAC
* *
70389855 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
70389883 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
70389912 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
70389931 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:70397744 original size:30 final size:30
Alignment explanation
Indices: 70397708--70397808 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
70397698 GACAAGATTG
* * *
70397708 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
70397738 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
70397766 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
70397795 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70397809 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:70397820 original size:29 final size:28
Alignment explanation
Indices: 70397737--70397812 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
70397727 AAAATTGTAC
* *
70397737 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
70397765 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
70397794 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
70397813 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:70400782 original size:46 final size:46
Alignment explanation
Indices: 70400724--70400901 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
70400714 TGTAACCCGC
* *
70400724 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGATGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* **
70400770 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TCGCAT
* **
70400820 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
70400863 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
70400902 CTCAACCATC
Statistics
Matches: 110, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 3 0.03
46 65 0.59
47 29 0.26
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:70400839 original size:93 final size:93
Alignment explanation
Indices: 70400731--70400902 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
70400721 CGCCCATAAG
* **
70400731 CGAACTCGGACTCAACTCAATGAGCTCGGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70400796 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
70400824 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70400889 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70400903 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70404650 original size:49 final size:49
Alignment explanation
Indices: 70404523--70404876 Score: 596
Period size: 49 Copynumber: 7.4 Consensus size: 49
70404513 CCCTTCGGGA
* *
70404523 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70404570 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70404617 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70404666 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70404715 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70404762 CTTATCACATATATACACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70404810 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70404859 CTTATCACATATATATAC
1 CTTATCACATATATATAC
70404877 CTCATACAAA
Statistics
Matches: 290, Mismatches: 10, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
46 1 0.00
47 93 0.32
48 48 0.17
49 148 0.51
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70404727 original size:96 final size:96
Alignment explanation
Indices: 70404523--70404873 Score: 609
Period size: 96 Copynumber: 3.6 Consensus size: 96
70404513 CCCTTCGGGA
* * * *
70404523 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
70404588 -C-TTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
70404617 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
70404682 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
70404715 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
70404780 A-TTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
70404810 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
70404874 TACCTCATAC
Statistics
Matches: 247, Mismatches: 4, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
94 8 0.03
95 43 0.17
96 111 0.45
97 49 0.20
98 36 0.15
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70410261 original size:29 final size:29
Alignment explanation
Indices: 70410218--70410318 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
70410208 GAAAGCATGT
70410218 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATAGGCC
* *
70410247 GTATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATAGGCC
** *
70410276 ATACAAATATGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATAGGCC
*
70410305 ATATGAATGAGATT
1 ATATGAATGTGATT
70410319 AGGCCTAGTG
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATAGGCC
Found at i:70416573 original size:40 final size:40
Alignment explanation
Indices: 70416486--70416699 Score: 247
Period size: 40 Copynumber: 5.4 Consensus size: 40
70416476 AAGCCAAGTA
* * * *
70416486 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* *
70416524 CCTTCGGGACATAGCCCGGATATAATAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * *
70416564 CCTTCGGGACTTAGCCCGGATATAGTAGCTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
70416604 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * * * *
70416644 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAATAACTCGCACAAATG
70416684 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
70416700 TGGTTATCAT
Statistics
Matches: 152, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
38 12 0.08
39 18 0.12
40 122 0.80
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:70416619 original size:80 final size:79
Alignment explanation
Indices: 70416486--70416699 Score: 281
Period size: 80 Copynumber: 2.7 Consensus size: 79
70416476 AAGCCAAGTA
* * * * *
70416486 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
70416549 TAACTCGCACCAATG
65 TAACTCGCACAAATG
* *
70416564 CCTTCGGGACTTAGCCCGGATATAGTAGCTTGCACAAATGCCTTCGGGACTTAGCCCGGATGTAA
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
70416629 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
70416644 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCC
70416700 TGGTTATCAT
Statistics
Matches: 121, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
78 14 0.12
79 18 0.15
80 88 0.73
81 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
AACTCGCACAAATG
Found at i:70423589 original size:21 final size:22
Alignment explanation
Indices: 70423563--70423604 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
70423553 AACATGTACG
*
70423563 TGTCCCATGG-TCACACGGGCA
1 TGTCCCATGGACCACACGGGCA
*
70423584 TGTCCCTTGGACCACACGGGC
1 TGTCCCATGGACCACACGGGC
70423605 GTGTGAGCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.17, C:0.36, G:0.29, T:0.19
Consensus pattern (22 bp):
TGTCCCATGGACCACACGGGCA
Found at i:70429179 original size:25 final size:25
Alignment explanation
Indices: 70429118--70429232 Score: 110
Period size: 25 Copynumber: 4.6 Consensus size: 25
70429108 GAAGAACCAC
*
70429118 TAATCAGGAAGCTCCAGATAG-TCA-
1 TAATCAGGAAGCTCCAGAGAGCT-AT
*
70429142 TATATCGGGAAGCTCCAGAGAGCTAT
1 TA-ATCAGGAAGCTCCAGAGAGCTAT
* *
70429168 TAATCAGAAAGCTCCAGAGAGCCAT
1 TAATCAGGAAGCTCCAGAGAGCTAT
* * *
70429193 TAATTAGGAATCTCACAAAGAGCCT-T
1 TAATCAGGAAGCTC-CAGAGAG-CTAT
70429219 TAATCAGGAAGCTC
1 TAATCAGGAAGCTC
70429233 AGGAAGAGCC
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
24 2 0.03
25 49 0.66
26 22 0.30
27 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (25 bp):
TAATCAGGAAGCTCCAGAGAGCTAT
Found at i:70429216 original size:26 final size:26
Alignment explanation
Indices: 70429109--70429244 Score: 100
Period size: 25 Copynumber: 5.3 Consensus size: 26
70429099 GGTAGCTCCG
* *
70429109 AAGAACCACTAATCAGGAAGCTC-CA
1 AAGAGCCATTAATCAGGAAGCTCACA
* * * *
70429134 GATAGTCA-TATATCGGGAAGCTC-CA
1 AAGAGCCATTA-ATCAGGAAGCTCACA
* * *
70429159 GAGAGCTATTAATCAGAAAGCTC-CA
1 AAGAGCCATTAATCAGGAAGCTCACA
* * *
70429184 GAGAGCCATTAATTAGGAATCTCACA
1 AAGAGCCATTAATCAGGAAGCTCACA
* **
70429210 AAGAGCCTTTAATCAGGAAGCTCAGG
1 AAGAGCCATTAATCAGGAAGCTCACA
70429236 AAGAGCCAT
1 AAGAGCCAT
70429245 ATATCGGGAC
Statistics
Matches: 87, Mismatches: 21, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
24 2 0.02
25 53 0.61
26 32 0.37
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (26 bp):
AAGAGCCATTAATCAGGAAGCTCACA
Found at i:70429520 original size:13 final size:13
Alignment explanation
Indices: 70429502--70429566 Score: 57
Period size: 13 Copynumber: 5.3 Consensus size: 13
70429492 AAATGGGATT
70429502 TATACAATTCACA
1 TATACAATTCACA
**
70429515 TATACAA--CATT
1 TATACAATTCACA
70429526 TATACAATTCACA
1 TATACAATTCACA
* **
70429539 TATGCAA--CATT
1 TATACAATTCACA
70429550 TATACAATTCACA
1 TATACAATTCACA
70429563 TATA
1 TATA
70429567 TACAATTTCG
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
11 17 0.45
13 21 0.55
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.34
Consensus pattern (13 bp):
TATACAATTCACA
Found at i:70429531 original size:24 final size:24
Alignment explanation
Indices: 70429499--70429566 Score: 127
Period size: 24 Copynumber: 2.8 Consensus size: 24
70429489 TCCAAATGGG
70429499 ATTTATACAATTCACATATACAAC
1 ATTTATACAATTCACATATACAAC
*
70429523 ATTTATACAATTCACATATGCAAC
1 ATTTATACAATTCACATATACAAC
70429547 ATTTATACAATTCACATATA
1 ATTTATACAATTCACATATA
70429567 TACAATTTCG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.44, C:0.19, G:0.01, T:0.35
Consensus pattern (24 bp):
ATTTATACAATTCACATATACAAC
Found at i:70429574 original size:24 final size:23
Alignment explanation
Indices: 70429499--70429574 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 23
70429489 TCCAAATGGG
70429499 ATTTATACAATTCACATAT-ACAA
1 ATTTATACAATTCACATATAAC-A
70429522 CATTTATACAATTCACATATGCAAC-
1 -ATTTATACAATTCACATAT--AACA
70429547 ATTTATACAATTCACATATATACA
1 ATTTATACAATTCACATATA-ACA
70429571 ATTT
1 ATTT
70429575 CGTACATACG
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
22 1 0.02
23 2 0.04
24 42 0.89
27 2 0.04
ACGTcount: A:0.43, C:0.18, G:0.01, T:0.37
Consensus pattern (23 bp):
ATTTATACAATTCACATATAACA
Found at i:70434208 original size:29 final size:28
Alignment explanation
Indices: 70434174--70434275 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 28
70434164 TACTCAATCA
*
70434174 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
70434203 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
70434232 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
70434261 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
70434276 GATCTTGTCA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:70437896 original size:26 final size:25
Alignment explanation
Indices: 70437867--70437919 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
70437857 ATTCAACAAC
* * *
70437867 TAGGGGTATTTTGGTCATTTTCACCT
1 TAGGGGAATTTTGATAATTTTC-CCT
70437893 TAGGGGAATTTTGATAATTTTCCCT
1 TAGGGGAATTTTGATAATTTTCCCT
70437918 TA
1 TA
70437920 ATTACGATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.45
Consensus pattern (25 bp):
TAGGGGAATTTTGATAATTTTCCCT
Done.