Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 246 of 345
Found at i:72363767 original size:22 final size:23
Alignment explanation
Indices: 72363724--72363771 Score: 55
Period size: 25 Copynumber: 2.1 Consensus size: 23
72363714 TTTTCTTTTT
72363724 ATGTTTTATTATATTATAACTTATA
1 ATGTTTTATTATA-TATAACTT-TA
*
72363749 ATGTTTTATTA-A-ATCACTTTA
1 ATGTTTTATTATATATAACTTTA
72363770 AT
1 AT
72363772 AACCTTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 4 0.18
22 6 0.27
24 1 0.05
25 11 0.50
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (23 bp):
ATGTTTTATTATATATAACTTTA
Found at i:72366984 original size:46 final size:46
Alignment explanation
Indices: 72366934--72367109 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72366924 TGGTTGAGCA
72366934 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72366980 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72367025 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72367073 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72367110 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72367090 original size:93 final size:93
Alignment explanation
Indices: 72366931--72367102 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72366921 GGATGGTTGA
* *
72366931 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72366996 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72367024 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72367089 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72367103 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72372949 original size:40 final size:40
Alignment explanation
Indices: 72372894--72373081 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
72372884 ATAACCACAA
* * *
72372894 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
72372934 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
72372974 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGTAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
72373014 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT-AGCAACTC
* *
72373054 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
72373082 GTATCATTCA
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 133 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:72373013 original size:80 final size:79
Alignment explanation
Indices: 72372874--72373081 Score: 310
Period size: 80 Copynumber: 2.6 Consensus size: 79
72372864 TCTTCAGAAT
* * *
72372874 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
72372938 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
72372953 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGTAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
72373018 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
72373033 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGG
72373082 GTATCATTCA
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 5 0.04
80 111 0.95
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:72377892 original size:46 final size:45
Alignment explanation
Indices: 72377842--72378017 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
72377832 TGGTTGAGCA
72377842 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
72377888 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
72377933 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
72377981 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72378018 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:72377998 original size:93 final size:93
Alignment explanation
Indices: 72377839--72378010 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
72377829 GGATGGTTGA
* *
72377839 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72377904 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
72377932 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72377997 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72378011 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72381138 original size:36 final size:36
Alignment explanation
Indices: 72381082--72381167 Score: 138
Period size: 36 Copynumber: 2.3 Consensus size: 36
72381072 TACGAAGTCT
72381082 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
72381118 GTACCCGGACA-AATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
72381154 TCACCCGGAACATA
1 T-ACCCGG-ACATA
72381168 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
35 1 0.02
36 31 0.67
37 13 0.28
38 1 0.02
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.20
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:72381307 original size:49 final size:49
Alignment explanation
Indices: 72381208--72381601 Score: 617
Period size: 49 Copynumber: 7.9 Consensus size: 49
72381198 ATTACAACAT
* * * * * *
72381208 TCACATCAGCCATTCGGCTTTACCACATATATATATACACTTTCATATTCA
1 TCACATCGGCCATTAGGCCTTATCAC--ATATATATACATTTTCACATTCA
*
72381259 TCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
* *
72381308 TCACATCGACCATTAGGCCTTATCACATATATATACATTTCCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
* *
72381357 TCACATCGGCCATTAGGCCTTATCACATATACATACCTTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
72381406 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
*
72381455 TCACATCGGCCATTAGGCCTTATCACATATATATATATACCTTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCAC----ATATATATACATTTTCACATTCA
*
72381508 TCACATCGGCCATTAGGCCTTATCACACATATATACATTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
72381557 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACA
72381602 AATTTTGATA
Statistics
Matches: 319, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
49 250 0.78
51 21 0.07
53 48 0.15
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (49 bp):
TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
Found at i:72381559 original size:151 final size:147
Alignment explanation
Indices: 72381238--72381601 Score: 611
Period size: 151 Copynumber: 2.4 Consensus size: 147
72381228 TACCACATAT
* * *
72381238 ATATATACACTTTCATATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCAC
1 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCAC
72381303 ATTCATCACATCGACCATTAGGCCTTATCACATATATATACATTTCCACATTCATCACATCGGCC
66 ATTCATCACATCGACCATTAGGCCTTATCACATATATATACATTTCCACATTCATCACATCGGCC
*
72381368 ATTAGGCCTTATCACAT
131 ATTAGGCCTTATCACAC
* *
72381385 ATACATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCAC
1 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCAC
* * *
72381450 ATTCATCACATCGGCCATTAGGCCTTATCACATATATATATATACCTTTTCACATTCATCACATC
66 ATTCATCACATCGACCATTAGGCCTTATCAC----ATATATATACATTTCCACATTCATCACATC
72381515 GGCCATTAGGCCTTATCACAC
127 GGCCATTAGGCCTTATCACAC
72381536 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCAC
1 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCAC
72381601 A
66 A
72381602 AATTTTGATA
Statistics
Matches: 202, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
147 90 0.45
151 112 0.55
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (147 bp):
ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCAC
ATTCATCACATCGACCATTAGGCCTTATCACATATATATACATTTCCACATTCATCACATCGGCC
ATTAGGCCTTATCACAC
Found at i:72385162 original size:15 final size:15
Alignment explanation
Indices: 72385109--72385183 Score: 71
Period size: 15 Copynumber: 5.0 Consensus size: 15
72385099 TGGAGATAAC
72385109 AAGAAATCC-AGAATA
1 AAGAAATCCAAG-ATA
*
72385124 AAGAAATCCAAGACA
1 AAGAAATCCAAGATA
* **
72385139 GAGGGATCCAAGATA
1 AAGAAATCCAAGATA
* *
72385154 AAGATATCCAAGGTA
1 AAGAAATCCAAGATA
*
72385169 CAGAAATCCAAGATA
1 AAGAAATCCAAGATA
72385184 CCATATCACA
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
15 45 0.96
16 2 0.04
ACGTcount: A:0.52, C:0.16, G:0.19, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:72393390 original size:50 final size:50
Alignment explanation
Indices: 72393317--72393668 Score: 382
Period size: 50 Copynumber: 7.0 Consensus size: 50
72393307 TAAGACAGTT
* *
72393317 TTAGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * *
72393367 TTAGGTCGCATGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * *
72393417 TTTCGATCATGTGTGTAGTACTAAGTGCAGGATACTACGTGTATCAAATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
72393468 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * *
72393518 ATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * * * * *
72393569 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
72393619 ATAAGTCACGTGAGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
72393669 AGAGATCGCA
Statistics
Matches: 244, Mismatches: 54, Indels: 8
0.80 0.18 0.03
Matches are distributed among these distances:
49 2 0.01
50 165 0.68
51 76 0.31
52 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:72393511 original size:101 final size:98
Alignment explanation
Indices: 72393275--72393666 Score: 361
Period size: 101 Copynumber: 3.9 Consensus size: 98
72393265 TGAGAACACA
* * * *** * *
72393275 TGTGTAGTACTATGTGCAGGCTGCTATGTGTTTAAGACAGTTTTAGGTCACGCGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG--TTA-GTCACGTGTGTAGTACTAA
* * *
72393340 GTGCAGGCTACTACGTGTACTAGATTGTTAGGTCGCA
63 GTGCAGGCTACTACGTGTAC-AGATAGTTAGGTCACG
* * * *
72393377 TGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCATGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG-TTAG-TCACGTGTGTAGTACTAAG
* * *
72393442 TGCAGGATACTACGTGTATCAAATGGTTAGGTCACG
64 TGCAGGCTACTACGTGTA-CAGATAGTTAGGTCACG
* * * * * *
72393478 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTA-GTCACGTGTGTAGTACTAAGT
* * * * * * *
72393543 GCAGGCTACTATGCGTACCCGTTAACTTCGATCACG
65 GCAGGCTACTACGTGTA-CAGAT-AGTTAGGTCACG
* * * *
72393579 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATGGATAAGTCACGTGAGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG-TTAGTCACGTGTGTAGTACTAAGT
72393644 GCAGGCTACTACGTGTACCAGAT
65 GCAGGCTACTACGTGTA-CAGAT
72393667 TGAGAGATCG
Statistics
Matches: 234, Mismatches: 51, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
100 35 0.15
101 166 0.71
102 33 0.14
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTAGTCACGTGTGTAGTACTAAGTG
CAGGCTACTACGTGTACAGATAGTTAGGTCACG
Found at i:72393547 original size:151 final size:151
Alignment explanation
Indices: 72393317--72393683 Score: 581
Period size: 151 Copynumber: 2.4 Consensus size: 151
72393307 TAAGACAGTT
* * *
72393317 TTAGGTCACGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
** *
72393382 AATACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCATGTGTGTAGTACTAAGTGCAG
66 AATACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAG
*
72393447 GATACTACGTGTATCAAATGG
131 GATACTACGCGTATCAAATGG
72393468 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* *
72393533 AGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AATACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAG
* * *
72393598 GCTACTATGCGTATCAGATGG
131 GATACTACGCGTATCAAATGG
* * * * *
72393619 ATAAGTCACGTGAGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAGAGATCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
72393684 GACACCCGAA
Statistics
Matches: 199, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
151 199 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
AATACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAG
GATACTACGCGTATCAAATGG
Found at i:72394527 original size:17 final size:18
Alignment explanation
Indices: 72394485--72394533 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
72394475 AGTTGAAAAG
72394485 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
72394504 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
72394521 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
72394534 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:72395430 original size:40 final size:39
Alignment explanation
Indices: 72395349--72395513 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 39
72395339 AAATTGAATG
* * * **
72395349 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGTGATT
* *
72395388 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTAGTGATT
* * *
72395428 ATATCC-GGCTAAGGCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGCCCGAAGGCAATT-GTGCTAGTGATT
* *
72395466 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTA-GTGATT
72395506 ATATCCGG
1 ATATCCGG
72395514 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
37 3 0.03
38 22 0.21
39 27 0.26
40 49 0.48
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGTGATT
Found at i:72404191 original size:48 final size:48
Alignment explanation
Indices: 72404120--72404478 Score: 301
Period size: 48 Copynumber: 7.5 Consensus size: 48
72404110 CACATATCGT
* * ** * * *
72404120 TGCCATATCCCGGATATGGTCTTATACAAGGTCTCATGTCAGT-GCTAA
1 TGCCATGTCCCGGACATGGTCTTATACAAGCACACATATCA-TCGCCAA
* * *
72404168 TGCCATGTCCCAGACATGGTCTTATACTAGCACACATATCATCGCCGA
1 TGCCATGTCCCGGACATGGTCTTATACAAGCACACATATCATCGCCAA
* ** * * *
72404216 TGCCATGTCCCGGACATGGTCTTACACTGGCACAGATATCATCGTCGA
1 TGCCATGTCCCGGACATGGTCTTATACAAGCACACATATCATCGCCAA
* * **
72404264 TGCCAT-TCCCTGACATGGTCTTACACTGGCACACATATCATCGCCAA
1 TGCCATGTCCCGGACATGGTCTTATACAAGCACACATATCATCGCCAA
* ** * * ** *
72404311 TGACATGTATCAGACATGGTCTTACACTGGCACACATATCATTGCCAA
1 TGCCATGTCCCGGACATGGTCTTATACAAGCACACATATCATCGCCAA
* * *** *
72404359 TGCCATATCCCAGG-CATGGTCTTACATTGGCACACATATCATCGCCGA
1 TGCCATGTCCC-GGACATGGTCTTATACAAGCACACATATCATCGCCAA
* * ** * *
72404407 TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCGA
1 TGCCATGTCCCGGACATGGTCTTATACAAGCACACATATCATCGCCAA
* *
72404455 TGTCATGTCCCAGACATGGTCTTA
1 TGCCATGTCCCGGACATGGTCTTA
72404479 CACTGGCACA
Statistics
Matches: 270, Mismatches: 37, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
47 44 0.16
48 225 0.83
49 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
TGCCATGTCCCGGACATGGTCTTATACAAGCACACATATCATCGCCAA
Found at i:72404479 original size:48 final size:48
Alignment explanation
Indices: 72404167--72404491 Score: 490
Period size: 48 Copynumber: 6.8 Consensus size: 48
72404157 GTCAGTGCTA
* *
72404167 ATGCCATGTCCCAGACATGGTCTTATACTAGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * *
72404215 ATGCCATGTCCCGGACATGGTCTTACACTGGCACAGATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
72404263 ATGCCAT-TCCCTGACATGGTCTTACACTGGCACACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* ** * *
72404310 ATGACATGTATCAGACATGGTCTTACACTGGCACACATATCATTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * *
72404358 ATGCCATATCCCAGGCATGGTCTTACATTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
*
72404406 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
*
72404454 ATGTCATGTCCCAGACATGGTCTTACACTGGCACACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACAT
72404492 TAATATGGTG
Statistics
Matches: 249, Mismatches: 27, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
47 42 0.17
48 207 0.83
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
Found at i:72406136 original size:17 final size:18
Alignment explanation
Indices: 72406084--72406130 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
72406074 ATCCTTTGAC
* * *
72406084 TTTTTTGTTCAAAAATAA
1 TTTTTTATTTAAAAATAT
72406102 TTTTTTATTTAAAAATAT
1 TTTTTTATTTAAAAATAT
72406120 TTTTTTATTTA
1 TTTTTTATTTA
72406131 TTATATCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTTTTATTTAAAAATAT
Found at i:72406801 original size:9 final size:9
Alignment explanation
Indices: 72406768--72406801 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
72406758 AATACTTAAC
72406768 AAAAAATTA
1 AAAAAATTA
*
72406777 ATAAAACTTA
1 A-AAAAATTA
72406787 AAAAAATTA
1 AAAAAATTA
72406796 AAAAAA
1 AAAAAA
72406802 ACTAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAAAATTA
Found at i:72408652 original size:16 final size:16
Alignment explanation
Indices: 72408631--72408661 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
72408621 GTCAAGAAAA
72408631 AATATTTTAAAAGACG
1 AATATTTTAAAAGACG
72408647 AATATTTTAAAAGAC
1 AATATTTTAAAAGAC
72408662 TTTCAATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (16 bp):
AATATTTTAAAAGACG
Found at i:72410167 original size:33 final size:33
Alignment explanation
Indices: 72410130--72410193 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 33
72410120 GAATAGATTA
*
72410130 CCCCCT-TAATAAAAGTCATTTTCAATTTAAGCT
1 CCCCCTAT-ATAAAAATCATTTTCAATTTAAGCT
72410163 CCCCCTATATAAAAATCATTTTCAATTTAAG
1 CCCCCTATATAAAAATCATTTTCAATTTAAG
72410194 GCATAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (33 bp):
CCCCCTATATAAAAATCATTTTCAATTTAAGCT
Found at i:72423095 original size:26 final size:28
Alignment explanation
Indices: 72423061--72423116 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 28
72423051 AATAACCAAT
72423061 TTCTGGTT-ACAACAAAAATCGAATAAA
1 TTCTGGTTAACAACAAAAATCGAATAAA
72423088 TTCT-GTTAACAACAAAAATCGAATAAA
1 TTCTGGTTAACAACAAAAATCGAATAAA
72423115 TT
1 TT
72423117 TTATTTAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (28 bp):
TTCTGGTTAACAACAAAAATCGAATAAA
Found at i:72423269 original size:78 final size:78
Alignment explanation
Indices: 72423088--72423416 Score: 301
Period size: 78 Copynumber: 4.2 Consensus size: 78
72423078 ATCGAATAAA
* * ** *
72423088 TTCTG-TTAACAACAAAAATCGAATAAATTTTATTTAAA-GACAAGAA-AAGAATCCTGAAACTG
1 TTCTGTTTAA-AACAAAAATCAAACAAATCCTA-TTAAATGACAAGAATAA-AATCCTGAAACAG
*
72423150 AATTATTCAATTGATT
63 AATTGTTCAATTGATT
* * * * ** * * *
72423166 TCTATTTTTTAAA-AAAGATTGAACAAATCCTATTAAACGGCAAGAATAAAATCCTGAAACAAAA
1 T-TCTGTTTAAAACAAAAATCAAACAAATCCTATTAAATGACAAGAATAAAATCCTGAAACAGAA
72423230 TTGTTCAATTGATT
65 TTGTTCAATTGATT
* * * *
72423244 TTCTGTTTAAAACAAAAATCAAACAAATCCTGTTAAATGGCAGGAATAAAATCCTAAAACATG-A
1 TTCTGTTTAAAACAAAAATCAAACAAATCCTATTAAATGACAAGAATAAAATCCTGAAACA-GAA
*
72423308 TTGTTTAATT-ATTT
65 TTGTTCAATTGA-TT
* * * * * *
72423322 TTCTATTTGAAACAAAAATCAAACATATCGTATTAAATGACAGGAATAAAATCTTGAAACAGAAT
1 TTCTGTTTAAAACAAAAATCAAACAAATCCTATTAAATGACAAGAATAAAATCCTGAAACAGAAT
* *
72423387 TGTTTAATTGAAT
66 TGTTCAATTGATT
*
72423400 TTCTGTTTGAAACAAAA
1 TTCTGTTTAAAACAAAA
72423417 TAAAATTTAT
Statistics
Matches: 208, Mismatches: 34, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
77 15 0.07
78 183 0.88
79 7 0.03
80 3 0.01
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.33
Consensus pattern (78 bp):
TTCTGTTTAAAACAAAAATCAAACAAATCCTATTAAATGACAAGAATAAAATCCTGAAACAGAAT
TGTTCAATTGATT
Found at i:72425784 original size:49 final size:49
Alignment explanation
Indices: 72425712--72425899 Score: 259
Period size: 49 Copynumber: 3.8 Consensus size: 49
72425702 TGAGGTCACG
*
72425712 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
72425761 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGAAAACTGTGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
*
72425812 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * *
72425861 TGTGTAGTACTAAGTTCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
72425900 GCTTCGGCTA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 76 0.64
50 2 0.02
51 41 0.34
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:72425885 original size:100 final size:100
Alignment explanation
Indices: 72425707--72425897 Score: 346
Period size: 100 Copynumber: 1.9 Consensus size: 100
72425697 CTATTTGAGG
* *
72425707 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
72425772 AAGTACAGGCTACTATGCGTACCAGAAAACTGTGA
66 AAGTACAGGCTACTATGCGTACCAGAAAACTGTGA
*
72425807 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
72425872 AAGTTCAGGCTACTATGCGTACCAGA
66 AAGTACAGGCTACTATGCGTACCAGA
72425898 TAGCTTCGGC
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTACAGGCTACTATGCGTACCAGAAAACTGTGA
Found at i:72430219 original size:27 final size:27
Alignment explanation
Indices: 72430188--72430348 Score: 214
Period size: 27 Copynumber: 6.0 Consensus size: 27
72430178 TTCTACCCTA
*
72430188 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
72430215 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
72430242 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
72430269 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
72430296 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
72430323 CAAGGGTATTTTGGTAATTCTATAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
72430349 TTGAAGGTAA
Statistics
Matches: 112, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:72430258 original size:54 final size:54
Alignment explanation
Indices: 72430191--72430341 Score: 248
Period size: 54 Copynumber: 2.8 Consensus size: 54
72430181 TACCCTACAA
* *
72430191 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
72430245 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
72430299 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
72430342 CTATAAATTG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:72430365 original size:27 final size:27
Alignment explanation
Indices: 72430334--72430584 Score: 331
Period size: 27 Copynumber: 9.3 Consensus size: 27
72430324 AAGGGTATTT
* *
72430334 TGGTAATTCTATAAATTGAAGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
72430361 CGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* * *
72430388 CGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
72430415 TAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
72430442 TGGTAATTCTGTAAATCGAGGATAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
72430469 TAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
* *
72430496 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
** *
72430523 CAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
*
72430550 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATTGAGGGTAAAA
72430577 TGGTAATT
1 TGGTAATT
72430585 TTACAAGTCG
Statistics
Matches: 193, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
TGGTAATTCTGTAAATTGAGGGTAAAA
Found at i:72430367 original size:81 final size:81
Alignment explanation
Indices: 72430199--72430368 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
72430189 AAGGGTATTT
* * * *
72430199 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
***
72430264 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
72430280 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTCTA
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
**
72430345 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
72430361 CGGTAATT
1 CGGTAATT
72430369 CTGTAAACTG
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA
TAAACCAAGGGTAAAA
Found at i:72430598 original size:54 final size:54
Alignment explanation
Indices: 72430334--72430584 Score: 403
Period size: 54 Copynumber: 4.6 Consensus size: 54
72430324 AAGGGTATTT
* * * **
72430334 TGGTAATTCTATAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
72430388 CGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
72430442 TGGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
72430496 CGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
72430550 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATT
72430585 TTACAAGTCG
Statistics
Matches: 183, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 183 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
Found at i:72439859 original size:45 final size:44
Alignment explanation
Indices: 72439731--72439878 Score: 153
Period size: 45 Copynumber: 3.4 Consensus size: 44
72439721 TGTCAACGTG
* * * *
72439731 CCAGACGTGGTCTTACATGTAATCAC-ATATCAATGCCACTATC
1 CCAGACGTGGTCTTACACGTAATCACAATATCGATGCCAATGTC
* **
72439774 CCAGACAG-GGTCTTACATG-AATCA-AATAT-GATGCTGATGTC
1 CCAGAC-GTGGTCTTACACGTAATCACAATATCGATGCCAATGTC
* *
72439815 CCATACGTGGTCTTACACGTAACCACATATATCGATGCCAATGTC
1 CCAGACGTGGTCTTACACGTAATCACA-ATATCGATGCCAATGTC
*
72439860 CCAGATGTGGTCTTACACG
1 CCAGACGTGGTCTTACACG
72439879 AGAACACATA
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
40 1 0.01
41 22 0.26
42 13 0.15
43 18 0.21
44 5 0.06
45 27 0.31
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
CCAGACGTGGTCTTACACGTAATCACAATATCGATGCCAATGTC
Found at i:72449118 original size:21 final size:22
Alignment explanation
Indices: 72449093--72449137 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
72449083 TATTTAACCC
*
72449093 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
72449114 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
72449136 AA
1 AA
72449138 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:72449301 original size:23 final size:25
Alignment explanation
Indices: 72449274--72449329 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 25
72449264 GAAAATGATC
72449274 AAATTTTAATATAA-AA-TTAATTA
1 AAATTTTAATATAATAATTTAATTA
* *
72449297 AAATTAATTATTTTAATAATTTAATTA
1 AAATT--TTAATATAATAATTTAATTA
72449324 AAATTT
1 AAATTT
72449330 AATTATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 5 0.19
25 8 0.30
26 2 0.07
27 12 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
AAATTTTAATATAATAATTTAATTA
Found at i:72449320 original size:27 final size:27
Alignment explanation
Indices: 72449290--72449344 Score: 94
Period size: 27 Copynumber: 2.0 Consensus size: 27
72449280 TAATATAAAA
72449290 TTAATTAAAA-TTAATTATTTTAATAAT
1 TTAATTAAAATTTAATTATTTT-ATAAT
72449317 TTAATTAAAATTTAATTATTTTATAAT
1 TTAATTAAAATTTAATTATTTTATAAT
72449344 T
1 T
72449345 ATTATATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 16 0.59
28 11 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
TTAATTAAAATTTAATTATTTTATAAT
Found at i:72455161 original size:40 final size:40
Alignment explanation
Indices: 72455116--72455282 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72455106 CGGAATATAA
72455116 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72455156 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
72455196 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72455236 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72455275 CCGGATAT
1 CCGGATAT
72455283 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72463164 original size:40 final size:40
Alignment explanation
Indices: 72463119--72463285 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72463109 CGGAATATAA
72463119 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72463159 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
72463199 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72463239 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72463278 CCGGATAT
1 CCGGATAT
72463286 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72467440 original size:37 final size:37
Alignment explanation
Indices: 72467362--72467702 Score: 450
Period size: 37 Copynumber: 9.1 Consensus size: 37
72467352 CTATGCTCGA
* * * *
72467362 ATATAATACCAGCACTAAGCCTGCAGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGA-TAAACCCGG
* * *
72467400 ATATAATACCAGCACGAAGCC-GCAGGATTTAACTCGG
1 ATATAATACCAGCACGAAGCCTGCGGGA-TAAACCCGG
* * ** *
72467437 ATATAATGCCAGCATGAAATCTGCGGGATAAAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGAT-AAACCCGG
*
72467475 ATATAATACCAGCATGAAGCCTGCGGGATAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
* *
72467512 ATATAATACCAGCACGAAGCCTACGGGATAAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
*
72467549 ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
* *
72467586 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGAT-AAACCCGG
* *
72467624 ATATAATATCAGCACGAAGCCTGTGGGATAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
*
72467661 ATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
72467698 ATATA
1 ATATA
72467703 CATCAAATAT
Statistics
Matches: 271, Mismatches: 29, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
37 182 0.67
38 89 0.33
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (37 bp):
ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
Found at i:72467449 original size:75 final size:75
Alignment explanation
Indices: 72467362--72467702 Score: 465
Period size: 75 Copynumber: 4.6 Consensus size: 75
72467352 CTATGCTCGA
* * *
72467362 ATATAATACCAGCACTAAGCCTGCAGGATTTAACCCAGATATAATACCAGCACGAAGCC-GCAGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTAAACCCAGATATAATACCAGCACGAAGCCTGCGGG
* *
72467426 ATTTAACTCGG
66 A-TAAACCCGG
* ** * *
72467437 ATATAATGCCAGCA-TGAAATCTGCGGGATAAAACCCAGATATAATACCAGCATGAAGCCTGCGG
1 ATATAATACCAGCACT-AAGCCTGCGGGATTAAACCCAGATATAATACCAGCACGAAGCCTGCGG
72467501 GATAAACCCGG
65 GATAAACCCGG
* * ** *
72467512 ATATAATACCAGCACGAAGCCTACGGGA-TAAACCTGGATATAATACCAGCACTAAGCCTGCGGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTAAACCCAGATATAATACCAGCACGAAGCCTGCGGG
72467576 ATAAACCCGG
66 ATAAACCCGG
* * *
72467586 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCAGATATAATATCAGCACGAAGCCTGTGGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTAAACCCAGATATAATACCAGCACGAAGCCTGCGGG
72467651 ATAAACCCGG
66 ATAAACCCGG
*
72467661 ATATAATACCAGCACTAAGCCTGCGGGA-TAAACCCGGATATA
1 ATATAATACCAGCACTAAGCCTGCGGGATTAAACCCAGATATA
72467703 CATCAAATAT
Statistics
Matches: 232, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
74 80 0.34
75 147 0.63
76 5 0.02
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (75 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTAAACCCAGATATAATACCAGCACGAAGCCTGCGGG
ATAAACCCGG
Found at i:72467555 original size:112 final size:111
Alignment explanation
Indices: 72467362--72467702 Score: 474
Period size: 112 Copynumber: 3.0 Consensus size: 111
72467352 CTATGCTCGA
* * *
72467362 ATATAATACCAGCACTAAGCCTGCAGGATTTAACCCAGATATAATACCAGCACGAAGCC-GCAGG
1 ATATAATACCAGCACTAAGCCTGCGGGA-TAAACCCAGATATAATACCAGCACGAAGCCTGCGGG
* * ** *
72467426 ATTTAA-CTCGGATATAATGCCAGCA-TGAAATCTGCGGGATAAAACCCAG
65 A-TAAACCT-GGATATAATACCAGCACT-AAGCCTGCGGGAT-AAACCCGG
* *
72467475 ATATAATACCAGCA-TGAAGCCTGCGGGATAAACCCGGATATAATACCAGCACGAAGCCTACGGG
1 ATATAATACCAGCACT-AAGCCTGCGGGATAAACCCAGATATAATACCAGCACGAAGCCTGCGGG
72467539 ATAAACCTGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
65 ATAAACCTGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
* *
72467586 ATATAATACCAGCACTAAGCCTGCGGGATAAAACCCAGATATAATATCAGCACGAAGCCTGTGGG
1 ATATAATACCAGCACTAAGCCTGCGGGAT-AAACCCAGATATAATACCAGCACGAAGCCTGCGGG
*
72467651 ATAAACCCGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
65 ATAAACCTGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
72467698 ATATA
1 ATATA
72467703 CATCAAATAT
Statistics
Matches: 207, Mismatches: 15, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
111 34 0.16
112 141 0.68
113 32 0.15
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (111 bp):
ATATAATACCAGCACTAAGCCTGCGGGATAAACCCAGATATAATACCAGCACGAAGCCTGCGGGA
TAAACCTGGATATAATACCAGCACTAAGCCTGCGGGATAAACCCGG
Found at i:72470978 original size:27 final size:27
Alignment explanation
Indices: 72470948--72471002 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
72470938 TATTATAAAA
72470948 TTAATTAAAATTAAA-TATTTTAATAAT
1 TTAATTAAAATTAAATTATTTT-ATAAT
*
72470975 TTAATTACAATTAAATTATTTTATAAT
1 TTAATTAAAATTAAATTATTTTATAAT
72471002 T
1 T
72471003 ATTATATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
TTAATTAAAATTAAATTATTTTATAAT
Found at i:72484187 original size:40 final size:40
Alignment explanation
Indices: 72484117--72484333 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
72484107 AAACCAAGTA
* * *
72484117 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCATATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
72484156 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72484196 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72484236 CCTTCGGGACTTAGCTCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72484276 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72484316 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
72484334 ATTACCACCC
Statistics
Matches: 165, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 150 0.91
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72485566 original size:21 final size:21
Alignment explanation
Indices: 72485536--72485581 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
72485526 CTTACCTTAA
72485536 TATTAACCTTATTATTTCTTT
1 TATTAACCTTATTATTTCTTT
*
72485557 TATTATCCTTATTATTTCTTT
1 TATTAACCTTATTATTTCTTT
72485578 TATT
1 TATT
72485582 TATTTCCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.13, G:0.00, T:0.65
Consensus pattern (21 bp):
TATTAACCTTATTATTTCTTT
Found at i:72492170 original size:40 final size:40
Alignment explanation
Indices: 72492100--72492313 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
72492090 AAACCAAGTA
* *
72492100 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
72492139 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72492179 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72492219 CCTTC--GACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72492257 CCTTCGGGACTTAG-CCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72492296 CCTTCGGG-CTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72492314 TTACCATCCG
Statistics
Matches: 164, Mismatches: 5, Indels: 12
0.91 0.03 0.07
Matches are distributed among these distances:
38 43 0.26
39 47 0.29
40 74 0.45
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72492252 original size:78 final size:77
Alignment explanation
Indices: 72492100--72492313 Score: 315
Period size: 78 Copynumber: 2.7 Consensus size: 77
72492090 AAACCAAGTA
* *
72492100 CCTTCGGGATTTAGCCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAG-TACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATAGT
72492165 AACTCGCACAAATG
64 AACTCGCACAAATG
72492179 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAG-CCGGATATAGT-ACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGT
*
72492243 AACTTGCACAAATG
64 AACTCGCACAAATG
* *
72492257 CCTTCGGGACTTAGCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGACTTAGCCCGG
72492314 TTACCATCCG
Statistics
Matches: 125, Mismatches: 6, Indels: 9
0.89 0.04 0.06
Matches are distributed among these distances:
76 1 0.01
77 26 0.21
78 57 0.46
79 14 0.11
80 27 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (77 bp):
CCTTCGGGACTTAGCCGGATATAGTACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGTAA
CTCGCACAAATG
Found at i:72495854 original size:40 final size:40
Alignment explanation
Indices: 72495775--72495992 Score: 336
Period size: 40 Copynumber: 5.5 Consensus size: 40
72495765 ACCCAAGTTT
* * * * *
72495775 CTTCGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
72495813 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
72495853 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
72495893 CTTCGGGTCTTAGCCCGGAT-TAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
72495932 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
72495972 CTTCGGG-CTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
72495993 CATTCAAATG
Statistics
Matches: 166, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 7 0.04
39 56 0.34
40 103 0.62
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:72495937 original size:79 final size:79
Alignment explanation
Indices: 72495775--72495990 Score: 330
Period size: 79 Copynumber: 2.8 Consensus size: 79
72495765 ACCCAAGTTT
* * * * * * * *
72495775 CTTCGGAT-TTAG-CCGGATATAACCACACGCCCAATTGCCTTCGGGTCTTAACCCGGACATAGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA-TTAAC
72495838 AACTCGCACAAATGC
65 AACTCGCACAAATGC
72495853 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATTAACA
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATTAACA
72495918 ACTCGCACAAATGC
66 ACTCGCACAAATGC
72495932 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAT
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGAT
72495991 ATCATTCAAA
Statistics
Matches: 128, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
78 19 0.15
79 69 0.54
80 40 0.31
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATTAACA
ACTCGCACAAATGC
Found at i:72499031 original size:33 final size:35
Alignment explanation
Indices: 72498992--72499072 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 35
72498982 GCCTAAGGCC
*
72498992 ATTCAGATAACAGTCATACTGGGCCAGAG-CCCTT
1 ATTCAGATAACAGTCAAACTGGGCCAGAGCCCCTT
* * **
72499026 -TTCAGATTACA-TTAAACTGGGCCTTAGCCCCTT
1 ATTCAGATAACAGTCAAACTGGGCCAGAGCCCCTT
72499059 ATTCAGATAACAGT
1 ATTCAGATAACAGT
72499073 ATGGCCCATA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
32 12 0.32
33 15 0.39
34 10 0.26
35 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (35 bp):
ATTCAGATAACAGTCAAACTGGGCCAGAGCCCCTT
Found at i:72501305 original size:40 final size:40
Alignment explanation
Indices: 72501260--72501426 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72501250 CGGAATATAA
72501260 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72501300 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72501340 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72501380 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72501419 CCGGATAT
1 CCGGATAT
72501427 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72501410 original size:80 final size:79
Alignment explanation
Indices: 72501260--72501426 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
72501250 CGGAATATAA
* *
72501260 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
72501325 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
72501340 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
72501402 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
72501419 CCGGATAT
1 CCGGATAT
72501427 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:72507739 original size:22 final size:21
Alignment explanation
Indices: 72507696--72507740 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
72507686 AATTAGCCGA
*
72507696 AATTAAAAACTGTAAAATAAT
1 AATTAAAAACTGTAAAAAAAT
72507717 AATTATAAAACT-TAATAAAAAT
1 AATTA-AAAACTGTAA-AAAAAT
72507739 AA
1 AA
72507741 GGCGAAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (21 bp):
AATTAAAAACTGTAAAAAAAT
Found at i:72522121 original size:25 final size:25
Alignment explanation
Indices: 72522076--72522147 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
72522066 CAGGCCTATT
* * * *
72522076 TTCACAACTTGTGTGAGCATATCGG
1 TTCACAGCTCGTGTGAGCATACCGA
* *
72522101 TTTACAGCTCGTGTGATCATACCGA
1 TTCACAGCTCGTGTGAGCATACCGA
*
72522126 TTCACAGCTTGTGTGAGCATAC
1 TTCACAGCTCGTGTGAGCATAC
72522148 ATGTACAGGA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATACCGA
Found at i:72525344 original size:40 final size:40
Alignment explanation
Indices: 72525289--72525406 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
72525279 GGAAAAAAAA
*
72525289 TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
72525329 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
72525369 TATAACCGGGTTAATTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
72525407 GTTACATCCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:72529036 original size:10 final size:10
Alignment explanation
Indices: 72529019--72529062 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
72529009 GATACTGTTT
72529019 TATA-CATGA
1 TATACCATGA
72529028 TATACCATGA
1 TATACCATGA
*
72529038 TATGCACATGA
1 TATAC-CATGA
*
72529049 TATGCCATGA
1 TATACCATGA
72529059 TATA
1 TATA
72529063 TTCATATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
9 4 0.13
10 17 0.55
11 10 0.32
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (10 bp):
TATACCATGA
Found at i:72529046 original size:21 final size:21
Alignment explanation
Indices: 72529022--72529061 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
72529012 ACTGTTTTAT
72529022 ACATGATATACCATGATATGC
1 ACATGATATACCATGATATGC
*
72529043 ACATGATATGCCATGATAT
1 ACATGATATACCATGATAT
72529062 ATTCATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATGATATACCATGATATGC
Found at i:72529143 original size:25 final size:25
Alignment explanation
Indices: 72529107--72529171 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
72529097 GAAGAAGTGC
* *
72529107 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAATTTACCA
* *
72529132 AAAAGGGTTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAATTTACCA
*
72529157 AAAAGGGCTTCGCCC
1 AAAAGGGCTTTGCCC
72529172 TAGTTATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAATTTACCA
Found at i:72537820 original size:20 final size:20
Alignment explanation
Indices: 72537795--72537853 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
72537785 TAAATATGGT
*
72537795 ATGTATGATATACACATGAA
1 ATGTATGATATGCACATGAA
*
72537815 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
72537835 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72537854 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72537931 original size:24 final size:24
Alignment explanation
Indices: 72537904--72538046 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
72537894 GAGGAAGTGA
72537904 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72537928 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72537952 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
72537975 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
72537999 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
72538023 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72538047 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:72537997 original size:47 final size:47
Alignment explanation
Indices: 72537904--72538046 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
72537894 GAGGAAGTGA
72537904 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
72537952 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
72537999 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
72538047 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:72538020 original size:71 final size:72
Alignment explanation
Indices: 72537904--72538047 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
72537894 GAGGAAGTGA
*
72537904 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
72537967 CCAGTTAT
65 CCAGTTAT
** * *
72537975 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
72538040 CAGTTAT
66 CAGTTAT
72538047 A
1 A
72538048 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:72538273 original size:31 final size:31
Alignment explanation
Indices: 72538238--72538332 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
72538228 CGTTTACAGT
72538238 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72538269 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
72538300 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72538331 AA
1 AA
72538333 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72542594 original size:14 final size:14
Alignment explanation
Indices: 72542575--72542619 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
72542565 TAAATACCTG
72542575 AAAAATAAATCACA
1 AAAAATAAATCACA
* *
72542589 AAAAATAAATAATA
1 AAAAATAAATCACA
*
72542603 AATAATAAATCAGCA
1 AAAAATAAATCA-CA
72542618 AA
1 AA
72542620 TTTAAGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 22 0.88
15 3 0.12
ACGTcount: A:0.71, C:0.09, G:0.02, T:0.18
Consensus pattern (14 bp):
AAAAATAAATCACA
Found at i:72545821 original size:51 final size:50
Alignment explanation
Indices: 72545739--72545924 Score: 149
Period size: 50 Copynumber: 3.6 Consensus size: 50
72545729 CCGTCTCTTC
* * * * ** *
72545739 CACATAGTGGCCTACACTTAGTACCACACATGTGATGGAAGCTAT-TGGGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAA-CCATCT-GGTA
* * *
72545790 CGCATAGTAGCCTGCACTTAGTACTATACATGCGACCTAACCATCTGGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAACCATCTGGTA
* * * * ***
72545840 CACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAAAAACCATTTTAAA
1 CACATAGTAGCCTGCACTTAGTACTACACATGCGACC---GAACCATCTGGTA
* *
72545893 CACACAGTAGCCTGCACATAGTACTACACATG
1 CACATAGTAGCCTGCACTTAGTACTACACATG
72545925 TGATCTTACA
Statistics
Matches: 108, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 40 0.37
51 32 0.30
53 36 0.33
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (50 bp):
CACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAACCATCTGGTA
Found at i:72549170 original size:42 final size:42
Alignment explanation
Indices: 72549113--72549278 Score: 138
Period size: 42 Copynumber: 3.9 Consensus size: 42
72549103 TAGGGTTATG
* *
72549113 TGTGATTTCGTGTAAGACCATATTTGGGATATGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* *
72549155 TGTGATTTCATGTAAGACCATGTCTGGAATATGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * ** * ** *
72549197 CGGGACATCGTCCAAGACCATAGT-TGGGCTATCGGCATCGATATA
1 TGTGATTTCATGTAAGACCATA-TCTGGGATAT-GGCATCG--ATA
* * *
72549242 TGTGA-TCCTATGGAAGACCATATCTAGGATATGGCAT
1 TGTGATTTC-ATGTAAGACCATATCTGGGATATGGCAT
72549279 TGGCATCTTA
Statistics
Matches: 95, Mismatches: 23, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
42 58 0.61
43 8 0.08
44 7 0.07
45 22 0.23
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:72550779 original size:40 final size:40
Alignment explanation
Indices: 72550734--72550941 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
72550724 CGGAATACAA
*
72550734 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
72550774 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* **
72550814 CCGGATTTAATAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
72550854 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** ** *
72550894 CCGGATATAATTACTAGCATAAATATCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
72550934 CCGGATAT
1 CCGGATAT
72550942 CATTCAATTG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:72550874 original size:80 final size:81
Alignment explanation
Indices: 72550734--72550939 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
72550724 CGGAATACAA
** * *
72550734 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAATAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
72550798 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
72550814 CCGGATTTAATAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAATAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
72550877 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** ** *
72550894 CCGGATATAATTACTAGCATAAATATCTTCGGGACTTAGCCCGGAT
1 CCGGATATAATAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72550940 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 103 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATATAATAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:72559436 original size:40 final size:39
Alignment explanation
Indices: 72559391--72559598 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
72559381 CGGAATACAA
*
72559391 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72559431 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72559471 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
72559511 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
72559551 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72559591 CCGGATAT
1 CCGGATAT
72559599 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72559531 original size:80 final size:81
Alignment explanation
Indices: 72559391--72559596 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
72559381 CGGAATACAA
* * *
72559391 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
72559455 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
72559471 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
72559534 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
72559551 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72559597 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:72567498 original size:40 final size:39
Alignment explanation
Indices: 72567453--72567660 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
72567443 CGGAATACAA
*
72567453 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72567493 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72567533 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
72567573 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
72567613 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72567653 CCGGATAT
1 CCGGATAT
72567661 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72567593 original size:80 final size:81
Alignment explanation
Indices: 72567453--72567658 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
72567443 CGGAATACAA
* * *
72567453 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
72567517 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
72567533 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
72567596 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
72567613 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72567659 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:72576325 original size:11 final size:11
Alignment explanation
Indices: 72576309--72576335 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
72576299 AAGATGAGCA
72576309 TTCTTTTTTTT
1 TTCTTTTTTTT
72576320 TTCTTTTTTTT
1 TTCTTTTTTTT
72576331 TTCTT
1 TTCTT
72576336 CCTTTACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TTCTTTTTTTT
Found at i:72577937 original size:44 final size:43
Alignment explanation
Indices: 72577887--72578010 Score: 144
Period size: 44 Copynumber: 2.9 Consensus size: 43
72577877 TACCGAGATT
* *
72577887 TGATTACATGTAAGACCATGTCTGGGACATTGGCAT--TTGTA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATA
* *
72577928 TTGTAATTACGTGTAAGACCATGTCTCGGATATTGGCATCATTATA
1 -TG--ATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATA
* * *
72577974 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATC
72578011 GATATGTGAC
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 2 0.03
43 30 0.43
44 31 0.45
45 2 0.03
46 4 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATA
Found at i:72578996 original size:40 final size:41
Alignment explanation
Indices: 72578951--72579080 Score: 146
Period size: 40 Copynumber: 3.2 Consensus size: 41
72578941 CGGAATACAA
72578951 CCGGATATAAGCACAT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACATAGCACGAATGCCTTCGGGTCTTAGC
* *
72578991 CCGGATAGAATG-AC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACATAGCACGAATGCCTTCGGGTCTTAGC
* *
72579031 CCGGATGT-AGC-CACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCACA-TAGCACGAA-TGCCTTCGGGTCTTAGC
*
72579071 CTGGATATAA
1 CCGGATATAA
72579081 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
38 2 0.03
39 4 0.05
40 68 0.89
41 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (41 bp):
CCGGATATAAGCACATAGCACGAATGCCTTCGGGTCTTAGC
Found at i:72585388 original size:40 final size:40
Alignment explanation
Indices: 72585343--72585510 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
72585333 CGGAATACAA
72585343 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
72585383 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
72585423 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
72585463 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
72585503 CCGGATAT
1 CCGGATAT
72585511 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:72591617 original size:40 final size:40
Alignment explanation
Indices: 72591558--72591744 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
72591548 CATTGGAATG
* * * *
72591558 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
72591598 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
72591638 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
72591678 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
72591718 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
72591745 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:72591660 original size:80 final size:80
Alignment explanation
Indices: 72591558--72591711 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
72591548 CATTGGAATG
* * ** *
72591558 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
72591623 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
72591638 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
72591703 ATCGTGCGA
66 ATCGTGCGA
72591712 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:72591726 original size:80 final size:80
Alignment explanation
Indices: 72591562--72591744 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
72591552 GGAATGATAT
* ** * *
72591562 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
72591627 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
72591642 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
72591707 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
72591722 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
72591745 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:72591764 original size:80 final size:80
Alignment explanation
Indices: 72591562--72591779 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
72591552 GGAATGATAT
* * * * * * * *
72591562 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
72591626 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
72591642 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
72591707 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
72591722 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
72591780 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:72599639 original size:40 final size:40
Alignment explanation
Indices: 72599580--72599766 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
72599570 CATTGGAATG
* * * *
72599580 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
72599620 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
72599660 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
72599700 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
72599740 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
72599767 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:72599682 original size:80 final size:80
Alignment explanation
Indices: 72599580--72599733 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
72599570 CATTGGAATG
* * ** *
72599580 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
72599645 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
72599660 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
72599725 ATCGTGCGA
66 ATCGTGCGA
72599734 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:72599748 original size:80 final size:80
Alignment explanation
Indices: 72599584--72599766 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
72599574 GGAATGATAT
* ** * *
72599584 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
72599649 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
72599664 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
72599729 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
72599744 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
72599767 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:72599786 original size:80 final size:80
Alignment explanation
Indices: 72599584--72599801 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
72599574 GGAATGATAT
* * * * * * * *
72599584 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
72599648 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
72599664 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
72599729 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
72599744 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
72599802 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:72602964 original size:15 final size:15
Alignment explanation
Indices: 72602944--72602977 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
72602934 CTCGGATGAA
*
72602944 CAAAAATGGTACATC
1 CAAAAATGGAACATC
72602959 CAAAAATGGAACATC
1 CAAAAATGGAACATC
72602974 CAAA
1 CAAA
72602978 CATCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.21, G:0.12, T:0.15
Consensus pattern (15 bp):
CAAAAATGGAACATC
Found at i:72603060 original size:16 final size:16
Alignment explanation
Indices: 72603039--72603071 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
72603029 TATAATTTAA
72603039 TCAATTAATTCAATAG
1 TCAATTAATTCAATAG
*
72603055 TCAATTAATTTAATAG
1 TCAATTAATTCAATAG
72603071 T
1 T
72603072 TAAAATGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (16 bp):
TCAATTAATTCAATAG
Found at i:72604132 original size:16 final size:16
Alignment explanation
Indices: 72604108--72604142 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
72604098 CAAAAGATAG
*
72604108 ATATAGGCATTCATAC
1 ATATAGGCATTCACAC
*
72604124 ATATCGGCATTCACAC
1 ATATAGGCATTCACAC
72604140 ATA
1 ATA
72604143 AAATGAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (16 bp):
ATATAGGCATTCACAC
Found at i:72606622 original size:43 final size:44
Alignment explanation
Indices: 72606574--72606660 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 44
72606564 ATGCAAAGAA
**
72606574 TTGGGGAAATGTGTTTTGGGGTTTT-GTTAAAATGGCTAAGTGT
1 TTGGGGAAATGTGTTTTGGGGTTTTGGGGAAAATGGCTAAGTGT
* *
72606617 TTGGGGAAATTTGTTTTGGGGTTTTGGGGGAAATGGCTAAGTGT
1 TTGGGGAAATGTGTTTTGGGGTTTTGGGGAAAATGGCTAAGTGT
72606661 CAGGCATGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 24 0.62
44 15 0.38
ACGTcount: A:0.20, C:0.02, G:0.38, T:0.40
Consensus pattern (44 bp):
TTGGGGAAATGTGTTTTGGGGTTTTGGGGAAAATGGCTAAGTGT
Found at i:72607027 original size:8 final size:7
Alignment explanation
Indices: 72606992--72607281 Score: 63
Period size: 7 Copynumber: 40.1 Consensus size: 7
72606982 ACTAATTAAT
72606992 CTAAACC
1 CTAAACC
72606999 CTAAACC
1 CTAAACC
*
72607006 TCTAACCC
1 -CTAAACC
72607014 CT--ACC
1 CTAAACC
72607019 CTTAAACC
1 C-TAAACC
*
72607027 CTAAACT
1 CTAAACC
72607034 CTAAACC
1 CTAAACC
*
72607041 C-ATAGCC
1 CTA-AACC
***
72607048 CATGTGCC
1 C-TAAACC
* *
72607056 TTTAACC
1 CTAAACC
72607063 CTTAAACC
1 C-TAAACC
72607071 CTAAACC
1 CTAAACC
*
72607078 CTTAACCC
1 C-TAAACC
*
72607086 CTAACCC
1 CTAAACC
72607093 CT-AACC
1 CTAAACC
*
72607099 ACTAAACT
1 -CTAAACC
*
72607107 TTAAACC
1 CTAAACC
*
72607114 CATAATCC
1 C-TAAACC
72607122 CTAAACC
1 CTAAACC
*
72607129 CATAATCC
1 C-TAAACC
*
72607137 ATAAACC
1 CTAAACC
* **
72607144 TTAAAAT
1 CTAAACC
* *
72607151 ATTAACTC
1 CTAAAC-C
* *
72607159 ATAAACT
1 CTAAACC
*
72607166 ATAAAACC
1 CT-AAACC
* *
72607174 TTAACCCC
1 CTAA-ACC
**
72607182 CTATCCC
1 CTAAACC
*
72607189 CTTAACC
1 CTAAACC
**
72607196 CTATCCC
1 CTAAACC
*
72607203 CTTAACCC
1 C-TAAACC
*
72607211 CTAACCC
1 CTAAACC
*
72607218 CTAACCC
1 CTAAACC
72607225 CT-AACC
1 CTAAACC
72607231 ACT-AACC
1 -CTAAACC
*
72607238 ACTAACCC
1 -CTAAACC
72607246 CTAAACC
1 CTAAACC
* *
72607253 TTAAACT
1 CTAAACC
72607260 CT-AACC
1 CTAAACC
72607266 CTTAAACC
1 C-TAAACC
72607274 CTAAACC
1 CTAAACC
72607281 C
1 C
72607282 ATACTTACTA
Statistics
Matches: 210, Mismatches: 52, Indels: 42
0.69 0.17 0.14
Matches are distributed among these distances:
5 3 0.01
6 12 0.06
7 128 0.61
8 67 0.32
ACGTcount: A:0.36, C:0.40, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:72607038 original size:14 final size:14
Alignment explanation
Indices: 72606991--72607041 Score: 59
Period size: 13 Copynumber: 3.6 Consensus size: 14
72606981 TACTAATTAA
72606991 TCTAAACCCTAAACC
1 TCTAAACCCTAAA-C
* **
72607006 TCTAACCCCTACCC
1 TCTAAACCCTAAAC
72607020 T-TAAACCCTAAAC
1 TCTAAACCCTAAAC
72607033 TCTAAACCC
1 TCTAAACCC
72607042 ATAGCCCATG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
13 10 0.34
14 9 0.31
15 10 0.34
ACGTcount: A:0.35, C:0.43, G:0.00, T:0.22
Consensus pattern (14 bp):
TCTAAACCCTAAAC
Found at i:72607079 original size:15 final size:15
Alignment explanation
Indices: 72607059--72607129 Score: 60
Period size: 15 Copynumber: 4.9 Consensus size: 15
72607049 ATGTGCCTTT
72607059 AACCCTTAAACCCTA
1 AACCCTTAAACCCTA
*
72607074 AACCCTTAACCCCT-
1 AACCCTTAAACCCTA
*
72607088 AACCCCT-AACCACTA
1 AACCCTTAAACC-CTA
*
72607103 AA-CTTTAAACCCATA
1 AACCCTTAAACCC-TA
*
72607118 ATCCC-TAAACCC
1 AACCCTTAAACCC
72607130 ATAATCCATA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
13 3 0.07
14 11 0.25
15 29 0.66
16 1 0.02
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.20
Consensus pattern (15 bp):
AACCCTTAAACCCTA
Found at i:72607082 original size:22 final size:22
Alignment explanation
Indices: 72607057--72607147 Score: 62
Period size: 22 Copynumber: 4.2 Consensus size: 22
72607047 CCATGTGCCT
72607057 TTAACCCTTAAACCCTAAACCC
1 TTAACCCTTAAACCCTAAACCC
* *
72607079 TTAACCCCTAACCCCT-AACCAC
1 TTAACCCTTAAACCCTAAACC-C
* * *
72607101 -TAAACTTTAAACCCATAATCCC
1 TTAACCCTTAAACCC-TAAACCC
* * * *
72607123 TAAACCCATAATCCATAAA-CC
1 TTAACCCTTAAACCCTAAACCC
72607144 TTAA
1 TTAA
72607148 AATATTAACT
Statistics
Matches: 50, Mismatches: 15, Indels: 9
0.68 0.20 0.12
Matches are distributed among these distances:
21 19 0.38
22 20 0.40
23 11 0.22
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (22 bp):
TTAACCCTTAAACCCTAAACCC
Found at i:72607130 original size:15 final size:15
Alignment explanation
Indices: 72607108--72607143 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
72607098 CACTAAACTT
*
72607108 TAAACCCATAATCCC
1 TAAACCCATAATCCA
72607123 TAAACCCATAATCCA
1 TAAACCCATAATCCA
72607138 TAAACC
1 TAAACC
72607144 TTAAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:72607225 original size:14 final size:14
Alignment explanation
Indices: 72607179--72607277 Score: 83
Period size: 14 Copynumber: 7.0 Consensus size: 14
72607169 AAACCTTAAC
*
72607179 CCCCTATCCCCTTAA
1 CCCCTAACCCC-TAA
*
72607194 -CCCTATCCCCTTAA
1 CCCCTAACCCC-TAA
72607208 CCCCTAACCCCTAA
1 CCCCTAACCCCTAA
*
72607222 CCCCTAACCACTAA
1 CCCCTAACCCCTAA
*
72607236 CCACTAACCCCTAA
1 CCCCTAACCCCTAA
* * * *
72607250 ACCTTAAACTCTAA
1 CCCCTAACCCCTAA
* *
72607264 CCCTTAAACCCTAA
1 CCCCTAACCCCTAA
72607278 ACCCATACTT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
14 63 0.88
15 9 0.12
ACGTcount: A:0.31, C:0.47, G:0.00, T:0.21
Consensus pattern (14 bp):
CCCCTAACCCCTAA
Found at i:72607229 original size:21 final size:21
Alignment explanation
Indices: 72607179--72607277 Score: 83
Period size: 21 Copynumber: 4.7 Consensus size: 21
72607169 AAACCTTAAC
* *
72607179 CCCCTATCCCCTTAA-CCCTAT
1 CCCCTAACCCC-TAACCCCTAA
72607200 CCCCTTAACCCCTAACCCCTAA
1 CCCC-TAACCCCTAACCCCTAA
* *
72607222 CCCCTAACCACTAACCACTAA
1 CCCCTAACCCCTAACCCCTAA
* * * *
72607243 CCCCTAAACCTTAAACTCTAA
1 CCCCTAACCCCTAACCCCTAA
* *
72607264 CCCTTAAACCCTAA
1 CCCCTAACCCCTAA
72607278 ACCCATACTT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
21 50 0.77
22 15 0.23
ACGTcount: A:0.31, C:0.47, G:0.00, T:0.21
Consensus pattern (21 bp):
CCCCTAACCCCTAACCCCTAA
Found at i:72607498 original size:29 final size:29
Alignment explanation
Indices: 72607463--72607531 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
72607453 AGCTTTAAAA
72607463 TTATTTTAAATAATAGTATTTTTAT-T-TT
1 TTATTTTAAATAATA-TATTTTTATATGTT
* *
72607491 TTCATTTTTAA-CATATATTTTTATATGTT
1 TT-ATTTTAAATAATATATTTTTATATGTT
72607520 TTATTTTCAAAT
1 TTATTTT-AAAT
72607532 TTTTTCTACG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
27 9 0.27
28 11 0.33
29 13 0.39
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (29 bp):
TTATTTTAAATAATATATTTTTATATGTT
Found at i:72607730 original size:40 final size:39
Alignment explanation
Indices: 72607686--72607867 Score: 193
Period size: 40 Copynumber: 4.5 Consensus size: 39
72607676 TAGCGACGCA
72607686 TTTTAAAAACACCGCTAATGCTCGATCTATAGCGGTGCTT
1 TTTTAAAAACACCGCTAATGCTCGATCTATAGCGGTG-TT
* *
72607726 TTTTAAAAAACGCCGCTAATGCTCGATCTATAGCGGCGTT
1 TTTT-AAAAACACCGCTAATGCTCGATCTATAGCGGTGTT
* * * * * *
72607766 TTTAAAAAAGTACTGCTAATTCTTGATCTATAGTGGTGTT
1 TTTTAAAAA-CACCGCTAATGCTCGATCTATAGCGGTGTT
* * * **
72607806 TTTAAAAAAGCGCCGCTAATGCTCGATCTATAGTGGCATT
1 TTTTAAAAA-CACCGCTAATGCTCGATCTATAGCGGTGTT
*
72607846 TTTTAAAAAACACAGCTAATGC
1 TTTT-AAAAACACCGCTAATGC
72607868 CACTAAGGCT
Statistics
Matches: 119, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 5 0.04
40 78 0.66
41 36 0.30
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (39 bp):
TTTTAAAAACACCGCTAATGCTCGATCTATAGCGGTGTT
Found at i:72607808 original size:80 final size:82
Alignment explanation
Indices: 72607699--72607855 Score: 239
Period size: 81 Copynumber: 1.9 Consensus size: 82
72607689 TAAAAACACC
72607699 GCTAATGCTCGATCTATAGCGGTGCTTTTTTAAAAAA-CGCCGCTAATGCTCGATCTATAGCGGC
1 GCTAATGCTCGATCTATAGCGGTGC-TTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
72607763 -GTTTTTAAAAAAGTACT
65 AGTTTTTAAAAAAGTACT
* * * *
72607780 GCTAATTCTTGATCTATAGTGGTG-TTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGTGGCA
1 GCTAATGCTCGATCTATAGCGGTGCTTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
*
72607844 TTTTTTAAAAAA
66 GTTTTTAAAAAA
72607856 CACAGCTAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
79 11 0.16
80 26 0.38
81 32 0.46
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (82 bp):
GCTAATGCTCGATCTATAGCGGTGCTTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCA
GTTTTTAAAAAAGTACT
Found at i:72607864 original size:80 final size:79
Alignment explanation
Indices: 72607686--72607867 Score: 242
Period size: 80 Copynumber: 2.3 Consensus size: 79
72607676 TAGCGACGCA
*
72607686 TTTT-AAAAACACCGCTAATGCTCGATCTATAGCGGTGCTTTTTTAAAAAACGCCGCTAATGCTC
1 TTTTAAAAAACACAGCTAATGCTCGATCTATAGCGGTGC-TTTTTAAAAAACGCCGCTAATGCTC
72607750 GATCTATAGCGGCGT
65 GATCTATAGCGGCGT
* * * * *
72607765 TTTTAAAAAAGTACTGCTAATTCTTGATCTATAGTGGTG-TTTTTAAAAAAGCGCCGCTAATGCT
1 TTTTAAAAAA-CACAGCTAATGCTCGATCTATAGCGGTGCTTTTTAAAAAA-CGCCGCTAATGCT
* *
72607829 CGATCTATAGTGGCATT
64 CGATCTATAGCGGC-GT
72607846 TTTTAAAAAACACAGCTAATGC
1 TTTTAAAAAACACAGCTAATGC
72607868 CACTAAGGCT
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
79 15 0.17
80 40 0.45
81 34 0.38
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (79 bp):
TTTTAAAAAACACAGCTAATGCTCGATCTATAGCGGTGCTTTTTAAAAAACGCCGCTAATGCTCG
ATCTATAGCGGCGT
Found at i:72615153 original size:24 final size:25
Alignment explanation
Indices: 72615126--72615174 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
72615116 CATTAATACA
* *
72615126 CCAACTTACAACTAT-CCAAAATAG
1 CCAACTCACAACCATACCAAAATAG
*
72615150 CCAACTCATAACCATACCAAAATAG
1 CCAACTCACAACCATACCAAAATAG
72615175 GCCAGCATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.47, C:0.31, G:0.04, T:0.18
Consensus pattern (25 bp):
CCAACTCACAACCATACCAAAATAG
Found at i:72615638 original size:24 final size:24
Alignment explanation
Indices: 72615572--72615645 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
72615562 AAGTCTGTCT
* *
72615572 GGAGAAGATTTAGGAGCTCATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
72615596 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
72615620 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
72615644 GG
1 GG
72615646 TGAACTGTGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.31, C:0.07, G:0.41, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:72617166 original size:28 final size:26
Alignment explanation
Indices: 72617076--72617184 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
72617066 AAGCGTCCTA
* *
72617076 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGTTCTG
72617103 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGTTCTG
* *
72617130 GTGGTTCTGCCACGATTATTTGTGTCTG
1 GTGGCTCTGCCAC-ATTATCTGT-TCTG
* * *
72617158 GTGACTCTGTCACATTATCGGTTCTG
1 GTGGCTCTGCCACATTATCTGTTCTG
72617184 G
1 G
72617185 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 47 0.67
28 16 0.23
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGTTCTG
Found at i:72623507 original size:24 final size:24
Alignment explanation
Indices: 72623441--72623514 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
72623431 AAGTCTGTTT
* *
72623441 GGAGAAGATTTAGGAGCTCATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
72623465 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
72623489 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
72623513 GG
1 GG
72623515 TGAACTGTGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.31, C:0.07, G:0.41, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:72626657 original size:40 final size:40
Alignment explanation
Indices: 72626598--72626805 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
72626588 CAATTGAATG
* * * *
72626598 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
72626638 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72626678 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72626718 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72626758 CTATCCGGGCTAAGACCCGAAGGCATTAGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72626798 ATATCCGG
1 ATATCCGG
72626806 TTGTATTTCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72626736 original size:80 final size:80
Alignment explanation
Indices: 72626599--72626805 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
72626589 AATTGAATGA
* * * * *
72626599 TATCCGGGCTAAGTCCCGAAGACATTTA-TGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCA-TTAGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
*
72626663 ATTGTGCTAGT-G-AC
65 ATTGTGCAAGTCGTAC
* * * *
72626677 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTAGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
72626742 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
72626759 TATCCGGGCTAAGACCCGAAGGCATTAGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTAGTGCAAGTAGTTATATCCGG
72626806 TTGTATTTCG
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 2 0.02
80 102 0.94
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTAGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:72628369 original size:27 final size:26
Alignment explanation
Indices: 72628294--72628404 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
72628284 AGGAAGCGTC
* *
72628294 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
72628321 CTGGTGGCT-TGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
72628347 CTGGTGGTTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCA-CATTATCTGT-T
* * *
72628375 TTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
72628401 CTGG
1 CTGG
72628405 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.03
26 25 0.35
27 30 0.42
28 14 0.20
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:72632766 original size:27 final size:28
Alignment explanation
Indices: 72632710--72632779 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
72632700 AAAATTGTAC
72632710 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72632738 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72632765 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72632780 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72632790 original size:27 final size:27
Alignment explanation
Indices: 72632710--72632791 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
72632700 AAAATTGTAC
* *
72632710 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
72632738 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
72632765 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
72632792 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:72640357 original size:27 final size:28
Alignment explanation
Indices: 72640301--72640370 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
72640291 AAACTTGTAC
72640301 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72640329 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
72640356 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72640371 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72640381 original size:27 final size:27
Alignment explanation
Indices: 72640301--72640382 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
72640291 AAACTTGTAC
* *
72640301 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
72640329 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
72640356 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
72640383 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:72642552 original size:31 final size:31
Alignment explanation
Indices: 72642514--72642577 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
72642504 CCTTTTCATA
72642514 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
72642545 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
72642576 TT
1 TT
72642578 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:72642819 original size:24 final size:24
Alignment explanation
Indices: 72642768--72642910 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
72642758 GCTTTATCAT
*
72642768 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
72642793 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
72642817 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
72642840 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72642864 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
72642888 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72642911 CACTTCCTCC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72642847 original size:47 final size:48
Alignment explanation
Indices: 72642768--72642909 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
72642758 GCTTTATCAT
* *
72642768 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
72642817 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
72642864 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
72642910 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:72642868 original size:71 final size:72
Alignment explanation
Indices: 72642767--72642910 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
72642757 TGCTTTATCA
*
72642767 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
72642832 GCCCTTT
66 GCCCTTT
* * **
72642839 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
72642902 AGCCCTTT
65 AGCCCTTT
72642910 T
1 T
72642911 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:72642982 original size:20 final size:20
Alignment explanation
Indices: 72642957--72643017 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
72642947 ATTTATGAAC
*
72642957 ATCATGTGCATATCACACAT
1 ATCATGTGCATATCATACAT
72642977 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
72642997 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
72643017 A
1 A
72643018 CCATATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72643244 original size:64 final size:66
Alignment explanation
Indices: 72643142--72643267 Score: 238
Period size: 64 Copynumber: 1.9 Consensus size: 66
72643132 TTTACCAAAA
72643142 ATTAGGGTTTCCATGTTCATTAACGATTACTAACAATCCATGGGTGCAAACAGTGA-TCTGGTAC
1 ATTAGGGTTTCCATGTTCATTAACGATTACTAACAATCCATGGGTGCAAACAGTGATTCTGGTAC
72643206 C
66 C
72643207 ATTAGGGTTTCCA-GTTCATTAACGATTACTAACAATCCATGGGTGCAAACAGTGATTCTGG
1 ATTAGGGTTTCCATGTTCATTAACGATTACTAACAATCCATGGGTGCAAACAGTGATTCTGG
72643268 CCCATTTTTA
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
64 42 0.70
65 18 0.30
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (66 bp):
ATTAGGGTTTCCATGTTCATTAACGATTACTAACAATCCATGGGTGCAAACAGTGATTCTGGTAC
C
Found at i:72646604 original size:28 final size:28
Alignment explanation
Indices: 72646535--72646635 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72646525 GACAAGATTG
* * * *
72646535 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72646565 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72646593 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72646622 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72646636 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72646629 original size:29 final size:28
Alignment explanation
Indices: 72646564--72646635 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
72646554 AAAATTGTAC
*
72646564 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
72646592 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
72646621 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72646636 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:72654449 original size:28 final size:28
Alignment explanation
Indices: 72654380--72654480 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72654370 GACAAGATTG
* * * *
72654380 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72654410 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72654438 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72654467 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72654481 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72654474 original size:29 final size:28
Alignment explanation
Indices: 72654409--72654480 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
72654399 AAAATTGTAC
*
72654409 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
72654437 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
72654466 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72654481 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:72657272 original size:20 final size:20
Alignment explanation
Indices: 72657247--72657318 Score: 144
Period size: 20 Copynumber: 3.6 Consensus size: 20
72657237 TGGGCTGAGG
72657247 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
72657267 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
72657287 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
72657307 ACACGGGCGTGT
1 ACACGGGCGTGT
72657319 GTGTGACCAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.19, C:0.38, G:0.32, T:0.11
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:72659644 original size:46 final size:46
Alignment explanation
Indices: 72659523--72659645 Score: 219
Period size: 46 Copynumber: 2.7 Consensus size: 46
72659513 TACATTTCAC
* *
72659523 GAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
72659569 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
*
72659615 GAACTCGGACTCAACTCAATGAGTTCGGATG
1 GAACTCGGACTCAACTCAACGAGTTCGGATG
72659646 ACCAAATATC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGT
Done.