Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 24 of 345
Found at i:7905038 original size:48 final size:48
Alignment explanation
Indices: 7904965--7905077 Score: 136
Period size: 48 Copynumber: 2.4 Consensus size: 48
7904955 CCATGTTAAC
* ** * * *
7904965 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCTAAT
1 CCGCACACATAGTGCCATACAAATTCACACACATAATGACATTCAAAT
* *
7905013 CCGCACACATAGTGCCATACAAATTCGCACACATAATGCCATTCAAAT
1 CCGCACACATAGTGCCATACAAATTCACACACATAATGACATTCAAAT
* *
7905061 TCGCACACATAATGCCA
1 CCGCACACATAGTGCCA
7905078 AAATCATTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.25
Consensus pattern (48 bp):
CCGCACACATAGTGCCATACAAATTCACACACATAATGACATTCAAAT
Found at i:7906274 original size:17 final size:17
Alignment explanation
Indices: 7906252--7906285 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7906242 CCCTACTTAA
*
7906252 TATATTATAACTTATTT
1 TATATTATAACATATTT
7906269 TATATTATAACATATTT
1 TATATTATAACATATTT
7906286 CAATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:7911796 original size:18 final size:18
Alignment explanation
Indices: 7911769--7911820 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
7911759 TTGTTGTATC
*
7911769 GAGCCAGAGCTTGAGCCT
1 GAGCCTGAGCTTGAGCCT
* *
7911787 GAGCCTGAGCCTGTGCCT
1 GAGCCTGAGCTTGAGCCT
*
7911805 GAGCTTGAGCTTGAGC
1 GAGCCTGAGCTTGAGC
7911821 TTCAGCCTCG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (18 bp):
GAGCCTGAGCTTGAGCCT
Found at i:7911822 original size:6 final size:6
Alignment explanation
Indices: 7911769--7911820 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
7911759 TTGTTGTATC
* * * * *
7911769 GAGCCA GAGCTT GAGCCT GAGCCT GAGCCT GTGCCT GAGCTT GAGCTT
1 GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT GAGCCT
7911817 GAGC
1 GAGC
7911821 TTCAGCCTCG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (6 bp):
GAGCCT
Found at i:7914203 original size:6 final size:6
Alignment explanation
Indices: 7914183--7914219 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
7914173 AAAATTAAAT
*
7914183 AAAGCAA AAAAAA AAAGAA AAAGAA AAAGAA AAAGAA
1 AAAG-AA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
7914220 GAGATTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
6 25 0.89
7 3 0.11
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:7916025 original size:88 final size:88
Alignment explanation
Indices: 7915876--7916048 Score: 274
Period size: 88 Copynumber: 2.0 Consensus size: 88
7915866 AAATTGAAAG
* *
7915876 CTATTTGAAAGAAAATATATTTCGATGCGTTCAATAGTCGGTGGAAACGTTTTAAAATATAAACT
1 CTATTTGAAAGAAAATATATTTCGATACGTTCAATAGTCGGTGAAAACGTTTTAAAATATAAACT
7915941 TTTTGATACGTGGTGATTAAAAA
66 TTTTGATACGTGGTGATTAAAAA
* * * * * *
7915964 CTATTTGAAAGGAAATATATTTTGATACGTTCGATGGTCGGTGAAAACGTTTTAAACTATAAATT
1 CTATTTGAAAGAAAATATATTTCGATACGTTCAATAGTCGGTGAAAACGTTTTAAAATATAAACT
7916029 TTTTGATACGTGGTGATTAA
66 TTTTGATACGTGGTGATTAA
7916049 TGTAAGAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 77 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (88 bp):
CTATTTGAAAGAAAATATATTTCGATACGTTCAATAGTCGGTGAAAACGTTTTAAAATATAAACT
TTTTGATACGTGGTGATTAAAAA
Found at i:7920576 original size:29 final size:29
Alignment explanation
Indices: 7920516--7920577 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
7920506 AATTTATTAT
*
7920516 TTTTCTAACGTTTAGTGATTAAGTTGTAAC
1 TTTTCGAACGTTTAGTGATT-AGTTGTAAC
7920546 TTTTCGAA-GTTTAGTGATT-GTTGGTATAC
1 TTTTCGAACGTTTAGTGATTAGTT-GTA-AC
7920575 TTT
1 TTT
7920578 ACCCAAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 3 0.10
28 3 0.10
29 16 0.55
30 7 0.24
ACGTcount: A:0.23, C:0.08, G:0.19, T:0.50
Consensus pattern (29 bp):
TTTTCGAACGTTTAGTGATTAGTTGTAAC
Found at i:7923854 original size:45 final size:45
Alignment explanation
Indices: 7923790--7923881 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
7923780 TATACTGAAG
*
7923790 AATAGCCTTTATGAACACTTCTTTCCCACATTGGGGTAGATGCCT
1 AATAGCCTTTATGAACACTTCTTTCCCACATTGAGGTAGATGCCT
7923835 AATAGCCTTTATGAACACTTCTTTCCCACATTGAGGTAGATGCCT
1 AATAGCCTTTATGAACACTTCTTTCCCACATTGAGGTAGATGCCT
7923880 AA
1 AA
7923882 CACTCTAATT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (45 bp):
AATAGCCTTTATGAACACTTCTTTCCCACATTGAGGTAGATGCCT
Found at i:7924216 original size:21 final size:21
Alignment explanation
Indices: 7924190--7924231 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7924180 ACCCCAAACT
*
7924190 CTCAAACCTTTTTACT-TTTCC
1 CTCAAAAC-TTTTACTCTTTCC
7924211 CTCAAAACTTTTACTCTTTCC
1 CTCAAAACTTTTACTCTTTCC
7924232 TACTTTTCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.45
Consensus pattern (21 bp):
CTCAAAACTTTTACTCTTTCC
Found at i:7929967 original size:15 final size:16
Alignment explanation
Indices: 7929939--7929972 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
7929929 AATGGGAATC
7929939 ATCACTTGCTTTTTCT
1 ATCACTTGCTTTTTCT
7929955 ATCACTT-CTTTTTCT
1 ATCACTTGCTTTTTCT
7929970 ATC
1 ATC
7929973 TTCTTTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.15, C:0.26, G:0.03, T:0.56
Consensus pattern (16 bp):
ATCACTTGCTTTTTCT
Found at i:7930967 original size:7 final size:7
Alignment explanation
Indices: 7930955--7930979 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7930945 TCATTAATTT
7930955 CAGTGTC
1 CAGTGTC
7930962 CAGTGTC
1 CAGTGTC
7930969 CAGTGTC
1 CAGTGTC
7930976 CAGT
1 CAGT
7930980 TTTGAACAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.28, G:0.28, T:0.28
Consensus pattern (7 bp):
CAGTGTC
Found at i:7933768 original size:26 final size:27
Alignment explanation
Indices: 7933718--7933768 Score: 70
Period size: 25 Copynumber: 1.9 Consensus size: 27
7933708 TTTGGCTTGT
*
7933718 ATAAAAAATTAAATATTTTTAATAAAA
1 ATAAAAAATTAAATATTTTAAATAAAA
7933745 ATAAAAAA-T-AATATTTTAATATAA
1 ATAAAAAATTAAATATTTTAA-ATAA
7933769 GAAAATGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 5 0.23
27 8 0.36
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
ATAAAAAATTAAATATTTTAAATAAAA
Found at i:7937451 original size:64 final size:64
Alignment explanation
Indices: 7937350--7937480 Score: 262
Period size: 64 Copynumber: 2.0 Consensus size: 64
7937340 TCGCCCATGT
7937350 ACATATAAAGAAGGAATTGCTTTCTAAGAAAATATCACTATAAATAGGTTTAGTAGCATAGCAA
1 ACATATAAAGAAGGAATTGCTTTCTAAGAAAATATCACTATAAATAGGTTTAGTAGCATAGCAA
7937414 ACATATAAAGAAGGAATTGCTTTCTAAGAAAATATCACTATAAATAGGTTTAGTAGCATAGCAA
1 ACATATAAAGAAGGAATTGCTTTCTAAGAAAATATCACTATAAATAGGTTTAGTAGCATAGCAA
7937478 ACA
1 ACA
7937481 ACCAAAATCT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.46, C:0.11, G:0.15, T:0.27
Consensus pattern (64 bp):
ACATATAAAGAAGGAATTGCTTTCTAAGAAAATATCACTATAAATAGGTTTAGTAGCATAGCAA
Found at i:7937963 original size:5 final size:5
Alignment explanation
Indices: 7937953--7937985 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7937943 AGATATTTTG
*
7937953 AAAAT AAAAT AAAAT GAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7937986 GAGCACACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7943185 original size:88 final size:88
Alignment explanation
Indices: 7943036--7943205 Score: 277
Period size: 88 Copynumber: 1.9 Consensus size: 88
7943026 CTAAACAATG
** * *
7943036 GTGCCACTTGATTGGACTAACTTGCTATGAGTATGTTTCTTGGATTACTAGGTAATGGTCACAAC
1 GTGCCACTTGATTGGACTAACCCGCTATGAGTATGTTTCTTAGATTACTAGGTAATAGTCACAAC
7943101 ATTATTCGCAGTGATTATCATGA
66 ATTATTCGCAGTGATTATCATGA
* *
7943124 GTGCCACTTGATTGGACTGACCCGCTATGAGTATGTTTCTTAGATTACTATGTAATAGTCACAAC
1 GTGCCACTTGATTGGACTAACCCGCTATGAGTATGTTTCTTAGATTACTAGGTAATAGTCACAAC
*
7943189 ATTATTCGTAGTGATTA
66 ATTATTCGCAGTGATTA
7943206 CTATATATGA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Consensus pattern (88 bp):
GTGCCACTTGATTGGACTAACCCGCTATGAGTATGTTTCTTAGATTACTAGGTAATAGTCACAAC
ATTATTCGCAGTGATTATCATGA
Found at i:7945724 original size:2 final size:2
Alignment explanation
Indices: 7945717--7945741 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7945707 TAAGATATGA
7945717 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7945742 AATTACTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7946404 original size:1 final size:1
Alignment explanation
Indices: 7946398--7946423 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
7946388 TGACCAAGCC
7946398 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
7946424 CTAAACAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7948001 original size:11 final size:11
Alignment explanation
Indices: 7947985--7948011 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7947975 TTGTGTATAA
7947985 AAAAAAAAAAG
1 AAAAAAAAAAG
7947996 AAAAAAAAAAG
1 AAAAAAAAAAG
7948007 AAAAA
1 AAAAA
7948012 GAACTCCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:7956563 original size:18 final size:17
Alignment explanation
Indices: 7956542--7956583 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
7956532 CTTCCCCCTC
7956542 TTTTTTTT-GGGTAATA
1 TTTTTTTTGGGGTAATA
7956558 TGTTTTTTTGGGGTAATA
1 T-TTTTTTTGGGGTAATA
7956576 TTTTTTTT
1 TTTTTTTT
7956584 CTTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.04
17 14 0.58
18 9 0.38
ACGTcount: A:0.14, C:0.00, G:0.19, T:0.67
Consensus pattern (17 bp):
TTTTTTTTGGGGTAATA
Found at i:7961796 original size:37 final size:39
Alignment explanation
Indices: 7961701--7961798 Score: 103
Period size: 39 Copynumber: 2.6 Consensus size: 39
7961691 AACACACCAG
**
7961701 TTTGGCACCTAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGGCACCTAGTGCCTCATCGGATAAACCGAAGT-ATAA
* * * * *
7961741 ATTGACACC-AGTGTCTCATTGGTTAAACCGAA-T-TAA
1 TTTGGCACCTAGTGCCTCATCGGATAAACCGAAGTATAA
7961777 TTTGGCACCTAGTGCCTCATCG
1 TTTGGCACCTAGTGCCTCATCG
7961799 AATTAATGCG
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
36 10 0.22
37 10 0.22
38 1 0.02
39 18 0.39
40 7 0.15
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (39 bp):
TTTGGCACCTAGTGCCTCATCGGATAAACCGAAGTATAA
Found at i:7962716 original size:53 final size:54
Alignment explanation
Indices: 7962636--7962742 Score: 180
Period size: 53 Copynumber: 2.0 Consensus size: 54
7962626 GCTTTGAACA
7962636 ATTGAAATCCCTAGCTTTGTGTCTTTCTCCTTCCTTCTTTCTCTTTTT-TTTTT
1 ATTGAAATCCCTAGCTTTGTGTCTTTCTCCTTCCTTCTTTCTCTTTTTCTTTTT
* * *
7962689 ATTGAAATCCTTATCTTTGTGTCTTTCTCCTTCCTTCTTTTTCTTTTTCTTTTT
1 ATTGAAATCCCTAGCTTTGTGTCTTTCTCCTTCCTTCTTTCTCTTTTTCTTTTT
7962743 CTTTCTATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
53 45 0.90
54 5 0.10
ACGTcount: A:0.09, C:0.23, G:0.07, T:0.61
Consensus pattern (54 bp):
ATTGAAATCCCTAGCTTTGTGTCTTTCTCCTTCCTTCTTTCTCTTTTTCTTTTT
Found at i:7962818 original size:7 final size:7
Alignment explanation
Indices: 7962806--7962871 Score: 53
Period size: 7 Copynumber: 8.6 Consensus size: 7
7962796 ATTTACTTAT
7962806 TATAATA
1 TATAATA
7962813 TATAATA
1 TATAATA
7962820 TAATATATA
1 T-ATA-ATA
7962829 TACTTAATA
1 TA--TAATA
*
7962838 -ATTAAGA
1 TA-TAATA
7962845 TATAATA
1 TATAATA
7962852 TTATAATA
1 -TATAATA
7962860 TTATAATA
1 -TATAATA
7962868 TATA
1 TATA
7962872 TTTTAACTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
7 21 0.41
8 21 0.41
9 7 0.14
10 2 0.04
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (7 bp):
TATAATA
Found at i:7962833 original size:30 final size:31
Alignment explanation
Indices: 7962793--7962871 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 31
7962783 TTTTGTTTAT
*
7962793 TATATTTACTTATTATAATATATA-ATATAA
1 TATATATACTTATTATAATATATAGATATAA
7962823 TATATATACTTA--ATAAT-TA-AGATATAA
1 TATATATACTTATTATAATATATAGATATAA
*
7962850 TAT-TATA-ATATTATAATATATA
1 TATATATACTTATTATAATATATA
7962872 TTTTAACTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
25 2 0.05
26 5 0.12
27 16 0.38
28 7 0.17
29 1 0.02
30 11 0.26
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (31 bp):
TATATATACTTATTATAATATATAGATATAA
Found at i:7962858 original size:8 final size:8
Alignment explanation
Indices: 7962803--7962868 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
7962793 TATATTTACT
7962803 TATTATAA
1 TATTATAA
7962811 TA-TATAA
1 TATTATAA
*
7962818 TATAAT-A
1 TATTATAA
7962825 TATATACTTAA
1 TAT-TA--TAA
*
7962836 TAAT-TAA
1 TATTATAA
*
7962843 GA-TATAA
1 TATTATAA
7962850 TATTATAA
1 TATTATAA
7962858 TATTATAA
1 TATTATAA
7962866 TAT
1 TAT
7962869 ATATTTTAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
6 1 0.02
7 19 0.41
8 21 0.46
10 2 0.04
11 3 0.07
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (8 bp):
TATTATAA
Found at i:7966611 original size:6 final size:6
Alignment explanation
Indices: 7966602--7966646 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
7966592 TAAGTCTAAG
* *
7966602 AAAATA AAAATA AACATA AAAGTA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
7966647 CAAAACAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:7971887 original size:48 final size:48
Alignment explanation
Indices: 7971828--7972424 Score: 1095
Period size: 48 Copynumber: 12.4 Consensus size: 48
7971818 ATATGTGTGT
* *
7971828 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
* * *
7971876 GGCAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
*
7971924 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
*
7971972 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGA
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
7972020 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
7972068 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
7972116 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
7972164 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
7972212 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
7972260 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
*
7972308 GGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATATGC
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
* * *
7972356 GGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATATGT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
7972404 GGTAAAGCCGAATGGCTAGTG
1 GGTAAAGCCGAATGGCTAGTG
7972425 ATTCGGCTAG
Statistics
Matches: 538, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 538 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (48 bp):
GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGC
Found at i:7972690 original size:36 final size:37
Alignment explanation
Indices: 7972594--7972695 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
7972584 GGAAATATAT
*
7972594 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
7972631 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
7972668 TCCGGGTAAGA-CCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
7972696 GGACTATTCG
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
36 16 0.26
37 46 0.74
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:7974667 original size:13 final size:13
Alignment explanation
Indices: 7974649--7974682 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
7974639 CTCGGTAGGG
7974649 ACACGCCCGTGGC
1 ACACGCCCGTGGC
7974662 ACACGCCCGTGGC
1 ACACGCCCGTGGC
7974675 ACACGCCC
1 ACACGCCC
7974683 ATGTTTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.50, G:0.26, T:0.06
Consensus pattern (13 bp):
ACACGCCCGTGGC
Found at i:7982611 original size:38 final size:38
Alignment explanation
Indices: 7982550--7982662 Score: 145
Period size: 38 Copynumber: 2.9 Consensus size: 38
7982540 ATTTGATGTG
*
7982550 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
7982590 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * *
7982628 TATCAGGGATAAATCCCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
7982663 TTATATTCGG
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 53 0.80
39 5 0.08
40 8 0.12
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:7982663 original size:38 final size:38
Alignment explanation
Indices: 7982566--7982668 Score: 152
Period size: 38 Copynumber: 2.7 Consensus size: 38
7982556 GGCTTAAAGA
** * *
7982566 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
7982604 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
* *
7982642 CCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
7982669 TCGGGCCTTC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
Found at i:7982714 original size:43 final size:43
Alignment explanation
Indices: 7982666--7983087 Score: 727
Period size: 43 Copynumber: 9.8 Consensus size: 43
7982656 GCTGGTATTA
* *
7982666 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* ** *
7982709 TATTCGGGCCTTCGTTCCTAGCAGGCTTTGTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* *
7982752 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
*
7982795 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* *
7982838 TATTCTGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
7982881 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
7982924 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
7982967 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
7983010 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* *
7983053 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCG
7983088 ATGAAATGAT
Statistics
Matches: 363, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 363 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
Found at i:7984491 original size:43 final size:43
Alignment explanation
Indices: 7984442--7984528 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
7984432 TATTATCCCT
7984442 ATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAG
1 ATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAG
*
7984485 ATTCAAGACTAATAACGTCTAATCTCTAGATTGAATAATTGAG
1 ATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAG
7984528 A
1 A
7984529 CCTTTCTCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (43 bp):
ATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGAG
Found at i:7988422 original size:40 final size:40
Alignment explanation
Indices: 7988342--7988536 Score: 302
Period size: 40 Copynumber: 4.9 Consensus size: 40
7988332 CGGTATAATA
* * *
7988342 CCAGCTCGTAGCCTGCGGGTCTCT-AGCCCGGATAACATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
* *
7988381 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATAAAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
* *
7988421 CCAGCACAAAGCCTGCGGGTTTTTAAGCCCGGATAACATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
*
7988461 CCAGCACGAAGCCTGCAGGTCTTTAAGCCCGGATAACATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
*
7988501 CCAGCACGAAGCCTGCGGGTCTTTAAGCCTGGATAA
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAA
7988537 TACCTCAAGT
Statistics
Matches: 141, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 21 0.15
40 120 0.85
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
Found at i:8006089 original size:46 final size:46
Alignment explanation
Indices: 8005941--8006209 Score: 215
Period size: 47 Copynumber: 5.7 Consensus size: 46
8005931 GGTAAAGTAT
* * * *
8005941 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATATC-AAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TCGTCTCGAGGC
** * * * *
8005988 CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTTGTA-AC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCTCG-AGGC
* *
8006036 TGATGCATGTCCCAGACATGTCGTACACTGGCT-TACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCGAGGC
* * * * *
8006082 CGATGCATGTCTCAAACATGTCTTACACTAGCTCTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGAGGC
* * * *
8006128 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGT-CTCGAGGC
*
8006176 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTC
8006210 ACACACCAAT
Statistics
Matches: 181, Mismatches: 32, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
45 2 0.01
46 74 0.41
47 75 0.41
48 28 0.15
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGAGGC
Found at i:8006185 original size:94 final size:94
Alignment explanation
Indices: 8005941--8006209 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 94
8005931 GGTAAAGTAT
* * *
8005941 CGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCATATATCAAGTCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGAGGCCGATG-CATGTCCCAG
* * *
8006004 ACATGGTCTTACACTAACTATCATCTTGTAAC
64 ACAT-GTCTTACACTAGCTCTCATCTTGCAAC
* * * * * *
8006036 TGATG-CATGTCCCAGACAT-GTCGTACACTGGCT-TACGT-CTCGAGGCCGATGCATGTCTCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCAG
*
8006097 ACATGTCTTACACTAGCTCTCGTC-T-CAATGC
64 ACATGTCTTACACTAGCTCTCATCTTGCAA--C
* *
8006128 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
8006193 ATGTCTTACACTAGCTC
66 ATGTCTTACACTAGCTC
8006210 ACACACCAAT
Statistics
Matches: 143, Mismatches: 21, Indels: 21
0.77 0.11 0.11
Matches are distributed among these distances:
90 2 0.01
91 1 0.01
92 22 0.15
93 37 0.26
94 73 0.51
95 8 0.06
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTCTCATCTTGCAAC
Found at i:8008477 original size:12 final size:13
Alignment explanation
Indices: 8008460--8008497 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
8008450 ATCCTGGAAT
8008460 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
8008472 ATTAAGAACACATA
1 ATTAAGAACA-AGA
8008486 ATTAAGAACAAG
1 ATTAAGAACAAG
8008498 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:8016418 original size:13 final size:13
Alignment explanation
Indices: 8016400--8016426 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8016390 CTTGGGATGC
8016400 AACCCGAGCACTA
1 AACCCGAGCACTA
8016413 AACCCGAGCACTA
1 AACCCGAGCACTA
8016426 A
1 A
8016427 CTGTATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.37, G:0.15, T:0.07
Consensus pattern (13 bp):
AACCCGAGCACTA
Found at i:8021898 original size:12 final size:13
Alignment explanation
Indices: 8021881--8021918 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
8021871 ATCCTGGAAT
8021881 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
8021893 ATTAAGAACACATA
1 ATTAAGAACA-AGA
8021907 ATTAAGAACAAG
1 ATTAAGAACAAG
8021919 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:8024166 original size:42 final size:41
Alignment explanation
Indices: 8024060--8024182 Score: 176
Period size: 40 Copynumber: 3.0 Consensus size: 41
8024050 TTTTTAGCGG
* *
8024060 CGCCGCTAAAGAACGAGCATTAGCGGCTCTTTTT-GAAAAA
1 CGCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTAAAAAAA
8024100 CGCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTAAAAAAA
1 CGCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTAAAAAAA
** **
8024141 CGCCGCTAAAAGATTGAGCATTAGCGGCGCTTTACAAAAAAA
1 CGCCGCT-AAAGAACGAGCATTAGCGGCGCTTTTTAAAAAAA
8024183 ATTGCAAAAC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
40 33 0.44
41 12 0.16
42 30 0.40
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (41 bp):
CGCCGCTAAAGAACGAGCATTAGCGGCGCTTTTTAAAAAAA
Found at i:8024533 original size:39 final size:39
Alignment explanation
Indices: 8024489--8024567 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
8024479 GGGTATATGG
8024489 TTCAGGGTTTAAAATATTAAATTTAAATATTGAATTAAT
1 TTCAGGGTTTAAAATATTAAATTTAAATATTGAATTAAT
8024528 TTCAGGGTTTAAAATATTAAATTTAAATATTGAATTAAT
1 TTCAGGGTTTAAAATATTAAATTTAAATATTGAATTAAT
8024567 T
1 T
8024568 ATCATTATAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (39 bp):
TTCAGGGTTTAAAATATTAAATTTAAATATTGAATTAAT
Found at i:8024645 original size:15 final size:14
Alignment explanation
Indices: 8024626--8024674 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
8024616 ACTATTTTAG
*
8024626 GGTTTATAGATTAT
1 GGTTTATGGATTAT
*
8024640 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
*
8024655 GGTTTATGGTTTAT
1 GGTTTATGGATTAT
8024669 GGTTTA
1 GGTTTA
8024675 AGGGTTGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:8024663 original size:7 final size:7
Alignment explanation
Indices: 8024621--8024674 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
8024611 GAGATACTAT
*
8024621 TTTAGGG
1 TTTATGG
*
8024628 TTTATAG
1 TTTATGG
*
8024635 ATTATGGG
1 TTTAT-GG
*
8024643 TTTAGGG
1 TTTATGG
*
8024650 ATTATGG
1 TTTATGG
8024657 TTTATGG
1 TTTATGG
8024664 TTTATGG
1 TTTATGG
8024671 TTTA
1 TTTA
8024675 AGGGTTGGAG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
7 33 0.89
8 4 0.11
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (7 bp):
TTTATGG
Found at i:8025785 original size:7 final size:7
Alignment explanation
Indices: 8025770--8025799 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8025760 AAAATTATAA
8025770 AAAAATT
1 AAAAATT
*
8025777 AAAATTT
1 AAAAATT
8025784 AAAAATT
1 AAAAATT
8025791 AAAAATT
1 AAAAATT
8025798 AA
1 AA
8025800 CATTTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AAAAATT
Found at i:8025795 original size:15 final size:14
Alignment explanation
Indices: 8025754--8025799 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
8025744 TTCATATGAT
*
8025754 AATTTAAAAATTAT
1 AATTTAAAAATTAA
8025768 AA---AAAAATTAA
1 AATTTAAAAATTAA
8025779 AATTTAAAAATTAA
1 AATTTAAAAATTAA
*
8025793 AAATTAA
1 AATTTAA
8025800 CATTTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 10 0.37
14 17 0.63
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AATTTAAAAATTAA
Found at i:8030415 original size:14 final size:15
Alignment explanation
Indices: 8030396--8030428 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
8030386 TATTATTTAA
8030396 TTAAAA-TATATTTT
1 TTAAAATTATATTTT
8030410 TTAAAATTTATATTTT
1 TTAAAA-TTATATTTT
8030426 TTA
1 TTA
8030429 GCGGCATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
16 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTAAAATTATATTTT
Found at i:8030556 original size:43 final size:42
Alignment explanation
Indices: 8030509--8030609 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 42
8030499 AGGTCACGAC
* *
8030509 CTTTAGCAGCATTTTTGAAAAAAGTGTCACTAAAGGTCATAGT
1 CTTTAGCAGCATTTTTGAAAAAAGCGCCACT-AAGGTCATAGT
* * * ** * * *
8030552 CTTTAGCGGCGTTTTGGGGAGAAGCGCCGCTAAGGTCATGGT
1 CTTTAGCAGCATTTTTGAAAAAAGCGCCACTAAGGTCATAGT
8030594 CTTTAGCAGCATTTTT
1 CTTTAGCAGCATTTTT
8030610 TTAAATAAAC
Statistics
Matches: 45, Mismatches: 13, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
42 23 0.51
43 22 0.49
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
CTTTAGCAGCATTTTTGAAAAAAGCGCCACTAAGGTCATAGT
Found at i:8033733 original size:27 final size:26
Alignment explanation
Indices: 8033632--8033743 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
8033622 AGGAAGCGTC
* * *
8033632 CTGGTGGCTATGCCACAAATATCTGATT
1 CTGGTGACTCTGCCAC-ATTATCTG-TT
* *
8033660 -TGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACAT-TATCTGTT
*
8033686 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGACTCTGCCAC-ATTATCTGT-T
*
8033714 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGACTCTGCCACATTATCTGTT
8033740 CTGG
1 CTGG
8033744 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
26 8 0.11
27 50 0.67
28 17 0.23
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGTT
Found at i:8033736 original size:54 final size:54
Alignment explanation
Indices: 8033632--8033743 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
8033622 AGGAAGCGTC
* * *
8033632 CTGGTGGCTATGCCACAAATATCTGATTTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
8033686 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
8033740 CTGG
1 CTGG
8033744 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.68
55 16 0.32
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:8037437 original size:20 final size:20
Alignment explanation
Indices: 8037412--8037449 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8037402 CCTTTTTCTT
*
8037412 AAAAAAGGAACAAAAAAAAA
1 AAAAAAAGAACAAAAAAAAA
*
8037432 AAAAAAAGAAGAAAAAAA
1 AAAAAAAGAACAAAAAAA
8037450 TGGCAGGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.87, C:0.03, G:0.11, T:0.00
Consensus pattern (20 bp):
AAAAAAAGAACAAAAAAAAA
Found at i:8044190 original size:24 final size:24
Alignment explanation
Indices: 8044158--8044226 Score: 111
Period size: 24 Copynumber: 2.9 Consensus size: 24
8044148 ATCAGGAGAC
8044158 GATTTAGGAGTTGATAAGGGATAA
1 GATTTAGGAGTTGATAAGGGATAA
*
8044182 GATTTAGGAGTTGATAAGGGATAG
1 GATTTAGGAGTTGATAAGGGATAA
**
8044206 GATTTAGGAGCAGATAAGGGA
1 GATTTAGGAGTTGATAAGGGA
8044227 GGAAATCTAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.36, C:0.01, G:0.36, T:0.26
Consensus pattern (24 bp):
GATTTAGGAGTTGATAAGGGATAA
Found at i:8045692 original size:28 final size:26
Alignment explanation
Indices: 8045651--8045765 Score: 104
Period size: 28 Copynumber: 4.2 Consensus size: 26
8045641 AGGAAGCGTC
*
8045651 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGAT
*
8045679 CTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTCTGCCAC--AT-TATCTGAT
* *
8045708 CTGGTAGCTCTGCCACGATTATATGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
8045736 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
8045762 CTGG
1 CTGG
8045766 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.07
27 12 0.16
28 34 0.47
29 22 0.30
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:8045717 original size:29 final size:29
Alignment explanation
Indices: 8045651--8045753 Score: 113
Period size: 28 Copynumber: 3.6 Consensus size: 29
8045641 AGGAAGCGTC
* *
8045651 CTGGTGGCTATGCCACAAAT-TATCTGAT
1 CTGGTGGCTCTGCCACATATATATCTGAT
*
8045679 CTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTCTGCCACATATATATCTGAT
* *
8045708 CTGGTAGCTCTGCCACGAT-TATATGT-AT
1 CTGGTGGCTCTGCCAC-ATATATATCTGAT
* *
8045736 CTGGTGACTCTGTCACAT
1 CTGGTGGCTCTGCCACAT
8045754 TATCTGTTCT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 2 0.03
28 32 0.50
29 28 0.44
30 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (29 bp):
CTGGTGGCTCTGCCACATATATATCTGAT
Found at i:8045739 original size:57 final size:54
Alignment explanation
Indices: 8045651--8045774 Score: 133
Period size: 57 Copynumber: 2.2 Consensus size: 54
8045641 AGGAAGCGTC
* * *
8045651 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTAGCTATGCCACAAATTATATGATCTGGTGACTCTGCCAC--AT-TATCTGTT
* * *
8045708 CTGGTAGCTCTGCCAC-GATTATATGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTAGCTATGCCACAAATTATATG-ATCTGGTGACTCTGCCACATTATCTGTT
* *
8045762 CTGGCAGCCATGC
1 CTGGTAGCTATGC
8045775 TACATATTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
54 18 0.32
55 2 0.04
56 7 0.12
57 30 0.53
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
CTGGTAGCTATGCCACAAATTATATGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:8051620 original size:26 final size:26
Alignment explanation
Indices: 8051582--8051634 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8051572 AAAGATAGAT
8051582 AATAGCAACATAAGCATAATATCAGA
1 AATAGCAACATAAGCATAATATCAGA
*
8051608 AATAGCAATATAAGCATAATATCAGA
1 AATAGCAACATAAGCATAATATCAGA
8051634 A
1 A
8051635 GAGAGGGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (26 bp):
AATAGCAACATAAGCATAATATCAGA
Found at i:8067133 original size:24 final size:24
Alignment explanation
Indices: 8067106--8067152 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
8067096 ATATGTTGAC
8067106 ATTCAAATCAGCACACATAGTGCT
1 ATTCAAATCAGCACACATAGTGCT
* *
8067130 ATTCAACTCCGCACACATAGTGC
1 ATTCAAATCAGCACACATAGTGC
8067153 CATACTGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (24 bp):
ATTCAAATCAGCACACATAGTGCT
Found at i:8090973 original size:23 final size:23
Alignment explanation
Indices: 8090947--8090991 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8090937 TGGGTATGTG
*
8090947 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
8090970 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
8090992 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:8098276 original size:347 final size:352
Alignment explanation
Indices: 8097636--8098313 Score: 1116
Period size: 347 Copynumber: 1.9 Consensus size: 352
8097626 AACAAGTTGA
* * *
8097636 ATGAATAAATCGTCCGATTTGGAGCCAGAATAACAAGTAAAGTCTAGGTGGATTTTTCCTTAGGT
1 ATGAATAAATCATCCGATTCGGAGCCAGAATAACAAGTAAAGTCTAGGTGGATTCTTCCTTAGGT
** **
8097701 ATTGTCTTAAGTCAATCAATTTTTCCCAAAAGCAATTTCCCAATTCTTTTCTCTGTGCGTTCTTA
66 ATTGTCTTAAGTCAATCAATTTTTCCCAAAAGCAATCCCCCAATTCTTTTCTCTGTGAATTCTTA
* * *
8097766 GTTTAGATAATTAGTTAGTTAAAACATAAACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAG
131 GTTTAGATAATTAGTTAGTTAAAACATAAACCCCATTATTCTTAGGCTAGATAATAAAAAGACAA
* *
8097831 TCATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCGGTCTTGCTAAAACTATACTATTGT
196 TCATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCAGTCTTGCTAAAACTATACTACTGT
*
8097896 TCGATAGGTACACTTGCCTACATCGTAATAATAGTTAGTTT-AAGAACGAGTAATTATAAATATT
261 TCGATAGGTACACTTGCCTACATCGTAATAATAGTTAGTTTCAAGAACGAGTAATTATAAATATA
8097960 TAAAACCTATCACGAAATCATGCGATC
326 TAAAACCTATCACGAAATCATGCGATC
* *
8097987 ATGAATAAATCATCCGATTCGGAGTCAGAATAACAAGTGAAGTCTAGGTGGATTCTTCCTTAGGT
1 ATGAATAAATCATCCGATTCGGAGCCAGAATAACAAGTAAAGTCTAGGTGGATTCTTCCTTAGGT
* *
8098052 ATTGTCTTAATTCAATC-A-TTTT-CCAAAAGTAATCCCCCAATTCTATTT-TCTGTGAATTCTT
66 ATTGTCTTAAGTCAATCAATTTTTCCCAAAAGCAATCCCCCAATTCT-TTTCTCTGTGAATTCTT
8098113 AGTTTAGATAATTAGTTAGTTAAAACA-AAACCCCATTATTCTTAGGCTAGATAATAAAAAGACA
130 AGTTTAGATAATTAGTTAGTTAAAACATAAACCCCATTATTCTTAGGCTAGATAATAAAAAGACA
* *
8098177 ATCATTACTATTACTTTTAGTTCTTTTGGGTTCGACAATCCAGTCTTGCTAAAACTATACTACTG
195 ATCATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCAGTCTTGCTAAAACTATACTACTG
* *
8098242 TTCGATAGGTACACTTGCCTACATCGTGATAATAGTTAGTTTCAAGAACGATTAATTATAAATAT
260 TTCGATAGGTACACTTGCCTACATCGTAATAATAGTTAGTTTCAAGAACGAGTAATTATAAATAT
8098307 ATAAAAC
325 ATAAAAC
8098314 TTACCCGTCA
Statistics
Matches: 304, Mismatches: 21, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
347 136 0.45
348 84 0.28
349 7 0.02
350 1 0.00
351 76 0.25
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (352 bp):
ATGAATAAATCATCCGATTCGGAGCCAGAATAACAAGTAAAGTCTAGGTGGATTCTTCCTTAGGT
ATTGTCTTAAGTCAATCAATTTTTCCCAAAAGCAATCCCCCAATTCTTTTCTCTGTGAATTCTTA
GTTTAGATAATTAGTTAGTTAAAACATAAACCCCATTATTCTTAGGCTAGATAATAAAAAGACAA
TCATTACTAGTACTTTTAGTTCCTTTGGGTTCGACAATCCAGTCTTGCTAAAACTATACTACTGT
TCGATAGGTACACTTGCCTACATCGTAATAATAGTTAGTTTCAAGAACGAGTAATTATAAATATA
TAAAACCTATCACGAAATCATGCGATC
Found at i:8099217 original size:6 final size:6
Alignment explanation
Indices: 8099206--8099231 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8099196 TAAATAAAAG
8099206 AAAATT AAAATT AAAATT AAAATT AA
1 AAAATT AAAATT AAAATT AAAATT AA
8099232 TAAAATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:8101144 original size:10 final size:10
Alignment explanation
Indices: 8101129--8101160 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
8101119 AAGAGGAAGG
8101129 GGGAAAGAAA
1 GGGAAAGAAA
8101139 GGGAAAGAAA
1 GGGAAAGAAA
8101149 GAGGAAAGAAA
1 G-GGAAAGAAA
8101160 G
1 G
8101161 AAAGAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (10 bp):
GGGAAAGAAA
Found at i:8101148 original size:4 final size:4
Alignment explanation
Indices: 8101131--8101196 Score: 50
Period size: 4 Copynumber: 16.8 Consensus size: 4
8101121 GAGGAAGGGG
* * *
8101131 GAAA GAAA GGGAAA GAAA G-AG GAAA GAAA GAAA GAAA -AGA GAAG GAAA
1 GAAA GAAA --GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
8101179 GAAA G--A GAAA GGAAA GAA
1 GAAA GAAA GAAA -GAAA GAA
8101197 GAAGAGAAGG
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
2 2 0.04
3 4 0.08
4 35 0.71
5 4 0.08
6 4 0.08
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:8101161 original size:15 final size:13
Alignment explanation
Indices: 8101131--8101201 Score: 61
Period size: 15 Copynumber: 4.8 Consensus size: 13
8101121 GAGGAAGGGG
*
8101131 GAAAGAAAGGGAAA
1 GAAAGAAA-AGAAA
8101145 GAAAGAGGAAAGAAA
1 GAAAGA--AAAGAAA
8101160 GAAAGAAAAGAGAA
1 GAAAGAAAAGA-AA
8101174 GGAAAGAAAGAGAAA
1 -GAAAGAAA-AGAAA
8101189 GGAAAGAAGAAGA
1 -GAAAGAA-AAGA
8101202 GAAGGAGAGC
Statistics
Matches: 50, Mismatches: 1, Indels: 11
0.81 0.02 0.18
Matches are distributed among these distances:
13 5 0.10
14 8 0.16
15 31 0.62
16 6 0.12
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (13 bp):
GAAAGAAAAGAAA
Found at i:8101170 original size:34 final size:32
Alignment explanation
Indices: 8101132--8101204 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 32
8101122 AGGAAGGGGG
8101132 AAAGAAAGGGAAAGAAAGAGGAAA-GAAAGAAAGA
1 AAAGAAA-GGAAAGAAAGA-GAAAGGAAAG-AAGA
8101166 AAAGAGAAGGAAAGAAAGAGAAAGGAAAGAAGA
1 AAAGA-AAGGAAAGAAAGAGAAAGGAAAGAAGA
*
8101199 AGAGAA
1 AAAGAA
8101205 GGAGAGCAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 1 0.03
33 12 0.33
34 21 0.58
35 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (32 bp):
AAAGAAAGGAAAGAAAGAGAAAGGAAAGAAGA
Found at i:8101215 original size:9 final size:8
Alignment explanation
Indices: 8101168--8101219 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
8101158 AAGAAAGAAA
8101168 AGAGAAGG
1 AGAGAAGG
* *
8101176 AAAGAAAG
1 AGAGAAGG
8101184 AGA-AAGG
1 AGAGAAGG
* *
8101191 AAAGAAGA
1 AGAGAAGG
8101199 AGAGAAGG
1 AGAGAAGG
8101207 AGAGCAAGG
1 AGAG-AAGG
8101216 AGAG
1 AGAG
8101220 GAGCTAGTTG
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
7 5 0.15
8 21 0.62
9 8 0.24
ACGTcount: A:0.58, C:0.02, G:0.40, T:0.00
Consensus pattern (8 bp):
AGAGAAGG
Found at i:8106004 original size:27 final size:27
Alignment explanation
Indices: 8105929--8105986 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
8105919 TGGATAAGTT
* *
8105929 GTAGAATTACCAAAATACCCTTGTAGG
1 GTAGAAATACCAAAATACCCCTGTAGG
8105956 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAAATACCAAAATACCCCTGTAGG
8105983 GTAG
1 GTAG
8105987 GACTACCGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (27 bp):
GTAGAAATACCAAAATACCCCTGTAGG
Found at i:8106343 original size:15 final size:15
Alignment explanation
Indices: 8106323--8106352 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8106313 CCACACACAC
8106323 ATATATATATATATT
1 ATATATATATATATT
*
8106338 ATATATATATCTATT
1 ATATATATATATATT
8106353 CTGGTGGCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATATATATATATT
Found at i:8106988 original size:15 final size:16
Alignment explanation
Indices: 8106962--8106991 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8106952 AAGATTGATA
8106962 AACCGACTTTTTATTC
1 AACCGACTTTTTATTC
8106978 AACCG-CTTTTTATT
1 AACCGACTTTTTATT
8106992 TACAAAGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.47
Consensus pattern (16 bp):
AACCGACTTTTTATTC
Found at i:8117742 original size:21 final size:20
Alignment explanation
Indices: 8117717--8117781 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
8117707 TAGCCTTCGG
8117717 GCTTCCGTTTAGCGCTTGTGT
1 GCTTCCGTTTAGC-CTTGTGT
*
8117738 GCTTCAG-TTAGCCTTCG-G-
1 GCTTCCGTTTAGCCTT-GTGT
*
8117756 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGC-CTTGTGT
8117777 GCTTC
1 GCTTC
8117782 AGCTAGACTT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 6 0.17
19 9 0.25
20 10 0.28
21 11 0.31
ACGTcount: A:0.09, C:0.26, G:0.25, T:0.40
Consensus pattern (20 bp):
GCTTCCGTTTAGCCTTGTGT
Found at i:8117758 original size:39 final size:39
Alignment explanation
Indices: 8117699--8117799 Score: 157
Period size: 39 Copynumber: 2.6 Consensus size: 39
8117689 GCTCTGATGA
* * *
8117699 GCTTTAGTTAGCCTTCGGGCTTCCGTTTAGCGCTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
8117738 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
8117777 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
8117800 AGATCACGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.11, C:0.26, G:0.26, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:8130137 original size:6 final size:6
Alignment explanation
Indices: 8130122--8130172 Score: 59
Period size: 6 Copynumber: 8.3 Consensus size: 6
8130112 CTTTAGAATT
* *
8130122 AAAATG AAAATA AAAATA AAAATA AAAAT- AAAGTGA AAAATA AAAGATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAATA AAA-ATA
8130171 AA
1 AA
8130173 CTAAATGGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
5 4 0.10
6 26 0.67
7 9 0.23
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:8132057 original size:28 final size:28
Alignment explanation
Indices: 8132017--8132073 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
8132007 CGGTTGAAGA
**
8132017 GGAAGAAGGAAGAA-AAGGGAAAGGAAAG
1 GGAAGAAAAAAGAAGAAGGGAAA-GAAAG
*
8132045 GGAAGAAAAAAGAAGAAGGGAGAGAAAG
1 GGAAGAAAAAAGAAGAAGGGAAAGAAAG
8132073 G
1 G
8132074 ATGGGGGTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (28 bp):
GGAAGAAAAAAGAAGAAGGGAAAGAAAG
Found at i:8137830 original size:6 final size:6
Alignment explanation
Indices: 8137810--8137850 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
8137800 AGGTAATTTA
* *
8137810 AAAAAT AAAGAT AAAAGT AAAAAT AAAAAT AAAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT AAAA
8137851 GTCTTCAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:8139174 original size:42 final size:43
Alignment explanation
Indices: 8139074--8139231 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
8139064 AACAAGTACA
* * * *
8139074 ATGTCGACGTCCCGGACATGGTCTTACATGTAATTCAATATCG
1 ATGTCGATGTCCCAGACATGGTCTTACACGTAAATCAATATCG
** * * *
8139117 ATGTCTCTGTTCCAGATAGGGTCTTACACG-AAATCAGATA-CG
1 ATGTCGATGTCCCAGACATGGTCTTACACGTAAATCA-ATATCG
* * *
8139159 ATGTCGATGTCCCAGACATGGTCTTATATGTAAATCTCA-ATCG
1 ATGTCGATGTCCCAGACATGGTCTTACACGTAAATC-AATATCG
* * *
8139202 AGGCCTG-TGTCCCAGACACGGTCTTACACG
1 ATGTC-GATGTCCCAGACATGGTCTTACACG
8139232 ATGTCTGAGA
Statistics
Matches: 88, Mismatches: 22, Indels: 10
0.73 0.18 0.08
Matches are distributed among these distances:
42 31 0.35
43 56 0.64
44 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (43 bp):
ATGTCGATGTCCCAGACATGGTCTTACACGTAAATCAATATCG
Found at i:8139217 original size:85 final size:85
Alignment explanation
Indices: 8139074--8139232 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
8139064 AACAAGTACA
* * * * * *
8139074 ATGTCGACGTCCCGGACATGGTCTTACATGTAATTCAATATCGATGTCTCTGTTCCAGATAGGGT
1 ATGTCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGAGGCCTCTGTCCCAGACACGGT
8139139 CTTACACGAAATCAGATACG
66 CTTACACGAAATCAGATACG
* * *
8139159 ATGTCGATGTCCCAGACATGGTCTTATATGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACACG
1 ATGTCGACGTCCCAGACATGGTCTTACATGT-AAT-TCAATATCGAGGCCTCTGTCCCAGACACG
8139222 GTCTTACACGA
64 GTCTTACACGA
8139233 TGTCTGAGAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 57 0.90
86 4 0.06
87 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (85 bp):
ATGTCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGAGGCCTCTGTCCCAGACACGGT
CTTACACGAAATCAGATACG
Found at i:8148189 original size:30 final size:30
Alignment explanation
Indices: 8148153--8148213 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
8148143 TTACAATGGC
* *
8148153 TATTAGGACCAAATTGAAACAAATATAAAA
1 TATTAGGACCAAATTAAAACAAAAATAAAA
* * *
8148183 TATTAGGGCCGAATTAAAATAAAAATAAAA
1 TATTAGGACCAAATTAAAACAAAAATAAAA
8148213 T
1 T
8148214 GAAATTGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.56, C:0.08, G:0.11, T:0.25
Consensus pattern (30 bp):
TATTAGGACCAAATTAAAACAAAAATAAAA
Found at i:8149593 original size:44 final size:44
Alignment explanation
Indices: 8149536--8150007 Score: 696
Period size: 44 Copynumber: 10.8 Consensus size: 44
8149526 AGTCGAAATT
* * * *
8149536 TTCGATCTACTCTCTGACAATACAGAAACGCCAAATTTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
8149580 TTCGATCTGCTCTCTGACAACATAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
8149624 TTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
8149668 TTCGATCTGCTCTTTGACAATACAGAGACACCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
8149712 TTCGATCCG-TCTCTGACAATACAGAGATGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
8149755 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
8149799 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * *
8149843 TTTGATCGGCTCTCTAACAATACATG-GATGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACA-GAGACGCCAAATCTGCTATC
* *
8149887 TTCGATCCGCTCTCTGACAATACAGAGACGCCAAACCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
8149931 TTCGATCTGTTCTTTGACAATACAGAAATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
8149975 TTCGATCTGCTCTCTGACAATACAGAGACGCCA
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCA
8150008 GATGTCACCA
Statistics
Matches: 382, Mismatches: 43, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
43 39 0.10
44 342 0.90
45 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
Found at i:8161192 original size:2 final size:2
Alignment explanation
Indices: 8161185--8161221 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8161175 ATAAATTGCA
8161185 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8161222 ACAATATTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8161680 original size:29 final size:29
Alignment explanation
Indices: 8161648--8161715 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
8161638 AATTATACAT
*
8161648 AATAAATAGTTAATAAT-AAAATGACATAA
1 AATAAATA-ATAATAATAAAAATGACATAA
*
8161677 AATAAAATAATAATAATAAAAATGATATAA
1 AAT-AAATAATAATAATAAAAATGACATAA
*
8161707 TAT-AATAAT
1 AATAAATAAT
8161716 TTCCATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 6 0.18
29 10 0.29
30 18 0.53
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (29 bp):
AATAAATAATAATAATAAAAATGACATAA
Found at i:8162167 original size:30 final size:30
Alignment explanation
Indices: 8162110--8162168 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
8162100 TACAATGGCT
* *
8162110 ATTAGGACCAAATTGAAACAAATATAAAAA
1 ATTAGGACCAAATTAAAACAAAAATAAAAA
* * *
8162140 ATTAGGGCCGAATTAAAATAAAAATAAAA
1 ATTAGGACCAAATTAAAACAAAAATAAAA
8162169 CGAAATTGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.59, C:0.08, G:0.12, T:0.20
Consensus pattern (30 bp):
ATTAGGACCAAATTAAAACAAAAATAAAAA
Found at i:8172723 original size:28 final size:28
Alignment explanation
Indices: 8172691--8172759 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
8172681 GCGTAGATCA
8172691 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
8172719 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
8172747 CGATA-TACCCCTA
1 CGAAATTACCCCTA
8172760 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:8179056 original size:20 final size:20
Alignment explanation
Indices: 8179031--8179068 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8179021 GTTTATTCGC
*
8179031 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
8179051 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
8179069 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:8180764 original size:27 final size:27
Alignment explanation
Indices: 8180699--8180752 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
8180689 GTAGATCACG
8180699 AAATTACCCCTAAAGAGCAAAATTACC
1 AAATTACCCCTAAAGAGCAAAATTACC
8180726 AAATTACCCCTAAAGAGCAAAATTACC
1 AAATTACCCCTAAAGAGCAAAATTACC
8180753 GATATACCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.26, G:0.07, T:0.19
Consensus pattern (27 bp):
AAATTACCCCTAAAGAGCAAAATTACC
Found at i:8182098 original size:12 final size:12
Alignment explanation
Indices: 8182081--8182111 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8182071 GAAGCAGGGG
8182081 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
8182093 AGAAAAAGGGAA
1 AGAAAAAGAGAA
8182105 AGAAAAA
1 AGAAAAA
8182112 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:8184701 original size:87 final size:85
Alignment explanation
Indices: 8184554--8184762 Score: 273
Period size: 87 Copynumber: 2.5 Consensus size: 85
8184544 ACAAAATTCA
* *
8184554 GCGCCTTAATCCCCTAAGTAGTAGGGTAACAGG-CTAAAATTATAGATCTTATCTACCTAAGCAG
1 GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCTAAAATTACAGATCTTATCTACCTAAGCAG
*
8184618 TAGCGGAACAGATC-AACGAC
66 TAGCGGAACAGATCGAA-GAT
*
8184638 GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTC-AAAATTACAGATCTTATCTCCCTAAG
1 G---CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCTAAAATTACAGATCTTATCTACCTAAG
* * *
8184702 CAGTAGTGGAGCTGATCGAAGAT
63 CAGTAGCGGAACAGATCGAAGAT
* *
8184725 GCGCCTTAACCCCCTAAACAGTAGGGTAACAGGT-TAAA
1 GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCTAAA
8184763 GTATAGCAGA
Statistics
Matches: 110, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
84 35 0.32
87 72 0.65
88 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.22
Consensus pattern (85 bp):
GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCTAAAATTACAGATCTTATCTACCTAAGCAG
TAGCGGAACAGATCGAAGAT
Found at i:8185249 original size:207 final size:207
Alignment explanation
Indices: 8184887--8186009 Score: 1800
Period size: 207 Copynumber: 5.4 Consensus size: 207
8184877 CGGAGAGCAG
* ** * * *
8184887 ATCGAAAACATAGCTGATTTGGCTTTCACGTACTTATGATGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* * * *
8184952 TCTCAGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAAACACAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
* * * *
8185017 AACAGATCTGGCCTTCAGATGTTTATACTGAAGTATGATCCAAGATGGTTTGGCATCTTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
8185082 TACAAGGAACAA
196 TACAAGGAACAA
*
8185094 ATTGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* *
8185159 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAAGGCAGACAGAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
*
8185224 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGTAAGATCCAAGATGGTTTGGCATCCTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
8185289 TACAAGGAACAA
196 TACAAGGAACAA
*
8185301 ATCGAAGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* ** * * *
8185366 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGATGTCTTCATATTCAATGGAGGGCAGACACAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
* * *
8185431 AGCAGATTTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGATGGGCATCCTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
8185496 TACAAGGAACAA
196 TACAAGGAACAA
8185508 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* *
8185573 TCTCTGTATTGTCAGAGCACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGGGCAGACACAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
8185638 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
8185703 TACAAGGAACAA
196 TACAAGGAACAA
* *
8185715 ATCGAAGACATAACTGATTTGGCTTTTACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
* * * *
8185780 TCTCTATATTGTTAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGACAGACATAT
66 TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
** * * *
8185845 AGCAGATCTAACCTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCT
131 AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
*
8185909 TACAAGGAGCAA
196 TACAAGGAACAA
* ** * *
8185921 ATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTTACACTGAAGCAAATCTAAGGTGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
8185986 TCTCTGTATTGTCAG-GAAACAAAT
66 TCTCTGTATTGTCAGAG-AACAAAT
8186010 TGAAGAAGCA
Statistics
Matches: 852, Mismatches: 63, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
205 1 0.00
206 118 0.14
207 733 0.86
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACAT
AGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCT
TACAAGGAACAA
Found at i:8187752 original size:71 final size:71
Alignment explanation
Indices: 8187664--8187827 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
8187654 GAGATGTATC
8187664 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
8187729 AGGACA
66 AGGACA
*
8187735 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
8187800 CGGACA
66 AGGACA
8187806 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
8187828 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:8189162 original size:45 final size:45
Alignment explanation
Indices: 8189107--8189245 Score: 181
Period size: 45 Copynumber: 3.1 Consensus size: 45
8189097 TGTTACATTT
* *
8189107 GATCTGCTCCCCGTCTAATACAGAGACGTCAAATCTGTTATCTTC
1 GATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * **
8189152 GATCTACTCCCTGTCTAATACAGAGACACCAAATCTACT-TCTTC
1 GATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
8189196 AATCTACTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTG
1 GATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
8189241 GATCT
1 GATCT
8189246 GCTTCAATGT
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 37 0.47
45 41 0.53
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.30
Consensus pattern (45 bp):
GATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
Found at i:8189212 original size:44 final size:45
Alignment explanation
Indices: 8189108--8189231 Score: 169
Period size: 44 Copynumber: 2.8 Consensus size: 45
8189098 GTTACATTTG
* * ** *
8189108 ATCTGCTCCCCGTCTAATACAGAGACGTCAAATCTGTTATCTTCG
1 ATCTACTCCCCGTCTAATACAGAGACGCCAAATCTACTATCTTCA
* *
8189153 ATCTACTCCCTGTCTAATACAGAGACACCAAATCTACT-TCTTCA
1 ATCTACTCCCCGTCTAATACAGAGACGCCAAATCTACTATCTTCA
*
8189197 ATCTACTCCCCGTCTAATACAGAGATGCCAAATCT
1 ATCTACTCCCCGTCTAATACAGAGACGCCAAATCT
8189232 GTCATCTTGG
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
44 37 0.54
45 32 0.46
ACGTcount: A:0.29, C:0.31, G:0.11, T:0.29
Consensus pattern (45 bp):
ATCTACTCCCCGTCTAATACAGAGACGCCAAATCTACTATCTTCA
Found at i:8189391 original size:78 final size:79
Alignment explanation
Indices: 8189262--8189432 Score: 267
Period size: 78 Copynumber: 2.2 Consensus size: 79
8189252 ATGTAAACAC
* **
8189262 ATGAAGGT-CAGATCTGCTATGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCCAGATCTACTATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
8189326 TTGGATCTACTTCA
66 TTGGATCTACTTCA
*
8189340 ATGAAGGTCCA-ATCTATTATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCCAGATCTACTATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
* *
8189404 TTGGATTTGCTTCA
66 TTGGATCTACTTCA
8189418 ATGAAGGT-CAGATCT
1 ATGAAGGTCCAGATCT
8189433 GCTCCCCGTC
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
77 2 0.02
78 81 0.95
79 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (79 bp):
ATGAAGGTCCAGATCTACTATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
TTGGATCTACTTCA
Found at i:8189466 original size:62 final size:62
Alignment explanation
Indices: 8189369--8189497 Score: 231
Period size: 62 Copynumber: 2.1 Consensus size: 62
8189359 TGTCTTCGAC
* * *
8189369 CTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATTTGCTTCAATGAAGGTCAGAT
1 CTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
8189431 CTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
1 CTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
8189493 CTGCT
1 CTGCT
8189498 ATGTCTTTGA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (62 bp):
CTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
Found at i:8189544 original size:140 final size:140
Alignment explanation
Indices: 8189292--8189575 Score: 462
Period size: 140 Copynumber: 2.0 Consensus size: 140
8189282 GTCTTCGATT
* * *
8189292 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTTCAATGAAGGTCCAATCTAT
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTACTTCAATGAAAGTCCAATCTAC
* *
8189357 TATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATTTGCTTCAATGA
66 TATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGA
8189422 AGGTCAGATC
131 AGGTCAGATC
* *
8189432 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGT-CAGATCTG
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTACTTCAATGAAAGTCCA-ATCTA
* * *
8189496 CTATGTCTTTGATCTGCTCCTCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATG
65 CTATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATG
8189561 AAGGTCAGATC
130 AAGGTCAGATC
8189572 TGCT
1 TGCT
8189576 ATGTCTTCGA
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
139 2 0.02
140 131 0.98
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (140 bp):
TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTACTTCAATGAAAGTCCAATCTAC
TATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGA
AGGTCAGATC
Found at i:8189557 original size:78 final size:78
Alignment explanation
Indices: 8189428--8189592 Score: 285
Period size: 78 Copynumber: 2.1 Consensus size: 78
8189418 ATGAAGGTCA
*
8189428 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
1 GATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
*
8189493 CTGCTATGTCTTT
66 CTGCTATGTCTTC
* * *
8189506 GATCTGCTCCTCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGAT
1 GATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
8189571 CTGCTATGTCTTC
66 CTGCTATGTCTTC
8189584 GATCTGCTC
1 GATCTGCTC
8189593 TCCATCGAAT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (78 bp):
GATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
CTGCTATGTCTTC
Found at i:8189610 original size:78 final size:78
Alignment explanation
Indices: 8189428--8189618 Score: 267
Period size: 78 Copynumber: 2.4 Consensus size: 78
8189418 ATGAAGGTCA
* * *
8189428 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
1 GATCTGCTCCTCATCGAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
*
8189493 CTGCTATGTCTTT
66 CTGCTATGTCTTC
* * * * *
8189506 GATCTGCTCCTCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGAT
1 GATCTGCTCCTCATCGAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
8189571 CTGCTATGTCTTC
66 CTGCTATGTCTTC
**
8189584 GATCTGCT-CTCCATCGAATATGGAGATGCCAAATC
1 GATCTGCTCCT-CATCGAATACAGAGATGCCAAATC
8189619 TGTTTCTTCG
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 2 0.02
78 100 0.98
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (78 bp):
GATCTGCTCCTCATCGAATACAGAGATGCCAAATCATCTTGAATCTGCTTCAATGAAAGTCAGAT
CTGCTATGTCTTC
Found at i:8189990 original size:41 final size:42
Alignment explanation
Indices: 8189937--8190077 Score: 139
Period size: 41 Copynumber: 3.4 Consensus size: 42
8189927 ATCTACTTCG
8189937 CTACTGCTTA-GGGATAAGATCTGCAAATTTAACTTGTTACC
1 CTACTGCTTAGGGGATAAGATCTGCAAATTTAACTTGTTACC
* ** ** * *
8189978 CTACTGCTTAGGGGATTAAGGTGGGTC---TTCGA-TCTGCTACA
1 CTACTGCTTAGGGGA-TAAGATCTG-CAAATTTAACT-TGTTACC
*
8190019 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGG-GATAAGATCTGCAAATTTAACTTGTTACC
8190062 CTACTGCTTAGGGGAT
1 CTACTGCTTAGGGGAT
8190078 TAAGGTGAGT
Statistics
Matches: 76, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
40 2 0.03
41 37 0.49
42 9 0.12
43 27 0.36
44 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (42 bp):
CTACTGCTTAGGGGATAAGATCTGCAAATTTAACTTGTTACC
Found at i:8190059 original size:84 final size:84
Alignment explanation
Indices: 8189890--8190331 Score: 583
Period size: 84 Copynumber: 5.3 Consensus size: 84
8189880 ATCATCTTGG
* * * * *
8189890 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTTGATCTACTTCGCTACTGCTTA-GG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGTG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
*
8189953 AGATCTGCAAATTTAACTTGTT
63 AGATCTGCAAATTTAACCTGTT
* *
8189975 ACCCTACTGCTTAGGGGATTAAGGTGGGTCTTCGATCTGCTACACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8190040 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
8190059 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCATCGATCTGCTCCGCTACTGCTTAGGCAGATA
1 ACCCTACTGCTTAGGGGATTAAGGTGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
*
8190124 AGATCTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * * *
8190141 ACCCTACTTCTTAGGGGATTAAGGCGAGTCTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8190206 TCTGAAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
8190225 ACCCTACTACTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
**
8190290 TCTATAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
8190309 AGCCTACTGCTTAGGGGATTAAG
1 ACCCTACTGCTTAGGGGATTAAG
8190332 ACGCTGAATT
Statistics
Matches: 318, Mismatches: 29, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
79 34 0.11
81 1 0.00
82 59 0.19
83 2 0.01
84 160 0.50
85 26 0.08
87 36 0.11
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:8190194 original size:166 final size:165
Alignment explanation
Indices: 8189890--8190331 Score: 543
Period size: 166 Copynumber: 2.6 Consensus size: 165
8189880 ATCATCTTGG
* * * *
8189890 ACCCTACTGCTTAGGGGGTTAAGGTGCA-TCGTCTTTGATCTACTTCGCTACTGCTTAGG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGTG-AGTCGTC-TCGATCTGCTCCGCTACTGCTTAGGAGATA
* * * *
8189953 AGATCTGCAAATTTAACTTGTTACCCTACTGCTTAGGGGATTAAGGTGGGTCTTCGATCTGCTAC
64 AGATCTGC--A--GAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTAC
*
8190018 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
125 ACTACTGCTTAGGGAGATAAGATCTGAAAATTTAACCTGTT
8190059 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCATCGATCTGCTCCGCTACTGCTTAGGCAGATA
1 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTC-TCGATCTGCTCCGCTACTGCTTAGG-AGATA
* * * *
8190124 AGATCTGC-GAACCTGTTACCCTACTTCTTAGGGGATTAAGGCGAGTCTTTGATTTGCTCCACTA
64 AGATCTGCAGAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTACACTA
8190188 CTGCTTAGGGAGATAAGATCTGAAAATTTAACCTGTT
129 CTGCTTAGGGAGATAAGATCTGAAAATTTAACCTGTT
* * * *
8190225 ACCCTACTACTTAAGGGATTAAGGCGAGTC-T-TCGATCTGCTCCACTACTGCTTAGGGAGATAA
1 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCTCGATCTGCTCCGCTACTGCTTA-GGAGATAA
** * *
8190288 GATCTATAAATTTAACCTGTTAGCCTACTGCTTAGGGGATTAAG
65 GATC--TGCA--GAACCTGTTACCCTACTGCTTAGGGGATTAAG
8190332 ACGCTGAATT
Statistics
Matches: 241, Mismatches: 23, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
163 32 0.13
164 2 0.01
165 2 0.01
166 111 0.46
168 30 0.12
169 52 0.22
171 12 0.05
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (165 bp):
ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCTCGATCTGCTCCGCTACTGCTTAGGAGATAAG
ATCTGCAGAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTACACTACT
GCTTAGGGAGATAAGATCTGAAAATTTAACCTGTT
Found at i:8191295 original size:11 final size:11
Alignment explanation
Indices: 8191281--8191333 Score: 65
Period size: 11 Copynumber: 4.8 Consensus size: 11
8191271 TGGCCTATCC
8191281 TTTTTTTTTCT
1 TTTTTTTTTCT
8191292 TTTTTTTTTCT
1 TTTTTTTTTCT
8191303 CTTTTTCTTTTC-
1 -TTTTT-TTTTCT
*
8191315 -TTTTTTTCCT
1 TTTTTTTTTCT
8191325 TTTTTTTTT
1 TTTTTTTTT
8191334 TGAAATAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
9 4 0.11
10 4 0.11
11 18 0.50
12 5 0.14
13 5 0.14
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:8191299 original size:13 final size:13
Alignment explanation
Indices: 8191280--8191334 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 13
8191270 TTGGCCTATC
8191280 CTTTTTTTTTCTTT
1 CTTTTTTTTT-TTT
*
8191294 TTTTTTTCTCTTTTT
1 CTTTTTT-T-TTTTT
*
8191309 CTTTTCTTTTTTTC
1 CTTTT-TTTTTTTT
8191323 CTTTTTTTTTTT
1 CTTTTTTTTTTT
8191335 GAAATAGAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
13 7 0.20
14 15 0.43
15 9 0.26
16 4 0.11
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
CTTTTTTTTTTTT
Found at i:8191309 original size:19 final size:19
Alignment explanation
Indices: 8191285--8191334 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
8191275 CTATCCTTTT
8191285 TTTTTC-TTTTTTTTTTCTC
1 TTTTTCTTTTTTTTTTTC-C
8191304 TTTTTCTTTTCTTTTTTTCC
1 TTTTTCTTTT-TTTTTTTCC
8191324 TTTTT-TTTTTT
1 TTTTTCTTTTTT
8191335 GAAATAGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.07
19 10 0.34
20 9 0.31
21 8 0.28
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTCTTTTTTTTTTTCC
Found at i:8196471 original size:26 final size:25
Alignment explanation
Indices: 8196436--8196485 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
8196426 ATATATATCA
*
8196436 TAAAATAGCACATAAAAGAAATAAT
1 TAAAATAGCACATAAAAAAAATAAT
*
8196461 TAAACATAGCATATAAAAAAAATAA
1 TAAA-ATAGCACATAAAAAAAATAA
8196486 AACTATGCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.66, C:0.08, G:0.06, T:0.20
Consensus pattern (25 bp):
TAAAATAGCACATAAAAAAAATAAT
Found at i:8197001 original size:22 final size:21
Alignment explanation
Indices: 8196966--8197041 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
8196956 AAAAGGTATC
* *
8196966 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
8196987 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
8197010 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
8197029 TGC-AATCATATCT
1 TACAAATCATATCT
8197042 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:8197058 original size:35 final size:37
Alignment explanation
Indices: 8196995--8197073 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
8196985 ATTACAAAAT
8196995 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
8197031 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
8197066 CATATCAT
1 CATATCAT
8197074 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:8197071 original size:14 final size:15
Alignment explanation
Indices: 8197016--8197071 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
8197006 AGATTGCATA
8197016 TCATATCTAAGATTG
1 TCATATCTAAGATTG
8197031 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
8197049 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
8197066 -CATATC
1 TCATATC
8197072 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:8197081 original size:17 final size:19
Alignment explanation
Indices: 8197002--8197073 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
8196992 AATCATATCT
8197002 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8197021 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
8197039 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
8197056 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
8197074 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8200226 original size:22 final size:21
Alignment explanation
Indices: 8200191--8200266 Score: 77
Period size: 22 Copynumber: 3.7 Consensus size: 21
8200181 AAAAGGTATC
* *
8200191 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
8200212 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
*
8200235 TACATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
8200254 TGC-AATCATATCT
1 TACAAATCATATCT
8200267 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 10 0.22
20 1 0.02
21 3 0.07
22 15 0.33
23 11 0.24
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:8200251 original size:19 final size:19
Alignment explanation
Indices: 8200227--8200317 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
8200217 AATCATATCT
*
8200227 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
8200246 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
8200264 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
8200281 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8200300 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
8200318 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8200282 original size:35 final size:36
Alignment explanation
Indices: 8200239--8200309 Score: 135
Period size: 35 Copynumber: 2.0 Consensus size: 36
8200229 TAAGATTACA
8200239 TATCATATCTAAGATTGCA-ATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
8200274 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
8200310 CATATCATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 19 0.54
36 16 0.46
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:8203923 original size:19 final size:19
Alignment explanation
Indices: 8203899--8203979 Score: 135
Period size: 19 Copynumber: 4.2 Consensus size: 19
8203889 AATCTTTAAG
8203899 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8203918 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8203937 GATATGCAATCGTAGATAT
1 GATATGCAATCTTAGATAT
8203956 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
8203977 GAT
1 GAT
8203980 CTTGTAATCT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
19 49 0.84
21 9 0.16
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8212185 original size:64 final size:64
Alignment explanation
Indices: 8212030--8212233 Score: 198
Period size: 67 Copynumber: 3.1 Consensus size: 64
8212020 TGGATGATAC
* * * *
8212030 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTA-GTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCGCATGGATGGTTCTATGTGCACACCATGTAG-ACAAGAGAGCTAC
8212093 AAG
64 --G
* * *
8212096 ACATTATGATGTAGCTAGGTCGCATGGATGATTCTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TAT-ATGTAGCTAGGTCGCATGGATGGTTCTATGTGCACACCATGTAGACAAGAGAGCTAC
8212161 G
64 G
* * * *
8212162 GGATATATGTAGCTAGGTCGCATGCG-TGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCT
1 AGATATATGTAGCTAGGTCGCATG-GATGGTTCTA--TG-TGCACACCATGTAGACAAGAGAGCT
8212226 ACG
62 ACG
8212229 AGATA
1 AGATA
8212234 AATTGGGTAG
Statistics
Matches: 116, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
64 24 0.21
65 4 0.03
66 7 0.06
67 56 0.48
68 24 0.21
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGATGGTTCTATGTGCACACCATGTAGACAAGAGAGCTACG
Found at i:8214934 original size:24 final size:24
Alignment explanation
Indices: 8214907--8214969 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
8214897 ATCTTTTATC
*
8214907 ATATATTATTTTCCT-ACATATATT
1 ATATATTATTTT-ATAACATATATT
* * *
8214931 ATATTTTATTATATAACATTTATT
1 ATATATTATTTTATAACATATATT
*
8214955 ATATATTTTTTTATA
1 ATATATTATTTTATA
8214970 TATTATCTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
23 1 0.03
24 30 0.97
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (24 bp):
ATATATTATTTTATAACATATATT
Found at i:8214968 original size:12 final size:12
Alignment explanation
Indices: 8214930--8214973 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
8214920 CTACATATAT
8214930 TATATTTTATTA
1 TATATTTTATTA
*
8214942 TATAACATTTATTA
1 TAT-A-TTTTATTA
*
8214956 TATATTTTTTTA
1 TATATTTTATTA
8214968 TATATT
1 TATATT
8214974 ATCTATCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 15 0.56
13 2 0.07
14 10 0.37
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:8214984 original size:26 final size:26
Alignment explanation
Indices: 8214930--8214984 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
8214920 CTACATATAT
* *
8214930 TATATTTTATTATATAACATTTATTA
1 TATATTTTATTATATAACATCTATCA
* **
8214956 TATATTTTTTTATATATTATCTATCA
1 TATATTTTATTATATAACATCTATCA
8214982 TAT
1 TAT
8214985 TATATATATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (26 bp):
TATATTTTATTATATAACATCTATCA
Found at i:8214991 original size:33 final size:32
Alignment explanation
Indices: 8214937--8215002 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 32
8214927 TATTATATTT
*
8214937 TATTATATAACATTTATTATATATTTTTTTATA
1 TATTATATAACATTTATTATATA-TGTTTTATA
* *
8214970 TATTATCTATCATATTA-TATATATGTTTTATA
1 TATTATATAACAT-TTATTATATATGTTTTATA
8215002 T
1 T
8215003 TACTCATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 9 0.31
33 17 0.59
34 3 0.10
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (32 bp):
TATTATATAACATTTATTATATATGTTTTATA
Found at i:8215135 original size:20 final size:20
Alignment explanation
Indices: 8215094--8215135 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8215084 TCATTATTAA
* *
8215094 TTATTTTTTATGTGATATTT
1 TTATTTATTATGTAATATTT
8215114 TTATTTATTATGTAATTATTT
1 TTATTTATTATGTAA-TATTT
8215135 T
1 T
8215136 GTAAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (20 bp):
TTATTTATTATGTAATATTT
Found at i:8217728 original size:45 final size:45
Alignment explanation
Indices: 8217669--8217790 Score: 190
Period size: 45 Copynumber: 2.7 Consensus size: 45
8217659 AGATAGCAGC
*
8217669 CTTATCTCCCTGAAGTAGCAGTGGAGAAGATTAAGGACAGTGATT
1 CTTATCTCCTTGAAGTAGCAGTGGAGAAGATTAAGGACAGTGATT
* *
8217714 CTTATCTCCTTGAAGTAGCAGTGGAGAAGACTGAGGACAGTGATT
1 CTTATCTCCTTGAAGTAGCAGTGGAGAAGATTAAGGACAGTGATT
** *
8217759 CTTATCTCCTTGAAGTTCCAGTGGAGTAGATT
1 CTTATCTCCTTGAAGTAGCAGTGGAGAAGATT
8217791 GAAGTTACAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
CTTATCTCCTTGAAGTAGCAGTGGAGAAGATTAAGGACAGTGATT
Found at i:8219499 original size:21 final size:19
Alignment explanation
Indices: 8219473--8219529 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 19
8219463 TATTTTTATA
8219473 TATATTATTTATATTAGAC
1 TATATTATTTATATTAGAC
8219492 TACCTATTATTT-TA-T--A-
1 TA--TATTATTTATATTAGAC
8219508 TATATTATTTATATTAGAC
1 TATATTATTTATATTAGAC
8219527 TAT
1 TAT
8219530 CTTTTTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
14 8 0.26
15 2 0.06
16 3 0.10
17 1 0.03
18 1 0.03
19 6 0.19
20 2 0.06
21 8 0.26
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (19 bp):
TATATTATTTATATTAGAC
Found at i:8219512 original size:35 final size:35
Alignment explanation
Indices: 8219456--8219555 Score: 137
Period size: 35 Copynumber: 2.8 Consensus size: 35
8219446 TATTCTTAAA
8219456 TACCTATTATTTTTATATATATTATTTATATTAGAC
1 TACCTATTA-TTTTATATATATTATTTATATTAGAC
8219492 TACCTATTATTTTATATATATTATTTATATTAGAC
1 TACCTATTATTTTATATATATTATTTATATTAGAC
* * * *
8219527 TATCTTTTTTAATTTATGTATATTATTTA
1 TA-C-CTATTATTTTATATATATTATTTA
8219556 CTTATATATA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
35 28 0.48
36 10 0.17
37 20 0.34
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (35 bp):
TACCTATTATTTTATATATATTATTTATATTAGAC
Found at i:8219818 original size:2 final size:2
Alignment explanation
Indices: 8219771--8219801 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8219761 TTTTCACACT
8219771 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8219802 TTAAATGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8223094 original size:2 final size:2
Alignment explanation
Indices: 8223087--8223117 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8223077 GAGACTAATC
8223087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8223118 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8225154 original size:30 final size:30
Alignment explanation
Indices: 8225120--8225176 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
8225110 TAACTCAAAA
8225120 TTTTGAAAAATTACAATTTTGCCCCTAAAC
1 TTTTGAAAAATTACAATTTTGCCCCTAAAC
* * * *
8225150 TTTTGCATATTTACACTTTTGCCCCTA
1 TTTTGAAAAATTACAATTTTGCCCCTA
8225177 GGCTCGGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCTAAAC
Found at i:8234781 original size:11 final size:11
Alignment explanation
Indices: 8234767--8234797 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8234757 TATATATATT
8234767 TAAAAATTATA
1 TAAAAATTATA
*
8234778 TAAAAATAATA
1 TAAAAATTATA
8234789 TAAAAATTA
1 TAAAAATTA
8234798 ATACGAGCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Done.