Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 239 of 345
Found at i:70440650 original size:47 final size:47
Alignment explanation
Indices: 70440580--70441062 Score: 765
Period size: 47 Copynumber: 10.3 Consensus size: 47
70440570 ATGATATACA
70440580 TATATGTGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTG
*
70440627 TATATATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
70440673 TATATGTGTGATAAGGCCGAACGGCC-ATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
70440719 TATATGTGTGATAAGGCCGAACGGCCAATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
70440766 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
70440813 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * *
70440860 TATATGTGTGATAAGGCCGAACGGCCAACGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
70440907 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * *
70440954 TATATGTGTGGTAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
70441001 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
70441048 CATATGTGTGATAAG
1 TATATGTGTGATAAG
70441063 TCCCGAAGGG
Statistics
Matches: 404, Mismatches: 30, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 89 0.22
47 313 0.77
48 2 0.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:70443000 original size:48 final size:48
Alignment explanation
Indices: 70442928--70443138 Score: 341
Period size: 48 Copynumber: 4.4 Consensus size: 48
70442918 GGGTGTTACA
*
70442928 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
70442976 AAATATATATGAGATATGTTTATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
70443024 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGATAGTTTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
70443072 AAATATGTATGAGATATGTATATTTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
70443120 AAATATGTAGGAGATATGT
1 AAATATGTATGAGATATGT
70443139 GTATATTGTG
Statistics
Matches: 150, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 150 1.00
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:70443325 original size:37 final size:37
Alignment explanation
Indices: 70443275--70443377 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
70443265 GGAAATATAT
70443275 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
70443312 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
70443349 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
70443378 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:70444456 original size:29 final size:29
Alignment explanation
Indices: 70444389--70444503 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
70444379 TATATACATG
* * *
70444389 CATATAGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
70444417 CGA-ATGGCCCATTTGGCCCAGTTCATATT
1 C-ATATGGCCCATTAGGCCCAATTCATATT
* * *
70444446 CTTATGTCCCACTAGGCCCAATTCACT-TT
1 CATATGGCCCATTAGGCCCAATTCA-TATT
*
70444475 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
70444504 ATACTCATGC
Statistics
Matches: 68, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
28 16 0.24
29 51 0.75
30 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:70444768 original size:24 final size:24
Alignment explanation
Indices: 70444714--70444761 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
70444704 TATTGTTGCC
*
70444714 CAAC-TTTCGGCTTTTCGGCATTT
1 CAACTTTTTGGCTTTTCGGCATTT
*
70444737 CAACTTTTTGGCTTTTTGGCATTT
1 CAACTTTTTGGCTTTTCGGCATTT
70444761 C
1 C
70444762 GGCTTTTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.12, C:0.23, G:0.17, T:0.48
Consensus pattern (24 bp):
CAACTTTTTGGCTTTTCGGCATTT
Found at i:70450373 original size:55 final size:54
Alignment explanation
Indices: 70450286--70450515 Score: 253
Period size: 55 Copynumber: 4.3 Consensus size: 54
70450276 ATTAGGGTTT
*
70450286 AAGGATACCATGTAAGACCATGCCAAGTCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * *
70450341 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
70450396 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGT
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
70450449 AAGGATACCATGTAAGACCATGTCGAGACATGACAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
70450498 AAGGATACCATGTAAGAC
1 AAGGATACCATGTAAGAC
70450516 TATAAAAAGT
Statistics
Matches: 151, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
49 18 0.12
52 7 0.05
53 38 0.25
54 12 0.08
55 72 0.48
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:70450492 original size:108 final size:110
Alignment explanation
Indices: 70450293--70450493 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
70450283 TTTAAGGATA
*
70450293 CCATGTAAGACCATGCCAAGTCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
70450358 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
* *
70450403 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGTAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
70450465 ACCATGTCGAGACATGACAATGGTAAGTT
65 ACCATGTCAAGACATGACAATGATAAGTT
70450494 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:70458074 original size:55 final size:52
Alignment explanation
Indices: 70457987--70458240 Score: 257
Period size: 55 Copynumber: 4.8 Consensus size: 52
70457977 ATTAGGGTTT
*
70457987 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA-TTGGTAA-G-TTCTAAGGC
* * *
70458042 AAGGATTCCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * * *
70458097 AAATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
* * * *
70458150 AAGGATACCATGTAAGACCATGTCGAGACATGGAAATGGTAAGTT-TAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
* * * *
70458198 AAGGATACCATGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
70458241 GTACTCGTGT
Statistics
Matches: 173, Mismatches: 21, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
48 40 0.23
51 3 0.02
52 5 0.03
53 42 0.24
54 7 0.04
55 73 0.42
56 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:70458193 original size:108 final size:110
Alignment explanation
Indices: 70457994--70458194 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
70457984 TTTAAGGATA
*
70457994 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGATTCCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
70458059 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAATGTC
*
70458104 CCATGTAAGACCATGCCAAGGCATGGCA-TTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
70458166 ACCATGTCGAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
70458195 TAAAAGGATA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 6 0.07
110 28 0.33
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAATGTC
Found at i:70461911 original size:9 final size:9
Alignment explanation
Indices: 70461897--70461921 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
70461887 TTTATCATCT
70461897 TTTAATTAA
1 TTTAATTAA
70461906 TTTAATTAA
1 TTTAATTAA
70461915 TTTAATT
1 TTTAATT
70461922 TCCAATTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTAATTAA
Found at i:70465574 original size:29 final size:29
Alignment explanation
Indices: 70465476--70465560 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 29
70465466 CTGTATCTAG
* * *
70465476 CCCATTAAGCCC-AATCATATTTATATGA
1 CCCATTAGGCCCAAATCACATTTATATGT
* *
70465504 CCCATTAGGCCCAAATCACCTGTATATGT
1 CCCATTAGGCCCAAATCACATTTATATGT
70465533 CCCATTAGGCCCAAATCACATTTATATG
1 CCCATTAGGCCCAAATCACATTTATATG
70465561 GCTAGTTAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 11 0.22
29 38 0.78
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.29
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATTTATATGT
Found at i:70469109 original size:46 final size:46
Alignment explanation
Indices: 70469036--70469212 Score: 284
Period size: 46 Copynumber: 3.9 Consensus size: 46
70469026 ATATATATAT
* * * *
70469036 ATATACATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
*
70469082 ATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
* *
70469128 ATATCCATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
70469174 ATATCCATCTCA-ACACATTTCGCATTAGCCATTCGGCTT
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTT
70469213 CGCCACATAT
Statistics
Matches: 123, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 25 0.20
46 98 0.80
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
Found at i:70469287 original size:47 final size:47
Alignment explanation
Indices: 70469236--70469465 Score: 379
Period size: 47 Copynumber: 4.9 Consensus size: 47
70469226 CACTTCCACG
* * **
70469236 TTCATTACATTGGCTATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
70469283 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
70469330 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
**
70469377 TTCATCACATTGGCCATTCGGCCTTATCATGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
70469424 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGT
70469466 ACATATATGC
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 172 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:70469314 original size:22 final size:22
Alignment explanation
Indices: 70469286--70469405 Score: 68
Period size: 22 Copynumber: 5.2 Consensus size: 22
70469276 GTTCACATTC
70469286 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
70469308 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
70469332 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
70469355 ATCACACATAT-GCAAGTTC-ACATT
1 AT--CACAT-TGGCCA-TTCGGCCTT
70469379 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70469402 ATCA
1 ATCA
70469406 TGTATATGCA
Statistics
Matches: 72, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 20 0.28
23 18 0.25
24 18 0.25
25 16 0.22
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70469406 original size:25 final size:25
Alignment explanation
Indices: 70469331--70469406 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
70469321 ATGTTCACAT
70469331 TCATCACATTGGCCATTCGGCCTTA
1 TCATCACATTGGCCATTCGGCCTTA
* * *
70469356 TCA-CACATAT-GCAAGTTC--ACAT-
1 TCATCACAT-TGGCCA-TTCGGCCTTA
70469378 TCATCACATTGGCCATTCGGCCTTA
1 TCATCACATTGGCCATTCGGCCTTA
70469403 TCAT
1 TCAT
70469407 GTATATGCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 7 0.18
23 10 0.26
24 10 0.26
25 11 0.29
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (25 bp):
TCATCACATTGGCCATTCGGCCTTA
Found at i:70473575 original size:23 final size:22
Alignment explanation
Indices: 70473522--70473647 Score: 112
Period size: 23 Copynumber: 5.5 Consensus size: 22
70473512 TGAGCTGATG
70473522 AACAGTAAGCTCTATCAAGCTA
1 AACAGTAAGCTCTATCAAGCTA
* *
70473544 AACAATAAGCTCTATCGAGCTAA
1 AACAGTAAGCTCTATCAAGCT-A
* *
70473567 AACGGTAAGCTCTAAT-GAGCTGAA
1 AACAGTAAGCTCT-ATCAAGCT--A
*
70473591 AATAGTAAGCTCT-TACAAGCTGA
1 AACAGTAAGCTCTAT-CAAGCT-A
* * *
70473614 AACGGTAAACTCTATCAAGCTG
1 AACAGTAAGCTCTATCAAGCTA
70473636 AACAGTAAGCTC
1 AACAGTAAGCTC
70473648 ATACGAGCTG
Statistics
Matches: 84, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
22 30 0.36
23 34 0.40
24 20 0.24
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (22 bp):
AACAGTAAGCTCTATCAAGCTA
Found at i:70473598 original size:24 final size:23
Alignment explanation
Indices: 70473522--70473656 Score: 109
Period size: 22 Copynumber: 5.9 Consensus size: 23
70473512 TGAGCTGATG
*
70473522 AACAGTAAGCTCTATCAAGCT-A
1 AACAGTAAGCTCTATCGAGCTAA
*
70473544 AACAATAAGCTCTATCGAGCTAA
1 AACAGTAAGCTCTATCGAGCTAA
*
70473567 AACGGTAAGCTCTAAT-GAGCTGAA
1 AACAGTAAGCTCT-ATCGAGCT-AA
* * *
70473591 AATAGTAAGCTCT-TACAAGCTGA
1 AACAGTAAGCTCTAT-CGAGCTAA
* * * *
70473614 AACGGTAAACTCTATCAAGCT-G
1 AACAGTAAGCTCTATCGAGCTAA
70473636 AACAGTAAGCTC-ATACGAGCT
1 AACAGTAAGCTCTAT-CGAGCT
70473657 GATATATCGG
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.02
22 35 0.38
23 34 0.37
24 20 0.22
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (23 bp):
AACAGTAAGCTCTATCGAGCTAA
Found at i:70473635 original size:47 final size:45
Alignment explanation
Indices: 70473526--70473658 Score: 139
Period size: 45 Copynumber: 2.9 Consensus size: 45
70473516 CTGATGAACA
*
70473526 GTAAGCTCTATCAAGCT-AAACAA-TAAGCTCTATCGAGCTAAAACG
1 GTAAGCTCTATCAAGCTGAAA-AAGTAAGCTCTA-CGAGCTGAAACG
* *
70473571 GTAAGCTCTAAT-GAGCTGAAAATAGTAAGCTCTTACAAGCTGAAACG
1 GTAAGCTCT-ATCAAGCTGAAAA-AGTAAGCTC-TACGAGCTGAAACG
* *
70473618 GTAAACTCTATCAAGCTG-AACAGTAAGCTCATACGAGCTGA
1 GTAAGCTCTATCAAGCTGAAAAAGTAAGCTC-TACGAGCTGA
70473659 TATATCGGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 12
0.79 0.09 0.13
Matches are distributed among these distances:
45 32 0.43
46 10 0.14
47 30 0.41
48 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (45 bp):
GTAAGCTCTATCAAGCTGAAAAAGTAAGCTCTACGAGCTGAAACG
Found at i:70473656 original size:69 final size:69
Alignment explanation
Indices: 70473525--70473658 Score: 157
Period size: 69 Copynumber: 1.9 Consensus size: 69
70473515 GCTGATGAAC
* * * *
70473525 AGTAAGCTCTATCAAGCTAAACAATAAGCTCTATCGAGCTAAAACGGTAAGCTCTAATGAGCTGA
1 AGTAAGCTCTATCAAGCTAAACAATAAACTCTATCAAGCTAAAACAGTAAGCTCTAACGAGCTGA
70473590 AAAT
66 AAAT
** *
70473594 AGTAAGCTCT-TACAAGCTGAAACGGTAAACTCTATCAAGCT-GAACAGTAAGCTC-ATACGAGC
1 AGTAAGCTCTAT-CAAGCT-AAACAATAAACTCTATCAAGCTAAAACAGTAAGCTCTA-ACGAGC
70473656 TGA
63 TGA
70473659 TATATCGGTA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
68 2 0.04
69 35 0.64
70 18 0.33
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (69 bp):
AGTAAGCTCTATCAAGCTAAACAATAAACTCTATCAAGCTAAAACAGTAAGCTCTAACGAGCTGA
AAAT
Found at i:70476291 original size:18 final size:18
Alignment explanation
Indices: 70476268--70476304 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
70476258 AATTTCGGTC
70476268 AAAGAAACTTTGAAGATG
1 AAAGAAACTTTGAAGATG
70476286 AAAGAAACTTTGAAGATG
1 AAAGAAACTTTGAAGATG
70476304 A
1 A
70476305 TGACTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.22, T:0.22
Consensus pattern (18 bp):
AAAGAAACTTTGAAGATG
Found at i:70480446 original size:44 final size:42
Alignment explanation
Indices: 70480396--70480508 Score: 129
Period size: 42 Copynumber: 2.6 Consensus size: 42
70480386 TGTGAGTTCA
** * *
70480396 TGTAAGACCATGTCTGGGATGTTGTCATCGACT-TCTGGTTTACG
1 TGTAAGACCATGTCTGGGACATTGGCATC-A-TATCTGATTT-CG
*
70480440 TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTCG
* *
70480482 TGTAAGACCTTGTCTGGGACAGTGGCA
1 TGTAAGACCATGTCTGGGACATTGGCA
70480509 ACGATGTTTG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
42 28 0.46
43 7 0.11
44 26 0.43
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATATCTGATTTCG
Found at i:70480533 original size:43 final size:42
Alignment explanation
Indices: 70480440--70480544 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
70480430 CTGGTTTACG
* * *
70480440 TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTCG
1 TGTAAGACCATGTCTGGGACAGTGGCAACATATTTGATTTCA
* *
70480482 TGTAAGACCTTGTCTGGGACAGTGGCAACGATGTTTGATTAT-A
1 TGTAAGACCATGTCTGGGACAGTGGCAAC-ATATTTGATT-TCA
* *
70480525 TGTAAGACCACGTATGGGAC
1 TGTAAGACCATGTCTGGGAC
70480545 GTCAGCATTG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 26 0.49
43 26 0.49
44 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTGGCAACATATTTGATTTCA
Found at i:70482235 original size:27 final size:26
Alignment explanation
Indices: 70482187--70482246 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
70482177 GCGAGGCTGC
*
70482187 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
70482214 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
70482240 CAGATAT
1 CAGATAT
70482247 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70492267 original size:40 final size:40
Alignment explanation
Indices: 70492198--70492382 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
70492188 AAACCAAGTA
* * *
70492198 CCTTCGGGATTTAG-CCGGATATCGCAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
70492237 CCTTCGGGACTTAACCCGGATATAGTAACTCACACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * * * *
70492277 CCTTCGGGTCTTGGCCCGAAAATAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCA-CACAAATG
* * *
70492317 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCACACAAATG
70492360 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
70492383 CATCCGAATA
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
39 13 0.11
40 73 0.61
43 33 0.28
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:70494752 original size:40 final size:39
Alignment explanation
Indices: 70494654--70494907 Score: 289
Period size: 40 Copynumber: 6.4 Consensus size: 39
70494644 AAGCCAAGTA
* * *
70494654 CCTTCGGGATTTAACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
* * *
70494692 CCTTTGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
* * *
70494732 CCTTCGGGACTTAGCTCGGATATAGTAGCTCTCACAAATA
1 CCTTCGGGACTTAGC-CGGATATAGTAACTCGCACAAATG
*
70494772 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
* *
70494812 CCTTCGGGACTTAGCCTGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATG
* * *
70494852 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCC-GGATA-TAGTAACTCGCACAAATG
70494892 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
70494908 CGGTTATCAT
Statistics
Matches: 188, Mismatches: 21, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
38 11 0.06
39 20 0.11
40 156 0.83
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:70501535 original size:39 final size:40
Alignment explanation
Indices: 70501435--70501616 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
70501425 TCGAATGATG
* * *
70501435 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
70501475 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
70501515 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
70501553 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
70501594 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70501617 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:70501580 original size:78 final size:80
Alignment explanation
Indices: 70501435--70501616 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
70501425 TCGAATGATG
* * * *
70501435 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
70501500 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
70501515 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
70501577 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
70501594 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70501617 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:70509555 original size:39 final size:40
Alignment explanation
Indices: 70509455--70509636 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
70509445 TCGAATGATG
* * *
70509455 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
70509495 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
70509535 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
70509573 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
70509614 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70509637 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:70509600 original size:78 final size:80
Alignment explanation
Indices: 70509455--70509636 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
70509445 TCGAATGATG
* * * *
70509455 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
70509520 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
70509535 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
70509597 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
70509614 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70509637 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:70514076 original size:40 final size:40
Alignment explanation
Indices: 70513991--70514245 Score: 286
Period size: 40 Copynumber: 6.4 Consensus size: 40
70513981 AAGCCAAGTA
* * * *
70513991 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCAGATATAG-TAACTCGCACAAATG
* *
70514029 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* * * *
70514069 CCTTCGGGACTTAGGCCGGATATAGTAGCTCGCACAAATA
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* * *
70514109 CCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* *
70514149 CCTTCGGGACTTAGCCC-GAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAG-ATATAGTAACTCGCACAAATG
* * *
70514189 CCTTCGGGACTTAGCCCAGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCAGATA-TAGTAACTCGCACAAATG
70514229 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
70514246 GGTTATCATC
Statistics
Matches: 188, Mismatches: 23, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 158 0.84
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
Found at i:70514238 original size:120 final size:120
Alignment explanation
Indices: 70514025--70514247 Score: 317
Period size: 120 Copynumber: 1.9 Consensus size: 120
70514015 CTACTCGCTC
* * * *
70514025 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGGCCGGAT
1 AATGCCTTCGGGACATAGCCCAGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAT
*
70514090 ATAGTAGCTCGCACAAATACCTTCGGGACTTAGCCCGGATATAATAACTCACACA
66 ATAGTAGCTAGCACAAATACCTTCGGGACTTAGCCCGGATATAATAACTCACACA
* *
70514145 AATGCCTTCGGGACTTAGCCC-GAATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
1 AATGCCTTCGGGACATAGCCCAG-ATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
* *
70514209 -ACTAGTCA-CTAGCGCAAATGCCTTCGGGACTTAGCCCGG
65 TA-TAGT-AGCTAGCACAAATACCTTCGGGACTTAGCCCGG
70514248 TTATCATCCG
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
119 2 0.02
120 88 0.97
121 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCAGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAT
ATAGTAGCTAGCACAAATACCTTCGGGACTTAGCCCGGATATAATAACTCACACA
Found at i:70523188 original size:40 final size:39
Alignment explanation
Indices: 70523119--70523346 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 39
70523109 AAACCAAGTA
* * *
70523119 CCTTCGGGATTTAGCCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
* *
70523158 CCTTCGGGACTTAACCTGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATG
* * * *
70523198 CCTTCGGGTCTTAGCCCGGCGAAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAG-CC-G-G-ATATAGTAACTCGCACAAATG
* * *
70523241 CCTTCGGGACTTAGCCCGAGTATAGCAGCTACTCACACAAATG
1 CCTTCGGGACTTAGCCGGA-TATAGTA---ACTCGCACAAATG
* *
70523284 CCTTCCGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
*
70523324 CCTTTGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAG-CCGGATAT
70523347 CATTCGAATA
Statistics
Matches: 154, Mismatches: 26, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
39 15 0.10
40 69 0.45
41 3 0.02
42 3 0.02
43 60 0.39
44 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:70523242 original size:43 final size:41
Alignment explanation
Indices: 70523119--70523342 Score: 181
Period size: 43 Copynumber: 5.5 Consensus size: 41
70523109 AAACCAAGTA
* * * * *
70523119 CCTTCGGGATTTAG-CC-GGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGGAAATAGTAACTAGCACAAATG
* * * * *
70523158 CCTTCGGGACTTA-ACCTGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGGAAATAGTAACTAGCACAAATG
* *
70523198 CCTTCGGGTCTTAGCCCGGCGAAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGG-G-AAATAGTAACTAGCACAAATG
* * *
70523241 CCTTCGGGACTTAGCCCGAG-TATAGCAGCTACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGGAAATAGTA---ACT-AGCACAAATG
* * *
70523284 CCTTCCGGACTTAGCCC-GGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGGAAATAGTAACTAGCACAAATG
*
70523324 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70523343 ATATCATTCG
Statistics
Matches: 151, Mismatches: 22, Indels: 22
0.77 0.11 0.11
Matches are distributed among these distances:
39 14 0.09
40 62 0.41
41 4 0.03
42 3 0.02
43 67 0.44
44 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGGAAATAGTAACTAGCACAAATG
Found at i:70523265 original size:83 final size:81
Alignment explanation
Indices: 70523144--70523346 Score: 230
Period size: 83 Copynumber: 2.5 Consensus size: 81
70523134 CGGATATCGC
* * * * * * * *
70523144 AACTCGCACAAATGCCTTCGGGACTTAACCTGGATATAGTA-ACTCGCACACATGCCTTCGGGTC
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCACACTCACACAAATGCCTTCCGGAC
70523208 TTAGCCCGGCGAAAATAGT
66 TTAGCCC-G-G-AAATAGT
*
70523227 CACTAGCACAAATGCCTTCGGGACTTAGCCC-GAGTATAGCAGCTACTCACACAAATGCCTTCCG
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-TATAGCA-C-ACTCACACAAATGCCTTCCG
*
70523291 GACTTAGCCCGGATATAGT
63 GACTTAGCCCGGAAATAGT
* *
70523310 AACTTGCACAAATGCCTTTGGGACTTAGCCCGGATAT
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
70523347 CATTCGAATA
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
82 2 0.02
83 70 0.69
84 3 0.03
85 1 0.01
86 26 0.25
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (81 bp):
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCACACTCACACAAATGCCTTCCGGAC
TTAGCCCGGAAATAGT
Found at i:70529124 original size:24 final size:26
Alignment explanation
Indices: 70529080--70529128 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
70529070 CGAGGTAAGT
70529080 TTGTATGTTAAATAAGCTTTAATATAA
1 TTGTATGTTAAAT-AGCTTTAATATAA
70529107 TTGTAT-TTAAAT-GCTTTAATAT
1 TTGTATGTTAAATAGCTTTAATAT
70529129 TGCATGAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (26 bp):
TTGTATGTTAAATAGCTTTAATATAA
Found at i:70535276 original size:27 final size:28
Alignment explanation
Indices: 70535237--70535292 Score: 105
Period size: 27 Copynumber: 2.0 Consensus size: 28
70535227 AGACGTAAGC
70535237 CAGTGTAAGACATGTCTGGGACATGCAT
1 CAGTGTAAGACATGTCTGGGACATGCAT
70535265 CAGT-TAAGACATGTCTGGGACATGCAT
1 CAGTGTAAGACATGTCTGGGACATGCAT
70535292 C
1 C
70535293 GGCTACGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (28 bp):
CAGTGTAAGACATGTCTGGGACATGCAT
Found at i:70535315 original size:73 final size:74
Alignment explanation
Indices: 70535196--70535340 Score: 174
Period size: 73 Copynumber: 2.0 Consensus size: 74
70535186 AGTGCTAGTG
* *
70535196 TAAGACATGTTCGGGACATGCATCGGCCTTGAGACGTAAGCCAGTGTAAGA-CATGTCTGGGACA
1 TAAGACATGTTCGGGACATGCATCGGCCTCGAGAC-TAAGCCAGTGTAAGACCATATCTGGGACA
70535260 T-GCATCAGT
65 TGGCATCAGT
*
70535269 TAAGACATG-TCTGGGACATGCATCGG-CTACGAGA-TAATAGTCAGTGTAAGACCATATCTGGG
1 TAAGACATGTTC-GGGACATGCATCGGCCT-CGAGACT-A-AGCCAGTGTAAGACCATATCTGGG
*
70535331 ATATGGCATC
62 ACATGGCATC
70535341 GGCACCCTAC
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
71 1 0.02
72 5 0.08
73 39 0.63
74 12 0.19
75 5 0.08
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (74 bp):
TAAGACATGTTCGGGACATGCATCGGCCTCGAGACTAAGCCAGTGTAAGACCATATCTGGGACAT
GGCATCAGT
Found at i:70536561 original size:21 final size:21
Alignment explanation
Indices: 70536501--70536559 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
70536491 TCAAATTGGT
70536501 CACACGGGCGTGTTGCCCTCC
1 CACACGGGCGTGTTGCCCTCC
70536522 CACACGGGCGTGTTGCCCTCC
1 CACACGGGCGTGTTGCCCTCC
70536543 CACACGGGCGTG-TGCCC
1 CACACGGGCGTGTTGCCC
70536560 CTGTGTCAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.13
21 33 0.87
ACGTcount: A:0.10, C:0.42, G:0.31, T:0.17
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTCC
Found at i:70538282 original size:30 final size:30
Alignment explanation
Indices: 70538197--70538293 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
70538187 TAAACTAAAA
* *
70538197 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
70538227 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* *
70538257 TGAGTTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
70538286 ATGAGCTA
1 -TGAGCTA
70538294 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:70543205 original size:38 final size:39
Alignment explanation
Indices: 70543163--70543335 Score: 189
Period size: 38 Copynumber: 4.5 Consensus size: 39
70543153 AGCTTAAAGA
* *
70543163 CCCGCAGGCTAT-ATGCTGGAATTATATCCAGGTTAAAT
1 CCCGCAGGCTATCGTGCTGGAATTATATCCGGGTTAAAT
*
70543201 CCCGCAGG-TTTCGTGCTGGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTATCGTGCTGG-AATTATATCCGGGTTAAAT
*
70543239 CCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTATCGTGCTGGAATTATATCCGGGTTAAAT
* * *
70543277 CCCGCAGGCCTA--GTGCTGGTATTATATCTGAGTTTAAAGT
1 CCCGCAGG-CTATCGTGCTGGAATTATATCCG-GGTTAAA-T
*
70543317 CCCGTAGGCT-TCGTGCTGG
1 CCCGCAGGCTATCGTGCTGG
70543336 TGTTATATTT
Statistics
Matches: 118, Mismatches: 7, Indels: 18
0.83 0.05 0.13
Matches are distributed among these distances:
37 3 0.03
38 87 0.74
39 13 0.11
40 15 0.13
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.31
Consensus pattern (39 bp):
CCCGCAGGCTATCGTGCTGGAATTATATCCGGGTTAAAT
Found at i:70543256 original size:76 final size:78
Alignment explanation
Indices: 70543147--70543335 Score: 240
Period size: 76 Copynumber: 2.4 Consensus size: 78
70543137 ATTTGATGTG
* * * **
70543147 TATCCGAGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCAGGTTAAATCCCGCAGGTT
1 TATCCGAGGTTAAAGTCCCGCAGGCT-TCGTGCTGGAATTATATCCAGGTTAAATCCCGCAGGCC
*
70543211 TCGTGCTGGTAATA
65 TAGTGCTGGTAATA
* *
70543225 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
1 TATCCGAGGTTAAAGTCCCGCAGGCTTCGTGCTGGAATTATATCCAGGTTAAATCCCGCAGGCCT
*
70543288 AGTGCTGGTATTA
66 AGTGCTGGTAATA
* * *
70543301 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGG
1 TATCCGAGGTTAAAGTCCCGCAGGCTTCGTGCTGG
70543336 TGTTATATTT
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
75 1 0.01
76 58 0.60
77 12 0.12
78 25 0.26
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (78 bp):
TATCCGAGGTTAAAGTCCCGCAGGCTTCGTGCTGGAATTATATCCAGGTTAAATCCCGCAGGCCT
AGTGCTGGTAATA
Found at i:70546838 original size:29 final size:29
Alignment explanation
Indices: 70546718--70546842 Score: 180
Period size: 29 Copynumber: 4.3 Consensus size: 29
70546708 AAGTCTACAT
* *
70546718 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
70546746 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
***
70546775 ACATTTGCATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
70546804 ACATTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
70546833 ACATTCATAT
1 ACATTCATAT
70546843 ACATGCTTTC
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 21 0.25
29 63 0.75
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:70555217 original size:27 final size:27
Alignment explanation
Indices: 70555176--70555229 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
70555166 TGTCATGTGA
* *
70555176 AATTGAATGGCAAATTATTTTTACATG
1 AATTGAATGGCAAATTACTATTACATG
70555203 AATTGAAT-GCTAAATTACTATTACATG
1 AATTGAATGGC-AAATTACTATTACATG
70555230 GGTTGTACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:70555545 original size:49 final size:50
Alignment explanation
Indices: 70555455--70555700 Score: 262
Period size: 49 Copynumber: 4.9 Consensus size: 50
70555445 ATCTATTGTG
* * *
70555455 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
70555505 -GGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * **
70555555 CGATCACGTGTGTAGTACTAAGTGCAGACTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * ***
70555605 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAATGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
** **
70555655 -GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
70555701 GCCTTGTCTA
Statistics
Matches: 159, Mismatches: 35, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
49 77 0.48
50 45 0.28
51 37 0.23
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:70558170 original size:38 final size:38
Alignment explanation
Indices: 70558125--70558202 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
70558115 ATGAATTTTA
*
70558125 AAGTATGTTTCAATATTTTTACTTAAGTGTGCTTAAAT
1 AAGTATGTTTCAATATTTTTACTTAAGTATGCTTAAAT
70558163 AAGTATGTTTCAATATTTTTACTTAAGTATGCTTAAAT
1 AAGTATGTTTCAATATTTTTACTTAAGTATGCTTAAAT
70558201 AA
1 AA
70558203 ATTATTGTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.46
Consensus pattern (38 bp):
AAGTATGTTTCAATATTTTTACTTAAGTATGCTTAAAT
Found at i:70560619 original size:27 final size:27
Alignment explanation
Indices: 70560586--70560995 Score: 441
Period size: 27 Copynumber: 15.2 Consensus size: 27
70560576 CAAAGTACTC
70560586 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70560613 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
70560640 TGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70560667 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
70560694 CGATTTTTAAAATTACTGTTTTACCAT
1 CGATTTACAGAATTACCGTTTTACCCT
70560721 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70560748 C-AGTTTACAGAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
**
70560775 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* **
70560802 CGATTTACAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
70560829 C-AGTTTATAGAATTACTGTATTATCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
70560856 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
70560883 CGATTTGTAAAATTACCGTTTTACCAT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
70560910 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
70560937 C-AGTTTACAAAATTATCATTTTACTCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
70560964 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70560991 TGATT
1 CGATT
70560996 GTGAAATTAC
Statistics
Matches: 318, Mismatches: 59, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.01
27 312 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:70561038 original size:27 final size:27
Alignment explanation
Indices: 70561008--70561193 Score: 221
Period size: 27 Copynumber: 6.9 Consensus size: 27
70560998 GAAATTACTA
70561008 AAATACCCTTGTAGGGTAGAATT-TCCG
1 AAATACCCTTGTAGGGTAGAATTAT-CG
* * *
70561035 AAATACCCCTATAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTATCG
* * * *
70561062 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTATCG
* *
70561089 AAATACCCCTGTAGGGTAGAATTATCA
1 AAATACCCTTGTAGGGTAGAATTATCG
* *
70561116 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTATCG
*
70561143 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTATCG
* * *
70561170 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCTTGTAGGGTAGAATTA
70561194 CCATTTTGCC
Statistics
Matches: 135, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
27 134 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTATCG
Found at i:70561067 original size:54 final size:54
Alignment explanation
Indices: 70561008--70561195 Score: 277
Period size: 54 Copynumber: 3.5 Consensus size: 54
70560998 GAAATTACTA
* * *
70561008 AAATACCCTTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCG
* * * *
70561062 AAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCA
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCG
*
70561116 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCG
* * *
70561170 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
70561196 ATTTTGCCCC
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 118 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCG
Found at i:70561444 original size:25 final size:26
Alignment explanation
Indices: 70561396--70561446 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
70561386 GAGGAAGCGT
*
70561396 TCTGGTGGCTGTGCCACAATATCTGTA
1 TCTGGTGACTGT-CCACAATATCTGTA
70561423 TCTGGTGACTGT-CACAATATCTGT
1 TCTGGTGACTGTCCACAATATCTGT
70561447 TGACCGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.52
27 11 0.48
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.35
Consensus pattern (26 bp):
TCTGGTGACTGTCCACAATATCTGTA
Found at i:70561567 original size:22 final size:22
Alignment explanation
Indices: 70561535--70561593 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
70561525 CCCGTTGTTA
*
70561535 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
70561557 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
70561579 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
70561594 ACATATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:70561780 original size:27 final size:27
Alignment explanation
Indices: 70561758--70561831 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
70561748 TAGGTGGGTT
*
70561758 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
70561785 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
70561812 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
70561832 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:70561958 original size:6 final size:6
Alignment explanation
Indices: 70561949--70562141 Score: 184
Period size: 6 Copynumber: 31.8 Consensus size: 6
70561939 TTGCATTCAC
* *
70561949 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
70561998 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
70562046 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
*
70562095 ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTTTG ATTCTG ATTCT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
70562142 CATTTGGGTT
Statistics
Matches: 155, Mismatches: 16, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
5 11 0.07
6 131 0.85
7 10 0.06
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:70562103 original size:85 final size:85
Alignment explanation
Indices: 70561949--70562136 Score: 267
Period size: 85 Copynumber: 2.2 Consensus size: 85
70561939 TTGCATTCAC
* *
70561949 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
70562014 TGATTCTGATTCTG-TTACTG
66 TGATTCTGATTCTGATT-CTG
**
70562034 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATT-CTGTTACTAATA
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTG-TTACTAATACTAAT-
70562098 T-TGATTCTGATTCTGATTCTG
64 TCTGATTCTGATTCTGATTCTG
*
70562119 -TTACTGATTTTGATTCTG
1 ATT-CTGATTCTGATTCTG
70562137 ATTCTCATTT
Statistics
Matches: 94, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
84 2 0.02
85 87 0.93
86 5 0.05
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
TGATTCTGATTCTGATTCTG
Found at i:70565385 original size:21 final size:20
Alignment explanation
Indices: 70565345--70565384 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
70565335 TAATCGCATA
70565345 AATTGTAAAAGTGACCTTTT
1 AATTGTAAAAGTGACCTTTT
* *
70565365 AATTGTTAAAGTGGCCTTTT
1 AATTGTAAAAGTGACCTTTT
70565385 TGTTATGGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (20 bp):
AATTGTAAAAGTGACCTTTT
Found at i:70566535 original size:43 final size:43
Alignment explanation
Indices: 70566408--70566569 Score: 186
Period size: 43 Copynumber: 3.8 Consensus size: 43
70566398 ACATGTGTTA
* * * *
70566408 TCATGTAAGACCATGTCTGGGACATTGGGATCGACT-TATGATT
1 TCATGTAAGACCACGTCTGGGACATTGGCATTGA-TATTTGATT
* * *
70566451 TACATGTAAGACCGCGTCTGGGACATTGGCA-TCATACTTGATT
1 T-CATGTAAGACCACGTCTGGGACATTGGCATTGATATTTGATT
*
70566494 TCATGTAAGACC-CTGTCTGGGACAGTGGCATTGATATTTGATT
1 TCATGTAAGACCAC-GTCTGGGACATTGGCATTGATATTTGATT
* *
70566537 ACATGTAAGACCACGTCGGGGACATTGGCATTG
1 TCATGTAAGACCACGTCTGGGACATTGGCATTG
70566570 TACGAGCTTT
Statistics
Matches: 101, Mismatches: 13, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 46 0.46
44 27 0.27
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
TCATGTAAGACCACGTCTGGGACATTGGCATTGATATTTGATT
Found at i:70574105 original size:42 final size:43
Alignment explanation
Indices: 70574046--70574158 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
70574036 TGTGTTATCG
** *
70574046 TGTAAGACCACGTCTGGGATGTTGGCATCGA-ACTTGATTTCA
1 TGTAAGACCATATCTGGGATGTTGGCATCGATACTTGATTACA
* *
70574088 TGTAAGACCCTATCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCATATCTGGGAT-GTTGGCATCGATACTTGATTACA
* * *
70574131 TGTAAGACCATGTCGGGGACGTTGGCAT
1 TGTAAGACCATATCTGGGATGTTGGCAT
70574159 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGATGTTGGCATCGATACTTGATTACA
Found at i:70575694 original size:40 final size:40
Alignment explanation
Indices: 70575657--70575842 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
70575647 GCTACTCGTT
*
70575657 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70575697 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
70575737 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
70575777 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70575818 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70575843 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70578620 original size:42 final size:43
Alignment explanation
Indices: 70578561--70578673 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
70578551 TGTGTTATTG
** *
70578561 TGTAAGACCACGTCTGGGATGTTGGCATCGA-ACTTGATTTCA
1 TGTAAGACCATATCTGGGATGTTGGCATCGATACTTGATTACA
* *
70578603 TGTAAGACCCTATCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCATATCTGGGAT-GTTGGCATCGATACTTGATTACA
* * *
70578646 TGTAAGACCATGTCGGGGACGTTGGCAT
1 TGTAAGACCATATCTGGGATGTTGGCAT
70578674 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGATGTTGGCATCGATACTTGATTACA
Found at i:70580211 original size:40 final size:40
Alignment explanation
Indices: 70580174--70580359 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
70580164 GCTACTCGTT
*
70580174 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70580214 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
70580254 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
70580294 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70580335 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70580360 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70588418 original size:40 final size:40
Alignment explanation
Indices: 70588381--70588567 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
70588371 GCTACTCGTT
*
70588381 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70588421 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
70588461 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
70588501 CCAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 -CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70588543 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70588568 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
40 94 0.70
41 36 0.27
42 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70588556 original size:81 final size:81
Alignment explanation
Indices: 70588381--70588567 Score: 256
Period size: 81 Copynumber: 2.3 Consensus size: 81
70588371 GCTACTCGTT
*
70588381 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
70588445 GATTTAGTAACTCGCA
66 GATATAGTAACTAGCA
* **
70588461 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA-CAAATGCCTTCGGGA-CTTAACC
*
70588524 CGGATATAGTCACTTAGCA
64 CGGATATAGTAAC-TAGCA
70588543 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70588568 CATCATTCGA
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
80 38 0.40
81 49 0.52
82 8 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATATAGTAACTAGCA
Found at i:70591755 original size:25 final size:25
Alignment explanation
Indices: 70591718--70591769 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
70591708 AAGGAATTCG
70591718 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
70591743 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
70591768 CA
1 CA
70591770 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:70592002 original size:40 final size:40
Alignment explanation
Indices: 70591945--70592210 Score: 367
Period size: 40 Copynumber: 6.7 Consensus size: 40
70591935 CCAGCATGAT
* * * *
70591945 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAGCTTAGCCCGGATACATCACTAGCACGAA
* *
70591985 TACTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAGCTTAGCCCGGATACATCACTAGCACGAA
* * *
70592025 TGCCCTTCGGGGCTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAGCTTAGCCCGGATACATCACTAGCACGAA
*
70592065 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAGCTTAGCCCGGATACATCACTAGCACGAA
* * * *
70592105 TGCCCTTCGGGGCTTAGCCTGGATACATCACTAGCACAAA
1 TGCTCTTCGGAGCTTAGCCCGGATACATCACTAGCACGAA
*
70592145 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAGCTTAGCCCGGATACATCACTAGCACGAA
*
70592185 TGCTCTTCGGA-C-TAACCCGGAT-CATC
1 TGCTCTTCGGAGCTTAGCCCGGATACATC
70592211 GTCGAGACCT
Statistics
Matches: 201, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
37 4 0.02
38 9 0.04
39 1 0.00
40 187 0.93
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAGCTTAGCCCGGATACATCACTAGCACGAA
Found at i:70592333 original size:38 final size:38
Alignment explanation
Indices: 70592264--70592338 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
70592254 GAATTTTAAT
*
70592264 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
70592302 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
70592339 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:70596434 original size:40 final size:39
Alignment explanation
Indices: 70596390--70596642 Score: 355
Period size: 40 Copynumber: 6.4 Consensus size: 39
70596380 TCTTCGGGGT
* * *
70596390 TTAGCACGGATATATCACTAGCACGAATACTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-AC
* *
70596430 TTAGCCCGGATACATCACTAGCACGAATGCCCTTCGGGGC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGAC
*
70596470 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-AC
* *
70596510 TTAGCCCGGATACATCACTAGCACGAATGCCCTTCGGGC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
* * *
70596549 TTAGCCTGGATACATCACTAGCACAAATGCTCTTCGGGGC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGAC
70596589 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
*
70596628 TTAACCCGGAT-CATC
1 TTAGCCCGGATACATC
70596643 GTCGAGACCT
Statistics
Matches: 192, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 4 0.02
39 48 0.25
40 138 0.72
41 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC
Found at i:70596474 original size:80 final size:79
Alignment explanation
Indices: 70596381--70596625 Score: 393
Period size: 80 Copynumber: 3.1 Consensus size: 79
70596371 CATGATTGCT
* *
70596381 CTTCGGGGTTTAGCACGGATATATCACTAGCACGAATACTCTTCGGAACTTAGCCCGGATACATC
1 CTTCGGGGCTTAGC-CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
70596446 ACTAGCACGAATGCC
65 ACTAGCACGAATGCC
70596461 CTTCGGGGCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
1 CTTCGGGGCTTAG-CCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
70596526 ACTAGCACGAATGCC
65 ACTAGCACGAATGCC
* * **
70596541 CTTC-GGGCTTAGCCTGGATACATCACTAGCACAAATGCTCTTCGGGGCTTAGCCCGGATACATC
1 CTTCGGGGCTTAGCC-GGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
*
70596605 ACTAGCACGAATGCT
65 ACTAGCACGAATGCC
70596620 CTTCGG
1 CTTCGG
70596626 ACTTAACCCG
Statistics
Matches: 155, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
78 2 0.01
79 71 0.46
80 81 0.52
81 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
CTTCGGGGCTTAGCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
CTAGCACGAATGCC
Found at i:70596597 original size:79 final size:79
Alignment explanation
Indices: 70596381--70596638 Score: 399
Period size: 79 Copynumber: 3.2 Consensus size: 79
70596371 CATGATTGCT
* * *
70596381 CTTCGGGGTTTAGCACGGATATATCACTAGCACGAATACTCTTCGGAACTTAGCCCGGATACATC
1 CTTC-GGGCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
70596446 ACTAGCACGAATGCC
65 ACTAGCACGAATGCC
70596461 CTTCGGGGCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
1 CTTC-GGGCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
70596526 ACTAGCACGAATGCC
65 ACTAGCACGAATGCC
* * * **
70596541 CTTCGGGCTTAGCCTGGATACATCACTAGCACAAATGCTCTTCGGGGCTTAGCCCGGATACATCA
1 CTTCGGGCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
*
70596606 CTAGCACGAATGCT
66 CTAGCACGAATGCC
* *
70596620 CTTCGGACTTAACCCGGAT
1 CTTCGGGCTTAGCCCGGAT
70596639 CATCGTCGAG
Statistics
Matches: 166, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
79 85 0.51
80 81 0.49
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
CTTCGGGCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
CTAGCACGAATGCC
Found at i:70596765 original size:38 final size:38
Alignment explanation
Indices: 70596696--70596770 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
70596686 GAATTTTAAT
*
70596696 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
70596734 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
70596771 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:70602090 original size:14 final size:14
Alignment explanation
Indices: 70602071--70602115 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
70602061 AACTCATCTT
*
70602071 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
70602085 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
70602098 AATTTAATTTAATG
1 AGTTTAATTTAATG
70602112 AGTT
1 AGTT
70602116 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:70603126 original size:29 final size:29
Alignment explanation
Indices: 70603093--70603149 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
70603083 ATAACCAAAC
*
70603093 CTACAAAAACTTTATATCCATAAACCCAA
1 CTACAAAAACTTCATATCCATAAACCCAA
*
70603122 CTACATAAACTTCATATCCATAAACCCA
1 CTACAAAAACTTCATATCCATAAACCCA
70603150 TCTTTGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.25
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAA
Found at i:70604734 original size:30 final size:30
Alignment explanation
Indices: 70604700--70604796 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
70604690 TAATCTAAAA
*
70604700 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCATGAGCTAAAGT
* * * * *
70604730 TGAGCTGAGGC-TAAGCTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCATGAGCTAAAGT
* *
70604760 TGAGCTAAGGTTTAGCTCATGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCATGAGCT-AAAGT
70604790 TGAGCTA
1 TGAGCTA
70604797 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 2 0.04
30 44 0.85
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCATGAGCTAAAGT
Found at i:70605257 original size:26 final size:26
Alignment explanation
Indices: 70605228--70605283 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
70605218 TGATACAAAT
70605228 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70605254 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70605280 TGAT
1 TGAT
70605284 TGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70606793 original size:26 final size:26
Alignment explanation
Indices: 70606727--70606801 Score: 80
Period size: 28 Copynumber: 2.8 Consensus size: 26
70606717 AAAAGTAGCT
* * *
70606727 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGCA
*
70606755 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGGTGCA
*
70606781 AAATTACCATTATA-CCCTAGG
1 AAATTACTATTATACCCCTAGG
70606802 GTTACTTTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
25 7 0.17
26 15 0.37
27 1 0.02
28 18 0.44
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGCA
Found at i:70606987 original size:54 final size:53
Alignment explanation
Indices: 70606905--70607045 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
70606895 AGGAAGCGTC
70606905 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
70606959 CTGGTGGCTGTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
70607013 CTGGTGGTTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
70607046 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 7 0.09
54 74 0.91
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:70607041 original size:32 final size:27
Alignment explanation
Indices: 70606905--70607045 Score: 189
Period size: 27 Copynumber: 5.2 Consensus size: 27
70606895 AGGAAGCGTC
*
70606905 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
70606932 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
70606959 CTGGTGGCTGTGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
70606986 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
70607013 CTGGTGGTTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
70607040 CTGGTG
1 CTGGTG
70607046 ACTTCGTCAC
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.09
27 90 0.88
28 3 0.03
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:70607056 original size:27 final size:28
Alignment explanation
Indices: 70606905--70607063 Score: 167
Period size: 27 Copynumber: 5.9 Consensus size: 28
70606895 AGGAAGCGTC
*
70606905 CTGGTGGC-TATGCCACAATTATCTG-AT
1 CTGGTGGCTTCTGCCACAA-TATCTGTAT
70606932 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTCTGCCACA-ATATCTGTAT
* *
70606959 CTGGTGGC-TGTGCCACGATTATCTG-AT
1 CTGGTGGCTTCTGCCAC-AATATCTGTAT
70606986 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTCTGCCACA-ATATCTGTAT
70607013 CTGGTGG-TTCTGCCACAATATCTGTAT
1 CTGGTGGCTTCTGCCACAATATCTGTAT
* *
70607040 CTGGTGACTTC-GTCACAATATCTG
1 CTGGTGGCTTCTGCCACAATATCTG
70607064 GCAGCCTCGC
Statistics
Matches: 116, Mismatches: 7, Indels: 18
0.82 0.05 0.13
Matches are distributed among these distances:
26 9 0.08
27 102 0.88
28 5 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTTCTGCCACAATATCTGTAT
Found at i:70611946 original size:17 final size:17
Alignment explanation
Indices: 70611887--70611946 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
70611877 GAGACAGCCA
* * *
70611887 CCATACATGCAGTTAAG
1 CCATTCATGCATTTAAT
70611904 CCATTCATGCATTCT-AT
1 CCATTCATGCATT-TAAT
*
70611921 -CATCCCATGCATTTAAT
1 CCAT-TCATGCATTTAAT
70611938 CCATTCATG
1 CCATTCATG
70611947 GACTAGACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 4 0.12
17 26 0.76
18 4 0.12
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (17 bp):
CCATTCATGCATTTAAT
Found at i:70613561 original size:29 final size:29
Alignment explanation
Indices: 70613495--70613551 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
70613485 GATTCAAAGA
*
70613495 TGGGTTTATGGATATGAAGTTTATGTAGT
1 TGGGTTTATGGATATAAAGTTTATGTAGT
*
70613524 TGGGTTTATGGATATAAAGTTTTTGTAG
1 TGGGTTTATGGATATAAAGTTTATGTAG
70613552 GTTTGGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.46
Consensus pattern (29 bp):
TGGGTTTATGGATATAAAGTTTATGTAGT
Found at i:70617423 original size:14 final size:14
Alignment explanation
Indices: 70617387--70617422 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
70617377 TTGATCCCTT
*
70617387 TTTTCTTTTCATCT
1 TTTTCTTTTCATCG
70617401 TTTTCTTTTC-TCG
1 TTTTCTTTTCATCG
70617414 TTTTCTTTT
1 TTTTCTTTT
70617423 TACAAGAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.75
Consensus pattern (14 bp):
TTTTCTTTTCATCG
Found at i:70634551 original size:26 final size:27
Alignment explanation
Indices: 70634508--70634558 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
70634498 TAATGCCCCA
**
70634508 ATTTTTAAGTTTTCTGTGT-TTCTGTG
1 ATTTTTAAAATTTCTGTGTGTTCTGTG
*
70634534 ATTTTTAAAATTTGTGTGTGTTCTG
1 ATTTTTAAAATTTCTGTGTGTTCTG
70634559 GTTGGTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.16, C:0.06, G:0.20, T:0.59
Consensus pattern (27 bp):
ATTTTTAAAATTTCTGTGTGTTCTGTG
Found at i:70636166 original size:27 final size:26
Alignment explanation
Indices: 70636114--70636173 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
70636104 ATATATATAT
*
70636114 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
70636140 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
70636167 ATATCTG
1 ATATCTG
70636174 GGAGCCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:70640366 original size:54 final size:53
Alignment explanation
Indices: 70640302--70640435 Score: 178
Period size: 54 Copynumber: 2.5 Consensus size: 53
70640292 AAATACTTAG
* * *
70640302 TTTAATTAATTAAGTTGCTGGAGTAAATTACTCATCTTAGTTAATTGAGTTCAT
1 TTTAGTTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTC-T
* * *
70640356 TTTAGTTAATTAGGTTGCTGGAATAAATTATTCATGTTAGTTAATTAAGTTCT
1 TTTAGTTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCT
* *
70640409 TCTTAGTTAATTTAGTTGCTAGAATAA
1 T-TTAGTTAATTAAGTTGCTGGAATAA
70640436 TTTAATGATG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
53 2 0.03
54 68 0.97
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.46
Consensus pattern (53 bp):
TTTAGTTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCT
Found at i:70642544 original size:27 final size:26
Alignment explanation
Indices: 70642514--70642601 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 26
70642504 TGAAAACTGG
*
70642514 GGGTATTTCAGTAATTTCACAAATCGA
1 GGGTATTTTAGTAATTT-ACAAATCGA
*
70642541 GGGTGTTTTAGTAATTTACAAATC-A
1 GGGTATTTTAGTAATTTACAAATCGA
*
70642566 GGGGTATTTTAGTAATTTTACAAATTGA
1 -GGGTATTTTAGTAA-TTTACAAATCGA
70642594 GGGTATTT
1 GGGTATTT
70642602 ACGACCCAAC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
25 1 0.02
26 20 0.37
27 32 0.59
28 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTAGTAATTTACAAATCGA
Found at i:70642602 original size:26 final size:26
Alignment explanation
Indices: 70642497--70642602 Score: 92
Period size: 27 Copynumber: 4.0 Consensus size: 26
70642487 GGGTATCTCG
* *
70642497 GTAATTTTGA-AAACTGGGGGTATTTCA
1 GTAATTTT-ACAAATTGAGGGTATTT-A
* * *
70642524 GTAATTTCACAAATCGAGGGTGTTTTA
1 GTAATTTTACAAATTGAGGGT-ATTTA
*
70642551 GTAA-TTTACAAA-TCAGGGGTATTTTA
1 GTAATTTTACAAATTGA-GGGTA-TTTA
70642577 GTAATTTTACAAATTGAGGGTATTTA
1 GTAATTTTACAAATTGAGGGTATTTA
70642603 CGACCCAACC
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
25 1 0.02
26 24 0.38
27 33 0.52
28 5 0.08
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAATTGAGGGTATTTA
Found at i:70643804 original size:335 final size:335
Alignment explanation
Indices: 70643194--70643864 Score: 1297
Period size: 335 Copynumber: 2.0 Consensus size: 335
70643184 TGGTAAATGA
70643194 AAACCTCGACCCACTATCTAACAAGATAGGAACCTAGGTATGTTTGAACGCCACACTACGAGTAG
1 AAACCTCGACCCACTATCTAACAAGATAGGAACCTAGGTATGTTTGAACGCCACACTACGAGTAG
*
70643259 TGATAAGTTCGATTTCGACAAAGAACAACGGTTGACACACTAGAACGCTAGGAAGCCAATCGAAT
66 TGATAAGTTCGATTTCGACAAAGAACAACGGTTGACACACTAGAACACTAGGAAGCCAATCGAAT
* *
70643324 CTTTGATCGAAATTTGAGAAAAGTTTTGCCTAACAAATTTGGTAGCATAACATTAACAAAAGTCC
131 CTTTGAACGAAATTTGAGAAAAGTTTTGCCTAACAAATTCGGTAGCATAACATTAACAAAAGTCC
70643389 AAAAAGTTCTTTTCAAAGTAACACAAGCCACAATTTATAGTGAATGCAAGGGATAGCCGAATAGG
196 AAAAAGTTCTTTTCAAAGTAACACAAGCCACAATTTATAGTGAATGCAAGGGATAGCCGAATAGG
70643454 CTCTTGAGGTAGCTAAATGGTTGCTGAAAATTCCAGAATTTTTGATGAAGCTTCCTTGAAGTTTC
261 CTCTTGAGGTAGCTAAATGGTTGCTGAAAATTCCAGAATTTTTGATGAAGCTTCCTTGAAGTTTC
70643519 TTGTGCATGG
326 TTGTGCATGG
*
70643529 AAACCTCGACCCACTATCTAACAAGATAGGAACCTCGGTATGTTTGAACGCCACACTACGAGTAG
1 AAACCTCGACCCACTATCTAACAAGATAGGAACCTAGGTATGTTTGAACGCCACACTACGAGTAG
*
70643594 TGATAAGTTCGGTTTCGACAAAGAACAACGGTTGACACACTAGAACACTAGGAAGCCAATCGAAT
66 TGATAAGTTCGATTTCGACAAAGAACAACGGTTGACACACTAGAACACTAGGAAGCCAATCGAAT
70643659 CTTTGAACGAAATTTGAGAAAAGTTTTGCCTAACAAATTCGGTAGCATAACATTAACAAAAGTCC
131 CTTTGAACGAAATTTGAGAAAAGTTTTGCCTAACAAATTCGGTAGCATAACATTAACAAAAGTCC
70643724 AAAAAGTTCTTTTCAAAGTAACACAAGCCACAATTTATAGTGAATGCAAGGGATAGCCGAATAGG
196 AAAAAGTTCTTTTCAAAGTAACACAAGCCACAATTTATAGTGAATGCAAGGGATAGCCGAATAGG
70643789 CTCTTGAGGTAGCTAAATGGTTGCTGAAAATTCCAGAATTTTTGATGAAGCTTCCTTGAAGTTTC
261 CTCTTGAGGTAGCTAAATGGTTGCTGAAAATTCCAGAATTTTTGATGAAGCTTCCTTGAAGTTTC
70643854 TTGTGCATGG
326 TTGTGCATGG
70643864 A
1 A
70643865 GAATGGTAAG
Statistics
Matches: 331, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
335 331 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (335 bp):
AAACCTCGACCCACTATCTAACAAGATAGGAACCTAGGTATGTTTGAACGCCACACTACGAGTAG
TGATAAGTTCGATTTCGACAAAGAACAACGGTTGACACACTAGAACACTAGGAAGCCAATCGAAT
CTTTGAACGAAATTTGAGAAAAGTTTTGCCTAACAAATTCGGTAGCATAACATTAACAAAAGTCC
AAAAAGTTCTTTTCAAAGTAACACAAGCCACAATTTATAGTGAATGCAAGGGATAGCCGAATAGG
CTCTTGAGGTAGCTAAATGGTTGCTGAAAATTCCAGAATTTTTGATGAAGCTTCCTTGAAGTTTC
TTGTGCATGG
Found at i:70646614 original size:29 final size:29
Alignment explanation
Indices: 70646581--70646637 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
70646571 ATAACCAAAC
*
70646581 CTACAAAAACTTTATATCCATAAACCCAA
1 CTACAAAAACTTCATATCCATAAACCCAA
*
70646610 CTACATAAACTTCATATCCATAAACCCA
1 CTACAAAAACTTCATATCCATAAACCCA
70646638 TCTTTGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.25
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAA
Found at i:70652685 original size:27 final size:27
Alignment explanation
Indices: 70652652--70652784 Score: 167
Period size: 27 Copynumber: 4.9 Consensus size: 27
70652642 CTAAATTGAC
* *
70652652 AAAATGACTATTTTACCCCTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
*
70652679 AAAATGACTATTTTGCCCTTATATGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
*
70652706 AAAATGACTATTTTGCTCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* * *
70652733 AAAATGACTGTTTTGCACTTTTGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* * * *
70652760 AAGATGATTGTTTTGCCCCTATGTG
1 AAAATGACTATTTTGCCCTTATGTG
70652785 AGGTATTTAT
Statistics
Matches: 93, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATGTGGT
Found at i:70662218 original size:34 final size:33
Alignment explanation
Indices: 70662147--70662245 Score: 101
Period size: 34 Copynumber: 2.9 Consensus size: 33
70662137 ATATGCATTT
* **
70662147 CTGATACTG-TATTGAATTGGGCTAAGGCTCATG
1 CTGATACTGCTATTGAA-TGGGCTAAGGCCCACA
*
70662180 CTGATACTGCTACTGTAATGGGCTAAGGCCCACA
1 CTGATACTGCTATTG-AATGGGCTAAGGCCCACA
* * *
70662214 CTGATAATGCGATTGATATGGGCTTAGGCCCA
1 CTGATACTGCTATTGA-ATGGGCTAAGGCCCA
70662246 GATTGTTCAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
33 10 0.18
34 43 0.78
35 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (33 bp):
CTGATACTGCTATTGAATGGGCTAAGGCCCACA
Found at i:70664141 original size:27 final size:27
Alignment explanation
Indices: 70664100--70664218 Score: 123
Period size: 27 Copynumber: 4.4 Consensus size: 27
70664090 TGGATAAGTT
**
70664100 GTAGAATTATTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
70664127 GTAGAATTACCGAAATATTCC-TATAGG
1 GTAGAATTACCGAAATA-CCCTTGTAGG
* * * *
70664154 ATAAAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
70664181 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
70664208 GTAAAATTACC
1 GTAGAATTACC
70664219 ATTTTGCCCC
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.03
27 70 0.95
28 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:70664911 original size:27 final size:26
Alignment explanation
Indices: 70664871--70664922 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70664861 CTCGCTGCAA
* *
70664871 TCTGGTGGCCTCGTCACGTATATCTGT
1 TCTGGTGACCTCGTCAC-AATATCTGT
*
70664898 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGTCACAATATCTG
70664923 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (26 bp):
TCTGGTGACCTCGTCACAATATCTGT
Found at i:70664990 original size:26 final size:26
Alignment explanation
Indices: 70664961--70665019 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
70664951 CCACATATAT
*
70664961 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGT-GACTAGCCACA
* *
70664987 ATATCTGTATCTGGTGACTTGTCACA
1 ATATCTGTATCTGGTGACTAGCCACA
70665013 ATATCTG
1 ATATCTG
70665020 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
ATATCTGTATCTGGTGACTAGCCACA
Found at i:70671607 original size:27 final size:27
Alignment explanation
Indices: 70671566--70671657 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
70671556 TGGATAAGTT
** *
70671566 GTAGAATTATTGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
70671593 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
70671620 ATAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
70671647 GTAAAATTACC
1 GTAGAATTACC
70671658 ATTTTGCCCT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:70672354 original size:27 final size:26
Alignment explanation
Indices: 70672310--70672361 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70672300 CTAGCTGCAA
*
70672310 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
70672337 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
70672362 GCATCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:70678149 original size:30 final size:30
Alignment explanation
Indices: 70678114--70678174 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
70678104 TTTCCAAGCC
*
70678114 TAGGGGCAAAATCATAATTTTGCAAAGGTT
1 TAGGGGCAAAATCATAATTTTGCAAAAGTT
**
70678144 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAATCATAATTTTGCAAAAGTT
70678174 T
1 T
70678175 GAGTTAGGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAATCATAATTTTGCAAAAGTT
Found at i:70678807 original size:22 final size:22
Alignment explanation
Indices: 70678779--70678823 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
70678769 GTAAGACCAC
*
70678779 ATCAAGATGTGGCATTGGCACT
1 ATCAAGATGTGGCATTAGCACT
70678801 ATCAAGATGTGGCATTAGCACT
1 ATCAAGATGTGGCATTAGCACT
70678823 A
1 A
70678824 AGACAAGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (22 bp):
ATCAAGATGTGGCATTAGCACT
Found at i:70678943 original size:54 final size:54
Alignment explanation
Indices: 70678875--70679082 Score: 242
Period size: 54 Copynumber: 3.9 Consensus size: 54
70678865 TTTGTAAGAT
* *
70678875 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
70678929 AAGGAAATCGTGTAAGACCATGTCAAGACATGGCATTGATAAGTTAATATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * *
70678984 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAA-TT-TATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGAT-AAGTTCTATAAGGC
* * * *
70679037 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
70679083 AAAAAGGAAA
Statistics
Matches: 131, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
52 6 0.05
53 40 0.31
54 41 0.31
55 38 0.29
56 6 0.05
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:70679064 original size:108 final size:109
Alignment explanation
Indices: 70678883--70679081 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 109
70678873 ATAAGGATAT
* **
70678883 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCGTGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
*
70678948 ATGTCAAGACATGGCATTGATAAGTTAATATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTAATATAAGGCAAAGGTCC
* *
70678992 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAA-TT-TATAAGGCAAGGATACCACGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGAT-AAGTTCTATAAGGCAAGGAAACCACGTAAGAC
*
70679055 CATGTCAAGACATGGCAATGGTAAGTT
65 CATGTCAAGACATGGCAATGATAAGTT
70679082 CAAAAAGGAA
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
108 47 0.57
109 33 0.40
110 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTAATATAAGGCAAAGGTCC
Found at i:70685324 original size:22 final size:22
Alignment explanation
Indices: 70685296--70685340 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
70685286 GTAAGACCAC
*
70685296 ATCAAGATGTGGCATTGGCACT
1 ATCAAGATGTGGAATTGGCACT
70685318 ATCAAGATGTGGAATTGGCACT
1 ATCAAGATGTGGAATTGGCACT
70685340 A
1 A
70685341 AGACAAGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (22 bp):
ATCAAGATGTGGAATTGGCACT
Found at i:70685518 original size:55 final size:53
Alignment explanation
Indices: 70685391--70685596 Score: 252
Period size: 53 Copynumber: 3.8 Consensus size: 53
70685381 TTGGTAAGAT
* *
70685391 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTATAAGGC
* * * *
70685444 AAGGAAATCATATAAGACCATGTCAAGACATGGCATTGATAAGTTAATATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT--TATAAGGC
* * * *
70685499 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTTATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTATAAGGC
* * * *
70685552 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT
70685597 CAAAAAGGAA
Statistics
Matches: 131, Mismatches: 18, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
52 4 0.03
53 83 0.63
55 40 0.31
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTATAAGGC
Found at i:70685526 original size:108 final size:108
Alignment explanation
Indices: 70685399--70685621 Score: 324
Period size: 108 Copynumber: 2.1 Consensus size: 108
70685389 ATAAGGATAT
* *
70685399 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTATAAGGCAAGGAAATCATATAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTATAAGGCAAGGAAACCACATAAGACCA
* *
70685464 TGTCAAGACATGGCATTGATAAGTT-AATATAAGGCAAAGG-TCC
66 TGTCAAGACATGGCAATGATAAGTTCAA-A-AAGGAAAAGGTTCC
* * * *
70685507 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTTATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTATAAGGCAAGGAAACCACATAAGACCA
*
70685572 TGTCAAGACATGGCAATGGTAAGTTCAAAAAGGAAAAGGTTCC
66 TGTCAAGACATGGCAATGATAAGTTCAAAAAGGAAAAGGTTCC
*
70685615 CAAGTAA
1 CATGTAA
70685622 TCCAAAGAGT
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
107 9 0.09
108 92 0.89
109 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTATAAGGCAAGGAAACCACATAAGACCA
TGTCAAGACATGGCAATGATAAGTTCAAAAAGGAAAAGGTTCC
Found at i:70690414 original size:30 final size:30
Alignment explanation
Indices: 70690380--70690476 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
70690370 TAAACTAAAA
70690380 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
70690410 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
70690440 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
70690470 TGAGCTA
1 TGAGCTA
70690477 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:70692654 original size:30 final size:30
Alignment explanation
Indices: 70692583--70692665 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
70692573 CTTTTGTTTC
* *
70692583 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
70692614 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
70692643 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
70692666 GATTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:70692656 original size:12 final size:12
Alignment explanation
Indices: 70692641--70692672 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
70692631 TTTTTCAATC
70692641 TCATTTTCTTTT
1 TCATTTTCTTTT
70692653 TCATTTTCTTTT
1 TCATTTTCTTTT
*
70692665 TGATTTTC
1 TCATTTTC
70692673 AAAGGCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.16, G:0.03, T:0.72
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:70692744 original size:5 final size:5
Alignment explanation
Indices: 70692734--70692790 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
70692724 CTCTTGCCTC
*
70692734 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
70692781 TCTTT TCTTT
1 TCTTT TCTTT
70692791 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:70692774 original size:15 final size:14
Alignment explanation
Indices: 70692734--70692790 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
70692724 CTCTTGCCTC
*
70692734 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
70692749 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
70692764 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
70692781 TCTTTTCTTT
1 TCTTTTCTTT
70692791 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:70692791 original size:21 final size:21
Alignment explanation
Indices: 70692734--70692801 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
70692724 CTCTTGCCTC
* *
70692734 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
70692755 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
70692776 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
70692796 CTCTTT
1 -TCTTT
70692802 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:70693715 original size:11 final size:12
Alignment explanation
Indices: 70693699--70693742 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
70693689 TAAAACACCC
*
70693699 TTTTTTTCAGAT
1 TTTTTTTCAAAT
70693711 TTTTTTTCAAATT
1 TTTTTTTCAAA-T
*
70693724 TTTTTTTCGAAT
1 TTTTTTTCAAAT
70693736 TTTTTTT
1 TTTTTTT
70693743 AACTTGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 18 0.62
13 11 0.38
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.73
Consensus pattern (12 bp):
TTTTTTTCAAAT
Found at i:70697061 original size:30 final size:30
Alignment explanation
Indices: 70697027--70697122 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
70697017 TAAACTAAAA
70697027 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
70697057 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* * *
70697087 TGAGCTAAGGTTTGGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
70697117 TGAGCT
1 TGAGCT
70697123 TGGTTTAGCT
Statistics
Matches: 48, Mismatches: 15, Indels: 6
0.70 0.22 0.09
Matches are distributed among these distances:
29 2 0.04
30 40 0.83
31 6 0.12
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:70699735 original size:292 final size:292
Alignment explanation
Indices: 70699211--70699794 Score: 1168
Period size: 292 Copynumber: 2.0 Consensus size: 292
70699201 AGGTTGCACG
70699211 AGCCACACGAGACGACTGTGGACCTACTGTTGGGTTGGTAAGTACATCTAGACCCTAATTTATGT
1 AGCCACACGAGACGACTGTGGACCTACTGTTGGGTTGGTAAGTACATCTAGACCCTAATTTATGT
70699276 TATGACTGTTATAGCCCTATGAGGTAAAAGATGGATATATTTGATGGTTGAGCATGCCATCTTTA
66 TATGACTGTTATAGCCCTATGAGGTAAAAGATGGATATATTTGATGGTTGAGCATGCCATCTTTA
70699341 TTGTATGAACATTTATATTATGTTGCATTGCATGGGGTGGGATATATGATATTGGAGGAAATGTA
131 TTGTATGAACATTTATATTATGTTGCATTGCATGGGGTGGGATATATGATATTGGAGGAAATGTA
70699406 CTGAAAGGCTATAAGCCTATACTGGCAGCTCTGCTGCAAATACTGTTAGTGCTGAGACCAGTACT
196 CTGAAAGGCTATAAGCCTATACTGGCAGCTCTGCTGCAAATACTGTTAGTGCTGAGACCAGTACT
70699471 ATATTATGAGTGTAGGGATGGGTGGGTCGATT
261 ATATTATGAGTGTAGGGATGGGTGGGTCGATT
70699503 AGCCACACGAGACGACTGTGGACCTACTGTTGGGTTGGTAAGTACATCTAGACCCTAATTTATGT
1 AGCCACACGAGACGACTGTGGACCTACTGTTGGGTTGGTAAGTACATCTAGACCCTAATTTATGT
70699568 TATGACTGTTATAGCCCTATGAGGTAAAAGATGGATATATTTGATGGTTGAGCATGCCATCTTTA
66 TATGACTGTTATAGCCCTATGAGGTAAAAGATGGATATATTTGATGGTTGAGCATGCCATCTTTA
70699633 TTGTATGAACATTTATATTATGTTGCATTGCATGGGGTGGGATATATGATATTGGAGGAAATGTA
131 TTGTATGAACATTTATATTATGTTGCATTGCATGGGGTGGGATATATGATATTGGAGGAAATGTA
70699698 CTGAAAGGCTATAAGCCTATACTGGCAGCTCTGCTGCAAATACTGTTAGTGCTGAGACCAGTACT
196 CTGAAAGGCTATAAGCCTATACTGGCAGCTCTGCTGCAAATACTGTTAGTGCTGAGACCAGTACT
70699763 ATATTATGAGTGTAGGGATGGGTGGGTCGATT
261 ATATTATGAGTGTAGGGATGGGTGGGTCGATT
70699795 TTATCCCCAC
Statistics
Matches: 292, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
292 292 1.00
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.32
Consensus pattern (292 bp):
AGCCACACGAGACGACTGTGGACCTACTGTTGGGTTGGTAAGTACATCTAGACCCTAATTTATGT
TATGACTGTTATAGCCCTATGAGGTAAAAGATGGATATATTTGATGGTTGAGCATGCCATCTTTA
TTGTATGAACATTTATATTATGTTGCATTGCATGGGGTGGGATATATGATATTGGAGGAAATGTA
CTGAAAGGCTATAAGCCTATACTGGCAGCTCTGCTGCAAATACTGTTAGTGCTGAGACCAGTACT
ATATTATGAGTGTAGGGATGGGTGGGTCGATT
Found at i:70699940 original size:34 final size:34
Alignment explanation
Indices: 70699889--70699968 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
70699879 TATTGAATTC
* * * *
70699889 GGCTAAGGCTCATACTGATACTGCTACT-ATAATG
1 GGCTAAGGCCCACACTGATAATGCGACTAAT-ATG
70699923 GGCTAAGGCCCACACTGATAATGCGACTAATATG
1 GGCTAAGGCCCACACTGATAATGCGACTAATATG
*
70699957 GGCTTAGGCCCA
1 GGCTAAGGCCCA
70699969 GACTATTCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 38 0.95
35 2 0.05
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (34 bp):
GGCTAAGGCCCACACTGATAATGCGACTAATATG
Found at i:70703536 original size:30 final size:31
Alignment explanation
Indices: 70703442--70703538 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
70703432 TAAACTAAAA
* *
70703442 TGAGTTAAGCTTTAGCTCGTGAGCT-AAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAAGT
* * * * *
70703472 TGAGCTAAGGCTAAACTCCTAAGCTG-AAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAAGT
*
70703502 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAAGT
70703532 TGAGCTA
1 TGAGCTA
70703539 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
30 49 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (31 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAAGT
Found at i:70705790 original size:29 final size:29
Alignment explanation
Indices: 70705753--70705808 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
70705743 TTGTTTCAAT
*
70705753 TTCT-TTTTTCACTCTCAAATTTCTTTTCC
1 TTCTCTTTTTCAATCTC-AATTTCTTTTCC
*
70705782 TTCTCTTTTTCAATCTCATTTTCTTTT
1 TTCTCTTTTTCAATCTCAATTTCTTTT
70705809 TCATTTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.12, C:0.25, G:0.00, T:0.62
Consensus pattern (29 bp):
TTCTCTTTTTCAATCTCAATTTCTTTTCC
Found at i:70705810 original size:30 final size:30
Alignment explanation
Indices: 70705753--70705821 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
70705743 TTGTTTCAAT
* *
70705753 TTCT-TTTTTCACTCTCAAATTTCTTTTCC
1 TTCTCTTTTTCAATCTCAAATTTCTTTTCA
*
70705782 TTCTCTTTTTCAATCTC-ATTTTCTTTTTCA
1 TTCTCTTTTTCAATCTCAAATTTC-TTTTCA
*
70705812 TTTTCTTTTT
1 TTCTCTTTTT
70705822 GCTTTTCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.12, C:0.23, G:0.00, T:0.65
Consensus pattern (30 bp):
TTCTCTTTTTCAATCTCAAATTTCTTTTCA
Found at i:70705821 original size:18 final size:18
Alignment explanation
Indices: 70705772--70705827 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
70705762 CACTCTCAAA
* *
70705772 TTTC-TTTTCCTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
70705789 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
70705807 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
70705826 TT
1 TT
70705828 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.21, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:70705828 original size:12 final size:12
Alignment explanation
Indices: 70705797--70705821 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70705787 TTTTTCAATC
70705797 TCATTTTCTTTT
1 TCATTTTCTTTT
70705809 TCATTTTCTTTT
1 TCATTTTCTTTT
70705821 T
1 T
70705822 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:70705839 original size:12 final size:12
Alignment explanation
Indices: 70705824--70705854 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
70705814 TTCTTTTTGC
70705824 TTTTCAAAGGCT
1 TTTTCAAAGGCT
70705836 TTTTCAAAGGCT
1 TTTTCAAAGGCT
70705848 TTTTCAA
1 TTTTCAA
70705855 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:70705942 original size:15 final size:14
Alignment explanation
Indices: 70705902--70705957 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 14
70705892 CTCTTGCCTC
*
70705902 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
70705917 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
70705932 TCTTTTGCTTTTTCT
1 TCTTTT-CTTTTTCT
*
70705947 TTTCTTTCTTT
1 TCT-TTTCTTT
70705958 ATTTTCTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 4 0.11
15 19 0.53
16 13 0.36
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:70705955 original size:21 final size:21
Alignment explanation
Indices: 70705902--70705957 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
70705892 CTCTTGCCTC
*
70705902 TCTTTTCTTT-TTATTTCATTT
1 TCTTTTCTTTCTT-TTGCATTT
*
70705923 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCT-TTCTTTTGCATTT
70705944 TCTTTTCTTTCTTT
1 TCTTTTCTTTCTTT
70705958 ATTTTCTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 26 0.87
22 3 0.10
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (21 bp):
TCTTTTCTTTCTTTTGCATTT
Found at i:70708521 original size:30 final size:30
Alignment explanation
Indices: 70708487--70708583 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
70708477 TAAACTAAAA
70708487 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
70708517 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
70708547 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
70708577 TGAGCTA
1 TGAGCTA
70708584 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:70719771 original size:24 final size:24
Alignment explanation
Indices: 70719739--70719903 Score: 224
Period size: 24 Copynumber: 6.9 Consensus size: 24
70719729 TCGGTCAAGG
* *
70719739 AAATTCGCACACATAGTGCCATGC
1 AAATCCGCACACATAGTGCCATTC
* * *
70719763 TAACCCGCACACAGAGTGCC-TTGC
1 AAATCCGCACACATAGTGCCATT-C
* *
70719787 TAATCCGCACACGTAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
*
70719811 AAATTCGCACACATAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
*
70719835 AAATCCGCACACATAGTCCCATTC
1 AAATCCGCACACATAGTGCCATTC
*
70719859 AAATCCGCACACATAGTGCCATTT
1 AAATCCGCACACATAGTGCCATTC
70719883 AAATCCGCACACATAGTGCCA
1 AAATCCGCACACATAGTGCCA
70719904 ATGTCATTTC
Statistics
Matches: 124, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 1 0.01
24 121 0.98
25 2 0.02
ACGTcount: A:0.32, C:0.33, G:0.15, T:0.21
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATTC
Done.