Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 245 of 345
Found at i:72072623 original size:22 final size:21
Alignment explanation
Indices: 72072581--72072663 Score: 68
Period size: 21 Copynumber: 4.1 Consensus size: 21
72072571 GTTTTAAGAA
*
72072581 TTGTTTTAGTATTATTTTTAT
1 TTGTTTTAATATTATTTTTAT
*
72072602 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATA-TTATTTTTAT
* *
72072624 GT-TTTTAA-ATGATTTATTAT
1 TTGTTTTAATATTATTT-TTAT
*
72072644 AT-TTTTAA-ATT-TTTTTAT
1 TTGTTTTAATATTATTTTTAT
72072662 TT
1 TT
72072664 AATGAAATAA
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
18 5 0.10
19 7 0.13
20 14 0.27
21 16 0.31
22 10 0.19
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (21 bp):
TTGTTTTAATATTATTTTTAT
Found at i:72082296 original size:40 final size:40
Alignment explanation
Indices: 72082237--72082444 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
72082227 CAATTGAATG
* * * *
72082237 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
72082277 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72082317 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72082357 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72082397 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72082437 ATATCCGG
1 ATATCCGG
72082445 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72082375 original size:80 final size:80
Alignment explanation
Indices: 72082238--72082444 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
72082228 AATTGAATGA
* * ** * * *
72082238 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
72082303 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
72082316 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
72082381 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
72082398 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72082445 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:72086260 original size:28 final size:28
Alignment explanation
Indices: 72086199--72086296 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
72086189 TCACAAATTG
** * *
72086199 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
72086228 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
72086256 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
72086284 GCACTAAGTGTGC
1 GCACTAAGTGTGC
72086297 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:72099032 original size:40 final size:40
Alignment explanation
Indices: 72098960--72099166 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
72098950 CAATTGAATG
* * * * *
72098960 ATATCCGGGCTAAG-TCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * *
72098999 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
72099039 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
72099079 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * **
72099119 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
72099159 ATATCCGG
1 ATATCCGG
72099167 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 18 0.13
40 120 0.86
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:72099097 original size:80 final size:80
Alignment explanation
Indices: 72098961--72099166 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
72098951 AATTGAATGA
* * ** * ** * *
72098961 TATCCGGGCTAAG-TCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
72099025 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
72099038 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
* *
72099103 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
72099120 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
72099167 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
77 1 0.01
79 12 0.11
80 92 0.85
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:72103230 original size:28 final size:28
Alignment explanation
Indices: 72103198--72103254 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
72103188 TTTAACCATC
72103198 AACAATTATTCAAAATCCATCATCAACT
1 AACAATTATTCAAAATCCATCATCAACT
*
72103226 AACAATTATTCAAAATCCATCGTCAACT
1 AACAATTATTCAAAATCCATCATCAACT
72103254 A
1 A
72103255 TCAAATTACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.25, G:0.02, T:0.28
Consensus pattern (28 bp):
AACAATTATTCAAAATCCATCATCAACT
Found at i:72112524 original size:17 final size:19
Alignment explanation
Indices: 72112488--72112524 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
72112478 AAGCCCCATA
72112488 ACATGGCCCATGTAGGCCC
1 ACATGGCCCATGTAGGCCC
*
72112507 ACAT-GCCCGTGT-GGCCC
1 ACATGGCCCATGTAGGCCC
72112524 A
1 A
72112525 TAAAACCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.19, C:0.38, G:0.27, T:0.16
Consensus pattern (19 bp):
ACATGGCCCATGTAGGCCC
Found at i:72116530 original size:46 final size:47
Alignment explanation
Indices: 72116438--72116570 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 47
72116428 ATAATCTCAC
* * *
72116438 CCATAATTAACTCAGAACACAACTCAACGAGCTCGGGTG-TTCGCAT
1 CCATAATGAACTCAGAACACAACTCAACGAGTTCGGATGCTTCGCAT
* *
72116484 CCATAATGAACTCGGAACACAACTCAACGAGTTCCGATGCTT-GCAT
1 CCATAATGAACTCAGAACACAACTCAACGAGTTCGGATGCTTCGCAT
* * * *
72116530 CTATAAGTGAACTCAAAACGCAACTCACCGAGTTCGGATGC
1 CCATAA-TGAACTCAGAACACAACTCAACGAGTTCGGATGC
72116571 CTCATAATTC
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
46 43 0.58
47 31 0.42
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (47 bp):
CCATAATGAACTCAGAACACAACTCAACGAGTTCGGATGCTTCGCAT
Found at i:72118214 original size:32 final size:32
Alignment explanation
Indices: 72118178--72118242 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
72118168 TAAATTGATG
72118178 ATTAAATTCATTTATATAGATTCAGATAACAC
1 ATTAAATTCATTTATATAGATTCAGATAACAC
* *
72118210 ATTAAATTCATTTATATTGATTTAGATAACAC
1 ATTAAATTCATTTATATAGATTCAGATAACAC
72118242 A
1 A
72118243 AATTTAAGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (32 bp):
ATTAAATTCATTTATATAGATTCAGATAACAC
Found at i:72123335 original size:25 final size:23
Alignment explanation
Indices: 72123267--72123335 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 23
72123257 ATATAAGTTT
72123267 TAAA-TAATTTTTAAAAATTAATA
1 TAAACTAA-TTTTAAAAATTAATA
* * *
72123290 TAAATTAATTCTAAAATTTAATA
1 TAAACTAATTTTAAAAATTAATA
*
72123313 TGAACCTATATTTTAAAAATTAA
1 T-AAACTA-ATTTTAAAAATTAA
72123336 AATTACATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
23 18 0.49
24 7 0.19
25 12 0.32
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (23 bp):
TAAACTAATTTTAAAAATTAATA
Found at i:72126640 original size:21 final size:21
Alignment explanation
Indices: 72126594--72126639 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
72126584 TATTTTTATT
72126594 TTTTAGAGTTTAAATTTTAAA
1 TTTTAGAGTTTAAATTTTAAA
*
72126615 TTTTAGAGTTTAGGATTTTAAA
1 TTTTAGAGTTTA-AATTTTAAA
72126637 TTT
1 TTT
72126640 AAGCTCGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (21 bp):
TTTTAGAGTTTAAATTTTAAA
Found at i:72129166 original size:48 final size:48
Alignment explanation
Indices: 72129031--72129308 Score: 229
Period size: 48 Copynumber: 5.8 Consensus size: 48
72129021 TCACACATCA
* * * *
72129031 ATGCCAATAGCCCAGCTATGGTCTTACAC-GAAGTCTCATGA-CGGTGCCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGGGA-TCTCAT-ATCGATGCCG
* * * * * * *
72129080 ATGCCATGTCCCATACATGATCTTATAGGGGA-CATCATATCGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATC-TCATATCGATGCCG
* * * *
72129128 ATGCCATATCCCAGATATGGCCTTACATGGGATCTCATATTGATGTCG
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGCCG
* * ** * * * *
72129176 ATGCCATGTCCCGGACGTGGTCTTATACGGGATCTCTTATCAATGTCG
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGCCG
* * *
72129224 ATGTCATATCCCAGATATAGTCTTACACGGGATCTCATCTCGATGCCG
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGCCG
* * * *
72129272 ATGCCATATGCAAAATATGGTCTTATACGGGATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCTCA
72129309 ATACTCACAT
Statistics
Matches: 177, Mismatches: 48, Indels: 9
0.76 0.21 0.04
Matches are distributed among these distances:
47 2 0.01
48 167 0.94
49 8 0.05
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGATGCCG
Found at i:72129180 original size:96 final size:96
Alignment explanation
Indices: 72129075--72129308 Score: 254
Period size: 96 Copynumber: 2.4 Consensus size: 96
72129065 CTCATGACGG
* * *
72129075 TGCCGATGCCATGTCCCATACATGATCTTATAGGGGA-CATCATATCGATGCCAATGCCATATCC
1 TGCCGATGCCATGTCCCAGACATGATCTTATACGGGATC-TCATATCAATGCCAATGCCATATCC
* * *
72129139 CAGATATGGCCTTACATGGGATCTCATATTGA
65 CAGATATAGCCTTACACGGGATCTCATATCGA
* * * * * * * *
72129171 TGTCGATGCCATGTCCCGGACGTGGTCTTATACGGGATCTCTTATCAATGTCGATGTCATATCCC
1 TGCCGATGCCATGTCCCAGACATGATCTTATACGGGATCTCATATCAATGCCAATGCCATATCCC
* *
72129236 AGATATAGTCTTACACGGGATCTCATCTCGA
66 AGATATAGCCTTACACGGGATCTCATATCGA
* * * * * *
72129267 TGCCGATGCCATATGCAAAATATGGTCTTATACGGGATCTCA
1 TGCCGATGCCATGTCCCAGACATGATCTTATACGGGATCTCA
72129309 ATACTCACAT
Statistics
Matches: 112, Mismatches: 25, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
96 111 0.99
97 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.29
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGATCTTATACGGGATCTCATATCAATGCCAATGCCATATCCC
AGATATAGCCTTACACGGGATCTCATATCGA
Found at i:72135870 original size:95 final size:96
Alignment explanation
Indices: 72135765--72135946 Score: 260
Period size: 95 Copynumber: 1.9 Consensus size: 96
72135755 TAACGGTGCC
* *
72135765 GATGCCATGTCCCAGACTTGGTCTTATACGGGGCCTCATATCGATGCCAAT-TCCATATCCCAGA
1 GATGCCATGTCCCAGACGTGGTCTTATACGGGACCTCATATCGATGCCAATGT-CATATCCCAGA
*
72135829 TATGGTTT-ACATGGGATCTCATAGTAATGTT
65 TATGGTTTGACACGGGATCTCATAGTAATGTT
* * * ** *
72135860 GATGCCATGTCCTAGACGTGGTCTTATACGGGATCTCTTATCGATGCTGATGTCGTATCCCAGAT
1 GATGCCATGTCCCAGACGTGGTCTTATACGGGACCTCATATCGATGCCAATGTCATATCCCAGAT
72135925 ATGGTTTGACACGGGATCTCAT
66 ATGGTTTGACACGGGATCTCAT
72135947 CTTGATGCCG
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
95 62 0.82
96 14 0.18
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (96 bp):
GATGCCATGTCCCAGACGTGGTCTTATACGGGACCTCATATCGATGCCAATGTCATATCCCAGAT
ATGGTTTGACACGGGATCTCATAGTAATGTT
Found at i:72135911 original size:48 final size:48
Alignment explanation
Indices: 72135750--72135993 Score: 179
Period size: 48 Copynumber: 5.1 Consensus size: 48
72135740 TTGCACGAAG
* * * * *
72135750 TCTCATAACGGTGCCGATGCCATGTCCCAGACTTGGTCTTATACGGGG
1 TCTCATATCGATGCTGATGCCATGTCCCAGACATGGTCTTATACGGGA
* ** * * * * *
72135798 CCTCATATCGATGCCAATTCCATATCCCAGATATGGT-TTACATGGGA
1 TCTCATATCGATGCTGATGCCATGTCCCAGACATGGTCTTATACGGGA
* * * *
72135845 TCTCATAGT-AATGTTGATGCCATGTCCTAGACGTGGTCTTATACGGGA
1 TCTCATA-TCGATGCTGATGCCATGTCCCAGACATGGTCTTATACGGGA
* * * * * *
72135893 TCTCTTATCGATGCTGATGTCGTATCCCAGATATGGT-TTGACACGGGA
1 TCTCATATCGATGCTGATGCCATGTCCCAGACATGGTCTT-ATACGGGA
* * * * ** *
72135941 TCTCATCTTGATGCCGATGCTATACCCCAGATATGGTCTTATACGGGA
1 TCTCATATCGATGCTGATGCCATGTCCCAGACATGGTCTTATACGGGA
72135989 TCTCA
1 TCTCA
72135994 ATACTCACAT
Statistics
Matches: 149, Mismatches: 42, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
47 35 0.23
48 112 0.75
49 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (48 bp):
TCTCATATCGATGCTGATGCCATGTCCCAGACATGGTCTTATACGGGA
Found at i:72138429 original size:50 final size:48
Alignment explanation
Indices: 72138313--72138488 Score: 180
Period size: 48 Copynumber: 3.6 Consensus size: 48
72138303 GATGCTGACA
* * * * * *
72138313 CCATGTCCCAGACATGGTCTTACATTGGCTCATCTATCAAGT--CGATG
1 CCATGTCCTAGACATGGTCTTACACTGACACCTCCAT-AAGTACCGATG
* * * *
72138360 CCATGTCCCAGACATGGTCTTACACT-AGC-TCTCACATATCCGTGCCGATG
1 CCATGTCCTAGACATGGTCTTACACTGA-CACCTC-CATA--AGTACCGATG
72138410 CCATGTCCTAGACATGGTCTTACACTGACACCTCCATAAGTACCGATG
1 CCATGTCCTAGACATGGTCTTACACTGACACCTCCATAAGTACCGATG
*
72138458 CCATGTCCTAAACATGGTCTTACACTGACAC
1 CCATGTCCTAGACATGGTCTTACACTGACAC
72138489 ATCTCGTAGC
Statistics
Matches: 110, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
46 3 0.03
47 28 0.25
48 40 0.36
50 35 0.32
51 4 0.04
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (48 bp):
CCATGTCCTAGACATGGTCTTACACTGACACCTCCATAAGTACCGATG
Found at i:72138595 original size:46 final size:45
Alignment explanation
Indices: 72138505--72138670 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 45
72138495 TAGCCAATGT
* ** * *
72138505 ATGTCCCAGACATGTCTTACACTGGCTTACTTCTCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTT-CTTCTTAATGTCGATGC
* *
72138551 ATGTCTCAGACATGTCTTACACTAGCTTTTGTCTTAATGTCGATGCC
1 ATGTCCCAGACATGTCTTACACTAGCTTCT-TCTTAATGTCGATG-C
* * * *
72138598 ATGTCCCAGACATTTTCTTACGCT-GCCTC-TCATAATGTGGTCGATGC
1 ATGTCCCAGACA-TGTCTTACACTAGCTTCTTCTTAA--T-GTCGATGC
72138645 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
72138671 ACACAAATAA
Statistics
Matches: 98, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
45 6 0.06
46 45 0.46
47 31 0.32
48 16 0.16
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.33
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTAGCTTCTTCTTAATGTCGATGC
Found at i:72146232 original size:50 final size:48
Alignment explanation
Indices: 72146164--72146476 Score: 167
Period size: 48 Copynumber: 6.7 Consensus size: 48
72146154 TGAGGTTGAC
* * * * *
72146164 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCACTTATCCGTGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCAC-CAC-TATACATGCCGAT
* * * * *
72146214 GCCATGTCCCAGATATGGTCTTATACTGGCACCTCTATACATGCCGGT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACCACTATACATGCCGAT
* *
72146262 GCCATGTCCCAGACATGGTCTTACACT-G-A-CAC-ATCTCGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACCACTAT-ACAT-GCCGAT
* * *
72146308 G-CATGTCCTAGACAT-GTCTTACACTAGCTTA-CA-TCT-CGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGC--ACCACTATAC-ATGCCGAT
* * * *
72146354 G-CATGCCCCAG-CAT-GTCTTACACTAGCTCTC-GTCT-CAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCAC-CACTATAC-ATGCCGAT
* * ** *
72146399 TCCATGTCCCAGACATGGTCTTACGCTAGCTTTCA-TA-ATATGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGC-ACCACTATACAT-GCCGAT
* *
72146447 G-CATGTTCTAGACAT-GTCTTACACTAGCAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCAC
72146477 ACAAATAACC
Statistics
Matches: 208, Mismatches: 37, Indels: 41
0.73 0.13 0.14
Matches are distributed among these distances:
44 12 0.06
45 46 0.22
46 44 0.21
47 18 0.09
48 58 0.28
49 3 0.01
50 27 0.13
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCACCACTATACATGCCGAT
Found at i:72146353 original size:46 final size:46
Alignment explanation
Indices: 72146264--72146474 Score: 195
Period size: 46 Copynumber: 4.6 Consensus size: 46
72146254 ATGCCGGTGC
72146264 CATGTCCCAGACATGGTCTTACACT-GAC--ACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTTACATCTCG-AGGCCGATG
*
72146309 CATGTCCTAGACATGTCTTACACTAGCTTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCCGATG
* * * * *
72146355 CATGCCCCAG-CATGTCTTACACTAGCTCT-CGTCTCAATGCCGATTC
1 CATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGAGGCCGA-TG
* * *
72146401 CATGTCCCAGACATGGTCTTACGCTAGCTTTCATAAT--ATGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTACAT-CTCGA-GGCCGATG
* *
72146448 CATGTTCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
72146475 ACACAAATAA
Statistics
Matches: 139, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.08
45 43 0.31
46 46 0.33
47 18 0.13
48 20 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCCGATG
Found at i:72146428 original size:48 final size:48
Alignment explanation
Indices: 72146165--72146434 Score: 184
Period size: 48 Copynumber: 5.7 Consensus size: 48
72146155 GAGGTTGACG
* * ** * *
72146165 CCATGTCCTAGACATGGTCTTACACTAGCTCTCACTTATCCGTGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TCTCAATGCCGATT
* * * * * * *
72146215 CCATGTCCCAGATATGGTCTTATACTGGCAC-C-TCTATACATGCCGGTG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-CA-ATGCCGATT
* * *
72146263 CCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC-GTAGCCGA-T
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAT-GCCGATT
* * * *
72146308 GCATGTCCTAGACAT-GTCTTACACTAGCT-TACATCTCGAGGCCGA-T
1 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CATCTCAATGCCGATT
* * *
72146354 GCATGCCCCAG-CAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATT
* *
72146400 CCATGTCCCAGACATGGTCTTACGCTAGCTTTCAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
72146435 AATATGGCCG
Statistics
Matches: 174, Mismatches: 33, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.06
45 43 0.25
46 40 0.23
47 5 0.03
48 49 0.28
49 1 0.01
50 26 0.15
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATT
Found at i:72146554 original size:26 final size:26
Alignment explanation
Indices: 72146518--72146570 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
72146508 CTGATTTATT
72146518 TCCTAAGGTTCAAACGGGAGTTCTAC
1 TCCTAAGGTTCAAACGGGAGTTCTAC
72146544 TCCTAAGGTTCAAACGGGAGTTCTAC
1 TCCTAAGGTTCAAACGGGAGTTCTAC
72146570 T
1 T
72146571 ATCTCAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
TCCTAAGGTTCAAACGGGAGTTCTAC
Found at i:72148843 original size:30 final size:30
Alignment explanation
Indices: 72148809--72148870 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
72148799 TATATATGAA
72148809 ATAAATTTTAAATATTTTTAAGTAATTAAT
1 ATAAATTTTAAATATTTTTAAGTAATTAAT
* *
72148839 ATAAATTTTATATATTTTTACGTAATTAAT
1 ATAAATTTTAAATATTTTTAAGTAATTAAT
72148869 AT
1 AT
72148871 CTTAAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (30 bp):
ATAAATTTTAAATATTTTTAAGTAATTAAT
Found at i:72149636 original size:16 final size:16
Alignment explanation
Indices: 72149615--72149649 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
72149605 TTCTACTGCT
72149615 ACTATTTTTTCATGCC
1 ACTATTTTTTCATGCC
72149631 ACTATTTTTTCATGCC
1 ACTATTTTTTCATGCC
72149647 ACT
1 ACT
72149650 TTCATCTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.20, C:0.26, G:0.06, T:0.49
Consensus pattern (16 bp):
ACTATTTTTTCATGCC
Found at i:72151522 original size:21 final size:21
Alignment explanation
Indices: 72151503--72151543 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
72151493 AAAACATTAT
72151503 TAAAATTTATAAATGTATTAAG
1 TAAAATTTA-AAATGTATTAAG
*
72151525 TAGAATTTAAAATGT-TTAA
1 TAAAATTTAAAATGTATTAA
72151544 AAATAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (21 bp):
TAAAATTTAAAATGTATTAAG
Found at i:72152299 original size:20 final size:21
Alignment explanation
Indices: 72152271--72152324 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
72152261 TTTTTATTAA
*
72152271 TTTTT-AATTTTATTTGA-AC
1 TTTTTAAATTTTATTTAATAC
*
72152290 TTTTTAAATTTTATTTAATAT
1 TTTTTAAATTTTATTTAATAC
72152311 TTTTATAAATTTTA
1 TTTT-TAAATTTTA
72152325 ATAATTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 5 0.17
20 11 0.37
21 5 0.17
22 9 0.30
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTTAAATTTTATTTAATAC
Found at i:72152313 original size:19 final size:17
Alignment explanation
Indices: 72152262--72152313 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 17
72152252 TTTCAATGGT
72152262 TTTTA-TTAATTTTTAA
1 TTTTATTTAATTTTTAA
72152278 TTTTATTTGAACTTTTTAAA
1 TTTTATTT-AA-TTTTT-AA
72152298 TTTTATTTAATATTTT
1 TTTTATTTAAT-TTTT
72152314 TATAAATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
18 3 0.10
19 11 0.35
20 10 0.32
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTTATTTAATTTTTAA
Found at i:72152331 original size:19 final size:18
Alignment explanation
Indices: 72152302--72152358 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
72152292 TTTAAATTTT
72152302 ATTTAAT-ATTTTTATAAA
1 ATTTAATAATTTTT-TAAA
*
72152320 TTTTAATAATTTATTTAAAA
1 ATTTAATAATTT-TTT-AAA
72152340 ATTT-ATAATTTTTTAAA
1 ATTTAATAATTTTTTAAA
72152357 AT
1 AT
72152359 ATTTTTTAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
17 5 0.15
18 9 0.26
19 12 0.35
20 8 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTAATAATTTTTTAAA
Found at i:72152354 original size:30 final size:29
Alignment explanation
Indices: 72152290--72152367 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
72152280 TTATTTGAAC
* **
72152290 TTTTTAAATTTTATTTAATATTTTTATAA
1 TTTTTAAAATTTATTTAATAAATTTATAA
*
72152319 ATTTTAATAATTTATTTAA-AAATTTATAA
1 TTTTTAA-AATTTATTTAATAAATTTATAA
*
72152348 TTTTTTAAAATATTTTTTAA
1 -TTTTTAAAAT-TTATTTAA
72152368 CTTTAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 17 0.43
30 23 0.57
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (29 bp):
TTTTTAAAATTTATTTAATAAATTTATAA
Found at i:72152362 original size:19 final size:20
Alignment explanation
Indices: 72152301--72152362 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 20
72152291 TTTTAAATTT
72152301 TATTTAAT-A-TTTTTATAAA
1 TATTTAATAATTTTTTA-AAA
72152320 T-TTTAATAATTTATTTAAAA
1 TATTTAATAATTT-TTTAAAA
72152340 -ATTT-ATAATTTTTTAAAA
1 TATTTAATAATTTTTTAAAA
72152358 TATTT
1 TATTT
72152363 TTTAACTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
18 13 0.34
19 13 0.34
20 8 0.21
21 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTTAATAATTTTTTAAAA
Found at i:72154696 original size:31 final size:31
Alignment explanation
Indices: 72154661--72154732 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
72154651 AAGTTTTTCC
*
72154661 ATGAACAT-TTTAGTATGGTTTTTTAAGCTTA
1 ATGAA-ATATTTAGTATGGTTTTTGAAGCTTA
*
72154692 ATGAAATATTTAGTATGGTTTTTGAAGTTTA
1 ATGAAATATTTAGTATGGTTTTTGAAGCTTA
72154723 ATGAAATATT
1 ATGAAATATT
72154733 ATTAGTTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (31 bp):
ATGAAATATTTAGTATGGTTTTTGAAGCTTA
Found at i:72156034 original size:20 final size:21
Alignment explanation
Indices: 72155998--72156036 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
72155988 GTGTAAATGT
72155998 AGTAATATAATTGTTATTTTA
1 AGTAATATAATTGTTATTTTA
*
72156019 AGTAATTTAA-TGTTATTT
1 AGTAATATAATTGTTATTT
72156037 ATATGATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (21 bp):
AGTAATATAATTGTTATTTTA
Found at i:72159840 original size:21 final size:23
Alignment explanation
Indices: 72159816--72159857 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
72159806 TCATTTAGGG
72159816 CATTTT-ACAATTTAG-CCCTCA
1 CATTTTGACAATTTAGTCCCTCA
*
72159837 CATTTTGACACTTTAGTCCCT
1 CATTTTGACAATTTAGTCCCT
72159858 AATTCACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 8 0.44
23 4 0.22
ACGTcount: A:0.24, C:0.29, G:0.07, T:0.40
Consensus pattern (23 bp):
CATTTTGACAATTTAGTCCCTCA
Found at i:72166593 original size:31 final size:31
Alignment explanation
Indices: 72166555--72166618 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
72166545 CCTTTTCATA
72166555 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
72166586 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
72166617 TT
1 TT
72166619 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:72166861 original size:24 final size:24
Alignment explanation
Indices: 72166810--72166952 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
72166800 GCTTTATCAT
*
72166810 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
72166835 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
72166859 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
72166882 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72166906 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
72166930 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72166953 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72166889 original size:47 final size:48
Alignment explanation
Indices: 72166810--72166951 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
72166800 GCTTTATCAT
* *
72166810 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
72166859 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
72166906 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
72166952 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:72166910 original size:71 final size:72
Alignment explanation
Indices: 72166809--72166952 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
72166799 TGCTTTATCA
*
72166809 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
72166874 GCCCTTT
66 GCCCTTT
* * **
72166881 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
72166944 AGCCCTTT
65 AGCCCTTT
72166952 T
1 T
72166953 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:72167027 original size:20 final size:20
Alignment explanation
Indices: 72167002--72167062 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
72166992 TTATGATTAC
72167002 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72167022 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
72167042 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
72167062 A
1 A
72167063 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72167137 original size:25 final size:25
Alignment explanation
Indices: 72167105--72167152 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72167095 ATACATAAAC
* * *
72167105 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72167130 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72167153 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72173623 original size:34 final size:34
Alignment explanation
Indices: 72173578--72173644 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
72173568 TAATCTGACA
*
72173578 CTTTTTCCTTTCCCCAATCTAAATCCGTACGATG
1 CTTTTTCCTTTCCCCAATCTAAATCAGTACGATG
* **
72173612 CTTTTTTCTTTCCCTGATCTAAATCAGTACGAT
1 CTTTTTCCTTTCCCCAATCTAAATCAGTACGAT
72173645 CAAATAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (34 bp):
CTTTTTCCTTTCCCCAATCTAAATCAGTACGATG
Found at i:72179918 original size:40 final size:40
Alignment explanation
Indices: 72179863--72180018 Score: 179
Period size: 40 Copynumber: 3.9 Consensus size: 40
72179853 TGAAACCCGA
* *
72179863 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
* *
72179903 GCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCCGG
* * ** *
72179943 GCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
* * * *
72179983 GTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
72180019 TCGGTTAGAT
Statistics
Matches: 95, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 92 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
Found at i:72180016 original size:80 final size:80
Alignment explanation
Indices: 72179863--72180018 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 80
72179853 TGAAACCCGA
* * ** *
72179863 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCG
1 GCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCGTGCG
*
72179928 AGTTGTTATATCCGG
66 AGTGGTTATATCCGG
* * *
72179943 GCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-GTGC
1 GCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTCGTGC
**
72180007 TTGTGGTTATAT
65 GAGTGGTTATAT
72180019 TCGGTTAGAT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 61 0.95
81 3 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
GCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCGTGCG
AGTGGTTATATCCGG
Found at i:72189127 original size:18 final size:18
Alignment explanation
Indices: 72189104--72189147 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
72189094 GGTATTTGGT
72189104 GTTTTGGTATGGTAATTG
1 GTTTTGGTATGGTAATTG
72189122 GTTTTGGTATGGTAATTG
1 GTTTTGGTATGGTAATTG
72189140 GTTTTGGT
1 GTTTTGGT
72189148 GTCTTAGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.14, C:0.00, G:0.34, T:0.52
Consensus pattern (18 bp):
GTTTTGGTATGGTAATTG
Found at i:72191771 original size:39 final size:40
Alignment explanation
Indices: 72191671--72191817 Score: 158
Period size: 40 Copynumber: 3.7 Consensus size: 40
72191661 TCGAATGATG
* *
72191671 TCCGGACTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * *
72191711 TCCGGACTAGGAT-CCGAAGGCATTTGTGCGAGTTAATAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
*
72191751 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCAAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* ** *
72191789 CCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC
72191818 GAGTCGCTAT
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
38 24 0.27
39 19 0.21
40 39 0.43
41 8 0.09
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:72191818 original size:78 final size:80
Alignment explanation
Indices: 72191671--72191821 Score: 191
Period size: 78 Copynumber: 1.9 Consensus size: 80
72191661 TCGAATGATG
* * * * *
72191671 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
72191736 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* * **
72191751 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
72191813 CGTGCGAGT
65 CGTGCGAGT
72191822 CGCTATAACC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.57
79 15 0.25
80 10 0.16
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:72201989 original size:40 final size:40
Alignment explanation
Indices: 72201945--72202150 Score: 161
Period size: 40 Copynumber: 5.2 Consensus size: 40
72201935 TCAACGTTTA
**
72201945 ACCGGATATAGCT-ACTCATTCAAATGCCTTCGGGACATAG
1 ACCGGATATAG-TAACTCACACAAATGCCTTCGGGACATAG
* * *
72201985 ACCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-
1 ACCGGATATAGTAACTCACACAAATGCCTTCGGGACATAG
* * *
72202024 ACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAG
1 A-CCGGATATAGTAACTCACACAAATGCCTTCGGGA-CATAG
* * * * * *
72202065 TCCGGATTTAGTAACTCGCACGAATACCTTC-GGATCTTAG
1 ACCGGATATAGTAACTCACACAAATGCCTTCGGGA-CATAG
* * * *
72202105 TCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAG
1 ACCGGATATAGTAACTCA-CACAAATGCCTTCGGGACATAG
*
72202145 CCCGGA
1 ACCGGA
72202151 CATCATTCGA
Statistics
Matches: 143, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
39 5 0.03
40 130 0.91
41 8 0.06
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
ACCGGATATAGTAACTCACACAAATGCCTTCGGGACATAG
Found at i:72202077 original size:80 final size:82
Alignment explanation
Indices: 72201965--72202150 Score: 222
Period size: 80 Copynumber: 2.3 Consensus size: 82
72201955 GCTACTCATT
* *
72201965 CAAATGCCTTCGGGACATAGACCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGACCGGATTATAGTAACTCGCACAAATACCTTC-GGATCTTAACCC
* *
72202028 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
72202045 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACGAATACCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGA-CTTAGACCGGATTATAGTAACTCGCACAAATACCTTCGGATCTTAACCC
*
72202108 GGATATAGTCACTTAGCA
65 GGATATAGTAACTTAGCA
*
72202126 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGACCGGA
72202151 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
79 6 0.07
80 72 0.79
81 13 0.14
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGACCGGATTATAGTAACTCGCACAAATACCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:72211274 original size:18 final size:18
Alignment explanation
Indices: 72211251--72211294 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
72211241 AATAGTTTCA
72211251 TTAAAAATATGAATT-ATT
1 TTAAAAATAT-AATTAATT
*
72211269 TT-AAAATATATTTAATT
1 TTAAAAATATAATTAATT
72211286 TTAAAAATA
1 TTAAAAATA
72211295 GGAAGAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 3 0.13
17 12 0.52
18 8 0.35
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
TTAAAAATATAATTAATT
Found at i:72215556 original size:55 final size:55
Alignment explanation
Indices: 72215430--72215558 Score: 159
Period size: 55 Copynumber: 2.3 Consensus size: 55
72215420 ATTTCCTTAG
* *
72215430 CCCGTGTGCAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTG
1 CCCGTGTACAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTA
* *** * * * * *
72215485 CCCATGTACGGTACTGACTTTAAGACACGGCCATGGTACACGCTCGTGTGGCCTA
1 CCCGTGTACAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTA
72215540 CCCGTGTACAACACTGACT
1 CCCGTGTACAACACTGACT
72215559 AAAAGTTTAA
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.22, C:0.34, G:0.23, T:0.20
Consensus pattern (55 bp):
CCCGTGTACAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTA
Found at i:72216526 original size:47 final size:47
Alignment explanation
Indices: 72216319--72216634 Score: 222
Period size: 47 Copynumber: 6.7 Consensus size: 47
72216309 GATAAGTTGC
*
72216319 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTAGCATCATCGAGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCATCGAGGT
* * * * * *
72216368 CGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTTGTAT-ATACGTGCT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-AT-CATCAT-CGAGGT
* * * * * **
72216419 -AATGCATGTCCCAGGCATGTCTTACACTAGC-A-CAACTTTTA-GT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGT
**
72216462 CGATGTGTGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGT
* * *
72216509 CGATGCATGTCCGAGACATGTCTTACACTGG-TACTCATC-TCTACG-
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCATCGAGGT
* * ** *
72216554 CTGATTCCATGTCCCAGACATGGTCTTATACTGGC-A-CA-CATAATATGGC
1 C-GA-TGCATGTCCCAGACAT-GTCTTACACTGGCTATCATCAT-CGA-GGT
72216603 CGATGCATGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
72216635 ACACAAGAAA
Statistics
Matches: 210, Mismatches: 40, Indels: 37
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.00
44 27 0.13
45 4 0.02
46 28 0.13
47 66 0.31
48 27 0.13
49 46 0.22
50 5 0.02
51 6 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGT
Found at i:72216607 original size:141 final size:140
Alignment explanation
Indices: 72216317--72216634 Score: 358
Period size: 141 Copynumber: 2.2 Consensus size: 140
72216307 GGGATAAGTT
72216317 GCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTAGCATCATCGAGGTCGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTAGCATCATCGAGGTCGATGCCATGTCCC
* ** * *
72216382 AGACATGGTCTTATACTAGCTCTTGTATATACGTGCTAATGCATGTCCCAGGCATGTCTTACACT
64 AGACATGGTCTTACACTAGCTCTCATATATACGTGC-AATCCATGTCCCAGACATGTCTTACACT
*
72216447 AGCACAACTTTTA
128 AGCACAACTTATA
* ** * *
72216460 GTCGATGTGTGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGTCGATG-CATGTCCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAGCATCATCGAGGTCGATGCCATGTCCCAG
* * * * *
72216524 ACAT-GTCTTACACT-GGTACTCATCTCTACGCTG-ATTCCATGTCCCAGACATGGTCTTATACT
66 ACATGGTCTTACACTAGCT-CTCATATATACG-TGCAATCCATGTCCCAGACAT-GTCTTACACT
* *
72216586 GGCAC-ACATAATATG
128 AGCACAAC-T--TATA
72216601 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
72216635 ACACAAGAAA
Statistics
Matches: 148, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
138 19 0.13
139 31 0.21
140 15 0.10
141 65 0.44
142 12 0.08
143 6 0.04
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAGCATCATCGAGGTCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTCATATATACGTGCAATCCATGTCCCAGACATGTCTTACACTAGC
ACAACTTATA
Found at i:72224873 original size:40 final size:40
Alignment explanation
Indices: 72224828--72224933 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
72224818 ATGAAATATT
72224828 AGCTAAATATGGCACTTAGTGTGCGGTTTG-GTATAACTTC
1 AGCTAAATATGGCACTTAGTGTGCGGTTTGAG-ATAACTTC
* * * **
72224868 GGCTAAATTTGGCACTTAGTGTGCGATTTGAGATTGCTTC
1 AGCTAAATATGGCACTTAGTGTGCGGTTTGAGATAACTTC
** *
72224908 AGCTACGTATAGCACTTAGTGTGCGG
1 AGCTAAATATGGCACTTAGTGTGCGG
72224934 GACATCAAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (40 bp):
AGCTAAATATGGCACTTAGTGTGCGGTTTGAGATAACTTC
Found at i:72241653 original size:11 final size:11
Alignment explanation
Indices: 72241637--72241677 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
72241627 GATATGATAT
72241637 ACATGATATGC
1 ACATGATATGC
72241648 ACATGATATG-
1 ACATGATATGC
*
72241658 -TATGATATGC
1 ACATGATATGC
72241668 ACATGATATG
1 ACATGATATG
72241678 TATGAAATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 8 0.31
11 18 0.69
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:72241655 original size:20 final size:20
Alignment explanation
Indices: 72241630--72241676 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
72241620 TACGTGGGAT
72241630 ATGATATACATGATATGCAC
1 ATGATATACATGATATGCAC
**
72241650 ATGATATGTATGATATGCAC
1 ATGATATACATGATATGCAC
72241670 ATGATAT
1 ATGATAT
72241677 GTATGAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (20 bp):
ATGATATACATGATATGCAC
Found at i:72241677 original size:20 final size:20
Alignment explanation
Indices: 72241639--72241694 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
72241629 TATGATATAC
72241639 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
72241659 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
* *
72241679 ATGAAATGCATATGAT
1 ATGATATGCACATGAT
72241695 GTAATCATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.34
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:72241772 original size:25 final size:25
Alignment explanation
Indices: 72241744--72241881 Score: 158
Period size: 25 Copynumber: 5.4 Consensus size: 25
72241734 GAGGAAGTGC
72241744 AAAAGGGCTATGCCCCAGTTTATTG
1 AAAAGGGCTATGCCCCAGTTTATTG
72241769 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGC-TATGCCCCAGTTTATTG
* *
72241795 AAAAGGGCTTTGCCCCAGTTTA-TC
1 AAAAGGGCTATGCCCCAGTTTATTG
*
72241819 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTATGCCCCAGTTTATTG
*
72241842 AAAAGAGGCTAGGCCTCCAG-TTATATG
1 AAAAG-GGCTATGCC-CCAGTTTAT-TG
72241869 ATAAAGTGGCTAT
1 A-AAAG-GGCTAT
72241882 ACTGCTAGTG
Statistics
Matches: 100, Mismatches: 6, Indels: 11
0.85 0.05 0.09
Matches are distributed among these distances:
23 8 0.08
24 27 0.27
25 29 0.29
26 26 0.26
27 1 0.01
28 9 0.09
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATTG
Found at i:72241786 original size:26 final size:25
Alignment explanation
Indices: 72241744--72241851 Score: 159
Period size: 26 Copynumber: 4.4 Consensus size: 25
72241734 GAGGAAGTGC
*
72241744 AAAAGGGCTATGCCCCAGTTTATTG
1 AAAAGGGCTTTGCCCCAGTTTATTG
72241769 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
*
72241795 AAAAGGGCTTTGCCCCAGTTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTATTG
72241819 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
72241842 AAAAGAGGCT
1 AAAAG-GGCT
72241852 AGGCCTCCAG
Statistics
Matches: 78, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
23 8 0.10
24 24 0.31
25 21 0.27
26 25 0.32
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:72249745 original size:11 final size:10
Alignment explanation
Indices: 72249713--72249769 Score: 66
Period size: 9 Copynumber: 5.8 Consensus size: 10
72249703 TACGTGGGAT
72249713 ATGATAT-AC
1 ATGATATGAC
72249722 ATGAT-TGAC
1 ATGATATGAC
72249731 ATGATATGCAC
1 ATGATATG-AC
*
72249742 ATGATATG-T
1 ATGATATGAC
72249751 ATGATATGCAC
1 ATGATATG-AC
72249762 ATGATATG
1 ATGATATG
72249770 TATGAAATGC
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
8 1 0.02
9 20 0.49
10 2 0.05
11 18 0.44
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (10 bp):
ATGATATGAC
Found at i:72249745 original size:20 final size:20
Alignment explanation
Indices: 72249731--72249786 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
72249721 CATGATTGAC
72249731 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
72249751 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
72249771 ATGAAATGCACATGAT
1 ATGATATGCACATGAT
72249787 GTAATCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:72249785 original size:11 final size:11
Alignment explanation
Indices: 72249720--72249786 Score: 65
Period size: 9 Copynumber: 6.6 Consensus size: 11
72249710 GATATGATAT
72249720 ACATGAT-TG-
1 ACATGATATGC
72249729 ACATGATATGC
1 ACATGATATGC
72249740 ACATGATATG-
1 ACATGATATGC
*
72249750 -TATGATATGC
1 ACATGATATGC
72249760 ACATGATATG-
1 ACATGATATGC
* *
72249770 -TATGAAATGC
1 ACATGATATGC
72249780 ACATGAT
1 ACATGAT
72249787 GTAATCATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
9 22 0.48
10 2 0.04
11 22 0.48
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (11 bp):
ACATGATATGC
Found at i:72249864 original size:25 final size:25
Alignment explanation
Indices: 72249836--72249975 Score: 144
Period size: 25 Copynumber: 5.5 Consensus size: 25
72249826 GAGGAAGTGT
72249836 AAAAGGGCTATGCCCCAGTTTATTG
1 AAAAGGGCTATGCCCCAGTTTATTG
72249861 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGC-TATGCCCCAGTTTATTG
* * *
72249887 AAAAAGGCTTTGCCCCAGTTTA-TC
1 AAAAGGGCTATGCCCCAGTTTATTG
*
72249911 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTATGCCCCAGTTTATTG
* *
72249934 AAAAGAGGCTAGGCCTCCA-ATTATATG
1 AAAAG-GGCTATGCC-CCAGTTTAT-TG
72249961 ATAAAGCGGCTATGC
1 A-AAAG-GGCTATGC
72249976 TTCTAGTGGT
Statistics
Matches: 99, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
23 8 0.08
24 26 0.26
25 28 0.28
26 25 0.25
27 1 0.01
28 11 0.11
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATTG
Found at i:72249919 original size:24 final size:25
Alignment explanation
Indices: 72249836--72249943 Score: 150
Period size: 26 Copynumber: 4.4 Consensus size: 25
72249826 GAGGAAGTGT
*
72249836 AAAAGGGCTATGCCCCAGTTTATTG
1 AAAAGGGCTTTGCCCCAGTTTATTG
72249861 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
* *
72249887 AAAAAGGCTTTGCCCCAGTTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTATTG
72249911 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
72249934 AAAAGAGGCT
1 AAAAG-GGCT
72249944 AGGCCTCCAA
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
23 8 0.11
24 23 0.30
25 21 0.28
26 24 0.32
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:72250215 original size:30 final size:31
Alignment explanation
Indices: 72250154--72250243 Score: 94
Period size: 37 Copynumber: 2.7 Consensus size: 31
72250144 CCGTTAAATG
72250154 AAAGGCTTCGGCCCAGTAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
*
72250185 AAAGGCTTCGG-CCAGTGTTATGAATTATGAAATATGA
1 AAAGGCTTCGGCCCA--G---T-AA-TATGAAACATGA
72250222 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTAATATG
72250244 TTGAGATTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 17
0.74 0.01 0.25
Matches are distributed among these distances:
30 7 0.14
31 12 0.24
32 1 0.02
33 1 0.02
35 1 0.02
36 3 0.06
37 22 0.44
38 3 0.06
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAACATGA
Found at i:72252146 original size:40 final size:39
Alignment explanation
Indices: 72252084--72252407 Score: 395
Period size: 40 Copynumber: 8.4 Consensus size: 39
72252074 CAACCAAGTA
* * *
72252084 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAG-TAACTCGCACAAATG
**
72252123 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
72252163 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
*
72252203 CCTTCGGGACTTAGTCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-AATAGTAACTCGCACAAATG
**
72252243 CCTTAAGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
* *
72252283 CCTTCGGGACTTAGCCCGAAATTAGTAACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
72252323 CCTTCGGGA--T---------TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
72252351 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
72252391 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
72252408 CGTTATCATC
Statistics
Matches: 253, Mismatches: 16, Indels: 31
0.84 0.05 0.10
Matches are distributed among these distances:
28 26 0.10
30 1 0.00
38 1 0.00
39 15 0.06
40 209 0.83
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
Found at i:72252345 original size:28 final size:28
Alignment explanation
Indices: 72252303--72252364 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
72252293 TTAGCCCGAA
*
72252303 ATTAGTAACTGGCACAAATGCCTTCGGG
1 ATTAGTAACTCGCACAAATGCCTTCGGG
72252331 ATTAGTAACTCGCACAAATGCCTTCGGG
1 ATTAGTAACTCGCACAAATGCCTTCGGG
72252359 ACTTAG
1 A-TTAG
72252365 CCCGGAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (28 bp):
ATTAGTAACTCGCACAAATGCCTTCGGG
Found at i:72252374 original size:68 final size:68
Alignment explanation
Indices: 72252263--72252404 Score: 257
Period size: 68 Copynumber: 2.1 Consensus size: 68
72252253 TTAGCCCGGA
*
72252263 ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTGGCACAAATGCCTTC
1 ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTC
72252328 GGG
66 GGG
*
72252331 ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC
1 ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTC
72252396 GGG
66 GGG
72252399 ACTTAG
1 A-TTAG
72252405 CCCCGTTATC
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
68 67 0.94
69 4 0.06
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (68 bp):
ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTC
GGG
Found at i:72256182 original size:24 final size:23
Alignment explanation
Indices: 72256150--72256258 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
72256140 ACCAAACGTT
* **
72256150 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
72256174 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
72256198 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
72256222 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
72256246 GCACACATAGTGC
1 GCACACATAGTGC
72256259 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:72256224 original size:48 final size:48
Alignment explanation
Indices: 72256150--72256258 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
72256140 ACCAAACGTT
* **
72256150 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
72256198 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
72256246 GCACACATAGTGC
1 GCACACATAGTGC
72256259 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:72264054 original size:24 final size:23
Alignment explanation
Indices: 72264022--72264106 Score: 107
Period size: 24 Copynumber: 3.6 Consensus size: 23
72264012 ACCAAACGTT
* **
72264022 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
72264046 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
72264070 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
72264094 GCACACATAGTGC
1 GCACACATAGTGC
72264107 ATTTGAGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
23 1 0.02
24 48 0.89
25 5 0.09
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:72271027 original size:46 final size:47
Alignment explanation
Indices: 72270794--72271159 Score: 206
Period size: 46 Copynumber: 7.7 Consensus size: 47
72270784 TAGGGTATAA
* * **
72270794 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAG
1 TGCTGATG-CATGTCCTAGACATGGTCTTACACTGGCTC-TACATCTCG
* ** * **
72270843 T--TGATGCCATGTCCCAGACATGGTCTTACACTTACTAT-CGAAATCG
1 TGCTGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTAC-ATCTCG
* * *
72270889 AGGCTGACAT-CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATTCG
1 -TGCTG--ATGCATGTCCTAGACATGGTCTTACACTGGCTCT-ACAT-CTCG
* * *
72270940 TGCTGATGCCAGGTACC-AAACATGGTCTTACACT-G-AC-ACATCTCG
1 TGCTGATG-CATGT-CCTAGACATGGTCTTACACTGGCTCTACATCTCG
72270985 TAGCTGATGCATGTCCTAGACAT-GTCTTACACTGGCT-TACATCTCG
1 T-GCTGATGCATGTCCTAGACATGGTCTTACACTGGCTCTACATCTCG
* * * * * * *
72271031 AGGTCAAAGCATGTCCTAGACAT-GTCTTACACTAGCTCT-CGTCTCAA
1 TGCT-GATGCATGTCCTAGACATGGTCTTACACTGGCTCTACATCTC-G
* * *
72271078 TGGC-GATGCCATGTCCCAGACATGGTCTTACACCGGCTCT-CATAAT-G
1 T-GCTGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTACAT-CTCG
* *
72271125 TGGTCGATGCATGTCTTAGACAT-GTCTTACACTGG
1 TGCT-GATGCATGTCCTAGACATGGTCTTACACTGG
72271160 TACACAAATA
Statistics
Matches: 248, Mismatches: 43, Indels: 55
0.72 0.12 0.16
Matches are distributed among these distances:
44 12 0.05
45 17 0.07
46 70 0.28
47 60 0.24
48 24 0.10
49 32 0.13
50 25 0.10
51 8 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
TGCTGATGCATGTCCTAGACATGGTCTTACACTGGCTCTACATCTCG
Found at i:72271134 original size:140 final size:144
Alignment explanation
Indices: 72270794--72271159 Score: 373
Period size: 140 Copynumber: 2.6 Consensus size: 144
72270784 TAGGGTATAA
72270794 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT-T-GATGCCATGTCC
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CAT-AAGTGTCGATG-CATGTCC
* ** * * *
72270857 CAGACATGGTCTTACACTTACTATCGAAATCGAGGCTGACATCATGTCCTAGACATGGTCTTACA
63 TAGACAT-GTCTTACACTGGCTATCGAAATCGAGGCTCAAAGCATGTCCTAGACATGGTCTTACA
*
72270922 CTAGCTCTCACATATTCG
127 CTAGCTCTCACATAATCG
* * * * * *
72270940 TGCTGATGCCAGGTACCAAACATGGTCTTACACTGACACATC-T-CGTAG-CTGATGCATGTCCT
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAAGT-GTC-GATGCATGTCCT
**
72271002 AGACATGTCTTACACTGGCT-TAC-ATCTCGAGG-TCAAAGCATGTCCTAGACAT-GTCTTACAC
64 AGACATGTCTTACACTGGCTAT-CGAAATCGAGGCTCAAAGCATGTCCTAGACATGGTCTTACAC
*
72271063 TAGCTCTCGTC-TCAAT-G
128 TAGCTCTC-ACAT-AATCG
* *
72271080 -GC-GATGCCATGTCCCAGACATGGTCTTACACCGGCTC-TCATAATGTGGTCGATGCATGTCTT
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAA-GT-GTCGATGCATGTCCT
72271142 AGACATGTCTTACACTGG
64 AGACATGTCTTACACTGG
72271160 TACACAAATA
Statistics
Matches: 184, Mismatches: 25, Indels: 28
0.78 0.11 0.12
Matches are distributed among these distances:
137 2 0.01
138 30 0.16
139 2 0.01
140 51 0.28
141 21 0.11
142 10 0.05
143 13 0.07
144 14 0.08
145 5 0.03
146 36 0.20
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (144 bp):
TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAAGTGTCGATGCATGTCCTAG
ACATGTCTTACACTGGCTATCGAAATCGAGGCTCAAAGCATGTCCTAGACATGGTCTTACACTAG
CTCTCACATAATCG
Found at i:72273159 original size:342 final size:342
Alignment explanation
Indices: 72272527--72273168 Score: 973
Period size: 342 Copynumber: 1.9 Consensus size: 342
72272517 GGACACGCAT
* * *
72272527 AAAAAAAGAATGAATTTTGCAAAATTTAATTATTTCGCAAGGGAAAAGATTCAAACTTGGGACCT
1 AAAAAAAGAAAGAATTTTGCAAAATTTAATTATTTCGCAAGGGAAAAGATTCAAACATGAGACCT
** * * * *
72272592 TAATCTACTTTCTGTTCTTTTCCATTTATCAATTAACCATTACGCTATTTCCTTATTTTTGAAAT
66 TAATCTACTTTCCATGCTTTTCAATTTATCAATTAACCACTACGATATTTCCTTATTTTTGAAAT
* *
72272657 AATTTTGCAATATTTATTTTAAAAACAAGACATGTCACATACTAGAGATTGATGCAAAATTGCAA
131 AATTTTACAATATTTATTTTAAAAACAAGACATGTCACATACTAGAGATTGATGCAAAATTGAAA
* * * **
72272722 AATAATATAAATGGTGCGTGAGAAGGAATTTGAACTTGCGTTTCAAGGAATGTTTCACTAACACT
196 AATAATATAAATAGTGCGAGAAAAGGAATTTGAACTTGCGTTTCAAGGAACATTTCACTAACACT
* * *
72272787 TACCCAACAAACCAATACCTCGTATTATTCCCTAAAAATGCACAAATCATCTAAAAGGGTATGGA
261 TAACCAACAAACCAACACCTCATATTATTCCCTAAAAATGCACAAATCATCTAAAAGGGTATGGA
72272852 CAAGACACACATAAATA
326 CAAGACACACATAAATA
* *
72272869 AAAAAAAGAAAGTATTTTGCAAAATTTAATTATTTTGCAAGGGAAAAGATTCAAACATGAGACCT
1 AAAAAAAGAAAGAATTTTGCAAAATTTAATTATTTCGCAAGGGAAAAGATTCAAACATGAGACCT
* *
72272934 TAATCTACTTTCCATGCTTTTCAATTTATCAATTAACCACTAGGATATTTCCTTATTTTTTAAAT
66 TAATCTACTTTCCATGCTTTTCAATTTATCAATTAACCACTACGATATTTCCTTATTTTTGAAAT
* * ** *
72272999 AATTTTACAATATTTATTTTTAAAACAATATGTGTCACATACTA-AGGTTTGATGCAAAATTGAA
131 AATTTTACAATATTTATTTTAAAAACAAGACATGTCACATACTAGA-GATTGATGCAAAATTGAA
* *
72273063 AAATAATATAAATAGTGTGAGAAAAGGAATTTGAACTTAG-GTTTTAAGGAACATTTCACTAACA
195 AAATAATATAAATAGTGCGAGAAAAGGAATTTGAACTT-GCGTTTCAAGGAACATTTCACTAACA
*
72273127 CTTAACCAACAAACCAACACCTCATTTTATTCCCTAAAAATG
259 CTTAACCAACAAACCAACACCTCATATTATTCCCTAAAAATG
72273169 TATAGATAAT
Statistics
Matches: 267, Mismatches: 31, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
341 1 0.00
342 265 0.99
343 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (342 bp):
AAAAAAAGAAAGAATTTTGCAAAATTTAATTATTTCGCAAGGGAAAAGATTCAAACATGAGACCT
TAATCTACTTTCCATGCTTTTCAATTTATCAATTAACCACTACGATATTTCCTTATTTTTGAAAT
AATTTTACAATATTTATTTTAAAAACAAGACATGTCACATACTAGAGATTGATGCAAAATTGAAA
AATAATATAAATAGTGCGAGAAAAGGAATTTGAACTTGCGTTTCAAGGAACATTTCACTAACACT
TAACCAACAAACCAACACCTCATATTATTCCCTAAAAATGCACAAATCATCTAAAAGGGTATGGA
CAAGACACACATAAATA
Found at i:72274946 original size:43 final size:43
Alignment explanation
Indices: 72274896--72274980 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
72274886 TGATATATGT
* * *
72274896 AGCATCCGAGCTTGTTGAGTGGTCCGACTTCATTATGTATGCG
1 AGCATCCGAGCTTGTTGAATGGTCCGACTTCATAATGGATGCG
*
72274939 AGCATCCGAGCTTGTTGAATGGTCCGAGTTCATAATGGATGC
1 AGCATCCGAGCTTGTTGAATGGTCCGACTTCATAATGGATGC
72274981 CATACATGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (43 bp):
AGCATCCGAGCTTGTTGAATGGTCCGACTTCATAATGGATGCG
Found at i:72279159 original size:27 final size:27
Alignment explanation
Indices: 72279091--72279161 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
72279081 CGACTTGTAA
* *
72279091 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
72279118 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
72279145 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
72279162 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:72279187 original size:54 final size:53
Alignment explanation
Indices: 72279129--72279267 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 53
72279119 ATTACCGTTT
72279129 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
72279183 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
* *** * *
72279237 TACCATGGTTTGAAAAATTACTAAAATACCC
1 TACCCTCAATTGTAAAATTACCAAAATACCC
72279268 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 27 0.36
54 39 0.52
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:72279254 original size:26 final size:27
Alignment explanation
Indices: 72279145--72279267 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
72279135 CAATTTACAG
72279145 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
72279172 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
72279199 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
72279226 AATTACCAAAATA-CCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
72279252 AATTACTAAAATACCC
1 AATTACCAAAATACCC
72279268 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:72279280 original size:53 final size:53
Alignment explanation
Indices: 72279145--72279293 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
72279135 CAATTTACAG
* ** * * *
72279145 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATA-CCATGGTTTGAAA
* **
72279199 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
* **
72279252 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
72279294 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 43 0.52
54 36 0.43
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
Found at i:72279284 original size:27 final size:27
Alignment explanation
Indices: 72279250--72279311 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
72279240 CATGGTTTGA
72279250 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
72279277 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
72279304 AAAATTAC
1 AAAATTAC
72279312 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:72279307 original size:80 final size:81
Alignment explanation
Indices: 72279145--72279313 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 81
72279135 CAATTTACAG
* **
72279145 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
**
72279210 TACCCTTTGTTTATAA
66 TACCCTTTGTGGATAA
* * *
72279226 AATTACCAAAATA-CCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
*
72279288 AATACCC-TTGTGGGGTAA
64 AATACCCTTTGT-GGATAA
72279306 AATTACCA
1 AATTACCA
72279314 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 6 0.08
80 56 0.74
81 14 0.18
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTGGATAA
Found at i:72280007 original size:27 final size:28
Alignment explanation
Indices: 72279932--72280027 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
72279922 GCGTAGATCA
72279932 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72279960 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72279988 CGAAATTA-CCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
72280015 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
72280028 GGGTTTAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.05
26 2 0.03
27 24 0.38
28 34 0.54
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:72283307 original size:27 final size:27
Alignment explanation
Indices: 72283239--72283309 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
72283229 CGACTTGTAA
* *
72283239 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
72283266 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
72283293 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
72283310 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:72283335 original size:54 final size:53
Alignment explanation
Indices: 72283277--72283415 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 53
72283267 ATTACCGTTT
72283277 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
72283331 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
* *** * *
72283385 TACCATGGTTTGAAAAATTACTAAAATACCC
1 TACCCTCAATTGTAAAATTACCAAAATACCC
72283416 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 27 0.36
54 39 0.52
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:72283402 original size:26 final size:27
Alignment explanation
Indices: 72283293--72283415 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
72283283 CAATTTACAG
72283293 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
72283320 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
72283347 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
72283374 AATTACCAAAATA-CCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
72283400 AATTACTAAAATACCC
1 AATTACCAAAATACCC
72283416 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:72283428 original size:53 final size:53
Alignment explanation
Indices: 72283293--72283441 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
72283283 CAATTTACAG
* ** * * *
72283293 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATA-CCATGGTTTGAAA
* **
72283347 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
* **
72283400 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
72283442 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 43 0.52
54 36 0.43
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
Found at i:72283432 original size:27 final size:27
Alignment explanation
Indices: 72283398--72283459 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
72283388 CATGGTTTGA
72283398 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
72283425 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
72283452 AAAATTAC
1 AAAATTAC
72283460 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:72283455 original size:80 final size:81
Alignment explanation
Indices: 72283293--72283461 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 81
72283283 CAATTTACAG
* **
72283293 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
**
72283358 TACCCTTTGTTTATAA
66 TACCCTTTGTGGATAA
* * *
72283374 AATTACCAAAATA-CCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
*
72283436 AATACCC-TTGTGGGGTAA
64 AATACCCTTTGT-GGATAA
72283454 AATTACCA
1 AATTACCA
72283462 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 6 0.08
80 56 0.74
81 14 0.18
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTGGATAA
Found at i:72284155 original size:27 final size:28
Alignment explanation
Indices: 72284080--72284175 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
72284070 GCGTAGATCA
72284080 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72284108 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72284136 CGAAATTA-CCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
72284163 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
72284176 GGGTTTAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.05
26 2 0.03
27 24 0.38
28 34 0.54
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:72287454 original size:27 final size:27
Alignment explanation
Indices: 72287386--72287456 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
72287376 CGACTTGTAA
* *
72287386 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
72287413 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
72287440 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
72287457 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:72287482 original size:54 final size:53
Alignment explanation
Indices: 72287424--72287562 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 53
72287414 ATTACCGTTT
72287424 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
72287478 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
* *** * *
72287532 TACCATGGTTTGAAAAATTACTAAAATACCC
1 TACCCTCAATTGTAAAATTACCAAAATACCC
72287563 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 27 0.36
54 39 0.52
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:72287549 original size:26 final size:27
Alignment explanation
Indices: 72287440--72287562 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
72287430 CAATTTACAG
72287440 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
72287467 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
72287494 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
72287521 AATTACCAAAATA-CCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
72287547 AATTACTAAAATACCC
1 AATTACCAAAATACCC
72287563 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:72287575 original size:53 final size:53
Alignment explanation
Indices: 72287440--72287588 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
72287430 CAATTTACAG
* ** * * *
72287440 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATA-CCATGGTTTGAAA
* **
72287494 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
* **
72287547 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
72287589 CTTGTGGGTA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 43 0.52
54 36 0.43
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
Found at i:72287597 original size:26 final size:26
Alignment explanation
Indices: 72287440--72287605 Score: 116
Period size: 27 Copynumber: 6.2 Consensus size: 26
72287430 CAATTTACAG
* ***
72287440 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACTAAAATACCCTT-GTGGGTAA
* * * **
72287467 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATA-CCCTTGTGGGTAA
***
72287494 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACTAAAATACCC-TTGTGGGTAA
* * * ** *
72287521 AATTACCAAAATACCATGGTTTGAAA
1 AATTACTAAAATACCCTTGTGGGTAA
*
72287547 AATTACTAAAATACCCCTGTAGGGTAA
1 AATTACTAAAATACCCTTGT-GGGTAA
*
72287574 AATTACTGAAATACCCTTGTGGGTAA
1 AATTACTAAAATACCCTTGTGGGTAA
72287600 AATTAC
1 AATTAC
72287606 CATTTTGCCC
Statistics
Matches: 115, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
26 38 0.33
27 73 0.63
28 4 0.03
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (26 bp):
AATTACTAAAATACCCTTGTGGGTAA
Found at i:72288301 original size:27 final size:28
Alignment explanation
Indices: 72288226--72288321 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
72288216 GCGTAGATCA
72288226 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72288254 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72288282 CGAAATTA-CCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
72288309 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
72288322 GGGTTTAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.05
26 2 0.03
27 24 0.38
28 34 0.54
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:72298157 original size:51 final size:49
Alignment explanation
Indices: 72297956--72298213 Score: 466
Period size: 49 Copynumber: 5.3 Consensus size: 49
72297946 TACATGATAG
*
72297956 TATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
72298005 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
72298054 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
72298103 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
72298154 TATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
72298201 TATATGTGATAAG
1 TATATGTGATAAG
72298214 TCCCGAAGGG
Statistics
Matches: 205, Mismatches: 2, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
47 15 0.07
49 142 0.69
51 48 0.23
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:72299853 original size:119 final size:119
Alignment explanation
Indices: 72299641--72299990 Score: 558
Period size: 119 Copynumber: 2.9 Consensus size: 119
72299631 GAGAATTGAG
*
72299641 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
1 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
*
72299706 ATGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72299761 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGA
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGA
* *
72299826 AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGATGAGCATTCGTGCT
66 AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
72299880 AGTGATGTATCCGGGCTAAGTCTCGATGAGCATTCGTGCTAGCGATATATCCGTGCTAA-ACCCG
1 AGTGATGTATCCGGGCTAAGTC-CGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
* * * *
72299944 AAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
65 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
72299991 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
119 161 0.75
120 53 0.25
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (119 bp):
AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGA
AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:72299880 original size:23 final size:23
Alignment explanation
Indices: 72299854--72299920 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
72299844 ATGTATCCGG
72299854 GCTAAGTCTCGATGAGCATTCGT
1 GCTAAGTCTCGATGAGCATTCGT
* * *
72299877 GCT-AG--T-GAT--GTATCCGG
1 GCTAAGTCTCGATGAGCATTCGT
72299894 GCTAAGTCTCGATGAGCATTCGT
1 GCTAAGTCTCGATGAGCATTCGT
72299917 GCTA
1 GCTA
72299921 GCGATATATC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 8 0.25
18 2 0.06
19 3 0.09
20 2 0.06
21 3 0.09
22 2 0.06
23 12 0.38
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (23 bp):
GCTAAGTCTCGATGAGCATTCGT
Found at i:72299931 original size:159 final size:159
Alignment explanation
Indices: 72299641--72299990 Score: 601
Period size: 159 Copynumber: 2.2 Consensus size: 159
72299631 GAGAATTGAG
72299641 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
* *
72299706 ATGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
66 ATGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGCGATATAT
**
72299771 CCGGGCTAAGTCCGAAGAGCATTCGTGCT
131 CCGGGCTAAACCCGAAGAGCATTCGTGCT
72299800 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
* *
72299865 ATGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGATGAGCATTCGTGCTAGCGATATAT
66 ATGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGCGATATAT
*
72299930 CCGTGCTAAACCCGAAGAGCATTCGTGCT
131 CCGGGCTAAACCCGAAGAGCATTCGTGCT
* * * *
72299959 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
72299991 ATCATGCTGG
Statistics
Matches: 180, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
159 180 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (159 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
ATGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGCGATATAT
CCGGGCTAAACCCGAAGAGCATTCGTGCT
Found at i:72300002 original size:40 final size:40
Alignment explanation
Indices: 72299641--72299990 Score: 560
Period size: 40 Copynumber: 8.8 Consensus size: 40
72299631 GAGAATTGAG
72299641 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72299681 AGTGATGTATCCGGGCTAAGTCTCGATGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72299721 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72299761 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72299800 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72299840 AGTGATGTATCCGGGCTAAGTCTCGATGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72299880 AGTGATGTATCCGGGCTAAGTCTCGATGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
72299920 AGCGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
72299959 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
72299991 ATCATGCTGG
Statistics
Matches: 290, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 70 0.24
40 220 0.76
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:72304104 original size:49 final size:49
Alignment explanation
Indices: 72304037--72304341 Score: 467
Period size: 49 Copynumber: 6.3 Consensus size: 49
72304027 TACATGATAG
72304037 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
72304086 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
72304135 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
72304186 TATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
72304235 TATATGTGATAAGGCCGAATGGCC-ATTGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATA
* * * * * * *
72304282 TATATGTGATAGGGTCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
72304331 -A-ATGTGATAAG
1 TATATGTGATAAG
72304342 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 9, Indels: 14
0.91 0.03 0.05
Matches are distributed among these distances:
47 49 0.20
48 3 0.01
49 141 0.59
51 48 0.20
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:72304243 original size:100 final size:100
Alignment explanation
Indices: 72304037--72304286 Score: 452
Period size: 100 Copynumber: 2.5 Consensus size: 100
72304027 TACATGATAG
72304037 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
*
72304100 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 CCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
72304135 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
72304200 CCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
66 CCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
*
72304235 TATATGTGATAAGGCCGAATGGCC-ATTGTGATGAATGTGAAAGTGTATATAT
1 TATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATATAT
72304287 GTGATAGGGT
Statistics
Matches: 147, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
98 45 0.31
99 1 0.01
100 101 0.69
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (100 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
CCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
Found at i:72306433 original size:71 final size:71
Alignment explanation
Indices: 72306347--72306510 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
72306337 CGATTTGTCT
72306347 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72306412 CTTTCA
66 CTTTCA
72306418 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72306483 CTTTCA
66 CTTTCA
*
72306489 CGTAGCTCTCTTATCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72306511 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72306548 original size:71 final size:70
Alignment explanation
Indices: 72306347--72306544 Score: 240
Period size: 71 Copynumber: 2.8 Consensus size: 70
72306337 CGATTTGTCT
* * * * *
72306347 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTATCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
72306412 CTTTCA
65 CTTTCA
* * * * *
72306418 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTATCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
72306483 CTTTCA
65 CTTTCA
* *
72306489 CGTAGCTCTCTTATCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTATCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
72306545 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTATCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72307998 original size:43 final size:43
Alignment explanation
Indices: 72307937--72308019 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
72307927 TGAAGAATCA
72307937 GTCAGAATTCTAGCTCGAGACGTTAAAGAATTGAGAAATAAAC
1 GTCAGAATTCTAGCTCGAGACGTTAAAGAATTGAGAAATAAAC
72307980 GTCAGAATTCTAGCTCGAGACGTTAAAGAATTGAGAAATA
1 GTCAGAATTCTAGCTCGAGACGTTAAAGAATTGAGAAATA
72308020 CACGCATAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.24
Consensus pattern (43 bp):
GTCAGAATTCTAGCTCGAGACGTTAAAGAATTGAGAAATAAAC
Found at i:72318127 original size:42 final size:41
Alignment explanation
Indices: 72318063--72318218 Score: 190
Period size: 42 Copynumber: 3.7 Consensus size: 41
72318053 TCTAAGGCTA
72318063 CGTGTAAGACCATATCTAGGATATGGCATC-AGTATGAGACTT
1 CGTGTAAGACCATATCTAGGATATGGCATCGA-TATGAGA-TT
*
72318105 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGA-TT
* * * *
72318147 CGTGTAAGACCATAGCTGGGCA-AGTTGCATCGATATGAGATCC
1 CGTGTAAGACCATATCTAGG-ATA-TGGCATCGATATGAGAT-T
*
72318190 CATGTAAGACCATATCTAGGATATGGCAT
1 CGTGTAAGACCATATCTAGGATATGGCAT
72318219 TGGTATGATA
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
42 65 0.65
43 35 0.35
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (41 bp):
CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGATT
Found at i:72327419 original size:30 final size:31
Alignment explanation
Indices: 72327361--72327419 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
72327351 ATAATAATAG
* *
72327361 ATTTAATTTTTAACACTTACATATTTTATCA
1 ATTTAATTTTTAACACTTAAATAATTTATCA
* *
72327392 ATTTAA-TTTTAATATTTAAATAATTTAT
1 ATTTAATTTTTAACACTTAAATAATTTAT
72327420 TAAAATCTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (31 bp):
ATTTAATTTTTAACACTTAAATAATTTATCA
Found at i:72338183 original size:7 final size:7
Alignment explanation
Indices: 72338166--72338198 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
72338156 ATATTATGTA
72338166 TAACAATT
1 TAAC-ATT
72338174 TAACATT
1 TAACATT
72338181 TAACATT
1 TAACATT
72338188 TAACATT
1 TAACATT
72338195 TAAC
1 TAAC
72338199 CGCTTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.84
8 4 0.16
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.39
Consensus pattern (7 bp):
TAACATT
Found at i:72340545 original size:47 final size:47
Alignment explanation
Indices: 72340474--72340792 Score: 476
Period size: 47 Copynumber: 6.7 Consensus size: 47
72340464 CCCTTCGGGA
* * * * * *
72340474 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72340521 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72340568 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72340615 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72340662 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72340711 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72340760 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
72340793 GCGTAAAATC
Statistics
Matches: 256, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
47 142 0.55
49 114 0.45
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72340552 original size:25 final size:25
Alignment explanation
Indices: 72340524--72340602 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
72340514 ACTCGGCCCT
*
72340524 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
72340549 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
72340571 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
72340596 ATCACAT
1 ATCACAT
72340603 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:72343704 original size:22 final size:22
Alignment explanation
Indices: 72343679--72343721 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
72343669 CACTAAGTCA
*
72343679 ACAGAACGGCTCAACGCCGTAG
1 ACAGAACGGCTAAACGCCGTAG
*
72343701 ACAGAACGGCTAAAGGCCGTA
1 ACAGAACGGCTAAACGCCGTA
72343722 AATATAGCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.28, G:0.28, T:0.09
Consensus pattern (22 bp):
ACAGAACGGCTAAACGCCGTAG
Found at i:72344024 original size:27 final size:27
Alignment explanation
Indices: 72343945--72344018 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
72343935 TGGAACATAA
* * *
72343945 GGGCATAATCGTCATTCTACCATACAG
1 GGGCATTATGGTCATTTTACCATACAG
* * * *
72343972 GGGTAATACGGTCATTTTACCTTACAG
1 GGGCATTATGGTCATTTTACCATACAG
72343999 GGGCATTATGGTCATTTTAC
1 GGGCATTATGGTCATTTTAC
72344019 ACTACAAGGG
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (27 bp):
GGGCATTATGGTCATTTTACCATACAG
Found at i:72344042 original size:27 final size:27
Alignment explanation
Indices: 72344024--72344077 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
72344014 TTTACACTAC
72344024 AAGGGTATTTCAGTAATTTTACAAACT
1 AAGGGTATTTCAGTAATTTTACAAACT
* *
72344051 AGGGGTATTTCGGTAATTTTACAAACT
1 AAGGGTATTTCAGTAATTTTACAAACT
72344078 GAAGTCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTCAGTAATTTTACAAACT
Found at i:72344247 original size:29 final size:29
Alignment explanation
Indices: 72344147--72344236 Score: 162
Period size: 29 Copynumber: 3.1 Consensus size: 29
72344137 ACAGACATAA
72344147 CGGTGCAAATGGGCCTAAGGCCCATTACT
1 CGGTGCAAATGGGCCTAAGGCCCATTACT
72344176 CGGTGCAAATGGGCCTAAGGCCCATTACT
1 CGGTGCAAATGGGCCTAAGGCCCATTACT
* *
72344205 CGGTGCAAATGGGCTTAAAGCCCATTACT
1 CGGTGCAAATGGGCCTAAGGCCCATTACT
72344234 CGG
1 CGG
72344237 CCCAAGTGGG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (29 bp):
CGGTGCAAATGGGCCTAAGGCCCATTACT
Found at i:72344381 original size:18 final size:20
Alignment explanation
Indices: 72344354--72344391 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
72344344 GTGTAGGGCC
72344354 CACGAGCCCAT-TAGGCCCA
1 CACGAGCCCATCTAGGCCCA
72344373 CACGA-CCCATCTAGGCCCA
1 CACGAGCCCATCTAGGCCCA
72344392 ACGTGGCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.26, C:0.45, G:0.18, T:0.11
Consensus pattern (20 bp):
CACGAGCCCATCTAGGCCCA
Found at i:72344552 original size:13 final size:13
Alignment explanation
Indices: 72344534--72344560 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72344524 GTACGCCCAT
72344534 GTTCCATGAGATC
1 GTTCCATGAGATC
72344547 GTTCCATGAGATC
1 GTTCCATGAGATC
72344560 G
1 G
72344561 CTCGTGAGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (13 bp):
GTTCCATGAGATC
Found at i:72351374 original size:23 final size:23
Alignment explanation
Indices: 72351343--72351446 Score: 140
Period size: 23 Copynumber: 4.6 Consensus size: 23
72351333 CTGAGTTGAT
*
72351343 AAACAGTAAGCTCTATTGAGCTG
1 AAACGGTAAGCTCTATTGAGCTG
*
72351366 AAACGGTAAGCTCTAATGAGCTG
1 AAACGGTAAGCTCTATTGAGCTG
*
72351389 AAACGGTAAGCTCTATCGAGCTG
1 AAACGGTAAGCTCTATTGAGCTG
* *
72351412 -AACAGTAAGCTC-ATAAGAGCTG
1 AAACGGTAAGCTCTAT-TGAGCTG
72351434 AAACGGTAAGCTC
1 AAACGGTAAGCTC
72351447 CAATGGGCTG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
21 2 0.03
22 17 0.24
23 53 0.74
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (23 bp):
AAACGGTAAGCTCTATTGAGCTG
Found at i:72351422 original size:68 final size:69
Alignment explanation
Indices: 72351344--72351479 Score: 195
Period size: 68 Copynumber: 2.0 Consensus size: 69
72351334 TGAGTTGATA
* * *
72351344 AACAGTAAGCTC-TATTGAGCTGAAACGGTAAGCTCTAATGAGCTGA-AACGGTAAGCTCTATCG
1 AACAGTAAGCTCATA-AGAGCTGAAACGGTAAGCTCCAATGAGCTGATAACAGTAAGCTCTATCG
72351407 AGCTG
65 AGCTG
* * *
72351412 AACAGTAAGCTCATAAGAGCTGAAACGGTAAGCTCCAATGGGCTGATTACAGTAAGCTCTTTCGA
1 AACAGTAAGCTCATAAGAGCTGAAACGGTAAGCTCCAATGAGCTGATAACAGTAAGCTCTATCGA
72351477 GCT
66 GCT
72351480 AATATATCGG
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
68 40 0.67
69 20 0.33
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (69 bp):
AACAGTAAGCTCATAAGAGCTGAAACGGTAAGCTCCAATGAGCTGATAACAGTAAGCTCTATCGA
GCTG
Found at i:72351435 original size:45 final size:46
Alignment explanation
Indices: 72351343--72351446 Score: 158
Period size: 45 Copynumber: 2.3 Consensus size: 46
72351333 CTGAGTTGAT
* * *
72351343 AAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTAATGAGCTG
1 AAACGGTAAGCTCTATCGAGCTGAAACAGTAAGCTCTAATGAGCTG
72351389 AAACGGTAAGCTCTATCGAGCTG-AACAGTAAGCTCATAA-GAGCTG
1 AAACGGTAAGCTCTATCGAGCTGAAACAGTAAGCTC-TAATGAGCTG
72351434 AAACGGTAAGCTC
1 AAACGGTAAGCTC
72351447 CAATGGGCTG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
45 30 0.56
46 24 0.44
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (46 bp):
AAACGGTAAGCTCTATCGAGCTGAAACAGTAAGCTCTAATGAGCTG
Found at i:72351457 original size:45 final size:45
Alignment explanation
Indices: 72351343--72351471 Score: 145
Period size: 45 Copynumber: 2.8 Consensus size: 45
72351333 CTGAGTTGAT
* * * *
72351343 AAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTAATGAGCTG
1 AAACGGTAAGCTCCAATGAGCTG-AACAGTAAGCTCTAATGAGCTG
*
72351389 AAACGGTAAGCT-CTATCGAGCTGAACAGTAAGCTCATAA-GAGCTG
1 AAACGGTAAGCTCCAAT-GAGCTGAACAGTAAGCTC-TAATGAGCTG
*
72351434 AAACGGTAAGCTCCAATGGGCTGATTACAGTAAGCTCT
1 AAACGGTAAGCTCCAATGAGCTGA--ACAGTAAGCTCT
72351472 TTCGAGCTAA
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
45 36 0.51
46 24 0.34
47 11 0.15
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (45 bp):
AAACGGTAAGCTCCAATGAGCTGAACAGTAAGCTCTAATGAGCTG
Found at i:72357689 original size:27 final size:26
Alignment explanation
Indices: 72357645--72357696 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72357635 CTCGCTGCAA
*
72357645 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
72357672 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
72357697 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:72357789 original size:27 final size:26
Alignment explanation
Indices: 72357737--72357795 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
72357727 ACATATATAC
*
72357737 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
72357763 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
72357790 ATATCT
1 ATATCT
72357796 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Done.