Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 244 of 345
Found at i:71816353 original size:21 final size:20
Alignment explanation
Indices: 71816314--71816353 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
71816304 TGGTCCGTAA
*
71816314 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCACTTTTG
*
71816334 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
71816354 TTCGAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.33, G:0.25, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTG
Found at i:71820197 original size:21 final size:22
Alignment explanation
Indices: 71820152--71820197 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
71820142 TTTTGAATGT
*
71820152 AAACACAGACGATTGAATACAA
1 AAACACAGACGATCGAATACAA
71820174 AAACACAGA-GAATCGAAT-CAA
1 AAACACAGACG-ATCGAATACAA
71820195 AAA
1 AAA
71820198 AGGAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.59, C:0.17, G:0.13, T:0.11
Consensus pattern (22 bp):
AAACACAGACGATCGAATACAA
Found at i:71821067 original size:21 final size:21
Alignment explanation
Indices: 71821030--71821069 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
71821020 ATACACTTAT
*
71821030 TTTATTTTATTCGTTTTATTA
1 TTTATTTTATTCCTTTTATTA
71821051 TTTA-TTTATATCCTTTTAT
1 TTTATTTTAT-TCCTTTTAT
71821070 ATAATTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTATTTTATTCCTTTTATTA
Found at i:71821114 original size:15 final size:15
Alignment explanation
Indices: 71821102--71821145 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
71821092 CTATTATTTG
71821102 TATTATCATTATTAA
1 TATTATCATTATTAA
*
71821117 TATTATCATTATTAT
1 TATTATCATTATTAA
71821132 TATTAAT-ATTATTA
1 TATT-ATCATTATTA
71821146 GTTTTAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 25 0.93
16 2 0.07
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTATCATTATTAA
Found at i:71821115 original size:3 final size:3
Alignment explanation
Indices: 71821093--71821145 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
71821083 TTAGGTATTC
* * * *
71821093 TAT TAT T-T GTAT TAT CAT TAT TAA TAT TAT CAT TAT TAT TAT TAA
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
71821138 TAT TAT TA
1 TAT TAT TA
71821146 GTTTTAAACC
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 1 0.03
3 38 0.95
4 1 0.03
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:71824548 original size:100 final size:100
Alignment explanation
Indices: 71824428--71824627 Score: 400
Period size: 100 Copynumber: 2.0 Consensus size: 100
71824418 AGAGTTAGAA
71824428 AGATCCCTACATCAGTACCATAGTCGAACTCTGCAATCGAGTTGAAGACTAGTCGGAGCAAAATT
1 AGATCCCTACATCAGTACCATAGTCGAACTCTGCAATCGAGTTGAAGACTAGTCGGAGCAAAATT
71824493 GAAGAGCTAAAAGGAAAGATAGAAGAACTCAAAAT
66 GAAGAGCTAAAAGGAAAGATAGAAGAACTCAAAAT
71824528 AGATCCCTACATCAGTACCATAGTCGAACTCTGCAATCGAGTTGAAGACTAGTCGGAGCAAAATT
1 AGATCCCTACATCAGTACCATAGTCGAACTCTGCAATCGAGTTGAAGACTAGTCGGAGCAAAATT
71824593 GAAGAGCTAAAAGGAAAGATAGAAGAACTCAAAAT
66 GAAGAGCTAAAAGGAAAGATAGAAGAACTCAAAAT
71824628 CACGCTACAA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (100 bp):
AGATCCCTACATCAGTACCATAGTCGAACTCTGCAATCGAGTTGAAGACTAGTCGGAGCAAAATT
GAAGAGCTAAAAGGAAAGATAGAAGAACTCAAAAT
Found at i:71832405 original size:39 final size:40
Alignment explanation
Indices: 71832362--71832440 Score: 142
Period size: 39 Copynumber: 2.0 Consensus size: 40
71832352 ATTGAAAAGA
*
71832362 ATGTTTATAATTGAGATATTTAAAGTAT-GATGTCTTATT
1 ATGTTTATAATTGAGATATTTAAAGTATAAATGTCTTATT
71832401 ATGTTTATAATTGAGATATTTAAAGTATAAATGTCTTATT
1 ATGTTTATAATTGAGATATTTAAAGTATAAATGTCTTATT
71832441 GTTATATTGT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 28 0.74
40 10 0.26
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (40 bp):
ATGTTTATAATTGAGATATTTAAAGTATAAATGTCTTATT
Found at i:71832470 original size:38 final size:38
Alignment explanation
Indices: 71832423--71832501 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
71832413 GAGATATTTA
71832423 AAGTATAAATGTCTTATTGTTATATTGTATGTGTTACC
1 AAGTATAAATGTCTTATTGTTATATTGTATGTGTTACC
71832461 AAGTATAAATGTCTTATTGTTATATTGTATGTGTTACC
1 AAGTATAAATGTCTTATTGTTATATTGTATGTGTTACC
71832499 AAG
1 AAG
71832502 CCCCGTTTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (38 bp):
AAGTATAAATGTCTTATTGTTATATTGTATGTGTTACC
Found at i:71835332 original size:34 final size:34
Alignment explanation
Indices: 71835286--71835360 Score: 118
Period size: 34 Copynumber: 2.2 Consensus size: 34
71835276 TTTGCTTGCA
*
71835286 TACTG-TACTGAAATGGGCTAAGGCCCAGACTG-
1 TACTGTTATTGAAATGGGCTAAGGCCCAGACTGC
71835318 TCACTGTTATTGAAATGGGCTAAGGCCCAGACTGC
1 T-ACTGTTATTGAAATGGGCTAAGGCCCAGACTGC
71835353 TACTGTTA
1 TACTGTTA
71835361 CTAGAAAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
32 1 0.03
33 4 0.10
34 33 0.85
35 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (34 bp):
TACTGTTATTGAAATGGGCTAAGGCCCAGACTGC
Found at i:71838472 original size:22 final size:22
Alignment explanation
Indices: 71838447--71838491 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
71838437 CTCTTAGTAC
*
71838447 TTTAAG-TATTATCTTTATGGGT
1 TTTAAGCTATT-TCTTAATGGGT
*
71838469 TTTAGGCTATTTCTTAATGGGT
1 TTTAAGCTATTTCTTAATGGGT
71838491 T
1 T
71838492 CTATCTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53
Consensus pattern (22 bp):
TTTAAGCTATTTCTTAATGGGT
Found at i:71839503 original size:27 final size:27
Alignment explanation
Indices: 71839465--71839522 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
71839455 GGTTGTTAAG
71839465 ACCCCCAATTTGTAAAATGACCGAAAT
1 ACCCCCAATTTGTAAAATGACCGAAAT
* * *
71839492 ACCCCTAATTTGTAAAATTATCGAAAT
1 ACCCCCAATTTGTAAAATGACCGAAAT
71839519 ACCC
1 ACCC
71839523 TTGTAGGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (27 bp):
ACCCCCAATTTGTAAAATGACCGAAAT
Found at i:71840202 original size:31 final size:31
Alignment explanation
Indices: 71840143--71840202 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
71840133 TATTGGGCTC
* *
71840143 AGGCCCACTTGTTCTGTTATTGGTTTGTGCT
1 AGGCCCAATTGTTCTGTTATTGGGTTGTGCT
71840174 AGGCCCAATTGATTCTGTTA-TGGGTTGTG
1 AGGCCCAATTG-TTCTGTTATTGGGTTGTG
71840203 GCCCAAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.13, C:0.17, G:0.28, T:0.42
Consensus pattern (31 bp):
AGGCCCAATTGTTCTGTTATTGGGTTGTGCT
Found at i:71845248 original size:40 final size:40
Alignment explanation
Indices: 71845153--71845296 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
71845143 GAATGGTATT
* * * *
71845153 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAAAC
* *
71845194 CGGG-TCAATTCCCGAAGGCATTTGTGTGAGTTACCAAAAC
1 CGGGCT-AAGTCCCGAAGGCATTTGTGTGAGTTACTAAAAC
* * * *
71845234 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAAC
*
71845274 CGGGCTATGTCCCGAAGGC-TTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
71845297 AGCGAGTCGC
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.05
40 61 0.69
41 23 0.26
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAAC
Found at i:71847132 original size:27 final size:27
Alignment explanation
Indices: 71847074--71847232 Score: 115
Period size: 27 Copynumber: 5.9 Consensus size: 27
71847064 TACACTAAAA
* * *
71847074 GGGTATTTCGGTAATTTTACAAACCGA
1 GGGTATTTCAGTAATTTTACAAATCGG
* *
71847101 AGGTATTTCAGTAATTTTACAAGTCGG
1 GGGTATTTCAGTAATTTTACAAATCGG
* ** * * *
71847128 GGGTATTT-TGATAATTGCAAAAATTGA
1 GGGTATTTCAG-TAATTTTACAAATCGG
* * **
71847155 GGGTATTTCGGTAATTTCACAAATTAG
1 GGGTATTTCAGTAATTTTACAAATCGG
* **
71847182 GGGTATTTC-GATATTTTTACAACCCGG
1 GGGTATTTCAG-TAATTTTACAAATCGG
*
71847209 GGGTATTTTAGTAATTTTACAAAT
1 GGGTATTTCAGTAATTTTACAAAT
71847233 TAGGGGTCTT
Statistics
Matches: 100, Mismatches: 28, Indels: 8
0.74 0.21 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.96
28 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGG
Found at i:71847132 original size:54 final size:54
Alignment explanation
Indices: 71847074--71847239 Score: 170
Period size: 54 Copynumber: 3.1 Consensus size: 54
71847064 TACACTAAAA
* * * *
71847074 GGGTATTTCGGTAATTTTACAAACCGAAGGTATTTCAGTAATTTTACAAGTCGG
1 GGGTATTTCGATAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAATCAG
* ** * ** * * *
71847128 GGGTATTTTGATAATTGCAAAAATTGAGGGTATTTCGGTAATTTCACAAATTAG
1 GGGTATTTCGATAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAATCAG
* * * * *
71847182 GGGTATTTCGATATTTTTACAACCCGGGGGTATTTTAGTAATTTTACAAATTAG
1 GGGTATTTCGATAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAATCAG
71847236 GGGT
1 GGGT
71847240 CTTAACGACC
Statistics
Matches: 87, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAATCAG
Found at i:71856300 original size:33 final size:33
Alignment explanation
Indices: 71856258--71856329 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
71856248 TAACTAACAG
71856258 TTCACATTTTCAATCATAATCTTATGTATGAAC
1 TTCACATTTTCAATCATAATCTTATGTATGAAC
71856291 TTCACATTTTCAATCATAATCTTATGTATGAAC
1 TTCACATTTTCAATCATAATCTTATGTATGAAC
71856324 TTCACA
1 TTCACA
71856330 ACTTCTTAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.42
Consensus pattern (33 bp):
TTCACATTTTCAATCATAATCTTATGTATGAAC
Found at i:71861995 original size:18 final size:19
Alignment explanation
Indices: 71861972--71862012 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
71861962 GACCCACTTG
71861972 GGCCAAGTAATGGGCCTT-
1 GGCCAAGTAATGGGCCTTA
71861990 GGCCAAGTAATGGGCCTTA
1 GGCCAAGTAATGGGCCTTA
71862009 GGCC
1 GGCC
71862013 CATTTGCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.22, C:0.24, G:0.34, T:0.20
Consensus pattern (19 bp):
GGCCAAGTAATGGGCCTTA
Found at i:71862141 original size:28 final size:28
Alignment explanation
Indices: 71862100--71862155 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
71862090 CTCGATTTGT
*
71862100 AAAATTACCATAATGCCCCTATATGGTA
1 AAAATTACCATAATACCCCTATATGGTA
* *
71862128 AAAATTACCGTAATACCCCTGTATGGTA
1 AAAATTACCATAATACCCCTATATGGTA
71862156 GAATGACGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (28 bp):
AAAATTACCATAATACCCCTATATGGTA
Found at i:71865384 original size:28 final size:28
Alignment explanation
Indices: 71865343--71865398 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
71865333 CCTGGTTTGT
*
71865343 AAAATTACCATAATGCCCCTATATGGTA
1 AAAATTACCATAATACCCCTATATGGTA
** *
71865371 AAAATTACTGTAATACCCCTGTATGGTA
1 AAAATTACCATAATACCCCTATATGGTA
71865399 GAATGACGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (28 bp):
AAAATTACCATAATACCCCTATATGGTA
Found at i:71865678 original size:22 final size:22
Alignment explanation
Indices: 71865648--71865702 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
71865638 TACGACCTTT
* * *
71865648 AGCCATCCTGTCTAGGGCGTTG
1 AGCCGTCCTGTCTACGGCGTTA
*
71865670 AGCCGTCCTGTCTACGGTGTTA
1 AGCCGTCCTGTCTACGGCGTTA
*
71865692 AGTCGTCCTGT
1 AGCCGTCCTGT
71865703 TGACTTAGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.13, C:0.27, G:0.29, T:0.31
Consensus pattern (22 bp):
AGCCGTCCTGTCTACGGCGTTA
Found at i:71867464 original size:2 final size:2
Alignment explanation
Indices: 71867457--71867490 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
71867447 CATCTTCTTT
71867457 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
71867491 ATTTCAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:71870864 original size:20 final size:20
Alignment explanation
Indices: 71870831--71870884 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
71870821 AATTGGGGTC
*
71870831 ACACGCCTGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
*
71870851 ACATGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
71870871 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
71870885 GCAGGCCGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.11, C:0.24, G:0.39, T:0.26
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:71879485 original size:288 final size:290
Alignment explanation
Indices: 71878964--71879541 Score: 1061
Period size: 288 Copynumber: 2.0 Consensus size: 290
71878954 GCCCGAAGTC
71878964 GTTCAGAAATAGACCCCCTATTCATGGGCCCGATGTTAGCTCCGGCCACCATTTCCAAAACCCTC
1 GTTCAGAAATAGACCCCCTATTCATGGGCCCGATGTTAGCTCCGGCCACCATTTCCAAAACCCTC
*
71879029 AACATGGCCTGAGACAAAGCATCATCCCCTGCGGCCCGGTCATACGGCCCATTTTCATTAACCGG
66 AACATGGCCTGAGACAAAGCATCATCCCCTGCGGCCCGGTCAAACGGCCCATTTTCATTAACCGG
* *
71879094 CGGTGGACGTGCCTCGCCAGCTGGTATGTGTTTAGATGACGCAAATCCAGCTTGGGTGCTACCTC
131 CGATGGACGTGCCTCGCCAGCTGGTATGTGTTCAGATGACGCAAATCCAGCTTGGGTGCTACCTC
71879159 AGCCTCGACCACGGCCTCTTCCCCGAGTAACCCTTGTACTCATAACGATTTATCTATTTACGAAT
196 AGCCTCGACCACGGCCTCTTCCCCGAGTAACCCTTGTACTCATAACGATTTATCTATTTACGAAT
71879224 TTTATGACATTAGTTTACTGGTTTCACTGT
261 TTTATGACATTAGTTTACTGGTTTCACTGT
* *
71879254 GTTCAGAAATGGACCCCCTATTCATGGGCCCGATGTTAGCTCCGGCCACCCTTTCCAAAACCCTC
1 GTTCAGAAATAGACCCCCTATTCATGGGCCCGATGTTAGCTCCGGCCACCATTTCCAAAACCCTC
*
71879319 AACATGGCCTGAGACAAAGCGTCATCCCCTGCGG-CCGGTCAAACGGCCCATTTTCATTAACCGG
66 AACATGGCCTGAGACAAAGCATCATCCCCTGCGGCCCGGTCAAACGGCCCATTTTCATTAACCGG
*
71879383 -GATGGACGTGCCTCGCCAGCTGGTATGTGTTCAGATGACGCAGATCCAGCTTGGGTGCTACCTC
131 CGATGGACGTGCCTCGCCAGCTGGTATGTGTTCAGATGACGCAAATCCAGCTTGGGTGCTACCTC
* *
71879447 GGCCTCGACCACGGCCTCTTCCCCGAGTAACCCTTGTACTCATAACGATTTATCTGTTTACGAAT
196 AGCCTCGACCACGGCCTCTTCCCCGAGTAACCCTTGTACTCATAACGATTTATCTATTTACGAAT
71879512 TTTATGACATTAGTTTACTGGTTTCACTGT
261 TTTATGACATTAGTTTACTGGTTTCACTGT
71879542 TTATTACAGA
Statistics
Matches: 279, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
288 154 0.55
289 29 0.10
290 96 0.34
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (290 bp):
GTTCAGAAATAGACCCCCTATTCATGGGCCCGATGTTAGCTCCGGCCACCATTTCCAAAACCCTC
AACATGGCCTGAGACAAAGCATCATCCCCTGCGGCCCGGTCAAACGGCCCATTTTCATTAACCGG
CGATGGACGTGCCTCGCCAGCTGGTATGTGTTCAGATGACGCAAATCCAGCTTGGGTGCTACCTC
AGCCTCGACCACGGCCTCTTCCCCGAGTAACCCTTGTACTCATAACGATTTATCTATTTACGAAT
TTTATGACATTAGTTTACTGGTTTCACTGT
Found at i:71889708 original size:98 final size:98
Alignment explanation
Indices: 71889526--71889819 Score: 511
Period size: 98 Copynumber: 3.0 Consensus size: 98
71889516 CATGTATGAG
71889526 ATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGA
1 ATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G--TGTATATATGTGA
71889591 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
62 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
71889628 ATGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 ATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
71889693 GCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTGT
71889726 A--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 ATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA
71889789 AGGCCTAATGGCCGATGTGATGAATGTGAAA
64 AGGCCTAATGGCCGATGTGATGAATGTGAAA
71889820 TATATGTGTG
Statistics
Matches: 188, Mismatches: 2, Indels: 8
0.95 0.01 0.04
Matches are distributed among these distances:
96 46 0.24
98 95 0.51
100 1 0.01
102 46 0.24
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (98 bp):
ATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:71889750 original size:49 final size:49
Alignment explanation
Indices: 71889529--71889819 Score: 523
Period size: 51 Copynumber: 5.9 Consensus size: 49
71889519 GTATGAGATG
71889529 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
71889578 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
71889629 TGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
71889678 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
71889727 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
71889776 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
71889820 TATATGTGTG
Statistics
Matches: 236, Mismatches: 2, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
47 46 0.19
49 93 0.39
51 97 0.41
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:71889874 original size:96 final size:97
Alignment explanation
Indices: 71889526--71889875 Score: 381
Period size: 98 Copynumber: 3.6 Consensus size: 97
71889516 CATGTATGAG
* * * *
71889526 ATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGA
1 ATGTATATATGT-ATATGGCCTAATAGCCGAAGGGATGAATGTGAAA--GTA--TATATATGTGA
*
71889591 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
61 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTAT
* * * *
71889628 ATGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 ATGTATATATGT-ATATGGCCTAATAGCCGAAGGGATGAATGTGAAAGTATATATATGTGATAAG
*
71889693 GCCTAATGGCCGATGTGATGAATGTGAAAGTGT
65 GCCTAATGGCCGATGTGATGAATGTGAAAGTAT
* * * *
71889726 A--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 ATGTATATATGT-ATATGGCCTAATAGCCGAAGGGATGAATGTGAAA--GTATATATATGTGATA
71889789 AGGCCTAATGGCCGATGTGATGAATGTGAAA-TAT
63 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTAT
* * * * *
71889823 ATGTGTGATGTGTATATGTG-GTAA-AGCCGAAGGGCT-AATGTGAAA-CATATATA
1 ATGTAT-ATATGTATATG-GCCTAATAGCCGAAGGGATGAATGTGAAAGTATATATA
71889876 AGATATGTGT
Statistics
Matches: 228, Mismatches: 14, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
94 7 0.03
96 43 0.19
97 12 0.05
98 103 0.45
99 9 0.04
100 8 0.04
102 46 0.20
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (97 bp):
ATGTATATATGTATATGGCCTAATAGCCGAAGGGATGAATGTGAAAGTATATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTAT
Found at i:71889889 original size:48 final size:48
Alignment explanation
Indices: 71889833--71889961 Score: 197
Period size: 48 Copynumber: 2.7 Consensus size: 48
71889823 ATGTGTGATG
*
71889833 TGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATAAGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
* * * **
71889881 TGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
71889929 TGTATATGTGGTAAAGCC-AATGGCTAATGTGAA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71889962 TGTTGTAATA
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 15 0.20
48 59 0.80
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
Found at i:71890055 original size:37 final size:37
Alignment explanation
Indices: 71890001--71890128 Score: 211
Period size: 37 Copynumber: 3.4 Consensus size: 37
71889991 AACTTGGAAA
* *
71890001 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACATGTGGAGAT
71890039 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
71890076 TATGTTCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
71890113 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
71890129 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
Found at i:71895513 original size:13 final size:14
Alignment explanation
Indices: 71895483--71895520 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
71895473 GGATTCTGAT
71895483 TATCT-AATTTGTA
1 TATCTGAATTTGTA
*
71895496 TATCTGACTTTGTA
1 TATCTGAATTTGTA
71895510 -ATCTGAATTTG
1 TATCTGAATTTG
71895521 AAATGGGCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (14 bp):
TATCTGAATTTGTA
Found at i:71898065 original size:40 final size:40
Alignment explanation
Indices: 71898010--71898116 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 40
71898000 GAAATTATAA
* *
71898010 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC-ATC
1 CGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATACTATC
*
71898050 CGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTATC
1 CGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATACTATC
*
71898090 CGGGCTAAGACCCGAAGGCATTTGTGC
1 CGGGCTAAGACCCGAAGGCAATTGTGC
71898117 AAATCGTGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 51 0.86
41 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.21
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATACTATC
Found at i:71898130 original size:40 final size:39
Alignment explanation
Indices: 71897966--71898148 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
71897956 AAATTGAATG
* * *
71897966 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
71898006 ATA-ACGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
71898045 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
71898085 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
71898124 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
71898149 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
36 4 0.04
37 2 0.02
38 2 0.02
39 20 0.18
40 83 0.75
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:71898131 original size:80 final size:80
Alignment explanation
Indices: 71898010--71898157 Score: 181
Period size: 80 Copynumber: 1.9 Consensus size: 80
71898000 GAAATTATAA
* * * *
71898010 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGT
1 CGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCGT
71898075 GCGAGTCATTCTATC
66 GCGAGTCATTCTATC
* * * * * * *
71898090 CGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTGG
1 CGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTCG
71898154 TGCG
65 TGCG
71898158 GGTTACCATA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 55 0.98
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (80 bp):
CGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCGT
GCGAGTCATTCTATC
Found at i:71901368 original size:29 final size:28
Alignment explanation
Indices: 71901334--71901436 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
71901324 TACTCAATCA
*
71901334 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
71901363 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
71901392 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
71901421 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
71901437 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:71909382 original size:29 final size:28
Alignment explanation
Indices: 71909348--71909450 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
71909338 TACTCAATCA
*
71909348 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
71909377 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
71909406 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
71909435 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
71909451 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:71911399 original size:44 final size:44
Alignment explanation
Indices: 71911315--71911402 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
71911305 TCAATTTTTT
* *
71911315 GTTTACCACTCAAACTCTGATTAGGATAAGTTATTTTAATATTA
1 GTTTACCACTCAAACTCTGACTAGGATAAGTTATTATAATATTA
* * * * * *
71911359 GTTTCCCACTTAAACTCTTACTAGTATAGGTTGTTATAATATTA
1 GTTTACCACTCAAACTCTGACTAGGATAAGTTATTATAATATTA
71911403 TTTGACCTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (44 bp):
GTTTACCACTCAAACTCTGACTAGGATAAGTTATTATAATATTA
Found at i:71913589 original size:42 final size:42
Alignment explanation
Indices: 71913530--71913619 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
71913520 ACAGCTTCTA
* * * *
71913530 TGAGCAGCACCATGTAGCTTATATTCTGACCAATAACTTGTG
1 TGAGCAGCACCATGTAGCTTACATTCCGAACAACAACTTGTG
* *
71913572 TGAGCAGCATCATGTAGCTTACATTCCGAACAACAGCTTGTG
1 TGAGCAGCACCATGTAGCTTACATTCCGAACAACAACTTGTG
71913614 TGAGCA
1 TGAGCA
71913620 AACTCATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (42 bp):
TGAGCAGCACCATGTAGCTTACATTCCGAACAACAACTTGTG
Found at i:71916670 original size:27 final size:27
Alignment explanation
Indices: 71916629--71916682 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
71916619 TGTCATGTGA
* *
71916629 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
71916656 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
71916683 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:71917018 original size:49 final size:49
Alignment explanation
Indices: 71916929--71917023 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
71916919 TTTATTGTGA
* * *
71916929 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
*
71916978 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
71917024 CCCTTGTCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:71921351 original size:28 final size:28
Alignment explanation
Indices: 71921319--71921383 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
71921309 ATTTACTAGA
*
71921319 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
71921347 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
71921375 ATACCCCTA
1 ATACCCCTA
71921384 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:71921530 original size:28 final size:29
Alignment explanation
Indices: 71921489--71921551 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
71921479 AGGAAGCGTC
* *
71921489 CTGGTGGCTATGCCACAAATTATCTG-CT
1 CTGGTGGCTATGCCACAAAATATCTGTAT
71921517 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
71921546 CTGGTG
1 CTGGTG
71921552 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.03
28 23 0.74
29 7 0.23
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:71921562 original size:29 final size:28
Alignment explanation
Indices: 71921499--71921562 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
71921489 CTGGTGGCTA
* * *
71921499 TGCCACAAATTATCTGCTCTGGTGGCAC
1 TGCCACAAAATATCTGATCTGGTGACAC
*
71921527 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTG-ATCTGGTGACAC
*
71921556 TGTCACA
1 TGCCACA
71921563 TTTTCTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (28 bp):
TGCCACAAAATATCTGATCTGGTGACAC
Found at i:71924834 original size:33 final size:32
Alignment explanation
Indices: 71924796--71924870 Score: 82
Period size: 32 Copynumber: 2.3 Consensus size: 32
71924786 ACACAATCCA
*
71924796 AAACCCAAATC-AGACCCAACCTAA-TACAACCCC
1 AAACCCAAATCTAAACCCAACC-AACT--AACCCC
* *
71924829 AAACCCAAACCTAAACCCAACCAACTAAGCCC
1 AAACCCAAATCTAAACCCAACCAACTAACCCC
71924861 AAACCCAAAT
1 AAACCCAAAT
71924871 AAGAAAACCT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 14 0.39
33 12 0.33
34 10 0.28
ACGTcount: A:0.48, C:0.41, G:0.03, T:0.08
Consensus pattern (32 bp):
AAACCCAAATCTAAACCCAACCAACTAACCCC
Found at i:71925169 original size:22 final size:22
Alignment explanation
Indices: 71925123--71925168 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
71925113 TTTTGAATGT
*
71925123 AAACACAGACAATTGAATACAA
1 AAACACAGACAATCGAATACAA
*
71925145 AAACACAGAGAATCGAAT-CAA
1 AAACACAGACAATCGAATACAA
71925166 AAA
1 AAA
71925169 AGGAAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.61, C:0.17, G:0.11, T:0.11
Consensus pattern (22 bp):
AAACACAGACAATCGAATACAA
Found at i:71925248 original size:7 final size:7
Alignment explanation
Indices: 71925238--71925268 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
71925228 AAGGTGTTCA
71925238 TTTTATT
1 TTTTATT
71925245 TTTTATT
1 TTTTATT
71925252 TTTTATT
1 TTTTATT
71925259 TTTTATT
1 TTTTATT
71925266 TTT
1 TTT
71925269 CTCTTTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTATT
Found at i:71926041 original size:21 final size:21
Alignment explanation
Indices: 71926004--71926043 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
71925994 ATACACTTAT
*
71926004 TTTATTTTATTCGTTTTATTA
1 TTTATTTTATTCCTTTTATTA
71926025 TTTA-TTTATATCCTTTTAT
1 TTTATTTTAT-TCCTTTTAT
71926044 ATAATTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTATTTTATTCCTTTTATTA
Found at i:71926088 original size:15 final size:15
Alignment explanation
Indices: 71926076--71926119 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
71926066 CTATTATTTG
71926076 TATTATCATTATTAA
1 TATTATCATTATTAA
* *
71926091 TATTATCATCATTAT
1 TATTATCATTATTAA
71926106 TATTAAT-ATTATTA
1 TATT-ATCATTATTA
71926120 TTTTTAAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 23 0.92
16 2 0.08
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTATCATTATTAA
Found at i:71935775 original size:40 final size:40
Alignment explanation
Indices: 71935730--71935809 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
71935720 ATTGAAAAGA
* *
71935730 ATGTTTATAATTGAGATATTTAAAGTATAAATGTCTTATT
1 ATGTTTATAATTGAGATATTTAAAGTATAAACGCCTTATT
71935770 ATGTTTATAATTGAGATATTTAAAGTATAAACGCCTTATT
1 ATGTTTATAATTGAGATATTTAAAGTATAAACGCCTTATT
71935810 GTTATATTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (40 bp):
ATGTTTATAATTGAGATATTTAAAGTATAAACGCCTTATT
Found at i:71935798 original size:20 final size:20
Alignment explanation
Indices: 71935735--71935799 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
71935725 AAAGAATGTT
71935735 TATAATTGAGATATTTAAAG
1 TATAATTGAGATATTTAAAG
* *** *
71935755 TATAAATGTCTTA-TT-ATG
1 TATAATTGAGATATTTAAAG
71935773 TTTATAATTGAGATATTTAAAG
1 --TATAATTGAGATATTTAAAG
71935795 TATAA
1 TATAA
71935800 ACGCCTTATT
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
18 2 0.06
19 2 0.06
20 23 0.74
21 2 0.06
22 2 0.06
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.45
Consensus pattern (20 bp):
TATAATTGAGATATTTAAAG
Found at i:71935846 original size:38 final size:38
Alignment explanation
Indices: 71935792--71935870 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
71935782 GAGATATTTA
71935792 AAGTATAAACGCCTTATTGTTATATTGTATGTGTTACC
1 AAGTATAAACGCCTTATTGTTATATTGTATGTGTTACC
* *
71935830 AAGTATAAATGTCTTATTGTTATATTGTATGTGTTACC
1 AAGTATAAACGCCTTATTGTTATATTGTATGTGTTACC
71935868 AAG
1 AAG
71935871 CCGTGTTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.43
Consensus pattern (38 bp):
AAGTATAAACGCCTTATTGTTATATTGTATGTGTTACC
Found at i:71936002 original size:23 final size:23
Alignment explanation
Indices: 71935976--71936088 Score: 97
Period size: 23 Copynumber: 4.8 Consensus size: 23
71935966 AGCTCGTAAG
*
71935976 AGCTTACTGTTTCAGCTCATTAA
1 AGCTTACTGTTTCAGCTCAATAA
* * *
71935999 AGCTTACCGATTCAACTCAA-AA
1 AGCTTACTGTTTCAGCTCAATAA
*
71936021 GAGCTTACTG-TTCAGCTCAATAG
1 -AGCTTACTGTTTCAGCTCAATAA
* *
71936044 AGCTTACCAT-TTTCAGTTCAATAG
1 AGCTTA-C-TGTTTCAGCTCAATAA
71936068 AGCTTACTGTTTATCAGCTCA
1 AGCTTACTG-TT-TCAGCTCA
71936089 GTAGGAGCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
22 18 0.25
23 27 0.37
24 21 0.29
25 7 0.10
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (23 bp):
AGCTTACTGTTTCAGCTCAATAA
Found at i:71936064 original size:24 final size:24
Alignment explanation
Indices: 71935985--71936102 Score: 100
Period size: 24 Copynumber: 5.0 Consensus size: 24
71935975 GAGCTTACTG
* *
71935985 TTTCAGCTCATTAAAGCTTACCGA-
1 TTTCAGCTCAATAGAGCTTACC-AT
* *
71936009 -TTCAACTCAAAAGAGCTTA-C-T
1 TTTCAGCTCAATAGAGCTTACCAT
*
71936030 GTTCAGCTCAATAGAGCTTACCAT
1 TTTCAGCTCAATAGAGCTTACCAT
* **
71936054 TTTCAGTTCAATAGAGCTTACTGT
1 TTTCAGCTCAATAGAGCTTACCAT
*
71936078 TTATCAGCTCAGTAGGAGCTTACCA
1 TT-TCAGCTCAATA-GAGCTTACCA
71936103 ACCATGACTC
Statistics
Matches: 74, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
22 18 0.24
23 16 0.22
24 23 0.31
25 9 0.12
26 8 0.11
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (24 bp):
TTTCAGCTCAATAGAGCTTACCAT
Found at i:71936070 original size:46 final size:45
Alignment explanation
Indices: 71935973--71936102 Score: 145
Period size: 46 Copynumber: 2.8 Consensus size: 45
71935963 CATAGCTCGT
* *
71935973 AAGAGCTTACTGTTTCAGCTCATTAAAGCTTACCGATTCAACTCAA
1 AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACC-ATTCAACTCAA
**
71936019 AAGAGCTTACTG-TTCAGCTCAATAGAGCTTACCATTTTCAGTTCAA
1 AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCA--TTCAACTCAA
* *
71936065 TAGAGCTTACTGTTTATCAGCTCAGTAGGAGCTTACCA
1 AAGAGCTTACTG-TT-TCAGCTCAATA-GAGCTTACCA
71936103 ACCATGACTC
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
44 1 0.01
45 19 0.26
46 31 0.43
48 1 0.01
49 10 0.14
50 10 0.14
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (45 bp):
AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCATTCAACTCAA
Found at i:71942309 original size:2 final size:2
Alignment explanation
Indices: 71942302--71942329 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
71942292 GATGTAATAG
71942302 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71942330 GTGTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71942372 original size:2 final size:2
Alignment explanation
Indices: 71942329--71942362 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
71942319 TATATATATA
71942329 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
71942363 GTTTTGTGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:71943532 original size:45 final size:44
Alignment explanation
Indices: 71943458--71943990 Score: 247
Period size: 45 Copynumber: 11.8 Consensus size: 44
71943448 AAAGCCATAG
* * *
71943458 ATCTTATCTCCTTGAAGTTACAATGGAGTAGATCGAAGATAGCAA
1 ATCTTATCTCC-TGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* * * *
71943503 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTA-TAA
1 ATCTTATCTC-CTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* *
71943547 A-CTTATCTCCTGAAGTTGCAGTGGAGCAGGTTGAAGATAGCAA
1 ATCTTATCTCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* * * ** **
71943590 ATCTTATTTCCTTGAGGCTATAGTGGAACAGATT-AAGGCTATCAAGTTACAA
1 ATCTTATCTCC-TGAAGTTGCAGTGGAGTAGATTGAA-G--AT--AG---CAA
* * * * *
71943642 AT-TGTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGTTA-TAA
1 ATCT-TATCT-CCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* * * * **
71943686 AACTTATCTCCCAGAAGTTGCAGTGGAGCAGGTTGAAG-TTTCAA
1 ATCTTATCT-CCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* * * * * * *
71943730 GTTTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATGGCGA
1 ATCTTATCT-CCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* * * ** *
71943775 ATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATT-ACAGCCA-CTA
1 ATCTTATCT-CCTGAAGTTGCAGTGGAGTAGATTGA-AGATAGCAA
* * * ** * *
71943819 ACCTTATCTCCCTGAAGTTACAGTAGAACAGGTTGAAGTTA-CAA
1 ATCTTATCT-CCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* * * * * *
71943863 GTCTTATCTCCCTGAAGCTGCAGTGGAGTAGACTAAAGATGGCTA
1 ATCTTATCT-CCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* * * * * * *
71943908 ACCTTATCTACCTAAAGTTACAGGGGAGCAGGTAGAAGATAGCAA
1 ATCTTATCT-CCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
* * *
71943953 ATCTTATCTTCCTGAAGTAGCTGTGGAGCAGATTGAAG
1 ATCTTATC-TCCTGAAGTTGCAGTGGAGTAGATTGAAG
71943991 TGACTAATCC
Statistics
Matches: 364, Mismatches: 102, Indels: 44
0.71 0.20 0.09
Matches are distributed among these distances:
42 25 0.07
43 12 0.03
44 143 0.39
45 146 0.40
46 2 0.01
47 2 0.01
48 1 0.00
49 2 0.01
50 1 0.00
51 1 0.00
52 25 0.07
53 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCAA
Found at i:71943806 original size:133 final size:134
Alignment explanation
Indices: 71943646--71943991 Score: 394
Period size: 133 Copynumber: 2.6 Consensus size: 134
71943636 TTACAAATTG
* * *
71943646 TATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGTTA-TAAAACTTATCTCCCAGAAGTTGCAGT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACTAAAACTTATCTCCCTGAAGTTGCAGT
* * * *
71943710 GGAGCAGGTTGAAGTTTCAAGTTTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATGGCGA
66 GGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGCTGCAATGGAGCAGACTAAAGATGGCGA
*
71943775 ATCT
131 ACCT
* ** * *
71943779 TGTCTCCCTAAAGTTGCAGTGGAGCAGATT-ACAGCCACT-AACCTTATCTCCCTGAAGTTACAG
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTGA-AGATACTAAAACTTATCTCCCTGAAGTTGCAG
* * * * *
71943842 TAGAACAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGCTGCAGTGGAGTAGACTAAAGATGGCT
65 TGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGCTGCAATGGAGCAGACTAAAGATGGCG
71943907 AACCT
130 AACCT
* * * * * * * * *
71943912 TATCTACCTAAAGTTACAGGGGAGCAGGTAGAAGATAGC-AAATCTTATCTTCCTGAAGTAGCTG
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATA-CTAAAACTTATCTCCCTGAAGTTGCAG
*
71943976 TGGAGCAGATTGAAGT
65 TGGAGCAGGTTGAAGT
71943992 GACTAATCCA
Statistics
Matches: 175, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
132 1 0.01
133 139 0.79
134 35 0.20
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (134 bp):
TATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACTAAAACTTATCTCCCTGAAGTTGCAGT
GGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGCTGCAATGGAGCAGACTAAAGATGGCGA
ACCT
Found at i:71943856 original size:89 final size:89
Alignment explanation
Indices: 71943646--71943986 Score: 258
Period size: 89 Copynumber: 3.8 Consensus size: 89
71943636 TTACAAATTG
* * * * * ** * *
71943646 TATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGTTATAAAACTTATCTCCCAGAAGTTGCAGTG
1 TATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGATAGCAATCTTATCTCCCTGAAGTTGCAGTG
* * ** ***
71943711 GAGCAGGTTGAAGTTTCA--AGTTT
66 GAGCAGATTAAAG-ACCACTAACCT
* * ** * * *
71943734 TATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATGGCGAATCTTGTCTCCCTAAAGTTGCAGT
1 TATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGATAGC-AATCTTATCTCCCTGAAGTTGCAGT
*
71943799 GGAGCAGATTACAG-CCACTAACCT
65 GGAGCAGATTAAAGACCACTAACCT
* * * *
71943823 TATCTCCCTGAAGTTACAGTAGAACAGGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGCTGCAGT
1 TATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGATAGCAA-TCTTATCTCCCTGAAGTTGCAGT
* * ***
71943887 GGAGTAGACTAAAGATGGCTAACCT
65 GGAGCAGATTAAAGACCACTAACCT
* * * * * * *
71943912 TATCTACCTAAAGTTACAGGGGAGCAGGTAGAAGATAGCAAATCTTATCTTCCTGAAGTAGCTGT
1 TATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGATAGC-AATCTTATCTCCCTGAAGTTGCAGT
71943977 GGAGCAGATT
65 GGAGCAGATT
71943987 GAAGTGACTA
Statistics
Matches: 199, Mismatches: 47, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
87 4 0.02
88 65 0.33
89 100 0.50
90 28 0.14
91 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (89 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAGATAGCAATCTTATCTCCCTGAAGTTGCAGTG
GAGCAGATTAAAGACCACTAACCT
Found at i:71943869 original size:44 final size:43
Alignment explanation
Indices: 71943633--71943991 Score: 245
Period size: 44 Copynumber: 8.1 Consensus size: 43
71943623 TAAGGCTATC
* *
71943633 AAGTTACAAAT-TGTATCTCCCTAAAGTTGCAATGGAGCAGATTG
1 AAGTTAC-AATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * *
71943677 AAGTTATAAAACTTATCTCCCAGAAGTTGCAGTGGAGCAGGTTG
1 AAGTTA-CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * *
71943721 AAGTTTCAAGTTTTATCTCCCTGAAGTTGCAATGGAGCAGACTG
1 AAGTTACAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
** * *
71943765 AAGATGGCGAATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATT-
1 AAG-TTAC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
** * * * * *
71943809 ACAGCCACTAACCTTATCTCCCTGAAGTTACAGTAGAACAGGTTG
1 A-AGTTAC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * *
71943854 AAGTTACAAGTCTTATCTCCCTGAAGCTGCAGTGGAGTAGACTA
1 AAGTTACAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
** * * * * * * *
71943898 AAGATGGCTAACCTTATCTACCTAAAGTTACAGGGGAGCAGGTAG
1 AAG-TTAC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * *
71943943 AAGATAGCAAATCTTATCTTCCTGAAGTAGCTGTGGAGCAGATTG
1 AAGTTA-C-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
71943988 AAGT
1 AAGT
71943992 GACTAATCCA
Statistics
Matches: 234, Mismatches: 70, Indels: 21
0.72 0.22 0.06
Matches are distributed among these distances:
43 4 0.02
44 133 0.57
45 93 0.40
46 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (43 bp):
AAGTTACAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
Found at i:71944144 original size:44 final size:44
Alignment explanation
Indices: 71944044--71944144 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 44
71944034 TCTACCATAG
* * * *
71944044 CAAGTCTTATCTCCTTGACGTTGTAGTGGAGTAGACTAAAACCA
1 CAAGTCTTATCTCCTTAAAGTTGCAGCGGAGTAGACTAAAACCA
* * * * ** *
71944088 CAAATCTCATCTCCTTAAAGTTGCAGCGGGGTAGATTGGAACTA
1 CAAGTCTTATCTCCTTAAAGTTGCAGCGGAGTAGACTAAAACCA
71944132 CAAGTCTTATCTC
1 CAAGTCTTATCTC
71944145 TCTAAAATGG
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
CAAGTCTTATCTCCTTAAAGTTGCAGCGGAGTAGACTAAAACCA
Found at i:71945680 original size:3 final size:3
Alignment explanation
Indices: 71945659--71945704 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
71945649 CTGTTATTTG
* * * *
71945659 TAT TAT CAT TAT TAA TAT TAT TAT CAT TAT TAT TAA TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
71945705 TTTAAACCGT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:71945682 original size:18 final size:18
Alignment explanation
Indices: 71945659--71945700 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
71945649 CTGTTATTTG
*
71945659 TATTATCATTATTAATAT
1 TATTATCATTATTAATAA
*
71945677 TATTATCATTATTATTAA
1 TATTATCATTATTAATAA
71945695 TATTAT
1 TATTAT
71945701 TATTTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTATCATTATTAATAA
Found at i:71951871 original size:19 final size:18
Alignment explanation
Indices: 71951834--71951877 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
71951824 ATACATACAG
71951834 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
71951851 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
71951870 TACTAATT
1 TAATAATT
71951878 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:71956095 original size:19 final size:18
Alignment explanation
Indices: 71956058--71956101 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
71956048 ATACATACAG
71956058 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
71956075 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
71956094 TACTAATT
1 TAATAATT
71956102 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:71960802 original size:40 final size:40
Alignment explanation
Indices: 71960747--71961003 Score: 358
Period size: 40 Copynumber: 6.5 Consensus size: 40
71960737 CGGATGATAA
* * *
71960747 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
71960787 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
71960827 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
71960867 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
71960907 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
71960947 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
71960986 -CTGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
71961004 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
38 16 0.08
39 13 0.07
40 166 0.85
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:71966808 original size:30 final size:30
Alignment explanation
Indices: 71966760--71966827 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
71966750 CACAACTTCT
* *
71966760 TTAATTATATAATAAGAAAGCATGTTT-ATA
1 TTAATTATATAATAAGAAAACAT-TTTAACA
*
71966790 TTAATTATAGT-ATGAGAAAACATTTTAACA
1 TTAATTATA-TAATAAGAAAACATTTTAACA
71966820 TTAATTAT
1 TTAATTAT
71966828 GTTATAGGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 3 0.09
30 29 0.88
31 1 0.03
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (30 bp):
TTAATTATATAATAAGAAAACATTTTAACA
Found at i:71967742 original size:66 final size:66
Alignment explanation
Indices: 71967633--71967773 Score: 228
Period size: 66 Copynumber: 2.1 Consensus size: 66
71967623 TCTGAAATAA
* * * *
71967633 AAATCTTTAGCTCTATCTGTTTCTAGGATTACTTGAAAATTCCTAGTAAGAAAATCAAGTATCTG
1 AAATCTTTTGGTCTATCTGTTTCTAGGATTACTTGAAAATTCCTAGTAAAAAAATCAAGTATCTA
71967698 C
66 C
* *
71967699 AAGTCTTTTGGTCTATCTGTTTTTAGGATTACTTGAAAATTCCTAGTAAAAAAATCAAGTATCTA
1 AAATCTTTTGGTCTATCTGTTTCTAGGATTACTTGAAAATTCCTAGTAAAAAAATCAAGTATCTA
71967764 C
66 C
71967765 AAATCTTTT
1 AAATCTTTT
71967774 TTCTTCCGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (66 bp):
AAATCTTTTGGTCTATCTGTTTCTAGGATTACTTGAAAATTCCTAGTAAAAAAATCAAGTATCTA
C
Found at i:71970227 original size:30 final size:30
Alignment explanation
Indices: 71970193--71970252 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
71970183 ACTTAACAAG
71970193 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
71970223 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
71970253 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:71972267 original size:29 final size:30
Alignment explanation
Indices: 71972218--71972287 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 30
71972208 TTAAATTAAT
* * *
71972218 AATAGTAAAACTATATTTTAATTTTTAAAA
1 AATAATAAAATTATATTTTAATCTTTAAAA
71972248 AATAATAAAATTATA-TTTAATCTTTAAAA
1 AATAATAAAATTATATTTTAATCTTTAAAA
*
71972277 AATTATAAAAT
1 AATAATAAAAT
71972288 ATTAATTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 23 0.64
30 13 0.36
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (30 bp):
AATAATAAAATTATATTTTAATCTTTAAAA
Found at i:71976999 original size:27 final size:23
Alignment explanation
Indices: 71976957--71977396 Score: 120
Period size: 24 Copynumber: 18.7 Consensus size: 23
71976947 GAAAAATAAT
71976957 AAGAGAAAAATGTAAATTAAAATGGA
1 AAGA-AAAAAT-TAAATTAAAAT-GA
*
71976983 AAGAAAGATAATTTAAATGAAAA-GA
1 AAGAAA-A-AA-TTAAATTAAAATGA
*
71977008 AA-AAAAAATTAAATTTAAATGA
1 AAGAAAAAATTAAATTAAAATGA
*
71977030 AATGAGAAAAA-AAAATTAAAATGGA
1 AA-GA-AAAAATTAAATTAAAAT-GA
*
71977055 AAGAAAGATAATTTAAA-TGAAATG-
1 AAGAAA-A-AA-TTAAATTAAAATGA
* *
71977079 AGGAAAAAATTAAATTTAAATGA
1 AAGAAAAAATTAAATTAAAATGA
* *
71977102 AA-AAAATA-T-AATTTAAATGA
1 AAGAAAAAATTAAATTAAAATGA
* * *
71977122 AATAAGAAAA--AAATTTTATATTGA
1 AAGAA-AAAATTAAA--TTAAAATGA
*
71977146 AA-AAAATAATTTAAA-TGAAATG-
1 AAGAAAA-AA-TTAAATTAAAATGA
* *
71977168 -AGAAAAAATTAAATGAAAATGGG
1 AAGAAAAAATTAAATTAAAAT-GA
* * *
71977191 AAG-ATAGA-T-AATTTAAATGA
1 AAGAAAAAATTAAATTAAAATGA
* *
71977211 AATGAAAAAAATAAATTTAAATGAA
1 AA-GAAAAAATTAAATTAAAATG-A
*
71977236 ATGAGAAAAAAATTAAATTAAAATGGG
1 A--AG-AAAAAATTAAATTAAAAT-GA
* *
71977263 AATAAAGATAATTTAAA-TGAAATGA
1 AAGAAA-A-AA-TTAAATTAAAATGA
* * *
71977288 GAA-AAAAAATTAATTTTAAATGT
1 -AAGAAAAAATTAAATTAAAATGA
* *
71977311 AA-AAAAGA-T-AATTTAAATGA
1 AAGAAAAAATTAAATTAAAATGA
*
71977331 AATGGAAAAAAATTAAATGAAAATGA
1 AA--G-AAAAAATTAAATTAAAATGA
* *
71977357 GAAG-ATAAA-TAAAAT-AAATGAA
1 -AAGAAAAAATTAAATTAAAATG-A
71977379 ATATGAAAAAATTAAATT
1 A-A-GAAAAAATTAAATT
71977397 TCAATAGAAA
Statistics
Matches: 313, Mismatches: 47, Indels: 109
0.67 0.10 0.23
Matches are distributed among these distances:
20 32 0.10
21 39 0.12
22 52 0.17
23 30 0.10
24 54 0.17
25 33 0.11
26 32 0.10
27 39 0.12
28 2 0.01
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (23 bp):
AAGAAAAAATTAAATTAAAATGA
Found at i:71977000 original size:21 final size:21
Alignment explanation
Indices: 71976971--71977182 Score: 80
Period size: 21 Copynumber: 9.5 Consensus size: 21
71976961 GAAAAATGTA
* *
71976971 AATTAAAATGGAAAGAAAGAT
1 AATTTAAATGGAAAGAAAAAT
*
71976992 AATTTAAATGAAAAGAAAAAAAAATT
1 AATTTAAATG----GAAAGAAAAA-T
* *
71977018 AAATTTAAATGAAATGAGAAAAAA
1 -AATTTAAATGGAA--AGAAAAAT
* *
71977042 AAATTAAAATGGAAAGAAAGAT
1 AATTTAA-ATGGAAAGAAAAAT
*
71977064 AATTTAAATGAAATGAGGAAAAAATT
1 AATTTAAATGGAA--A-G-AAAAA-T
71977090 AAATTTAAAT-GAAA-AAAATAT
1 -AATTTAAATGGAAAGAAAA-AT
*
71977111 AATTTAAATGAAATAAGAAAAA-
1 AATTTAAATG-GA-AAGAAAAAT
* *
71977133 AATTTTATATTG-AA-AAAAAT
1 AA-TTTAAATGGAAAGAAAAAT
71977153 AATTTAAAT-GAAATGAGAAAA-
1 AATTTAAATGGAAA-GA-AAAAT
71977174 AA-TTAAATG
1 AATTTAAATG
71977183 AAAATGGGAA
Statistics
Matches: 145, Mismatches: 19, Indels: 54
0.67 0.09 0.25
Matches are distributed among these distances:
18 1 0.01
19 13 0.09
20 19 0.13
21 22 0.15
22 20 0.14
23 18 0.12
24 11 0.08
25 18 0.12
26 4 0.03
27 19 0.13
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.25
Consensus pattern (21 bp):
AATTTAAATGGAAAGAAAAAT
Found at i:71977054 original size:72 final size:72
Alignment explanation
Indices: 71976959--71977428 Score: 373
Period size: 72 Copynumber: 6.7 Consensus size: 72
71976949 AAAATAATAA
* *
71976959 GAGAAAAATGTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGAAAAAAAAATTAAATTT
1 GAGAAAAA-ATAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATG-AAAAAAAATTAAATTT
71977024 AAATGAAAT
64 AAATGAAAT
*
71977033 GAGAAAAAA-AAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGGAAAAAATTAAATTTA
1 GAGAAAAAATAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGA-AAAAAAATTAAATTTA
71977097 AATG-AA-
65 AATGAAAT
* * * * * *
71977103 -A-AAAATAT-AATTTAAATGAAATAAGAAA-AAAATTT-TAT--ATTG-AAAAAAA-T-AATTT
1 GAGAAAAAATAAATTAAAATG-GA-AAGAAAGATAATTTAAATGAAATGAAAAAAAATTAAATTT
71977158 AAATGAAAT
64 AAATGAAAT
* * *
71977167 GAGAAAAAATTAAATGAAAATGGGAAGATAGATAATTTAAATGAAATG-AAAAAAA-TAAATTTA
1 GAGAAAAAA-TAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAAAAAAAATTAAATTTA
71977230 AATGAAAT
65 AATGAAAT
* * *
71977238 GAGAAAAAAATTAAATTAAAATGGGAATAAAGATAATTTAAATGAAATGAGAAAAAAAATTAATT
1 GAG-AAAAAA-TAAATTAAAATGGAAAGAAAGATAATTTAAATGAAAT--GAAAAAAAATTAAAT
71977303 TTAAATG---T
62 TTAAATGAAAT
* * *
71977311 -A-AAAAAGAT-AATTTAAAT-GAAATGGAAA-A-AAATTAAATGAAAATGAGAAGATAAA-TAA
1 GAGAAAAA-ATAAATTAAAATGGAAA--GAAAGATAATTTAAATG-AAATGA-AA-AAAAATTAA
*
71977369 A-ATAAATGAAAT
60 ATTTAAATGAAAT
** * * *
71977381 -ATGAAAAAATTAAATTTCAATAGAAAAAAATATAATTTAAATGAAATG
1 GA-GAAAAAA-TAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATG
71977429 GAAATTCAAA
Statistics
Matches: 327, Mismatches: 33, Indels: 73
0.76 0.08 0.17
Matches are distributed among these distances:
62 10 0.03
63 3 0.01
64 6 0.02
65 1 0.00
66 13 0.04
67 15 0.05
68 43 0.13
69 25 0.08
70 28 0.09
71 22 0.07
72 106 0.32
73 15 0.05
74 22 0.07
75 7 0.02
76 11 0.03
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (72 bp):
GAGAAAAAATAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAAAAAAAATTAAATTTAA
ATGAAAT
Found at i:71977060 original size:29 final size:29
Alignment explanation
Indices: 71976997--71977060 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
71976987 AAGATAATTT
**
71976997 AAATGAAA--AGAAAAAAAAATTAAATTT
1 AAATGAAATGAGAAAAAAAAATTAAATGG
71977024 AAATGAAATGAGAAAAAAAAATTAAAATGG
1 AAATGAAATGAGAAAAAAAAATT-AAATGG
71977054 AAA-GAAA
1 AAATGAAA
71977061 GATAATTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 8 0.25
29 17 0.53
30 7 0.22
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.17
Consensus pattern (29 bp):
AAATGAAATGAGAAAAAAAAATTAAATGG
Found at i:71977107 original size:20 final size:19
Alignment explanation
Indices: 71977081--71977186 Score: 83
Period size: 20 Copynumber: 5.3 Consensus size: 19
71977071 ATGAAATGAG
*
71977081 GAAAAAATTAAATTTAAAT
1 GAAAAAAATAAATTTAAAT
71977100 GAAAAAAATATAATTTAAAT
1 GAAAAAAATA-AATTTAAAT
* *
71977120 GAAATAAGAAAAAAATTTTATATT
1 G-AA-AA-AAATAAA-TTTA-AAT
71977144 GAAAAAAAT-AATTTAAAT
1 GAAAAAAATAAATTTAAAT
71977162 GAAATGAGAAA-AAA-TTAAAT
1 GAAA--A-AAATAAATTTAAAT
71977182 GAAAA
1 GAAAA
71977187 TGGGAAGATA
Statistics
Matches: 72, Mismatches: 5, Indels: 21
0.73 0.05 0.21
Matches are distributed among these distances:
18 7 0.10
19 13 0.18
20 23 0.32
21 10 0.14
22 6 0.08
23 10 0.14
24 3 0.04
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.27
Consensus pattern (19 bp):
GAAAAAAATAAATTTAAAT
Found at i:71977116 original size:47 final size:45
Alignment explanation
Indices: 71977019--71977236 Score: 241
Period size: 47 Copynumber: 4.8 Consensus size: 45
71977009 AAAAAAATTA
* *
71977019 AATTTAAATGAAATGAGAAAAAA-AAATTAAAATGGAAAGAAAGAT
1 AATTTAAATGAAATGAGAAAAAATAAATTTAAAT-GAAAAAAAGAT
*
71977064 AATTTAAATGAAATGAGGAAAAAATTAAATTTAAATGAAAAAAATAT
1 AATTTAAATGAAATGA-GAAAAAA-TAAATTTAAATGAAAAAAAGAT
* * *
71977111 AATTTAAATGAAATAAG-AAAAA-AATTTTATATTG-AAAAAA-AT
1 AATTTAAATGAAATGAGAAAAAATAAATTTA-AATGAAAAAAAGAT
** * * *
71977153 AATTTAAATGAAATGAGAAAAAATTAAATGAAAATGGGAAGATAGAT
1 AATTTAAATGAAATGAGAAAAAA-TAAATTTAAAT-GAAAAAAAGAT
71977200 AATTTAAATGAAATGA-AAAAAATAAATTTAAATGAAA
1 AATTTAAATGAAATGAGAAAAAATAAATTTAAATGAAA
71977237 TGAGAAAAAA
Statistics
Matches: 147, Mismatches: 16, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
42 18 0.12
43 17 0.12
44 8 0.05
45 35 0.24
46 18 0.12
47 42 0.29
48 9 0.06
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.26
Consensus pattern (45 bp):
AATTTAAATGAAATGAGAAAAAATAAATTTAAATGAAAAAAAGAT
Found at i:71977236 original size:89 final size:90
Alignment explanation
Indices: 71976995--71977236 Score: 287
Period size: 89 Copynumber: 2.7 Consensus size: 90
71976985 GAAAGATAAT
* *
71976995 TTAAATGAAAA-GAAAAAAAAATTAAATTTAAATGAAATGAGAAAAAAAAATTAAAATGGAAAGA
1 TTAAATGAAAATGAAAAAAAGA-T-AATTTAAATGAAATGA-AAAAAAAAATTTAAAT-GAAAGA
71977059 AAGATAATTTAAATGAAATGAGGAAAAAA
62 AAGATAATTTAAATGAAATGAGGAAAAAA
** * * *
71977088 TTAAATTTAAATGAAAAAAATATAATTTAAATGAAAT-AAGAAAAAAATTTTATATTGAAA-AAA
1 TTAAATGAAAATGAAAAAAAGATAATTTAAATGAAATGAA-AAAAAAAATTTA-AATGAAAGAAA
71977151 -ATAATTTAAATGAAATGA-GAAAAAA
64 GATAATTTAAATGAAATGAGGAAAAAA
* * *
71977176 TTAAATGAAAATGGGAAGATAGATAATTTAAATGAAATGAAAAAAATAAATTTAAATGAAA
1 TTAAATGAAAAT-GAAAAAAAGATAATTTAAATGAAATGAAAAAAA-AAATTTAAATGAAA
71977237 TGAGAAAAAA
Statistics
Matches: 129, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
88 17 0.13
89 50 0.39
90 12 0.09
91 15 0.12
92 16 0.12
93 10 0.08
94 9 0.07
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.25
Consensus pattern (90 bp):
TTAAATGAAAATGAAAAAAAGATAATTTAAATGAAATGAAAAAAAAAATTTAAATGAAAGAAAGA
TAATTTAAATGAAATGAGGAAAAAA
Found at i:71977260 original size:208 final size:208
Alignment explanation
Indices: 71976962--71977344 Score: 594
Period size: 208 Copynumber: 1.8 Consensus size: 208
71976952 ATAATAAGAG
*
71976962 AAAAATGTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGAAAAAAAAATTAAATTTAAA
1 AAAAATGTAAATGAAAATGGAAAGAAAGATAATTTAAATGAAAAG-AAAAAAAATTAAATTTAAA
*
71977027 TGAAATGAGAAAAAAAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAG-GAAAAAATTA
65 TGAAATGAGAAAAAAAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGAAAAAAAATTA
*
71977091 AATTTAAATGAAAAAAATATAATTTAAATGAAATAAGAAAAAAATTTTATATTGAAAAAAATAAT
130 AATTTAAATGAAAAAAAGATAATTTAAATGAAAT-AGAAAAAAATTTTATATTGAAAAAAATAAT
71977156 TTAAATGAAATGAGA
194 TTAAATGAAATGAGA
* * *
71977171 AAAAAT-TAAATGAAAATGGGAAGATAGATAATTTAAATGAAATG-AAAAAAA-TAAATTTAAAT
1 AAAAATGTAAATGAAAATGGAAAGAAAGATAATTTAAATGAAAAGAAAAAAAATTAAATTTAAAT
* *
71977233 GAAATGAGAAAAAAATTAAATTAAAATGGGAATAAAGATAATTTAAATGAAATGAGAAAAAAAAT
66 GAAATGAG-AAAAAA--AAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGAAAAAAAAT
* * *
71977298 TAATTTTAAATGTAAAAAAGATAATTTAAATGAAATGGAAAAAAATT
128 TAAATTTAAATGAAAAAAAGATAATTTAAATGAAATAGAAAAAAATT
71977345 AAATGAAAAT
Statistics
Matches: 159, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
205 19 0.12
206 13 0.08
208 81 0.51
209 46 0.29
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (208 bp):
AAAAATGTAAATGAAAATGGAAAGAAAGATAATTTAAATGAAAAGAAAAAAAATTAAATTTAAAT
GAAATGAGAAAAAAAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGAAAAAAAATTAA
ATTTAAATGAAAAAAAGATAATTTAAATGAAATAGAAAAAAATTTTATATTGAAAAAAATAATTT
AAATGAAATGAGA
Found at i:71977349 original size:167 final size:162
Alignment explanation
Indices: 71976981--71977406 Score: 465
Period size: 160 Copynumber: 2.6 Consensus size: 162
71976971 AATTAAAATG
* * ** *
71976981 GAAAGAAAGATAATTTAAATGAAAAGAAAAAAAAATTAAATTTAAATGA-AATGA-GAA-AAAA-
1 GAAA-AAA-ATAATTTAAATGAAATG-AGAAAAAATTAAATGAAAATGAGAA-GATAAATAAAAT
* * *
71977042 AAATTAAA-ATGGAAAGAAAGAT-AATTTAAATGAAATGAGGAAAAAATTAAATTTAAATGAAAA
62 AAATGAAATAT-GAAA-AAA-ATAAATTTAAATGAAATGAGAAAAAAATTAAATTAAAATGAAAA
* *
71977105 AAATATAATTTAAATGAAATAAGAAAAAAATTTTATATT
124 AAAGATAATTTAAATGAAATAAGAAAAAAATTTTATAAT
* * **
71977144 GAAAAAAATAATTTAAATGAAATGAGAAAAAATTAAATGAAAATGGGAAGATAGATAATTTAAAT
1 GAAAAAAATAATTTAAATGAAATGAGAAAAAATTAAATGAAAATGAGAAGATAAATAAAATAAAT
* *
71977209 G-AA-ATGAAAAAAATAAATTTAAATGAAATGAGAAAAAAATTAAATTAAAATGGGAATAAAGAT
66 GAAATATGAAAAAAATAAATTTAAATGAAATGAGAAAAAAATTAAATTAAAAT-GAAAAAAAGAT
* *
71977272 AATTTAAATGAAATGAGAAAAAAAATTAATTTTAAAT
130 AATTTAAATGAAATAAG-AAAAAAATT--TTAT-AAT
71977309 GTAAAAAAGATAATTTAAATGAAATG-GAAAAAAATTAAATGAAAATGAGAAGATAAATAAAATA
1 G-AAAAAA-ATAATTTAAATGAAATGAG-AAAAAATTAAATGAAAATGAGAAGATAAATAAAATA
* *
71977373 AATGAAATATGAAAAAATTAAATTTCAATAGAAA
63 AATGAAATATGAAAAAAATAAATTTAAAT-GAAA
71977407 AAAATATAAT
Statistics
Matches: 223, Mismatches: 24, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
159 2 0.01
160 57 0.26
161 47 0.21
162 18 0.08
163 8 0.04
164 3 0.01
165 3 0.01
166 7 0.03
167 53 0.24
168 2 0.01
169 19 0.09
170 4 0.02
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (162 bp):
GAAAAAAATAATTTAAATGAAATGAGAAAAAATTAAATGAAAATGAGAAGATAAATAAAATAAAT
GAAATATGAAAAAAATAAATTTAAATGAAATGAGAAAAAAATTAAATTAAAATGAAAAAAAGATA
ATTTAAATGAAATAAGAAAAAAATTTTATAAT
Found at i:71977354 original size:95 final size:91
Alignment explanation
Indices: 71977210--71977432 Score: 270
Period size: 95 Copynumber: 2.4 Consensus size: 91
71977200 AATTTAAATG
* * *
71977210 AAATGAAAAAAATAAATTTAAATGAAATGAGAAAAAAATTAAATTAAAATGGGAATA-AAGATAA
1 AAATGAAAAAAAT-AATTTAAATGAAATG-GAAAAAAATTAAATGAAAATGAGAAGATAA-ATAA
** *
71977274 TTTAAATGAAATGA-GAAAAAAAATTAATTTT
63 AATAAATGAAAT-ATG--AAAAAATTAAATTT
71977305 AAATGTAAAAAAGATAATTTAAATGAAATGGAAAAAAATTAAATGAAAATGAGAAGATAAATAAA
1 AAATG-AAAAAA-ATAATTTAAATGAAATGGAAAAAAATTAAATGAAAATGAGAAGATAAATAAA
71977370 ATAAATGAAATATGAAAAAATTAAATTT
64 ATAAATGAAATATGAAAAAATTAAATTT
*
71977398 CAATAGAAAAAAATATAATTTAAATGAAATGGAAA
1 AAAT-G-AAAAAA-ATAATTTAAATGAAATGGAAA
71977433 TTCAAATGAA
Statistics
Matches: 114, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
93 16 0.14
94 29 0.25
95 44 0.39
96 23 0.20
97 2 0.02
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.25
Consensus pattern (91 bp):
AAATGAAAAAAATAATTTAAATGAAATGGAAAAAAATTAAATGAAAATGAGAAGATAAATAAAAT
AAATGAAATATGAAAAAATTAAATTT
Found at i:71977417 original size:21 final size:20
Alignment explanation
Indices: 71977367--71977426 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
71977357 GAAGATAAAT
*
71977367 AAAATAAA-TGAAATATGAAA
1 AAAATAAATTTAAATA-GAAA
* *
71977387 AAATTAAATTTCAATAGAAA
1 AAAATAAATTTAAATAGAAA
71977407 AAAATATAATTTAAAT-GAAA
1 AAAATA-AATTTAAATAGAAA
71977427 TGGAAATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 20 0.61
21 13 0.39
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.27
Consensus pattern (20 bp):
AAAATAAATTTAAATAGAAA
Found at i:71977422 original size:47 final size:48
Alignment explanation
Indices: 71977210--71977432 Score: 230
Period size: 48 Copynumber: 4.8 Consensus size: 48
71977200 AATTTAAATG
71977210 AAAT-GAAAAAAATA-AATTTAAATGAAATGAGAAAAAAATTAAATTA
1 AAATAGAAAAAAATATAATTTAAATGAAATGAGAAAAAAATTAAATTA
* * * * * *
71977256 AAATGGGAATAAAGATAATTTAAATGAAATGAGAAAAAAAATTAATTTT
1 AAATAGAAAAAAATATAATTTAAATGAAATGAG-AAAAAAATTAAATTA
* * *
71977305 AAAT-GTAAAAAAGATAATTTAAATGAAATG-GAAAAAAATTAAATGA
1 AAATAGAAAAAAATATAATTTAAATGAAATGAGAAAAAAATTAAATTA
* * *
71977351 AAATGAGAAGATAAATA-AA-ATAAATGAAAT-ATG-AAAAAATTAAATTT
1 AAAT-AGAA-AAAAATATAATTTAAATGAAATGA-GAAAAAAATTAAATTA
*
71977398 CAATAGAAAAAAATATAATTTAAATGAAATG-GAAA
1 AAATAGAAAAAAATATAATTTAAATGAAATGAGAAA
71977433 TTCAAATGAA
Statistics
Matches: 146, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
45 6 0.04
46 27 0.18
47 45 0.31
48 46 0.32
49 22 0.15
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.25
Consensus pattern (48 bp):
AAATAGAAAAAAATATAATTTAAATGAAATGAGAAAAAAATTAAATTA
Found at i:71977433 original size:11 final size:10
Alignment explanation
Indices: 71977419--71977492 Score: 58
Period size: 11 Copynumber: 6.8 Consensus size: 10
71977409 AATATAATTT
71977419 AAATGAAATGG
1 AAATGAAAT-G
*
71977430 AAATTCAAATG
1 AAA-TGAAATG
71977441 AAATGAAATAG
1 AAATGAAAT-G
* *
71977452 AAATTCAAATT
1 AAA-TGAAATG
*
71977463 AAATGGAATTG
1 AAAT-GAAATG
71977474 AAATAGAAATG
1 AAAT-GAAATG
71977485 AAATGAAA
1 AAATGAAA
71977493 AAAAAAAAGA
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
10 10 0.20
11 30 0.60
12 10 0.20
ACGTcount: A:0.58, C:0.03, G:0.16, T:0.23
Consensus pattern (10 bp):
AAATGAAATG
Found at i:71977444 original size:5 final size:5
Alignment explanation
Indices: 71977419--71977492 Score: 58
Period size: 5 Copynumber: 13.6 Consensus size: 5
71977409 AATATAATTT
* * *
71977419 AAATG AAATGG AAATTC AAATG AAATG AAATAG AAATTC AAATT AAATGG
1 AAATG AAAT-G AAA-TG AAATG AAATG AAAT-G AAA-TG AAATG AAAT-G
*
71977469 AATTG AAATAG AAATG AAATG AAA
1 AAATG AAAT-G AAATG AAATG AAA
71977493 AAAAAAAAGA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
5 32 0.57
6 22 0.39
7 2 0.04
ACGTcount: A:0.58, C:0.03, G:0.16, T:0.23
Consensus pattern (5 bp):
AAATG
Found at i:71977444 original size:22 final size:22
Alignment explanation
Indices: 71977419--71977492 Score: 94
Period size: 22 Copynumber: 3.4 Consensus size: 22
71977409 AATATAATTT
*
71977419 AAATGAAATGGAAATTCAAATG
1 AAATGAAATAGAAATTCAAATG
*
71977441 AAATGAAATAGAAATTCAAATT
1 AAATGAAATAGAAATTCAAATG
* * **
71977463 AAATGGAATTGAAATAGAAATG
1 AAATGAAATAGAAATTCAAATG
71977485 AAATGAAA
1 AAATGAAA
71977493 AAAAAAAAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.58, C:0.03, G:0.16, T:0.23
Consensus pattern (22 bp):
AAATGAAATAGAAATTCAAATG
Found at i:71977461 original size:17 final size:16
Alignment explanation
Indices: 71977414--71977449 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
71977404 AAAAAAATAT
*
71977414 AATTTAAATGAAATGGA
1 AATTCAAATGAAAT-GA
71977431 AATTCAAATGAAATGA
1 AATTCAAATGAAATGA
71977447 AAT
1 AAT
71977450 AGAAATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.56, C:0.03, G:0.14, T:0.28
Consensus pattern (16 bp):
AATTCAAATGAAATGA
Found at i:71977464 original size:208 final size:202
Alignment explanation
Indices: 71976962--71977470 Score: 481
Period size: 208 Copynumber: 2.4 Consensus size: 202
71976952 ATAATAAGAG
* * * * * *
71976962 AAAAATGTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGAAAAAAAAATT-AAATTTAA
1 AAAAAT-TAAATGAAAATAGAAAAAAAGATAATTTAAATGAAATG----AGAAATTCAAA-TGAA
** *
71977026 ATGAAATGAGAAAAAAAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGGAAAAAATTA
60 ATGAAAT-AG-AAATTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGAAAAAAATTA
* * * * *
71977091 AATTTAAATGAAAAAAATATAATTTAAATGAAATAAGAAAAAAATTTTATATTGAAAAAAATAAT
123 AATTTAAATGAAAAAAAGATAATTTAAATGAAATAAGAAAAAAATTTGAAAATGAAAAAAATAAA
*
71977156 TTAAATGAAATGAGA
188 ATAAATGAAATGAGA
* * * * * *
71977171 AAAAATTAAATGAAAATGGGAAGATAGATAATTTAAATGAAATGAAAAAAATAAATTTAAATGAA
1 AAAAATTAAATGAAAATAGAAAAAAAGATAATTTAAATGAAATG------AGAAATTCAAATGAA
* * *
71977236 ATGAGAA-AAAAATTAAATTAAAATGGGAATAAAGATAATTTAAATGAAATGAGAAAAAAAATTA
60 ATGA-AATAGAAATTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAG-AAAAAAATTA
* * *
71977300 ATTTTAAATGTAAAAAAGATAATTTAAATGAAAT-GGAAAAAAATTAAATGAAAATGAGAAGATA
123 AATTTAAATGAAAAAAAGATAATTTAAATGAAATAAGAAAAAAATT---TGAAAATGA-AA-A-A
71977364 AATAAAATAAATGAAAT-ATGA
182 AATAAAATAAATGAAATGA-GA
*** *
71977385 AAAAATTAAATTTCAATAGAAAAAAATATAATTTAAATGAAATG-GAAATTCAAATGAAATGAAA
1 AAAAATTAAATGAAAATAGAAAAAAAGATAATTTAAATGAAATGAGAAATTCAAATGAAATGAAA
71977449 TAGAAATTCAAATT-AAATGGAA
66 TAGAAATT-AAATTAAAATGGAA
71977471 TTGAAATAGA
Statistics
Matches: 253, Mismatches: 33, Indels: 30
0.80 0.10 0.09
Matches are distributed among these distances:
206 2 0.01
207 29 0.11
208 89 0.35
209 47 0.19
210 17 0.07
211 11 0.04
212 2 0.01
213 2 0.01
214 54 0.21
ACGTcount: A:0.62, C:0.01, G:0.12, T:0.25
Consensus pattern (202 bp):
AAAAATTAAATGAAAATAGAAAAAAAGATAATTTAAATGAAATGAGAAATTCAAATGAAATGAAA
TAGAAATTAAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGAAAAAAATTAAATTTAAA
TGAAAAAAAGATAATTTAAATGAAATAAGAAAAAAATTTGAAAATGAAAAAAATAAAATAAATGA
AATGAGA
Found at i:71977917 original size:23 final size:23
Alignment explanation
Indices: 71977867--71977921 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 23
71977857 GACTACTTCT
*
71977867 AATT-AATATGAAAAAAATATGA
1 AATTGAATATGAAAAAAAAATGA
*
71977889 AA-TGAAT-TGAAAAAAAAAGTTA
1 AATTGAATATGAAAAAAAAA-TGA
71977911 AATTGAA-ATGA
1 AATTGAATATGA
71977922 GACTACTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
21 11 0.41
22 9 0.33
23 7 0.26
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (23 bp):
AATTGAATATGAAAAAAAAATGA
Found at i:71977987 original size:5 final size:5
Alignment explanation
Indices: 71977979--71978096 Score: 51
Period size: 5 Copynumber: 21.6 Consensus size: 5
71977969 AAATTAATTT
* *
71977979 AAATG AAATG TTAAATG AAATATG AATATG AAATG AAATG TAATTTG TAATG
1 AAATG AAATG --AAATG -AA-ATG AA-ATG AAATG AAATG -AA-ATG AAATG
* * *
71978031 AATATG AAATT AAATG AAATG TTAAATG AATATA AAATT AAATG --ATG
1 AA-ATG AAATG AAATG AAATG --AAATG AA-ATG AAATG AAATG AAATG
* *
71978078 ATTATG AAATG GAATG AAA
1 A-AATG AAATG AAATG AAA
71978097 GGTGAAAAGA
Statistics
Matches: 88, Mismatches: 13, Indels: 24
0.70 0.10 0.19
Matches are distributed among these distances:
3 3 0.03
5 44 0.50
6 26 0.30
7 15 0.17
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (5 bp):
AAATG
Found at i:71977992 original size:12 final size:12
Alignment explanation
Indices: 71977977--71978060 Score: 57
Period size: 12 Copynumber: 6.8 Consensus size: 12
71977967 AAAAATTAAT
71977977 TTAAATGAAATG
1 TTAAATGAAATG
*
71977989 TTAAATGAAATA
1 TTAAATGAAATG
*
71978001 TGAATATGAAATG
1 TTAA-ATGAAATG
*
71978014 --AAATGTAAT-
1 TTAAATGAAATG
*
71978023 TTGTAATGAATATG
1 TT-AAATGAA-ATG
71978037 AAATTAAATGAAATG
1 ---TTAAATGAAATG
71978052 TTAAATGAA
1 TTAAATGAA
71978061 TATAAAATTA
Statistics
Matches: 56, Mismatches: 7, Indels: 18
0.69 0.09 0.22
Matches are distributed among these distances:
10 6 0.11
11 2 0.04
12 28 0.50
13 9 0.16
15 3 0.05
16 6 0.11
17 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.33
Consensus pattern (12 bp):
TTAAATGAAATG
Found at i:71978038 original size:28 final size:28
Alignment explanation
Indices: 71978000--71978075 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 28
71977990 TAAATGAAAT
* * *
71978000 ATGAATATGAAATGAAATGTAAT-TTGTA
1 ATGAATATGAAATTAAATGAAATGTT-AA
71978028 ATGAATATGAAATTAAATGAAATGTTAA
1 ATGAATATGAAATTAAATGAAATGTTAA
*
71978056 ATGAATATAAAATTAAATGA
1 ATGAATATGAAATTAAATGA
71978076 TGATTATGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 41 0.95
29 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (28 bp):
ATGAATATGAAATTAAATGAAATGTTAA
Found at i:71980018 original size:20 final size:20
Alignment explanation
Indices: 71979995--71980041 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
71979985 GTCACATATA
71979995 CCCGTGTGGCTTGGGACACG
1 CCCGTGTGGCTTGGGACACG
*
71980015 CCCGTGTGGCTTGGGAGACG
1 CCCGTGTGGCTTGGGACACG
71980035 CCCGTGT
1 CCCGTGT
71980042 CTTCAACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.09, C:0.30, G:0.40, T:0.21
Consensus pattern (20 bp):
CCCGTGTGGCTTGGGACACG
Found at i:71982015 original size:42 final size:42
Alignment explanation
Indices: 71981927--71982015 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
71981917 ATATCAGTGC
* ** * *
71981927 CGATGCTATATCCCAGACATGGTCTTATACGGGACCTCATAT
1 CGATGCCATATCCCAGACATGGTCTTATACGAAACCACATAA
* * *
71981969 CGATGCCATGTCCCAGACATGGTCTTATACGAAATCACTTAA
1 CGATGCCATATCCCAGACATGGTCTTATACGAAACCACATAA
71982011 CGATG
1 CGATG
71982016 TCAAAGCCGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
CGATGCCATATCCCAGACATGGTCTTATACGAAACCACATAA
Found at i:71982104 original size:48 final size:48
Alignment explanation
Indices: 71982035--71982240 Score: 148
Period size: 49 Copynumber: 4.2 Consensus size: 48
71982025 TATCCCTGAT
* * * *
71982035 ATGGTCTTATACGAG-ATCACATATTGGTGCCGATGCCATGTCCCAAAT
1 ATGGTCTTACACTAGCA-CACATATCGGTGCCGATGCCATGTCCCAAAC
* **** *
71982083 ATGGTCTTACACTAGCACACATGTCAACACCGATGCCATGT-CCATGAC
1 ATGGTCTTACACTAGCACACATATCGGTGCCGATGCCATGTCCCA-AAC
* * * * *
71982131 ATGGTCTTACACTGGCTCTCATCTCGGATGCTGATGCCATGTCCCAAAC
1 ATGGTCTTACACTAGCACACATATCGG-TGCCGATGCCATGTCCCAAAC
* * * * * * *
71982180 ATGGTCTTACAC-CGGATCTCATCTCGAATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGCA-CACATATCG-GTGCCGATGCCATGTCCCAAAC
71982229 ATGGTCTTACAC
1 ATGGTCTTACAC
71982241 GAGATCTCAT
Statistics
Matches: 125, Mismatches: 27, Indels: 11
0.77 0.17 0.07
Matches are distributed among these distances:
47 3 0.02
48 54 0.43
49 65 0.52
50 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGGTCTTACACTAGCACACATATCGGTGCCGATGCCATGTCCCAAAC
Found at i:71982182 original size:49 final size:49
Alignment explanation
Indices: 71982062--71982240 Score: 209
Period size: 49 Copynumber: 3.7 Consensus size: 49
71982052 CACATATTGG
* * * * *
71982062 TGCCGATGCCATGTCCCAAATATGGTCTTACACTAGCACACATGTC-AA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTCGAA
** * *
71982110 CACCGATGCCATGT-CCATGACATGGTCTTACACTGGCTCTCATCTCGGA
1 TGCCGATGCCATGTCCCA-AACATGGTCTTACACTGGCTCTCATCTCGAA
* * *
71982159 TGCTGATGCCATGTCCCAAACATGGTCTTACACCGGATCTCATCTCGAA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTCGAA
* *
71982208 TGCCAATGCCATGTCCCAGACATGGTCTTACAC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACAC
71982241 GAGATCTCAT
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
47 3 0.03
48 34 0.31
49 69 0.63
50 3 0.03
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTCGAA
Found at i:71982249 original size:98 final size:96
Alignment explanation
Indices: 71982035--71982250 Score: 240
Period size: 97 Copynumber: 2.2 Consensus size: 96
71982025 TATCCCTGAT
* * * *
71982035 ATGGTCTTATACGAGATCACATATTGGTGCCGATGCCATGTCCCAAATATGGTCTTACACTAGCA
1 ATGGTCTTACACGAGATCTCATATCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
* *
71982100 CACATGTCAACACCGATGCCATGTCCATGAC
66 CACATCTCAACACCAATGCCATGTCCATGAC
* * * *
71982131 ATGGTCTTACACTG-GCTCTCATCTCGGATGCTGATGCCATGTCCCAAACATGGTCTTACAC-CG
1 ATGGTCTTACAC-GAGATCTCATATCGG-TGCCGATGCCATGTCCCAAACATGGTCTTACACTAG
* * **
71982194 GATCTCATCTCGAATGCCAATGCCATGTCCCA-GAC
64 CA-CACATCTC-AACACCAATGCCATGT-CCATGAC
71982229 ATGGTCTTACACGAGATCTCAT
1 ATGGTCTTACACGAGATCTCAT
71982251 TAATCGTGGT
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
96 22 0.22
97 39 0.39
98 35 0.35
99 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (96 bp):
ATGGTCTTACACGAGATCTCATATCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
CACATCTCAACACCAATGCCATGTCCATGAC
Found at i:71982250 original size:49 final size:48
Alignment explanation
Indices: 71981969--71982246 Score: 213
Period size: 48 Copynumber: 5.8 Consensus size: 48
71981959 GACCTCATAT
* * * * *
71981969 CGATGCCATGTCCCAGACATGGTCTTATACGAAATCACTTAACGATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGC
* * * * * * * * *
71982017 CAAAGCCGTATCCCTGATATGGTCTTATACGAGATCACATATTGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGC
* * * * * **
71982065 CGATGCCATGTCCCAAATATGGTCTTACACTAGCA-CACATGTCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACGAG-ATCACATATCGATGC
* * *
71982113 CGATGCCATGT-CCATGACATGGTCTTACACTG-GCTCTCATCTCGGATGC
1 CGATGCCATGTCCCA-GACATGGTCTTACAC-GAGATCACATATC-GATGC
* * * *
71982162 TGATGCCATGTCCCAAACATGGTCTTACACCG-GATCTCATCTCGAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACA-CGAGATCACATATCG-ATGC
*
71982211 CAATGCCATGTCCCAGACATGGTCTTACACGAGATC
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATC
71982247 TCATTAATCG
Statistics
Matches: 180, Mismatches: 41, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
47 3 0.02
48 102 0.57
49 71 0.39
50 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGC
Found at i:71984478 original size:16 final size:17
Alignment explanation
Indices: 71984465--71984498 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71984455 CTACAATATT
71984465 AATACAAAAAAATATAA
1 AATACAAAAAAATATAA
* *
71984482 AATTCAAAAAAAAATAA
1 AATACAAAAAAATATAA
71984499 TACGCACTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (17 bp):
AATACAAAAAAATATAA
Found at i:71984842 original size:89 final size:89
Alignment explanation
Indices: 71984599--71984918 Score: 471
Period size: 90 Copynumber: 3.6 Consensus size: 89
71984589 TATGGATTAA
* *
71984599 ATTAAATTTACAAATACAAAAAAATACAAACATTCTAAGAAATTAATACATGAAAATATAAAAAT
1 ATTAAATTTACAGATA-TAAAAAATACAAACATTCTAAGAAATTAATACATGAAAATATAAAAAT
* *
71984664 GAAACCTTAAATCCTAGACAACTAT
65 GATACCTTAAATCCTAAACAACTAT
* *
71984689 ATTAAATTTATAGATATAATAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
1 ATTAAATTTACAGATATAA-AAAATACAAACATTCTAAGAAATTAATACATGAAAATATAAAAAT
* *
71984754 GATACCTTACATCCTAAATAACTAT
65 GATACCTTAAATCCTAAACAACTAT
* * *
71984779 AATAAATTTACAGATGTAAAAAATAGAAACATTCTAAGAAATTAATACATGAAAATATAAAAATG
1 ATTAAATTTACAGATATAAAAAATACAAACATTCTAAGAAATTAATACATGAAAATATAAAAATG
*
71984844 ATACCTTAAATCCTAAACAACTAC
66 ATACCTTAAATCCTAAACAACTAT
*
71984868 ATTAAATTCACAGATATAAAAAAAATACAAACATTCTAAAGAAA-TAATACA
1 ATTAAATTTACAGATAT--AAAAAATACAAACATTCT-AAGAAATTAATACA
71984919 ATTATTTTGA
Statistics
Matches: 206, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
89 81 0.39
90 95 0.46
91 24 0.12
92 6 0.03
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (89 bp):
ATTAAATTTACAGATATAAAAAATACAAACATTCTAAGAAATTAATACATGAAAATATAAAAATG
ATACCTTAAATCCTAAACAACTAT
Found at i:71985672 original size:177 final size:180
Alignment explanation
Indices: 71985461--71985811 Score: 609
Period size: 177 Copynumber: 2.0 Consensus size: 180
71985451 AAAAAGGTGG
**
71985461 TGCCAGCCATTAGTGTCCCAAAGAAAAAAAATTACATTGGGAGGCAAAAAAAGTACTTGGTGTCG
1 TGCCAGCCATTAGTGTCCCAAAGAAAAAAAATTACATTGGGAGGCAAAAAAAAAACTTGGTGTCG
* *
71985526 GCCATCACATGCCCAACACCTAATTTTTTTTTTAAAAATTTAGCTGGTGTTGGCCATCAGTGTTC
66 GCCATCACATGCCCAACACCTAATTTTTTTTTTAAAAATTTAACTGGTGATGGCCATCAGTGTTC
*
71985591 -AAAAAAAAA-TTTT-CATTGGGAGCTGAAATTGTACTTGGTGCAGACCA
131 AAAAAAAAAATTTTTGCATTGGGAGCTAAAATTGTACTTGGTGCAGACCA
*
71985638 TGCCAGCCATTAGTGTCCCAAAGAAAAAAAATTACATTGGGAGGCAAAAAAAAAAGTTGGTGTCG
1 TGCCAGCCATTAGTGTCCCAAAGAAAAAAAATTACATTGGGAGGCAAAAAAAAAACTTGGTGTCG
*
71985703 GCCATCACATGCCCAGCACCTAATTTTTTTTTTAAAAATTTAACTGGTGATGGCCATCAGTGTTC
66 GCCATCACATGCCCAACACCTAATTTTTTTTTTAAAAATTTAACTGGTGATGGCCATCAGTGTTC
*
71985768 AAAAAAAAAATTTTTGCATTGTGAGCTAAAATTGTACTTGGTGC
131 AAAAAAAAAATTTTTGCATTGGGAGCTAAAATTGTACTTGGTGC
71985812 TGGCCATTAC
Statistics
Matches: 163, Mismatches: 8, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
177 124 0.76
178 9 0.06
179 4 0.02
180 26 0.16
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (180 bp):
TGCCAGCCATTAGTGTCCCAAAGAAAAAAAATTACATTGGGAGGCAAAAAAAAAACTTGGTGTCG
GCCATCACATGCCCAACACCTAATTTTTTTTTTAAAAATTTAACTGGTGATGGCCATCAGTGTTC
AAAAAAAAAATTTTTGCATTGGGAGCTAAAATTGTACTTGGTGCAGACCA
Found at i:71986065 original size:111 final size:108
Alignment explanation
Indices: 71985704--71986067 Score: 297
Period size: 110 Copynumber: 3.3 Consensus size: 108
71985694 TTGGTGTCGG
* * * *
71985704 CCATCACATGCCCAGCACCTAATTTTTTTTTTAAAAATTTAACTGGTGATGGCCATCAGTGTTCA
1 CCATTACATGGCCAGCACC-AATTTTTTTTTT--AAATTTAACTGGTGATGACCATCAGTGTCCA
** * * * ** *
71985769 AAAAAAAAATTTTTGCATTGTGA-GCTAAAATTGTACTTGGTGCTGG
63 AAAAAAAAA-TAATGCATTGGGACACGAAAAAAGTACTTGGTGCTGA
* * ** * *
71985815 CCATTACATGGCCTGCACCCAATTTTTTTTTTAATTTTAACTGGT-ACCAAGCATCAGTGTTCTA
1 CCATTACATGGCCAGCA-CCAATTTTTTTTTTAAATTTAACTGGTGA-TGACCATCAGTG-TCCA
* * * * *
71985879 AAAAAAAAAGAAAGCATTCGGACACGAAAAAAGTTCTTGGTGC-CA
63 AAAAAAAAATAATGCATTGGGACACGAAAAAAGTACTTGGTGCTGA
* * * * *
71985924 GCAATTACATGGCCAACACCATTTTGTTTTTTTAAATTTAACTGGTGTTGACCATTAGTGTACCA
1 -CCATTACATGGCCAGCACCAATTT-TTTTTTTAAATTTAACTGGTGATGACCATCAGTGT-CCA
*
71985989 AAGTAAAAAAA-AATGCATTGGGACACGAAAAAAGTACTTGTTGCTGA
63 AA--AAAAAAATAATGCATTGGGACACGAAAAAAGTACTTGGTGCTGA
* *
71986036 CCATCTA-TTGGCCAGCACCAAATTTTTTTTTA
1 CCAT-TACATGGCCAGCACCAATTTTTTTTTTA
71986068 CATCTCTGGT
Statistics
Matches: 197, Mismatches: 44, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
108 1 0.01
109 34 0.17
110 79 0.40
111 71 0.36
112 12 0.06
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (108 bp):
CCATTACATGGCCAGCACCAATTTTTTTTTTAAATTTAACTGGTGATGACCATCAGTGTCCAAAA
AAAAAATAATGCATTGGGACACGAAAAAAGTACTTGGTGCTGA
Found at i:71986692 original size:12 final size:12
Alignment explanation
Indices: 71986677--71986706 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
71986667 ACAACAGAGA
71986677 AAATATGTGAAG
1 AAATATGTGAAG
*
71986689 AAATATGTGCAG
1 AAATATGTGAAG
71986701 AAATAT
1 AAATAT
71986707 TATTGAACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.20, T:0.27
Consensus pattern (12 bp):
AAATATGTGAAG
Found at i:71987856 original size:28 final size:28
Alignment explanation
Indices: 71987783--71987877 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 28
71987773 GAATATGTAA
*
71987783 AACAGTCTGGGCTTTAGCCCTATACAGTATT
1 AACAGTCTGGGCCTTAGCCCTATACAG---T
* *
71987814 AGTATAGTCTAGGCCTTAGCCCTATACAGT
1 A--ACAGTCTGGGCCTTAGCCCTATACAGT
* * *
71987844 AACAGTCTGGGCCTAAGCCCAATATAGT
1 AACAGTCTGGGCCTTAGCCCTATACAGT
*
71987872 ATCAGT
1 AACAGT
71987878 GCAGTGTAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
28 27 0.51
30 2 0.04
31 1 0.02
33 23 0.43
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (28 bp):
AACAGTCTGGGCCTTAGCCCTATACAGT
Found at i:71988066 original size:27 final size:27
Alignment explanation
Indices: 71988036--71988087 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
71988026 TGCCAGAAAC
*
71988036 AGTAAATGTGGCAAAGCCACTAGTATT
1 AGTAAATGTGGCAAAGCCACCAGTATT
* *
71988063 AGTAATTGTGGCATAGCCACCAGTA
1 AGTAAATGTGGCAAAGCCACCAGTA
71988088 CAGTATTTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTATT
Found at i:72006299 original size:20 final size:20
Alignment explanation
Indices: 72006252--72006298 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
72006242 TTTAACTTTA
* *
72006252 TTTTTGTTATTTTGATTGGT
1 TTTTTTTTATTTTGATTAGT
* *
72006272 TTATTTTTATTTTTATTA-T
1 TTTTTTTTATTTTGATTAGT
72006291 TTTTTTTT
1 TTTTTTTT
72006299 TGGGAAAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.13, C:0.00, G:0.09, T:0.79
Consensus pattern (20 bp):
TTTTTTTTATTTTGATTAGT
Found at i:72024582 original size:27 final size:27
Alignment explanation
Indices: 72024552--72024643 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
72024542 ATTACCAAAG
* * *
72024552 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
72024579 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
72024606 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTACAAAATTACCGTTT
*
72024633 TACCATCGATT
1 TACCCTCGATT
72024644 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 55 0.96
28 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:72024597 original size:54 final size:54
Alignment explanation
Indices: 72024525--72024643 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 54
72024515 ATTATTGAAA
* ** * * *
72024525 TACCCTCGACTTGTAAAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAG-TTTACAAAATTACCGTTT
***
72024579 TACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTT
*
72024633 TACCATCGATT
1 TACCCTCGATT
72024644 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 53 0.98
55 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAGTACCCTCAGTTTACAAAATTACCGTTT
Found at i:72026267 original size:29 final size:29
Alignment explanation
Indices: 72026235--72026307 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
72026225 CTTCGAGCTC
*
72026235 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
72026264 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
72026293 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
72026308 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:72028154 original size:27 final size:27
Alignment explanation
Indices: 72028122--72028173 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
72028112 GACTAAAATA
72028122 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
72028149 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
72028174 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:72029031 original size:25 final size:24
Alignment explanation
Indices: 72028997--72029079 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
72028987 AGGAAGTGCT
72028997 AAAAGGGCTCTGCCCCAGTTTATC
1 AAAAGGGCTCTGCCCCAGTTTATC
72029021 GAAAAGGGCTCTGCCCCAGTTTATC
1 -AAAAGGGCTCTGCCCCAGTTTATC
* * *
72029046 AGAAAGGGCTTTGCCCTAG-TTATT
1 A-AAAGGGCTCTGCCCCAGTTTATC
72029070 AAAAGAGGCT
1 AAAAG-GGCT
72029080 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 39 0.74
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTTATC
Found at i:72029273 original size:42 final size:42
Alignment explanation
Indices: 72029214--72029306 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
72029204 TAGTCTCCCC
* ** *
72029214 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
72029256 AAATGGGCTTTCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
72029298 AAATGGGCT
1 AAATGGGCT
72029307 AAAGGGCCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:72029364 original size:31 final size:31
Alignment explanation
Indices: 72029329--72029407 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
72029319 CGTTTACAGT
72029329 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTTGGCCCAGTGATATGATTTATGA
72029360 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTTGGCCCAGTGATATGATTTATGA
*
72029391 AAAGGCTTCGGCCCAGT
1 AAAGGCTTTGGCCCAGT
72029408 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAGTGATATGATTTATGA
Found at i:72031966 original size:40 final size:40
Alignment explanation
Indices: 72031839--72031968 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
72031829 ATGCTGGAAA
* *
72031839 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
72031879 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72031919 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72031959 TTATATCCGG
1 TTATATCCGG
72031969 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72031967 original size:80 final size:79
Alignment explanation
Indices: 72031802--72031968 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
72031792 CAATTGAATG
* *
72031802 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
72031867 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
72031881 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
72031945 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
72031961 ATATCCGG
1 ATATCCGG
72031969 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:72036760 original size:124 final size:124
Alignment explanation
Indices: 72036538--72036762 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
72036528 GAATTATGTG
* * * ** * * *
72036538 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
72036603 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
72036662 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
72036727 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
72036763 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:72036884 original size:40 final size:40
Alignment explanation
Indices: 72036757--72036886 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
72036747 ATGCTGGAAA
* *
72036757 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
72036797 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72036837 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72036877 TTATATCCGG
1 TTATATCCGG
72036887 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72036885 original size:80 final size:80
Alignment explanation
Indices: 72036719--72036886 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
72036709 CAATTGAATG
* * *
72036719 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
72036784 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
72036799 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
72036863 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
72036879 ATATCCGG
1 ATATCCGG
72036887 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:72044810 original size:124 final size:124
Alignment explanation
Indices: 72044588--72044812 Score: 324
Period size: 124 Copynumber: 1.8 Consensus size: 124
72044578 GAATTATGTG
* * * ** * * *
72044588 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
72044653 GCTAAGTCCCGAAGGCAATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACAATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
72044712 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
*
72044777 GCTAAGTCCCGAAGACATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACAATTATGCTGGAAATTATAT
72044813 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
124 87 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACAATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:72044934 original size:40 final size:40
Alignment explanation
Indices: 72044807--72044934 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
72044797 ATGCTGGAAA
*
72044807 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGC-TAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGG
* * **
72044847 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-ATGTGG
*
72044887 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
72044927 TTATATCC
1 TTATATCC
72044935 AGTTGTATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
39 4 0.05
40 69 0.95
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
Found at i:72065067 original size:24 final size:24
Alignment explanation
Indices: 72065040--72065087 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
72065030 TTTGAAGATG
72065040 ATACCCAATATTGCTTCTTCCTTA
1 ATACCCAATATTGCTTCTTCCTTA
*
72065064 ATACCCAATATTGTTTCTTCCTTA
1 ATACCCAATATTGCTTCTTCCTTA
72065088 CTCTGCATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.04, T:0.44
Consensus pattern (24 bp):
ATACCCAATATTGCTTCTTCCTTA
Found at i:72070329 original size:51 final size:50
Alignment explanation
Indices: 72070206--72070354 Score: 192
Period size: 49 Copynumber: 2.9 Consensus size: 50
72070196 TATTGTGAGG
* ** *
72070206 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAA-TTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTGA
* * *
72070255 TCGCATGTGTAGTACTAAGTGCAGGCAACTATGTGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTT-GA
72070306 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAGTACCCGATAAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA--TGT-GTACCCGATAAC
72070355 CATTTTAAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
49 39 0.46
50 2 0.02
51 29 0.34
53 3 0.04
54 12 0.14
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTGA
Found at i:72072607 original size:21 final size:22
Alignment explanation
Indices: 72072581--72072641 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
72072571 GTTTTAAGAA
*
72072581 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
72072602 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
72072624 GTT-TTTAAATGATTTATT
1 -TTGTTTTAAT-ATTTATT
72072642 ATATTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 10 0.30
22 15 0.45
23 8 0.24
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Done.