Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 240 of 345
Found at i:70721727 original size:31 final size:31
Alignment explanation
Indices: 70721684--70721828 Score: 256
Period size: 31 Copynumber: 4.7 Consensus size: 31
70721674 TTAGTCTTGG
*
70721684 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTCTCATAAAT
70721714 CATATCACTGGGCCGAAGCCTTCTCATAAAT
1 CATATCACTGGGCCGAAGCCTTCTCATAAAT
70721745 CATATCACTGGGCCGAAGCCTTCTCATAAAT
1 CATATCACTGGGCCGAAGCCTTCTCATAAAT
* *
70721776 CATATCACTGGGCCAAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTCTCATAAAT
70721807 CATATCACTGGGCCGAAGCCTT
1 CATATCACTGGGCCGAAGCCTT
70721829 ACAGTAAACA
Statistics
Matches: 110, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 5 0.05
31 105 0.95
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTCTCATAAAT
Found at i:70722076 original size:25 final size:25
Alignment explanation
Indices: 70722035--70722117 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 25
70722025 CTGAAGGCCT
70722035 AGCCTCTTTTC-AT-AACTGGGGCAA
1 AGCC-CTTTTCGATAAACTGGGGCAA
70722059 AGCCC-TTTCTGATAAACTGGGGCAA
1 AGCCCTTTTC-GATAAACTGGGGCAA
* * *
70722084 AGCCCTTTTCGGTAAACTAGGGCAG
1 AGCCCTTTTCGATAAACTGGGGCAA
70722109 AGCCCTTTT
1 AGCCCTTTT
70722118 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
22 4 0.08
23 1 0.02
24 6 0.12
25 37 0.71
26 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTCGATAAACTGGGGCAA
Found at i:70722957 original size:27 final size:27
Alignment explanation
Indices: 70722927--70722991 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
70722917 GGGCATATTT
70722927 GTCATTTTACCATACAAGGG-TGTTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
70722954 GTCACTTTACCCTATAAGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
70722981 GTCTTTTTACC
1 GTCATTTTACC
70722992 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:70723075 original size:27 final size:27
Alignment explanation
Indices: 70723045--70723232 Score: 137
Period size: 27 Copynumber: 6.9 Consensus size: 27
70723035 GTAAATCTAC
*
70723045 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
70723072 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * *
70723100 AAAGTCAAGGGTATTTCTGTAATTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* **
70723128 AAATCAAGGGTATTTTGGTAATTTTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
70723155 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* ** *
70723182 AAACTAAGGGTATTTTGGTAATTCTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
70723209 CCTA-CAGGGGTATTTCAGTAATTT
1 -AAACCAAGGGTATTTCAGTAATTT
70723233 CACAATCAAG
Statistics
Matches: 131, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
27 101 0.77
28 16 0.12
29 14 0.11
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:70723150 original size:56 final size:55
Alignment explanation
Indices: 70723021--70723204 Score: 173
Period size: 54 Copynumber: 3.4 Consensus size: 55
70723011 ATTTCATCCT
* * * * *
70723021 ACAAGGGTGTTTTGGTAA-ATCTACAAAC-CAAGGGTATTTCAGTAATTTTGTAA
1 ACAAGGGTATTTTGGTAATTTTTAGAAACTCAAGGGTATTTCTGTAATTTTGTAA
* * *
70723074 ACCAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAA
1 A-CAAGGGTATTT-TGGTAATTTTTAGAAACTCAAGGGTATTTCTGTAATTTTGTAA
* * **
70723130 ATCAAGGGTATTTTGGTAA-TTTTATAAACT-AGGGGTATTT-TGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTTAGAAACTCAAGGGTATTTCT-GTAATTTTGTAA
70723184 ACTAAGGGTATTTTGGTAATT
1 AC-AAGGGTATTTTGGTAATT
70723205 CTATCCTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
53 3 0.03
54 48 0.45
55 18 0.17
56 38 0.36
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (55 bp):
ACAAGGGTATTTTGGTAATTTTTAGAAACTCAAGGGTATTTCTGTAATTTTGTAA
Found at i:70723177 original size:83 final size:81
Alignment explanation
Indices: 70723049--70723204 Score: 181
Period size: 83 Copynumber: 1.9 Consensus size: 81
70723039 ATCTACAAAC
* * * *
70723049 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTTTAGAAAGTCAAGGGTAT
1 CAAGGGTATTTCAGTAATTTTATAAACCAAGGGTATTTCTATAA-TTTTACAAACT-AAGGGTAT
70723114 TTCT-GTAATTTTGTAAAT
64 TT-TGGTAATTTTGTAAAT
** * * *
70723132 CAAGGGTATTTTGGTAATTTTATAAACTAGGGGTATTT-TGGTAATTTTACAAACTAAGGGTATT
1 CAAGGGTATTTCAGTAATTTTATAAACCAAGGGTATTTCT-ATAATTTTACAAACTAAGGGTATT
70723196 TTGGTAATT
65 TTGGTAATT
70723205 CTATCCTACA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
80 1 0.02
81 16 0.26
82 10 0.16
83 35 0.56
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.42
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTATAAACCAAGGGTATTTCTATAATTTTACAAACTAAGGGTATTT
TGGTAATTTTGTAAAT
Found at i:70723230 original size:54 final size:54
Alignment explanation
Indices: 70723023--70723246 Score: 159
Period size: 54 Copynumber: 4.1 Consensus size: 54
70723013 TTCATCCTAC
* * * * * ** *
70723023 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTCTATAAACTAGGGGTATTTCAGTAATTTTACAAACT
* * * * * * * **
70723077 AATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAA-T
1 AAGGGTATTT-TGGTAA-TTCTATAAACT-AGGGGTATTTCAGTAATTTTACAAACT
* **
70723132 CAAGGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 -AAGGGTATTTTGGTAATTCTATAAACTAGGGGTATTTCAGTAATTTTACAAACT
** * *
70723187 AAGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAATC-
1 AAGGGTATTTTGGTAATTCTAT-AAACTAGGGGTATTTCAGTAATTTTACAAACT
70723240 AAGGGTA
1 AAGGGTA
70723247 AAACGGTAAT
Statistics
Matches: 137, Mismatches: 26, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
53 7 0.05
54 74 0.54
55 20 0.15
56 36 0.26
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTCTATAAACTAGGGGTATTTCAGTAATTTTACAAACT
Found at i:70723274 original size:27 final size:27
Alignment explanation
Indices: 70723236--70723407 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
70723226 GTAATTTCAC
*
70723236 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
70723263 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* *
70723290 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* ** * *
70723317 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
70723344 AATCGAGGGTAAAACGGTAATTCTT-TA
1 AATCGAGGGTAAAACGGTAATT-TTGTA
* *
70723371 AATTGAGGGTAAAACGGTAATTATGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
70723398 AGTCG-GGGTA
1 AATCGAGGGTA
70723408 CTTTGGTTAT
Statistics
Matches: 125, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.06
27 116 0.93
28 2 0.02
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:70723353 original size:81 final size:81
Alignment explanation
Indices: 70723236--70723398 Score: 222
Period size: 81 Copynumber: 2.0 Consensus size: 81
70723226 GTAATTTCAC
* * * *
70723236 AATCAAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATT-TTGTAAATCGAGGGT
1 AATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTT-TAAATCGAGGGT
*
70723300 AAAACAGTAATTCTGTA
65 AAAACAGTAATTATGTA
* *
70723317 AATCAAGGGTAAAATAGTAATTCTATAAA-TCGAGGGTAAAACGGTAATTCTTTAAATTGAGGGT
1 AATCAAGGGTAAAACAGTAATTCTATAAACT-GAGGGTAAAACGGTAATTCTTTAAATCGAGGGT
*
70723381 AAAACGGTAATTATGTA
65 AAAACAGTAATTATGTA
70723398 A
1 A
70723399 GTCGGGGTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
80 1 0.01
81 69 0.96
82 2 0.03
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.29
Consensus pattern (81 bp):
AATCAAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTTTAAATCGAGGGTA
AAACAGTAATTATGTA
Found at i:70724697 original size:17 final size:17
Alignment explanation
Indices: 70724675--70724707 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70724665 CCCACTTAAT
*
70724675 ATATTATAACTTATTTA
1 ATATTATAACATATTTA
70724692 ATATTATAACATATTT
1 ATATTATAACATATTT
70724708 CAATTATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
ATATTATAACATATTTA
Found at i:70729174 original size:27 final size:27
Alignment explanation
Indices: 70729143--70729501 Score: 382
Period size: 27 Copynumber: 13.3 Consensus size: 27
70729133 TTAGTTTACC
*
70729143 AAATTACCAAAATTCCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
70729170 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
70729197 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
70729224 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
70729251 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
70729278 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
70729305 AAATTACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
70729332 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
70729359 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
70729386 AAATTACCAAAATAAACCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
70729413 AAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* **
70729440 AAATTA-TAGAAATA-CCCTCGACTTGTA
1 AAATTACCA-AAATACCCCT-GGTTTGTA
* * * *
70729467 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
70729494 GAATTACC
1 AAATTACC
70729502 GTTTTACCCT
Statistics
Matches: 283, Mismatches: 45, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
26 5 0.02
27 274 0.97
28 4 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:70729552 original size:27 final size:27
Alignment explanation
Indices: 70729522--70729716 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
70729512 CGATTTACAA
* *
70729522 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
70729549 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70729576 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70729603 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
70729630 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
70729657 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
70729684 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
70729710 AATTACC
1 AATTACC
70729717 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 22, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 16 0.11
27 130 0.89
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:70729564 original size:54 final size:54
Alignment explanation
Indices: 70729448--70729564 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 54
70729438 TAAAATTATA
** **
70729448 GAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTATAGAATTACC
1 GAAATACCCTCGACTTACAAAATTACCAAAGTACCCTTGATGGATAGAATTACC
*** * *
70729502 GTTTTACCCTCGATTTACAAAATTACCGAAA-TACCCTT-ATAGGGTAGAATTACC
1 GAAATACCCTCGACTTACAAAATTACC-AAAGTACCCTTGAT-GGATAGAATTACC
70729556 GAAATACCC
1 GAAATACCC
70729565 CTGTAGGGTA
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
53 2 0.04
54 44 0.90
55 3 0.06
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (54 bp):
GAAATACCCTCGACTTACAAAATTACCAAAGTACCCTTGATGGATAGAATTACC
Found at i:70730195 original size:22 final size:22
Alignment explanation
Indices: 70730143--70730207 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
70730133 TTAAAGCCTT
* *
70730143 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
70730165 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
70730187 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
70730208 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:70730404 original size:26 final size:27
Alignment explanation
Indices: 70730366--70730439 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
70730356 ATTCTGTTAA
*
70730366 GTGGCT-TTGCCACATTATCTGT-TCTG
1 GTGGCTCTT-CCACAATATCTGTATCTG
70730392 GTGGCTCTTCCACAATATCTGTATCTG
1 GTGGCTCTTCCACAATATCTGTATCTG
*
70730419 GTGACTCTGT-CACAATATCTG
1 GTGGCTCT-TCCACAATATCTG
70730440 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
26 18 0.42
27 24 0.56
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (27 bp):
GTGGCTCTTCCACAATATCTGTATCTG
Found at i:70730616 original size:25 final size:25
Alignment explanation
Indices: 70730599--70730702 Score: 83
Period size: 25 Copynumber: 4.2 Consensus size: 25
70730589 ATTCTGTTAC
*
70730599 CTGATA-CTGATACTGATTTTGATT
1 CTGATACCTGATACTGATTCTGATT
*
70730623 CTGTTACCTGATACTGATTCTGATT
1 CTGATACCTGATACTGATTCTGATT
* * *
70730648 TTGATTA--TGTTACCTGATACTGATT
1 CTGA-TACCTGATA-CTGATTCTGATT
* *
70730673 CTGAT-TCTGATTCTGATTCT-AGTT
1 CTGATACCTGATACTGATTCTGA-TT
70730697 CTGATA
1 CTGATA
70730703 ATGTTTCTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
23 1 0.02
24 24 0.38
25 36 0.57
26 2 0.03
ACGTcount: A:0.22, C:0.15, G:0.16, T:0.46
Consensus pattern (25 bp):
CTGATACCTGATACTGATTCTGATT
Found at i:70730622 original size:31 final size:31
Alignment explanation
Indices: 70730576--70730687 Score: 188
Period size: 31 Copynumber: 3.6 Consensus size: 31
70730566 TTGCATTCAC
70730576 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
70730608 ATACTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
70730639 ATTCTGATTTTGATTATGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
70730670 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
70730688 ATTCTAGTTC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
31 69 0.92
32 6 0.08
ACGTcount: A:0.21, C:0.15, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:70730690 original size:6 final size:6
Alignment explanation
Indices: 70730576--70730701 Score: 80
Period size: 6 Copynumber: 20.3 Consensus size: 6
70730566 TTGCATTCAC
* * * *
70730576 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATACTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
70730626 -TTACCTG ATACTG ATTCTG ATTTTG ATTATG -TTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
70730676 ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
70730702 AATGTTTCTT
Statistics
Matches: 95, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
5 7 0.07
6 71 0.75
7 14 0.15
8 3 0.03
ACGTcount: A:0.21, C:0.15, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:70733696 original size:119 final size:120
Alignment explanation
Indices: 70733522--70733761 Score: 419
Period size: 119 Copynumber: 2.0 Consensus size: 120
70733512 ACAAATGTGG
* *
70733522 CCCTAATGTCAAGGCCAGGTTTGGGGTGTTACAAATCATATACCTTGAGTGTACTACTTGAGCCT
1 CCCTAATGTCAAGGCCAAGTTTGGGGTGTTACAAATCATATACCTTAAGTGTACTACTTGAGCCT
70733587 TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATAAAAAT
66 TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATAAAAAT
* * *
70733642 CCCTAATGTCTAGGCCAAG-TTGGGGTGTTACAAATCATATATCTTAAGTGTACTACTTGGGCCT
1 CCCTAATGTCAAGGCCAAGTTTGGGGTGTTACAAATCATATACCTTAAGTGTACTACTTGAGCCT
*
70733706 TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATGAAAAT
66 TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATAAAAAT
70733761 C
1 C
70733762 TTGAGATAAA
Statistics
Matches: 114, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 97 0.85
120 17 0.15
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (120 bp):
CCCTAATGTCAAGGCCAAGTTTGGGGTGTTACAAATCATATACCTTAAGTGTACTACTTGAGCCT
TCATCAGGATTTCAAAGATTCAATGGATATATAACTCTTGACTTGGCATAAAAAT
Found at i:70735965 original size:68 final size:66
Alignment explanation
Indices: 70735893--70736064 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
70735883 CATCATGTGT
* * * *
70735893 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
70735956 TGTAG
62 TGTAG
** * *
70735961 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
70736026 AG
65 AG
* * * *
70736028 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
70736065 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:70735998 original size:64 final size:64
Alignment explanation
Indices: 70735917--70736100 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
70735907 AGACATTATG
* * *
70735917 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
70735981 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70736046 AA
63 AA
* * *
70736048 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
70736101 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70736328 original size:32 final size:32
Alignment explanation
Indices: 70736287--70736352 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
70736277 AAACAAGTAA
70736287 GTTATACATGAGGATGATTTTATGGTGACCTT
1 GTTATACATGAGGATGATTTTATGGTGACCTT
70736319 GTTATACATGAGGATGATTTTATGGTGACCTT
1 GTTATACATGAGGATGATTTTATGGTGACCTT
70736351 GT
1 GT
70736353 GATCATGGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.09, G:0.26, T:0.41
Consensus pattern (32 bp):
GTTATACATGAGGATGATTTTATGGTGACCTT
Found at i:70739539 original size:43 final size:42
Alignment explanation
Indices: 70739489--70739587 Score: 130
Period size: 42 Copynumber: 2.3 Consensus size: 42
70739479 TCCCATATGT
*
70739489 GGTCTTACATGTAATCA-ACTATCGATG-CAACTGTCCCAGACAG
1 GGTCTTACATGTAATCATA-TA-CGATGCCAA-TGTCCCAGACAC
* *
70739532 GGTCTTACATGAAATCATATACGATGCCGATGTCCCAGACAC
1 GGTCTTACATGTAATCATATACGATGCCAATGTCCCAGACAC
70739574 GGTCTTACATGTAA
1 GGTCTTACATGTAA
70739588 ACCACAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 29 0.58
43 20 0.40
44 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATCATATACGATGCCAATGTCCCAGACAC
Found at i:70744368 original size:68 final size:66
Alignment explanation
Indices: 70744296--70744467 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
70744286 CATCATGTGT
* * * *
70744296 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
70744359 TGTAG
62 TGTAG
** * *
70744364 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
70744429 AG
65 AG
* * * *
70744431 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
70744468 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:70744401 original size:64 final size:64
Alignment explanation
Indices: 70744320--70744503 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
70744310 AGACATTATG
* * *
70744320 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
70744384 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70744449 AA
63 AA
* * *
70744451 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
70744504 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70748779 original size:68 final size:66
Alignment explanation
Indices: 70748707--70748878 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
70748697 CATCATGTGT
* * * *
70748707 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
70748770 TGTAG
62 TGTAG
** * *
70748775 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
70748840 AG
65 AG
* * * *
70748842 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
70748879 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:70748812 original size:64 final size:64
Alignment explanation
Indices: 70748731--70748913 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 64
70748721 AGACATTATG
* * *
70748731 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
70748795 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70748860 AA
63 AA
* * *
70748862 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
70748914 AACTATATGA
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70752517 original size:19 final size:19
Alignment explanation
Indices: 70752493--70752532 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
70752483 TTTCATTCTC
*
70752493 AAACATGGTATACAATTCA
1 AAACATAGTATACAATTCA
70752512 AAACATAGTATACAATTCA
1 AAACATAGTATACAATTCA
70752531 AA
1 AA
70752533 CGTACCTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (19 bp):
AAACATAGTATACAATTCA
Found at i:70752687 original size:43 final size:43
Alignment explanation
Indices: 70752639--70752795 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
70752629 AGCTCATACA
* *
70752639 ATGCCAACGTCCCAGACGTGGCCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCG
* *
70752682 ATGCC-ACTATCCCAGATAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCAAC-ATCCCAGA-CGTGGTCTTACATGTAATCAAATATCG
* * *
70752724 ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAACATCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
* *
70752768 ATGCCAACGTCTCAGACGTGGTCTTACA
1 ATGCCAACATCCCAGACGTGGTCTTACA
70752796 CGATAACACA
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 38 0.40
44 30 0.32
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:70754858 original size:15 final size:15
Alignment explanation
Indices: 70754838--70754868 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
70754828 AATTATGAAA
70754838 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
70754853 GATATGTTTTGTATT
1 GATATGTTTTGGATT
70754868 G
1 G
70754869 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:70755525 original size:55 final size:56
Alignment explanation
Indices: 70755441--70755549 Score: 193
Period size: 55 Copynumber: 2.0 Consensus size: 56
70755431 CATGGCTTCG
70755441 ATATATGTGTACAAGTAAGACCACGTTTAAT-CATTGGCATCGATATGTGATTTCA
1 ATATATGTGTACAAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTTCA
* *
70755496 ATATATGTGTGCAAGTAAGACCACGTTTAATACTTTGGCATCGATATGTGATTT
1 ATATATGTGTACAAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTT
70755550 TGATATGTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
55 30 0.59
56 21 0.41
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (56 bp):
ATATATGTGTACAAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTTCA
Found at i:70755556 original size:13 final size:13
Alignment explanation
Indices: 70755538--70755562 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70755528 CTTTGGCATC
70755538 GATATGTGATTTT
1 GATATGTGATTTT
70755551 GATATGTGATTT
1 GATATGTGATTT
70755563 GTAACATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (13 bp):
GATATGTGATTTT
Found at i:70765788 original size:32 final size:32
Alignment explanation
Indices: 70765747--70765810 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
70765737 ATTAATAGAT
*
70765747 GAAAGTATCATTGGTCTGCTTGGGTTAAATTC
1 GAAAGTATCATTGGTCTGCTTAGGTTAAATTC
*
70765779 GAAAGTATCATTGGTCTGTTTAGGTTAAATTC
1 GAAAGTATCATTGGTCTGCTTAGGTTAAATTC
70765811 AACATTGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (32 bp):
GAAAGTATCATTGGTCTGCTTAGGTTAAATTC
Found at i:70768054 original size:27 final size:27
Alignment explanation
Indices: 70768035--70768284 Score: 356
Period size: 27 Copynumber: 9.3 Consensus size: 27
70768025 CAATTTGTAA
* *
70768035 AATTACCGTTTTACCCTCAATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
70768062 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
70768089 AATTACCATTTTACCCTCAATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
70768116 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
70768143 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
70768170 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
* * *
70768197 AATTACCATTTTACCCTCAATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
* * *
70768224 AATTACTGTTTTACCCTTGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
70768251 AATTATCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
70768278 AATTACC
1 AATTACC
70768285 AAAATACCCT
Statistics
Matches: 202, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 202 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAG
Found at i:70768101 original size:54 final size:54
Alignment explanation
Indices: 70768035--70768312 Score: 367
Period size: 54 Copynumber: 5.1 Consensus size: 54
70768025 CAATTTGTAA
*
70768035 AATTACCGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAG
* *
70768089 AATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAG
* * *
70768143 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAG
* * ** * *
70768197 AATTACCATTTTACCCTCAATTTACAAAATTACTGTTTTACCCTTGATTTATAG
1 AATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAG
* * * *** * * *
70768251 AATTATCGTTTTACCCTCGATTTATAGAATTACCAAAATACCCTTGGTTTACAA
1 AATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAG
70768305 AATTACCA
1 AATTACCA
70768313 AAATATCCTC
Statistics
Matches: 192, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 192 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.38
Consensus pattern (54 bp):
AATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAG
Found at i:70768413 original size:81 final size:81
Alignment explanation
Indices: 70768269--70768453 Score: 201
Period size: 81 Copynumber: 2.3 Consensus size: 81
70768259 TTTTACCCTC
* * * *
70768269 GATTTATAGAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATATCCTCGATCAGTAAAA
1 GATTTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAA
*
70768334 TTACCAAAATACCCCT
66 TTACCAAAATACCCAT
* * ** * * * *
70768350 GGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCCTGGCT-TGTAAA
1 GATTTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAA
*
70768414 ATTATCAAAATACCCAT
65 ATTACCAAAATACCCAT
* * *
70768431 GATTTGTGAAATTATCGAAATAC
1 GATTTGTAAAATTACCAAAATAC
70768454 TCTCGATTTG
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
81 79 0.94
82 5 0.06
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.30
Consensus pattern (81 bp):
GATTTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAA
TTACCAAAATACCCAT
Found at i:70768437 original size:27 final size:27
Alignment explanation
Indices: 70768264--70768469 Score: 182
Period size: 27 Copynumber: 7.6 Consensus size: 27
70768254 TATCGTTTTA
* *
70768264 CCCTCGATTTATAGAATTACCAAAATAC
1 CCCT-GATTTGTAAAATTACCAAAATAC
* * **
70768292 CCTTGGTTTACAAAATTACCAAAATA-
1 CCCTGATTTGTAAAATTACCAAAATAC
* **
70768318 TCCTCGATCAGTAAAATTACCAAAATAC
1 CCCT-GATTTGTAAAATTACCAAAATAC
* *
70768346 CCCTGGTTTGTAAAATTACTAAAATAC
1 CCCTGATTTGTAAAATTACCAAAATAC
* *
70768373 CCCTGGTTTGTAAAATTACCGAAATAC
1 CCCTGATTTGTAAAATTACCAAAATAC
** *
70768400 CCCTGGCTTGTAAAATTATCAAAATAC
1 CCCTGATTTGTAAAATTACCAAAATAC
* * * *
70768427 CCATGATTTGTGAAATTATCGAAATA-
1 CCCTGATTTGTAAAATTACCAAAATAC
*
70768453 CTCTCGATTTGTAAAAT
1 CCCT-GATTTGTAAAAT
70768470 ATCGAAATAC
Statistics
Matches: 146, Mismatches: 29, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.03
27 136 0.93
28 6 0.04
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
CCCTGATTTGTAAAATTACCAAAATAC
Found at i:70768503 original size:27 final size:27
Alignment explanation
Indices: 70768472--70768662 Score: 256
Period size: 27 Copynumber: 7.0 Consensus size: 27
70768462 TGTAAAATAT
*
70768472 CGAAATACCTCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
70768499 TGAAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
70768526 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70768553 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
70768580 CGAAATACCCTTATAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
70768607 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
70768634 CGAGATACCCTTGTGGGGTAAAAATTAC
1 CGAAATACCCCTGTAGGGT-AGAATTAC
70768662 C
1 C
70768663 ATTTTGCCCC
Statistics
Matches: 142, Mismatches: 21, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
27 134 0.94
28 8 0.06
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:70768914 original size:25 final size:25
Alignment explanation
Indices: 70768880--70768958 Score: 131
Period size: 25 Copynumber: 3.2 Consensus size: 25
70768870 GGTTATGCCT
70768880 AGTTTACCGAAAAGGGCTTTGCCCC
1 AGTTTACCGAAAAGGGCTTTGCCCC
*
70768905 AGTTTACCGAAAAGGGCTTTTCCCC
1 AGTTTACCGAAAAGGGCTTTGCCCC
* *
70768930 AGTTTATCAAAAAGGGCTTTGCCCC
1 AGTTTACCGAAAAGGGCTTTGCCCC
70768955 AGTT
1 AGTT
70768959 ATTAAAAGAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (25 bp):
AGTTTACCGAAAAGGGCTTTGCCCC
Found at i:70768971 original size:24 final size:24
Alignment explanation
Indices: 70768880--70768971 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 24
70768870 GGTTATGCCT
*
70768880 AGTTTACCGAAAAGGGCTTTGCCCC
1 AGTTTATC-AAAAGGGCTTTGCCCC
* *
70768905 AGTTTACCGAAAAGGGCTTTTCCCC
1 AGTTTATC-AAAAGGGCTTTGCCCC
70768930 AGTTTATCAAAAAGGGCTTTGCCCC
1 AGTTTATC-AAAAGGGCTTTGCCCC
*
70768955 AG-TTATTAAAAGAGGCT
1 AGTTTATCAAAAG-GGCT
70768972 AGGTCTCTAG
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
23 5 0.08
24 8 0.13
25 48 0.79
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AGTTTATCAAAAGGGCTTTGCCCC
Found at i:70774935 original size:2 final size:2
Alignment explanation
Indices: 70774925--70774979 Score: 85
Period size: 2 Copynumber: 28.0 Consensus size: 2
70774915 TTTTGGTTTG
* *
70774925 TA TA T- TA TA TA TA TA TA CA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
70774966 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
70774980 CGTCAATGGT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:70784257 original size:20 final size:20
Alignment explanation
Indices: 70784217--70784345 Score: 125
Period size: 20 Copynumber: 6.5 Consensus size: 20
70784207 TGATATTTAA
**
70784217 GGCTTTGTGCCACTA-TGAT
1 GGCTTTGTGCTGCTATTGAT
*
70784236 GGCTTTGTGCTGTTATTGAT
1 GGCTTTGTGCTGCTATTGAT
*
70784256 GGCTTTGTGCTGCTATGGAT
1 GGCTTTGTGCTGCTATTGAT
* *
70784276 GGCTTTGTGTTGCTATTGAC
1 GGCTTTGTGCTGCTATTGAT
* **
70784296 AGCTTTGTGCCACTATTGAT
1 GGCTTTGTGCTGCTATTGAT
* * * *
70784316 GGCTTGGTACCGCCATTGAT
1 GGCTTTGTGCTGCTATTGAT
*
70784336 GGCTTCGTGC
1 GGCTTTGTGC
70784346 CATATACTGA
Statistics
Matches: 89, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
19 12 0.13
20 77 0.87
ACGTcount: A:0.12, C:0.19, G:0.29, T:0.40
Consensus pattern (20 bp):
GGCTTTGTGCTGCTATTGAT
Found at i:70784969 original size:20 final size:20
Alignment explanation
Indices: 70784932--70784970 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70784922 GTTTAAAAAG
*
70784932 TAATGAAAATTTAAAATGAA
1 TAATGAAAATCTAAAATGAA
* *
70784952 TAATGAATATCTAGAATGA
1 TAATGAAAATCTAAAATGA
70784971 TTTGAGATCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.31
Consensus pattern (20 bp):
TAATGAAAATCTAAAATGAA
Found at i:70789911 original size:12 final size:11
Alignment explanation
Indices: 70789894--70789923 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
70789884 TATACAAGTT
70789894 AAAAAAAATTC
1 AAAAAAAATTC
70789905 GAAAAAAAATTC
1 -AAAAAAAATTC
70789917 AAAAAAA
1 AAAAAAA
70789924 TAGAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:70795412 original size:13 final size:13
Alignment explanation
Indices: 70795394--70795418 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70795384 TAACCTACAA
70795394 AATTAAATAACAT
1 AATTAAATAACAT
70795407 AATTAAATAACA
1 AATTAAATAACA
70795419 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:70795682 original size:21 final size:19
Alignment explanation
Indices: 70795640--70795690 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
70795630 ATGAAAAAGG
*
70795640 AATGAGCTGAAACGAGCTA
1 AATGAGCTCAAACGAGCTA
70795659 AATTCGAGCTCAAAC-AGCTAA
1 AA-T-GAGCTCAAACGAGCT-A
70795680 AATGAGCTCAA
1 AATGAGCTCAA
70795691 GTGAGCTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 10 0.36
20 6 0.21
21 12 0.43
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.18
Consensus pattern (19 bp):
AATGAGCTCAAACGAGCTA
Found at i:70797807 original size:30 final size:29
Alignment explanation
Indices: 70797752--70797815 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
70797742 TTTTTCAATT
* *
70797752 TCTTTTTCACTCTCAAATTTCTTTTCGTTC
1 TCTTTTTCAATCTCAAATCTCTTTTC-TTC
*
70797782 TCTTTTTCAATCTC-AATCTCATTTTCTTT
1 TCTTTTTCAATCTCAAATCTC-TTTTCTTC
70797811 TCTTT
1 TCTTT
70797816 GTTTTTCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (29 bp):
TCTTTTTCAATCTCAAATCTCTTTTCTTC
Found at i:70797830 original size:19 final size:20
Alignment explanation
Indices: 70797806--70797846 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
70797796 AATCTCATTT
70797806 TCTTTTCTTTGTTT-TTCTC
1 TCTTTTCTTTGTTTCTTCTC
70797825 TCTTTTCTTTGTTTCTTCTC
1 TCTTTTCTTTGTTTCTTCTC
70797845 TC
1 TC
70797847 GATTTCATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (20 bp):
TCTTTTCTTTGTTTCTTCTC
Found at i:70800292 original size:20 final size:21
Alignment explanation
Indices: 70800245--70800285 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
70800235 ATGAGCTGAG
*
70800245 ACGAGCTAAATTCGAGCTCAA
1 ACGAGCTAAATACGAGCTCAA
70800266 ACGAGCTAAA-ACGAGCTCAA
1 ACGAGCTAAATACGAGCTCAA
70800286 GTGAGCTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (21 bp):
ACGAGCTAAATACGAGCTCAA
Found at i:70802398 original size:26 final size:26
Alignment explanation
Indices: 70802362--70802471 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
70802352 TGATACAAAT
*
70802362 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
70802388 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
70802414 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
70802440 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
70802466 TGATAA
1 TGATAA
70802472 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:70814377 original size:43 final size:43
Alignment explanation
Indices: 70814324--70814422 Score: 171
Period size: 43 Copynumber: 2.3 Consensus size: 43
70814314 ATCTATTGGT
* *
70814324 ACTAAGTGTGCGATACAATTATAGCTTCGGCTAGTTAATTTGC
1 ACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAATTAGC
*
70814367 ACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAATTAGT
1 ACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAATTAGC
70814410 ACTAAGTGTGCGA
1 ACTAAGTGTGCGA
70814423 GTTTATTGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (43 bp):
ACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAATTAGC
Found at i:70819931 original size:27 final size:27
Alignment explanation
Indices: 70819899--70820003 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
70819889 CTGCCAGGAT
* *
70819899 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
* *
70819926 AAATAATCGTGGCAGAGCCACCA-AAAC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
70819953 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
* *
70819980 AGATAATTGTGGCATAGGCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
70820004 GACGCTTCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.02
27 49 0.74
28 16 0.24
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:70819993 original size:54 final size:54
Alignment explanation
Indices: 70819899--70820002 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
70819889 CTGCCAGGAT
*
70819899 AGATAATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAGCCACCAAAAC
1 AGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCAAAAC
* * * * *
70819953 AGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGGCACCA
1 AGATA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCA
70820003 GGACGCTTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 25 0.58
55 18 0.42
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (54 bp):
AGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCAAAAC
Found at i:70821429 original size:25 final size:24
Alignment explanation
Indices: 70821393--70821452 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 24
70821383 CCAACACTGC
*
70821393 TCTCCCTAATCAGCTCCTAAAACT
1 TCTCCCTTATCAGCTCCTAAAACT
* *
70821417 TCTCCCCTTATCATCTCCTAAATCT
1 TCT-CCCTTATCAGCTCCTAAAACT
70821442 TCTCCCTTATC
1 TCTCCCTTATC
70821453 CCCTCCTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 11 0.34
25 21 0.66
ACGTcount: A:0.22, C:0.40, G:0.02, T:0.37
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAAACT
Found at i:70821458 original size:24 final size:25
Alignment explanation
Indices: 70821396--70821459 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
70821386 ACACTGCTCT
* *
70821396 CCCTAATCAGCTCCTAAAACTTCTC
1 CCCTTATCACCTCCTAAAACTTCTC
* *
70821421 CCCTTATCATCTCCTAAATCTTCT-
1 CCCTTATCACCTCCTAAAACTTCTC
*
70821445 CCCTTATCCCCTCCT
1 CCCTTATCACCTCCT
70821460 TACTCAATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 13 0.38
25 21 0.62
ACGTcount: A:0.20, C:0.44, G:0.02, T:0.34
Consensus pattern (25 bp):
CCCTTATCACCTCCTAAAACTTCTC
Found at i:70825796 original size:68 final size:67
Alignment explanation
Indices: 70825724--70825873 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70825714 CATCATGTGT
* * * *
70825724 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70825786 ATGTAG
62 ATGTAG
** * *
70825792 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70825857 AG
66 AG
70825859 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70825874 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:70825829 original size:64 final size:64
Alignment explanation
Indices: 70825748--70825931 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70825738 AGACATTATG
* *
70825748 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70825812 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70825877 AA
63 AA
* * * *
70825879 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
70825932 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70827017 original size:2 final size:2
Alignment explanation
Indices: 70827010--70827042 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
70827000 TCATGACATG
70827010 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70827043 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70831309 original size:27 final size:27
Alignment explanation
Indices: 70831278--70831381 Score: 131
Period size: 27 Copynumber: 3.8 Consensus size: 27
70831268 AGCTACCAGG
* *
70831278 ACAGATAATGTGACACAGTCACCAGAT
1 ACAGATAATGTGGCACAGCCACCAGAT
*
70831305 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCACAGCCACCAGAT
*
70831332 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCACAGCCACCAGAT
70831360 -CAGATAATTGTGGCACAGCCAC
1 ACAGATAA-TGTGGCACAGCCAC
70831382 TAGGACGCTT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.01
27 52 0.75
28 16 0.23
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (27 bp):
ACAGATAATGTGGCACAGCCACCAGAT
Found at i:70831364 original size:54 final size:54
Alignment explanation
Indices: 70831272--70831381 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
70831262 CAGCATAGCT
* * *
70831272 ACCAGGACAGATAATGTGACACAGTCACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATAATGTGACACAGCCACCAGATACAGATAATCGTGGCACAGCC
* * *
70831326 ACCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCACAGCC
1 ACCAGAACAGATA-ATGTGACACAGCCACCAGATACAGATAATCGTGGCACAGCC
70831380 AC
1 AC
70831382 TAGGACGCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGACACAGCCACCAGATACAGATAATCGTGGCACAGCC
Found at i:70832938 original size:43 final size:43
Alignment explanation
Indices: 70832885--70832988 Score: 154
Period size: 43 Copynumber: 2.4 Consensus size: 43
70832875 GGTTTAATCT
*
70832885 ATTGGCACTAAGTGTGCGGTACAATTATAGCTTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
* *
70832928 ATTGGCACTAAGTGTGTGATACAATTATAGCTTCGGTTAATTA
1 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
*
70832971 ATTAGCACACTAAGTGTG
1 ATT-G-GCACTAAGTGTG
70832989 TGAGTTTATT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 43 0.78
44 1 0.02
45 11 0.20
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTA
Found at i:70834098 original size:10 final size:10
Alignment explanation
Indices: 70834059--70834108 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
70834049 AGCGCCAAAC
*
70834059 AGCTCACTTG
1 AGCTCATTTG
*
70834069 AGCTCGTTTG
1 AGCTCATTTG
*
70834079 AGCTCAATTTT
1 AGCTC-ATTTG
*
70834090 AGCTCATTTC
1 AGCTCATTTG
70834100 AGCTCATTT
1 AGCTCATTT
70834109 CTTTTCCTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
10 26 0.76
11 8 0.24
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (10 bp):
AGCTCATTTG
Found at i:70835275 original size:19 final size:19
Alignment explanation
Indices: 70835251--70835292 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
70835241 CTTTTCTACC
70835251 CTTAGAACCTATCACTATT
1 CTTAGAACCTATCACTATT
70835270 CTTAGAACCTATCACTATT
1 CTTAGAACCTATCACTATT
70835289 CTTA
1 CTTA
70835293 CACTTATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (19 bp):
CTTAGAACCTATCACTATT
Found at i:70835651 original size:12 final size:13
Alignment explanation
Indices: 70835634--70835662 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
70835624 TTTTTGGAAA
70835634 GTATGT-TTTATG
1 GTATGTATTTATG
70835646 GTATGTATTTATG
1 GTATGTATTTATG
70835659 GTAT
1 GTAT
70835663 AATCTTGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (13 bp):
GTATGTATTTATG
Found at i:70837287 original size:12 final size:11
Alignment explanation
Indices: 70837265--70837294 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
70837255 GCAATGAAAC
70837265 TTTTCTTTTCA
1 TTTTCTTTTCA
70837276 TTTTCATTTTCA
1 TTTTC-TTTTCA
70837288 TTTTCTT
1 TTTTCTT
70837295 GTTTTCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTCTTTTCA
Found at i:70837357 original size:13 final size:11
Alignment explanation
Indices: 70837310--70837384 Score: 66
Period size: 11 Copynumber: 6.8 Consensus size: 11
70837300 CTTCTCTCAT
*
70837310 TTTCTCTTTTC
1 TTTCTTTTTTC
*
70837321 TTTC-TTTTGC
1 TTTCTTTTTTC
* *
70837331 TAT-TTTTTGC
1 TTTCTTTTTTC
70837341 TTTCTTTTTCTC
1 TTTCTTTTT-TC
70837353 ATTTCTTTTTTC
1 -TTTCTTTTTTC
70837365 TTT-TTCTTTTC
1 TTTCTT-TTTTC
70837376 TTTCTTTTT
1 TTTCTTTTT
70837385 CAACTTCATT
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
10 16 0.30
11 23 0.43
12 5 0.09
13 9 0.17
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.76
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:70837383 original size:20 final size:20
Alignment explanation
Indices: 70837265--70837383 Score: 63
Period size: 20 Copynumber: 5.9 Consensus size: 20
70837255 GCAATGAAAC
*
70837265 TTTTCTTTTCATTTTCATTTTCA
1 TTTTCTTTTC--TTTC-TTTTCT
*
70837288 TTTTCTTGT-TTTCTTCTCTCAT
1 TTTTCTTTTCTTTCTT-T-TC-T
70837310 TTTCTCTTTTCTTTCTTTTGCT
1 TTT-TCTTTTCTTTCTTTT-CT
* *
70837332 ATTT-TTTGCTTTC--TT-T
1 TTTTCTTTTCTTTCTTTTCT
* *
70837348 TTCTCATTTC-TT-TTTTCT
1 TTTTCTTTTCTTTCTTTTCT
70837366 TTTTCTTTTCTTTCTTTT
1 TTTTCTTTTCTTTCTTTT
70837384 TCAACTTCAT
Statistics
Matches: 73, Mismatches: 11, Indels: 27
0.66 0.10 0.24
Matches are distributed among these distances:
16 5 0.07
17 5 0.07
18 11 0.15
19 4 0.05
20 17 0.23
21 3 0.04
22 7 0.10
23 15 0.21
24 6 0.08
ACGTcount: A:0.05, C:0.19, G:0.03, T:0.73
Consensus pattern (20 bp):
TTTTCTTTTCTTTCTTTTCT
Found at i:70837961 original size:6 final size:6
Alignment explanation
Indices: 70837950--70837982 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
70837940 TTGTTTCGGC
*
70837950 CTTGTT CTTGTT CTTTTT CTTGTT CTTGTT CTT
1 CTTGTT CTTGTT CTTGTT CTTGTT CTTGTT CTT
70837983 TTTTCTATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.18, G:0.12, T:0.70
Consensus pattern (6 bp):
CTTGTT
Found at i:70837973 original size:18 final size:18
Alignment explanation
Indices: 70837950--70837985 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70837940 TTGTTTCGGC
70837950 CTTGTTCTTGTTCTTTTT
1 CTTGTTCTTGTTCTTTTT
70837968 CTTGTTCTTGTTCTTTTT
1 CTTGTTCTTGTTCTTTTT
70837986 TCTATCCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.17, G:0.11, T:0.72
Consensus pattern (18 bp):
CTTGTTCTTGTTCTTTTT
Found at i:70845570 original size:43 final size:43
Alignment explanation
Indices: 70845522--70845839 Score: 219
Period size: 43 Copynumber: 7.5 Consensus size: 43
70845512 AGATATCGTG
* * * *
70845522 TAAGACCGTGTCTAGGACATAGCCCTCGATTGAGATTTATGTA
1 TAAGACCATGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
* * *
70845565 TAAGACCATGTCTGGGACATCGGCATCGTATCT--GATTT-CGTG
1 TAAGACCATGTCTGGGACATAGGCCTCG-AT-TGAGATTTACGTA
* *
70845607 TAAGACCATGCCTGGGACACAGGCCTCGATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
* * * *
70845650 TAAGACCATGTTTGGGACATTGGCATCGTATCT-A-ATTT-CGTG
1 TAAGACCATGTCTGGGACATAGGCCTCG-AT-TGAGATTTACGTA
* * * * * *
70845692 TGAGACCCTATCTAGGACACAGGCCTCGATTGAAATTTACGTA
1 TAAGACCATGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
* * * *
70845735 TAAGACCATGTCTGGGACATCGGCATTGTATCT-A-ATTT-CGTG
1 TAAGACCATGTCTGGGACATAGGCCTCG-AT-TGAGATTTACGTA
* * * *
70845777 TAAGACCCTGTCTGGGAC-TGAGGCATCGATAATGA-A-TTACATG
1 TAAGACCATGTCTGGGACAT-AGGCCTCGAT--TGAGATTTACGTA
*
70845820 TAAGACCACGTCTGGGACAT
1 TAAGACCATGTCTGGGACAT
70845840 TGGCATTATA
Statistics
Matches: 215, Mismatches: 43, Indels: 33
0.74 0.15 0.11
Matches are distributed among these distances:
40 2 0.01
41 8 0.04
42 87 0.40
43 106 0.49
44 9 0.04
45 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATAGGCCTCGATTGAGATTTACGTA
Found at i:70845660 original size:85 final size:85
Alignment explanation
Indices: 70845517--70845845 Score: 428
Period size: 85 Copynumber: 3.9 Consensus size: 85
70845507 GTCTGAGATA
* * * *
70845517 TCGTGTAAGACCGTGTCTAGGACATAGCCCTCGATTGAGATTTATGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTAGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
*
70845582 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTAATT
* * * *
70845602 TCGTGTAAGACCATGCCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTTTGGGA
1 TCGTGTAAGACCCTGTCTAGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
*
70845667 CATTGGCATCGTATCTAATT
66 CATCGGCATCGTATCTAATT
* * *
70845687 TCGTGTGAGACCCTATCTAGGACACAGGCCTCGATTGAAATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTAGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
*
70845752 CATCGGCATTGTATCTAATT
66 CATCGGCATCGTATCTAATT
* ** * * * *
70845772 TCGTGTAAGACCCTGTCTGGGACTGAGGCATCGATAATGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAAGACCCTGTCTAGGACACAGGCCTCGAT--TGAGATTTACGTATAAGACCATGTCTGG
*
70845835 GACATTGGCAT
64 GACATCGGCAT
70845846 TATACTTGAT
Statistics
Matches: 214, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
85 210 0.98
86 1 0.00
87 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTAGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
CATCGGCATCGTATCTAATT
Found at i:70849157 original size:25 final size:24
Alignment explanation
Indices: 70849123--70849176 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
70849113 TATATGTGTT
* * *
70849123 TTAATATGTCTGGTTTAGGACATAA
1 TTAATATGTCTAGATTAGAACA-AA
*
70849148 TTAATGTGTCTAGATTAGAACAAA
1 TTAATATGTCTAGATTAGAACAAA
70849172 TTAAT
1 TTAAT
70849177 TAGCTGCTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (24 bp):
TTAATATGTCTAGATTAGAACAAA
Found at i:70850494 original size:25 final size:24
Alignment explanation
Indices: 70850425--70850494 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
70850415 CTCAAAATTT
70850425 TAATT-AATAAA--AAAATATTA-A
1 TAATTCAATAAATTAAAAT-TTAGA
*
70850446 TAATTCAATAAATTAAGAAATTAGA
1 TAATTCAATAAATTAA-AATTTAGA
*
70850471 TAATTGAATAAAATTAAAATTTAG
1 TAATTCAAT-AAATTAAAATTTAG
70850495 GAGAAAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
21 5 0.12
22 6 0.15
24 5 0.12
25 17 0.43
26 7 0.17
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.34
Consensus pattern (24 bp):
TAATTCAATAAATTAAAATTTAGA
Found at i:70856476 original size:20 final size:20
Alignment explanation
Indices: 70856447--70856516 Score: 104
Period size: 20 Copynumber: 3.5 Consensus size: 20
70856437 ACAAGATGTA
70856447 GGGTAGAAGTGGACCTATAT
1 GGGTAGAAGTGGACCTATAT
* * *
70856467 GGGTAAAAGTGGACTTGTAT
1 GGGTAGAAGTGGACCTATAT
*
70856487 GGATAGAAGTGGACCTATAT
1 GGGTAGAAGTGGACCTATAT
70856507 GGGTAGAAGT
1 GGGTAGAAGT
70856517 CTCAAAAGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.07, G:0.36, T:0.26
Consensus pattern (20 bp):
GGGTAGAAGTGGACCTATAT
Found at i:70857566 original size:22 final size:25
Alignment explanation
Indices: 70857541--70857592 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 25
70857531 CTCTTAAAAC
70857541 TAATTAT-AAATTATAT-TAATAT-
1 TAATTATAAAATTATATATAATATG
*
70857563 TAA-TATAAAATTATATATGATATG
1 TAATTATAAAATTATATATAATATG
70857587 TAATTA
1 TAATTA
70857593 CTTTTAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 3 0.12
22 12 0.48
23 5 0.20
24 3 0.12
25 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (25 bp):
TAATTATAAAATTATATATAATATG
Found at i:70858190 original size:22 final size:24
Alignment explanation
Indices: 70858135--70858191 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 24
70858125 ATTCTTTTTT
*
70858135 TATATAATTTTACTTCTTTTAAGGCA
1 TATATAATTTTACTTATTTTAA-G-A
70858161 TATATAATTTTACTTATTTTAA-A
1 TATATAATTTTACTTATTTTAAGA
70858184 TA-ATAATT
1 TATATAATT
70858192 ATTTATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 6 0.20
23 3 0.10
26 21 0.70
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.53
Consensus pattern (24 bp):
TATATAATTTTACTTATTTTAAGA
Found at i:70858579 original size:20 final size:20
Alignment explanation
Indices: 70858556--70858605 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
70858546 AAATCCAAAT
70858556 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
* *
70858576 TAAAATCCTAAAATTCAGTA
1 TAAAATACTAAAATTCAGGA
70858596 TAAGAATACT
1 TAA-AATACT
70858606 GATGTGGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:70861229 original size:47 final size:47
Alignment explanation
Indices: 70861175--70861415 Score: 392
Period size: 47 Copynumber: 5.1 Consensus size: 47
70861165 TTAGGATTTT
** * *
70861175 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70861222 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70861269 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70861316 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
70861363 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70861410 ATGTGA
1 ATGTGA
70861416 AATATGTATG
Statistics
Matches: 182, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:70861250 original size:25 final size:25
Alignment explanation
Indices: 70861222--70861300 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
70861212 CGAATGGCCA
70861222 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
70861247 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
70861269 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
70861294 ATGTGAT
1 ATGTGAT
70861301 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:70861478 original size:50 final size:48
Alignment explanation
Indices: 70861385--70861667 Score: 426
Period size: 48 Copynumber: 5.8 Consensus size: 48
70861375 TGAACATGCA
70861385 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
70861433 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* * *
70861483 TATATGTGGCAAAACCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
70861531 TATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
70861581 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
70861629 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
70861668 GGCGATGTGC
Statistics
Matches: 214, Mismatches: 13, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
47 2 0.01
48 121 0.57
49 8 0.04
50 81 0.38
51 2 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:70861683 original size:98 final size:98
Alignment explanation
Indices: 70861385--70861664 Score: 499
Period size: 98 Copynumber: 2.9 Consensus size: 98
70861375 TGAACATGCA
* *
70861385 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
70861450 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
* *
70861483 TATATGTGGCAAAACCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
70861548 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
70861581 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
70861646 AATGG-CTAGTGTGAAATAT
66 AATGGTC-AATGTGAAATAT
70861665 GTAGGCGATG
Statistics
Matches: 174, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
97 1 0.01
98 173 0.99
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGTCAATGTGAAATATATATATGAGATATG
Found at i:70861869 original size:37 final size:37
Alignment explanation
Indices: 70861814--70861921 Score: 198
Period size: 37 Copynumber: 2.9 Consensus size: 37
70861804 GGAAATATAT
*
70861814 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
70861851 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
70861888 TCCGGGTAAGACCTGATGACTACGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
70861922 TCGTCTGAGC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:70863430 original size:23 final size:23
Alignment explanation
Indices: 70863324--70863430 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 23
70863314 ATGTACCCGG
70863324 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
70863347 GCT-AGT---G-A-CGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
70863364 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * *
70863387 GCT-AGT---G-A-CGTATTCGG
1 GCTAAGTCCCGAAGAGCATTCGT
70863404 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
70863427 GCTA
1 GCTA
70863431 GTGACGTATC
Statistics
Matches: 58, Mismatches: 14, Indels: 24
0.60 0.15 0.25
Matches are distributed among these distances:
17 17 0.29
18 8 0.14
19 2 0.03
21 2 0.03
22 8 0.14
23 21 0.36
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:70863633 original size:40 final size:40
Alignment explanation
Indices: 70863191--70863621 Score: 684
Period size: 40 Copynumber: 10.8 Consensus size: 40
70863181 GAGAATTGAG
* *
70863191 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTG-T
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70863230 AGTGACGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70863270 AGTGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70863310 AGTGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70863350 AGTGACGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
70863390 AGTGACGTATTCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
70863430 AGTGACGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70863470 AGTGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70863510 AGTGACGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
70863550 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
70863590 GGTGTTATATCCGGGCTAGGTCCCAAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
70863622 ATCATGCTGG
Statistics
Matches: 368, Mismatches: 23, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 35 0.10
40 333 0.90
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:70867551 original size:47 final size:47
Alignment explanation
Indices: 70867497--70867737 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
70867487 TTAGGATTTT
** * *
70867497 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70867544 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70867591 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70867638 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
70867685 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAGTGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70867732 ATGTGA
1 ATGTGA
70867738 AATATGTATG
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:70867572 original size:25 final size:25
Alignment explanation
Indices: 70867544--70867622 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
70867534 CGAATGGCCA
70867544 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
70867569 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
70867591 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
70867616 ATGTGAT
1 ATGTGAT
70867623 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:70867767 original size:48 final size:48
Alignment explanation
Indices: 70867707--70867987 Score: 431
Period size: 48 Copynumber: 5.8 Consensus size: 48
70867697 TGAACATGCA
*
70867707 TATATGTGGTAAAGCCGAGTGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
70867755 CATATGTGGTAAAGCCGAATGG-TCAACGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTATGAGATATG
* *
70867803 TATATGTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
70867851 TATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
70867901 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
70867949 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
70867988 GGCGATGTGC
Statistics
Matches: 213, Mismatches: 14, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
47 2 0.01
48 163 0.77
49 5 0.02
50 42 0.20
51 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:70867920 original size:146 final size:144
Alignment explanation
Indices: 70867707--70867987 Score: 449
Period size: 146 Copynumber: 1.9 Consensus size: 144
70867697 TGAACATGCA
* *
70867707 TATATGTGGTAAAGCCGAGTGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCATATGTGGTAAAGCCG
70867772 AATGG-TCAACGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGAAA
66 AATGGCT-AACGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGAAA
70867836 TATGTATGAGATATG
130 TATGTATGAGATATG
*
70867851 TATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGCATATGTGGTAAAG
** * *
70867915 CCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
63 CCGAATGGCTAACGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGA
70867980 AATATGTA
128 AATATGTA
70867988 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
143 1 0.01
144 27 0.21
145 2 0.02
146 95 0.75
147 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.30
Consensus pattern (144 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCATATGTGGTAAAGCCG
AATGGCTAACGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGAAAT
ATGTATGAGATATG
Found at i:70867945 original size:98 final size:98
Alignment explanation
Indices: 70867707--70867984 Score: 472
Period size: 98 Copynumber: 2.9 Consensus size: 98
70867697 TGAACATGCA
* * *
70867707 TATATGTGGTAAAGCCGAGTGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
70867772 AATGGTCAACGTG-AA-ATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
*
70867803 TATATGTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
70867868 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
70867901 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
70867966 AATGG-CTAGTGTGAAATAT
66 AATGGTC-AATGTGAAATAT
70867985 GTAGGCGATG
Statistics
Matches: 172, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
96 73 0.42
97 3 0.02
98 96 0.56
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGTCAATGTGAAATATATATATGAGATATG
Found at i:70868184 original size:37 final size:37
Alignment explanation
Indices: 70868134--70868241 Score: 207
Period size: 37 Copynumber: 2.9 Consensus size: 37
70868124 GGAAATATAT
70868134 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
70868171 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
70868208 TCCAGGTAAGACCCGATGACTACGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
70868242 TCGTCTGAGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:70869404 original size:8 final size:8
Alignment explanation
Indices: 70869391--70869445 Score: 65
Period size: 8 Copynumber: 6.5 Consensus size: 8
70869381 TTTAATTTAG
70869391 AATATAAA
1 AATATAAA
70869399 AATATAAA
1 AATATAAA
70869407 AATATAAA
1 AATATAAA
*
70869415 AATAATTGGAA
1 AAT-A-T-AAA
*
70869426 AGTATAAA
1 AATATAAA
70869434 AATATAAA
1 AATATAAA
70869442 AATA
1 AATA
70869446 ATTGGAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 32 0.80
9 2 0.05
10 2 0.05
11 4 0.10
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.25
Consensus pattern (8 bp):
AATATAAA
Found at i:70869432 original size:27 final size:27
Alignment explanation
Indices: 70869401--70869466 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
70869391 AATATAAAAA
70869401 TATAAAAATATAAAAATAATTGGAAAG
1 TATAAAAATATAAAAATAATTGGAAAG
*
70869428 TATAAAAATATAAAAATAATTGGAAAT
1 TATAAAAATATAAAAATAATTGGAAAG
70869455 TATAACAAATAT
1 TATAA-AAATAT
70869467 GTATACTAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 31 0.84
28 6 0.16
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (27 bp):
TATAAAAATATAAAAATAATTGGAAAG
Found at i:70875496 original size:28 final size:29
Alignment explanation
Indices: 70875456--70875554 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
70875446 GTAATAAGCC
*
70875456 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
70875484 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
70875512 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
70875541 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70875555 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:70878802 original size:58 final size:59
Alignment explanation
Indices: 70878708--70878824 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 59
70878698 CTCCATCGAA
70878708 GTTTCCATATTGCATGTTCTCTTTAACCCCTGATTCAATATCACCTGAAACAGAAAAAG
1 GTTTCCATATTGCATGTTCTCTTTAACCCCTGATTCAATATCACCTGAAACAGAAAAAG
* * *
70878767 GTTTTCATATTGCATGTT-TCTTTAACCCCTGATTCAATGTCACTTGAAACAGAAAAAG
1 GTTTCCATATTGCATGTTCTCTTTAACCCCTGATTCAATATCACCTGAAACAGAAAAAG
70878825 AAGCAGTGGA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 38 0.69
59 17 0.31
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (59 bp):
GTTTCCATATTGCATGTTCTCTTTAACCCCTGATTCAATATCACCTGAAACAGAAAAAG
Found at i:70888501 original size:22 final size:22
Alignment explanation
Indices: 70888473--70888516 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
70888463 ATATTTTAAG
70888473 TATCAAACAACCATTAATTACT
1 TATCAAACAACCATTAATTACT
70888495 TATCAAACAACCATTAATTACT
1 TATCAAACAACCATTAATTACT
70888517 AGTAGCAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (22 bp):
TATCAAACAACCATTAATTACT
Found at i:70898593 original size:22 final size:22
Alignment explanation
Indices: 70898558--70898600 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
70898548 CCCACATTTT
70898558 ACATTTATTCACACTTTACAAC
1 ACATTTATTCACACTTTACAAC
70898580 ACATTT-TTCAACACTTTACAA
1 ACATTTATTC-ACACTTTACAA
70898601 ATGTCCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (22 bp):
ACATTTATTCACACTTTACAAC
Found at i:70901055 original size:55 final size:55
Alignment explanation
Indices: 70900911--70901120 Score: 209
Period size: 55 Copynumber: 3.9 Consensus size: 55
70900901 AGTATCTTTT
* * * *
70900911 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGAATCCTTGCCTTA-C
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGAATCCTTGCCTTATA
* * * * *
70900965 G-AACTCACTAATGCCATGCCTTGGCATGGTATTACATGGGA-CCTTTGCCTTATA
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGAATCC-TTGCCTTATA
* *
70901019 GAAACTTATCAATGCCATGTCC-TGAAATGGTCTTACAT-GATATCCTTGCC-T-TA
1 GAAACTTACCAATGCCATG-CCTTGACATGGTCTTACATGGA-ATCCTTGCCTTATA
* *
70901072 GAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 GAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGAATCCTT
70901121 AAACCCTAAT
Statistics
Matches: 126, Mismatches: 20, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
52 2 0.02
53 46 0.37
54 13 0.10
55 60 0.48
56 5 0.04
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (55 bp):
GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGAATCCTTGCCTTATA
Found at i:70901057 original size:108 final size:110
Alignment explanation
Indices: 70900911--70901113 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 110
70900901 AGTATCTTTT
* *
70900911 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGA-ATCCTTGCCTTACG-AA-CTCAC
1 GAAACTTACCAATGCCATGTCTCGAAATGGTCTTACAT-GATATCCTTGCCTTA-GAAACCTCAC
*
70900973 TAA-TGCCATGCCTTGGCATGGTATTACATGGGACCTTTGCCTTATA
64 CAATTGCCATGCCTTGGCATGGTATTACATGGGACCTTTGCCTTATA
* *
70901019 GAAACTTATCAATGCCATGTC-CTGAAATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACC
1 GAAACTTACCAATGCCATGTCTC-GAAATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACC
*
70901083 AATTGCCATGCCTTGGCATGGTCTTACATGG
65 AATTGCCATGCCTTGGCATGGTATTACATGG
70901114 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
107 4 0.05
108 47 0.56
109 6 0.07
110 27 0.32
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCGAAATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTATTACATGGGACCTTTGCCTTATA
Found at i:70911032 original size:40 final size:41
Alignment explanation
Indices: 70910934--70911037 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 41
70910924 TCGAATGATG
* *
70910934 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACTAAGTGACCAAA
* * *
70910974 TCCGGACTAAGGT-TCGAAGGCATTTGTAC-AAGTTACCAAA
1 TCCGGGCTAA-GTCCCGAAGGCATTTGTACTAAGTGACCAAA
*
70911014 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70911038 CGTGCGAGCT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.04
40 43 0.81
41 8 0.15
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACTAAGTGACCAAA
Found at i:70919045 original size:40 final size:40
Alignment explanation
Indices: 70918962--70919073 Score: 120
Period size: 40 Copynumber: 2.8 Consensus size: 40
70918952 TCGAATGATG
* * *
70918962 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* *
70919002 TCCGGACTAAGGT-TCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGACTAA-GTCCCGAAGGCATTTGTGCGAGTGACCAAA
** *
70919042 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAG
70919074 CTATTATAAC
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.03
40 49 0.82
41 9 0.15
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:70919087 original size:40 final size:40
Alignment explanation
Indices: 70918962--70919102 Score: 119
Period size: 40 Copynumber: 3.5 Consensus size: 40
70918952 TCGAATGATG
* * *
70918962 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGCT-ACCAAA
* * * *
70919002 TCCGGACTAAGGT-TCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCTAA-GTCCCGAAGGCATTCGTGCGAGCTACCAAA
* **
70919042 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACCA-AA
*
70919083 -CCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
70919103 TTTTGAGCGA
Statistics
Matches: 83, Mismatches: 13, Indels: 10
0.78 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 69 0.83
41 12 0.14
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACCAAA
Found at i:70920974 original size:40 final size:40
Alignment explanation
Indices: 70920873--70921060 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
70920863 TTCGAATGAT
* * * * * *
70920873 ATCCGAGCTAAGTCTCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
70920914 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
70920954 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
70920994 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
70921035 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
70921061 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 104 0.79
41 25 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:70921067 original size:80 final size:79
Alignment explanation
Indices: 70920930--70921093 Score: 224
Period size: 80 Copynumber: 2.1 Consensus size: 79
70920920 ACTAAGATCT
* **
70920930 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAA
*
70920994 ATCCGGGTTAAGTCCC
65 ATCC-GGTTAAATCCC
* *
70921010 GAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTAT
1 GAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAA
*
70921074 ATCCGGTTAAATTCC
65 ATCCGGTTAAATCCC
70921089 GAAGG
1 GAAGG
70921094 TACGTGATTC
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 57 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAA
TCCGGTTAAATCCC
Found at i:70927630 original size:887 final size:882
Alignment explanation
Indices: 70925937--70928257 Score: 2947
Period size: 887 Copynumber: 2.6 Consensus size: 882
70925927 AGTGAAAGAT
70925937 CACATGCTTTTCTTTTTTGTTTTCTTTTGATTTATTAATTAATTTACTATTTTAACCTTTAAAAA
1 CACATGCTTTTCTTTTTTGTTTTCTTTTGATTTATTAATTAATTTACTATTTTAACCTTTAAAAA
*
70926002 AACTAAAAGTTCATAATTAAAAACCACTAACAGTCCACCATAATCTAAATAGGTCTAATTACTAT
66 AACTAAAATTTCATAATTAAAAACCACTAACAGTCCACCATAATCTAAATAGGTCTAATTACTAT
* *
70926067 ATAAATCTCTTAATTCATGATTTTATATGTATTTAATACAAATAAACCTATAGTGCTTAACTTTT
131 ATAAATCCCTTAATTCATGATTTTATATCTATTTAATACAAATAAACCTATAGTGCTTAACTTTT
* * * *
70926132 GTAGCTTTTACGATTTAGTCTTTTTTTTACTTTATTAAGTAA-CAAAAACTCAAAATTTTTCAAT
196 GCAGCTTTTACGATTTAGTC---TTTTTACTTAATTAAGCAACCAAACA-TCAAAATTTTT-AA-
*
70926196 CAAACTTTATTACGACACATTAATAGACTCATAAATATTAAATAAATAATATAATACTAACTCAC
255 CAAA-TTT-TTACGACACA-TAA-AGACTCATAAATATTAAATAAATAATATAATACTGACTCAC
* * * * * * *
70926261 TGATCGAAATTGTGATCTCGAAACCATTATTTTTTATACCACTGAAAAACGGGTTGTTACAGATT
316 TGATCGAAATTGTGGTC-CCAAAACACTATTTTTGATACCACTG-AAAACGGGTTGTTACAAATG
* ** ** * *
70926326 GGTAACAAAATAAAATTGTCAGATAATGTTTCTATTTTTCTATTTTCATAAAATAAATGAAAAAA
379 GGTAACTAAATAAAATTGTCAGCCAATGTTTCTATCATTCTATTTTTAGAAAATAAATGAAAAAA
** * * * * *
70926391 ATTAA--ACAT--TTTTTCATCACAAGGCATTGCTTATATCTTTGACCGTCATCGCTCCATCTTC
444 AAAAATTACATAGTTTTTCATCACAAGGCATTCCTTGTGTCTTCGACTGTCATCGCTCCATCTTC
* ** * * *
70926452 TCCTTATCGTGAACTTCTTTTTGGAAAAATTACATTTATGTCCTACGTCTGTTTCTAGCTCACAA
509 TCCTCATAATGGACTCCTTTTTGGAAAAATTACATTTATGTCCTACGTCCGTTTCTAGCTCACAA
*
70926517 GAATTCAAAAAATAAAAAATAATCCTATACGGAGATGATAGTATATGGTCTATTTCCTAAGAAAC
574 GAATTCAAAAAATAAAAAATAATCCTATACGGAGATGATAGTATACGGTCTATTTCCTAAGAAAC
70926582 ACAAACTTGGAAAAAGAAAAAGAAATTATATAACAAACATATAATATTGCATTCATTCACATACA
639 ACAAACTTGGAAAAAGAAAAAGAAATTATATAACAAACATATAATATTGCATTCATTCACATACA
* * *
70926647 TTCCTTTAAACATGCAATAACTACAAGAATATCACATCTTATCAAATATTAATCAAATAAAATGA
704 TTCCCTTAAACATGCAATAACTACAAAAATATCACATCTTATCAAATATTAATCAAACAAAATGA
* * * *
70926712 AGAGAGAGGTCCAGTCTCGTTTTACACCATAAATATAGCACAACCTGA-TTCTTGATACCAATTG
769 AGAGAAAGATCCAGTCTCGTTTTACACCATAAACATAGCACAACCTGACTT-TTGATACCAATTA
** *
70926776 TTGGAAAAATA-TC-CGGTTTGAAAATAGTATTCTTGCATAGCAGATGAC
833 TTGGAAAAATATTCACAATTTGAAAATAGTATTCTTGCACAGCAGATGAC
*
70926824 CACATGCTTTTCTTTTTTGTTTTCTTTTGATTTATTAATTAATTTACTCTTTTAACCTTTAAAAA
1 CACATGCTTTTCTTTTTTGTTTTCTTTTGATTTATTAATTAATTTACTATTTTAACCTTTAAAAA
*
70926889 CAACTAAAATTTCATAATTAAAACCCACTAACAGTCCACCATAATCTAAATAGGTCTAATTACTA
66 -AACTAAAATTTCATAATTAAAAACCACTAACAGTCCACCATAATCTAAATAGGTCTAATTACTA
70926954 TATAAATCCCTTAATTCATGATTTTATATCTATTTAATA-AAATAAACCTATAGTGCTTAACTTT
130 TATAAATCCCTTAATTCATGATTTTATATCTATTTAATACAAATAAACCTATAGTGCTTAACTTT
* * *
70927018 TGCAGCTTTTATGATTTAGACCTTTTACTTAATTAAGCAACCAAACATCAAAATTTTTAAACCAA
195 TGCAGCTTTTACGATTTAGTCTTTTTACTTAATTAAGCAACCAAACATCAAAATTTTT-AA-CAA
* * *
70927083 AGTTTTTTACGACACTATAAGAGACTCATAAATATTAAATAAATAACATAGTACTGACTCATTGA
258 A--TTTTTACGACAC-ATAA-AGACTCATAAATATTAAATAAATAATATAATACTGACTCACTGA
**
70927148 TCGAAATCATGGTCCCAAAATCACTATTTTTGATACCACTGAAAACGGGTTGTTACAAATGGGTA
319 TCGAAATTGTGGTCCCAAAA-CACTATTTTTGATACCACTGAAAACGGGTTGTTACAAATGGGTA
*
70927213 ACTAAATAAAATTGTCAGCCAATGTCTCTATCATTCTATTTTTAGAAAATAAATGAAAAATAAAA
383 ACTAAATAAAATTGTCAGCCAATGTTTCTATCATTCTATTTTTAGAAAATAAATGAAAAA-AAAA
*
70927278 AATTACATAGTTTTTCATCATAAGGCATTCCTTGTGTCTTCGACTGTCATCGCTCCATCTT-TCC
447 AATTACATAGTTTTTCATCACAAGGCATTCCTTGTGTCTTCGACTGTCATCGCTCCATCTTCTCC
* * *
70927342 TCATTATGGGCTCCCTTTTGGAAAAATTACATTTATGTCCTACGTCCGTTTCTAGCTCACAAGAA
512 TCATAATGGACTCCTTTTTGGAAAAATTACATTTATGTCCTACGTCCGTTTCTAGCTCACAAGAA
* * ** * *
70927407 TTCCAAAAATAAAAAATAATTCTATGTGGAGATGATAGTATACGGTTTATTTCCTAAGAACCACA
577 TTCAAAAAATAAAAAATAATCCTATACGGAGATGATAGTATACGGTCTATTTCCTAAGAAACACA
* ** ** *
70927472 ACCTTGGCAAAAA-ATTAA-TTATTATATAACAAATATATAATATTGCATTCATTCACATACATT
642 AACTTGG-AAAAAGAAAAAGAAATTATATAACAAACATATAATATTGCATTCATTCACATACATT
* * *
70927535 CCCTTAAACATGCAAATAACTACAAAAATGTCACATCTTGTCAAATATTAATCAAACAAGATGAA
706 CCCTTAAACATGC-AATAACTACAAAAATATCACATCTTATCAAATATTAATCAAACAAAATGAA
*
70927600 GAGAAAGATTCAGTCTCGTTTTACACCATAAACATAGCACAACCTGACTTTTGATACCAATTATT
770 GAGAAAGATCCAGTCTCGTTTTACACCATAAACATAGCACAACCTGACTTTTGATACCAATTATT
*
70927665 GGAAAAATATTTTCAAATTATTCAATTTGAAAATAGTATTCTTGCACAGCCGATGAC
835 GGAAAAATA--TTC-----A--CAATTTGAAAATAGTATTCTTGCACAGCAGATGAC
* * * *
70927722 CATATGCTTTTTTTGTTTTGTTTTGTTTTTGTTTTGTTTTGATTCATTAATTAATTTACTATTTT
1 CACATGC----------TT-TTCT-TTTTTGTTTTCTTTTGATTTATTAATTAATTTACTATTTT
* *
70927787 AACCTTTAAAAATAATTAAAATTTCATAATTAAAAGCCACTAACCA-TCCACCATAATCTAAATA
54 AACCTTTAAAAA-AACTAAAATTTCATAATTAAAAACCACTAA-CAGTCCACCATAATCTAAATA
* *
70927851 GTTCTAATTACT-TATAAATCCCTTAATTCATGATTTTATATCTATTTAATACAAATAAATCTAT
117 GGTCTAATTACTATATAAATCCCTTAATTCATGATTTTATATCTATTTAATACAAATAAACCTAT
* *
70927915 AGTGTTTAACTTTTGCAACTTTTACGATTTAGTTCTTTTTACTTAATTAAGCAACCAAACATCAA
182 AGTGCTTAACTTTTGCAGCTTTTACGATTTAG-TCTTTTTACTTAATTAAGCAACCAAACATCAA
*
70927980 AA-TATT----AA---TT-----AC-T---GACTCATAAATATTAAATAAATAATATAATACTGA
246 AATTTTTAACAAATTTTTACGACACATAAAGACTCATAAATATTAAATAAATAATATAATACTGA
** * *
70928028 CTCACTGATTAAAATTGTGGT-CTAAAACTAC-AGTTTTTGATACCACTGAAAACGGGTTGTTAT
311 CTCACTGATCGAAATTGTGGTCCCAAAAC-ACTA-TTTTTGATACCACTGAAAACGGGTTGTTAC
* * *
70928091 AGATGATGGGTAA-TAAAATAAAATTGTCAGCCAA-GTTTTCTATGATTCAATTTCTAGAAAATA
374 A-A--ATGGGTAACT-AAATAAAATTGTCAGCCAATG-TTTCTATCATTCTATTTTTAGAAAATA
* *
70928154 AATG---AAAAAAAATTACATAGTTTTTCATCACAAGGCATTCCTTGTGTTTTC-AATCGTCATC
434 AATGAAAAAAAAAAATTACATAGTTTTTCATCACAAGGCATTCCTTGTGTCTTCGACT-GTCATC
* * * *
70928215 CCTCCATCTTCTCCTCGTAATGGATTCTTTTTTGGAAAAATTA
498 GCTCCATCTTCTCCTCATAATGGACTCCTTTTTGGAAAAATTA
70928258 TATATATTTC
Statistics
Matches: 1266, Mismatches: 120, Indels: 96
0.85 0.08 0.06
Matches are distributed among these distances:
883 78 0.06
884 118 0.09
885 11 0.01
886 118 0.09
887 411 0.32
888 201 0.16
889 2 0.00
890 56 0.04
892 1 0.00
894 2 0.00
898 37 0.03
899 2 0.00
904 2 0.00
908 2 0.00
909 42 0.03
910 149 0.12
911 34 0.03
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (882 bp):
CACATGCTTTTCTTTTTTGTTTTCTTTTGATTTATTAATTAATTTACTATTTTAACCTTTAAAAA
AACTAAAATTTCATAATTAAAAACCACTAACAGTCCACCATAATCTAAATAGGTCTAATTACTAT
ATAAATCCCTTAATTCATGATTTTATATCTATTTAATACAAATAAACCTATAGTGCTTAACTTTT
GCAGCTTTTACGATTTAGTCTTTTTACTTAATTAAGCAACCAAACATCAAAATTTTTAACAAATT
TTTACGACACATAAAGACTCATAAATATTAAATAAATAATATAATACTGACTCACTGATCGAAAT
TGTGGTCCCAAAACACTATTTTTGATACCACTGAAAACGGGTTGTTACAAATGGGTAACTAAATA
AAATTGTCAGCCAATGTTTCTATCATTCTATTTTTAGAAAATAAATGAAAAAAAAAAATTACATA
GTTTTTCATCACAAGGCATTCCTTGTGTCTTCGACTGTCATCGCTCCATCTTCTCCTCATAATGG
ACTCCTTTTTGGAAAAATTACATTTATGTCCTACGTCCGTTTCTAGCTCACAAGAATTCAAAAAA
TAAAAAATAATCCTATACGGAGATGATAGTATACGGTCTATTTCCTAAGAAACACAAACTTGGAA
AAAGAAAAAGAAATTATATAACAAACATATAATATTGCATTCATTCACATACATTCCCTTAAACA
TGCAATAACTACAAAAATATCACATCTTATCAAATATTAATCAAACAAAATGAAGAGAAAGATCC
AGTCTCGTTTTACACCATAAACATAGCACAACCTGACTTTTGATACCAATTATTGGAAAAATATT
CACAATTTGAAAATAGTATTCTTGCACAGCAGATGAC
Found at i:70927742 original size:5 final size:5
Alignment explanation
Indices: 70927732--70927762 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
70927722 CATATGCTTT
70927732 TTTTG TTTTG TTTTG TTTTTG TTTTG TTTTG
1 TTTTG TTTTG TTTTG -TTTTG TTTTG TTTTG
70927763 ATTCATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTTG
Found at i:70927751 original size:11 final size:11
Alignment explanation
Indices: 70927732--70927761 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
70927722 CATATGCTTT
70927732 TTTTG-TTTTG
1 TTTTGTTTTTG
70927742 TTTTGTTTTTG
1 TTTTGTTTTTG
70927753 TTTTGTTTT
1 TTTTGTTTT
70927762 GATTCATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (11 bp):
TTTTGTTTTTG
Found at i:70927752 original size:16 final size:16
Alignment explanation
Indices: 70927731--70927762 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
70927721 CCATATGCTT
70927731 TTTTTGTTTTGTTTTG
1 TTTTTGTTTTGTTTTG
70927747 TTTTTGTTTTGTTTTG
1 TTTTTGTTTTGTTTTG
70927763 ATTCATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (16 bp):
TTTTTGTTTTGTTTTG
Found at i:70933265 original size:25 final size:25
Alignment explanation
Indices: 70933235--70933326 Score: 112
Period size: 25 Copynumber: 3.7 Consensus size: 25
70933225 TCTCGAGCAG
* *
70933235 TATAACAGGAAGCTCATGTGAGCTA
1 TATAACGGGAAGCTCATCTGAGCTA
* * * *
70933260 TGTAACGGGGAGCTTATCTGGGCTA
1 TATAACGGGAAGCTCATCTGAGCTA
* *
70933285 TATAACGGGAAGCTTATCTGGGCTA
1 TATAACGGGAAGCTCATCTGAGCTA
70933310 TATAACGGGAAGCTCAT
1 TATAACGGGAAGCTCAT
70933327 AAGAGCCATA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (25 bp):
TATAACGGGAAGCTCATCTGAGCTA
Found at i:70933396 original size:25 final size:23
Alignment explanation
Indices: 70933317--70933446 Score: 102
Period size: 25 Copynumber: 5.3 Consensus size: 23
70933307 CTATATAACG
70933317 GGAAGCTCATAAGAGCCATAATCA
1 GGAAGCTC-TAAGAGCCATAATCA
**
70933341 GGAAGCTCATGTGAGCCAATAA-CA
1 GGAAGCTC-TAAGAGCC-ATAATCA
*
70933365 GGTAGCTCGTAAGAGCCATTAATCA
1 GGAAGCTC-TAAGAGCCA-TAATCA
* *
70933390 GGAAGCTCTGGATAGCCATATATC-
1 GGAAGCTCT-AAGAGCCATA-ATCA
*
70933414 GAAAAGCTCTAGAGAGCCATTAATCA
1 G-GAAGCTCTA-AGAGCCA-TAATCA
70933440 GGAAGCT
1 GGAAGCT
70933447 GACAAATAGA
Statistics
Matches: 84, Mismatches: 13, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
23 1 0.01
24 37 0.44
25 43 0.51
26 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (23 bp):
GGAAGCTCTAAGAGCCATAATCA
Found at i:70933991 original size:21 final size:21
Alignment explanation
Indices: 70933967--70934008 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70933957 TAAATTTAGC
* *
70933967 TCAATTGAATACAATTCATAT
1 TCAATTCAACACAATTCATAT
*
70933988 TCAATTCAACCCAATTCATAT
1 TCAATTCAACACAATTCATAT
70934009 CTTAAGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.36
Consensus pattern (21 bp):
TCAATTCAACACAATTCATAT
Found at i:70938219 original size:25 final size:25
Alignment explanation
Indices: 70938191--70938285 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
70938181 CTCTTTTAAT
*
70938191 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* ***
70938216 AACTCGGGCAAAGAAATTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
70938241 AATTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
70938266 AACCGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
70938286 AGCACTTCCT
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:70938554 original size:54 final size:54
Alignment explanation
Indices: 70938489--70938702 Score: 286
Period size: 54 Copynumber: 4.0 Consensus size: 54
70938479 GGGCAAAATG
* * * * * *
70938489 GTAATTTTACCCCAAAAGGATATCTCGATAATT-TAACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCT-ACCCTACAGGGGTATTTCA
* * * *
70938543 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* *
70938597 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGTTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* *
70938651 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
70938703 TGATATTTTA
Statistics
Matches: 141, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 140 0.99
55 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
Found at i:70938556 original size:27 final size:27
Alignment explanation
Indices: 70938524--70938702 Score: 286
Period size: 27 Copynumber: 6.6 Consensus size: 27
70938514 CGATAATTTA
*
70938524 ACCCTACAGGGGTATTTCGGTATTTCT
1 ACCCTACAGGGGTATTTCGGTAATTCT
*
70938551 ACCCTACAAGGGTATTTCGGTAATTCT
1 ACCCTACAGGGGTATTTCGGTAATTCT
* * *
70938578 ACCTTACAAGGGTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCGGTAATTCT
*
70938605 ACCCTACAGGGGTATTTCGATAATTCT
1 ACCCTACAGGGGTATTTCGGTAATTCT
* *
70938632 ACCCTACAGGGTTATTTCAGTAATTCT
1 ACCCTACAGGGGTATTTCGGTAATTCT
70938659 ACCCTACAGGGGTATTTCGGTAATTCT
1 ACCCTACAGGGGTATTTCGGTAATTCT
70938686 ACCCTACAGGGGTATTT
1 ACCCTACAGGGGTATTT
70938703 TGATATTTTA
Statistics
Matches: 139, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
ACCCTACAGGGGTATTTCGGTAATTCT
Found at i:70938790 original size:54 final size:54
Alignment explanation
Indices: 70938665--70938900 Score: 255
Period size: 54 Copynumber: 4.4 Consensus size: 54
70938655 TTCTACCCTA
* * ** * *
70938665 CAGGGGTATTTCGGTAATTCTAC-CCTACAGGGGTATTTTGAT-ATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAT-CAGGGGTATTTTGGTAATTTTACAAAC
* * * *
70938718 C-GAGAGTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGC
1 CAG-GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
* *
70938772 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
** **
70938826 CAGGGGTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAAC
* *
70938880 CAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
70938901 GTAAATCGAG
Statistics
Matches: 154, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
52 1 0.01
53 31 0.20
54 121 0.79
55 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
Found at i:70938830 original size:81 final size:81
Alignment explanation
Indices: 70938665--70938900 Score: 273
Period size: 81 Copynumber: 2.9 Consensus size: 81
70938655 TTCTACCCTA
* * ** * * * *
70938665 CAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGAT-ATTTTACAAATC-GAGAGTATT
1 CAGGGGTATTTTGGTAATTTTACAATCCAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATT
* *
70938728 TT-GATAATTTCACAAAT
65 TTAG-TAATTTTACAAAC
*
70938745 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAATCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
70938810 TAGTAATTTTACAAAC
66 TAGTAATTTTACAAAC
* * ** *
70938826 CAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 CAGGGGTATTTTGGTAATTTTAC-AATCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATT
70938890 TTAGTAATTTT
65 TTAGTAATTTT
70938901 GTAAATCGAG
Statistics
Matches: 135, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
80 35 0.26
81 95 0.70
82 5 0.04
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAATCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
TAGTAATTTTACAAAC
Found at i:70938905 original size:27 final size:27
Alignment explanation
Indices: 70938695--70938900 Score: 225
Period size: 27 Copynumber: 7.7 Consensus size: 27
70938685 TACCCTACAG
* * *
70938695 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * *
70938721 GAGTATTTTGATAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
70938748 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
70938775 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
70938802 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
70938829 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
70938856 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
70938883 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
70938901 GTAAATCGAG
Statistics
Matches: 155, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 11 0.07
27 144 0.93
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:70938912 original size:27 final size:27
Alignment explanation
Indices: 70938695--70939076 Score: 209
Period size: 27 Copynumber: 14.2 Consensus size: 27
70938685 TACCCTACAG
* *
70938695 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * *
70938721 GAGTATTTTGATAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
70938747 GGGGTATTTTGGTAATTTTA-CAAGCCA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* *
70938774 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * *
70938801 GGGGTATTTTAGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTATAAATCGA
*
70938828 GGGGTATTTTGGTAATTTTACT-GATCGA
1 -GGGTATTTTGGTAATTTTA-TAAATCGA
* * *
70938856 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
70938883 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** *
70938910 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
70938937 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*****
70938964 GGGTAAAACAGTAATTTTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
70938991 GGGTAAAATGGTAATTCTATAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *** * *
70939018 AGGTAAAATGGTAATTCTATAAATAGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** * *
70939045 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
70939072 GGGTA
1 GGGTA
70939077 AAACGGTAAT
Statistics
Matches: 306, Mismatches: 43, Indels: 13
0.85 0.12 0.04
Matches are distributed among these distances:
26 16 0.05
27 286 0.93
28 4 0.01
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:70938923 original size:54 final size:54
Alignment explanation
Indices: 70938865--70939090 Score: 265
Period size: 54 Copynumber: 4.2 Consensus size: 54
70938855 AGGGTATTTT
* *** * *
70938865 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAACCAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* * *
70938919 GGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAACCAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * * * *
70938973 AGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATTGAAGGTAAAAT
1 GGTAATTTTATAAACCAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* * *
70939027 GGTAATTCTATAAA-TAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAACCA-AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
70939081 GGTAATTTTA
1 GGTAATTTTA
70939091 CAAATTGAGG
Statistics
Matches: 146, Mismatches: 25, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
54 146 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.31
Consensus pattern (54 bp):
GGTAATTTTATAAACCAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:70938923 original size:81 final size:81
Alignment explanation
Indices: 70938775--70939014 Score: 250
Period size: 81 Copynumber: 3.0 Consensus size: 81
70938765 TACAAGCCAG
** * * * ***
70938775 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAA-CCAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGA-GGGTAAAATG
* *
70938839 GTAATTTTACT-GATCGA
65 GTAATTCTA-TAAATCGA
* *
70938856 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGG
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATGG
70938921 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
*** * * * ****
70938937 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATGG
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATGG
70939002 TAATTCTATAAAT
66 TAATTCTATAAAT
70939015 TGAAGGTAAA
Statistics
Matches: 133, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 130 0.98
82 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATGG
TAATTCTATAAATCGA
Found at i:70939023 original size:81 final size:81
Alignment explanation
Indices: 70938892--70939098 Score: 324
Period size: 81 Copynumber: 2.6 Consensus size: 81
70938882 AGGGTATTTT
* * *
70938892 AGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGT
1 AGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAAGGTAAAATGGTAATTCTAT
*
70938957 AAATCGAGGGTAAAAC
66 AAATAGAGGGTAAAAC
* *
70938973 AGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATTGAAGGTAAAATGGTAATTCTAT
1 AGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAAGGTAAAATGGTAATTCTAT
70939038 AAATAGAGGGTAAAAC
66 AAATAGAGGGTAAAAC
* * * *
70939054 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATTGA
1 AGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGA
70939099 GGGCATTTCA
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 114 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
AGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAAGGTAAAATGGTAATTCTAT
AAATAGAGGGTAAAAC
Done.