Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 247 of 345
Found at i:72671250 original size:28 final size:28
Alignment explanation
Indices: 72671204--72671272 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
72671194 TTTAAAACCC
*
72671204 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72671231 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72671259 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
72671273 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:72673093 original size:19 final size:18
Alignment explanation
Indices: 72673056--72673099 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
72673046 ATACATACAG
72673056 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
72673073 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
72673092 TACTAATT
1 TAATAATT
72673100 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:72675507 original size:28 final size:28
Alignment explanation
Indices: 72675462--72675530 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
72675452 ATTTAAAACC
*
72675462 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72675489 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72675517 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
72675531 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:72677351 original size:19 final size:18
Alignment explanation
Indices: 72677314--72677357 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
72677304 ATACATACAG
72677314 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
72677331 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
72677350 TACTAATT
1 TAATAATT
72677358 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:72678109 original size:18 final size:19
Alignment explanation
Indices: 72678078--72678124 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
72678068 ATGCCAAAAT
72678078 GAAAAATGATTTTTAAGTG
1 GAAAAATGATTTTTAAGTG
72678097 GAAAAATGATTTTTAAGTG
1 GAAAAATGATTTTTAAGTG
*
72678116 AAAAAATGA
1 GAAAAATGA
72678125 ATTTGGCCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32
Consensus pattern (19 bp):
GAAAAATGATTTTTAAGTG
Found at i:72679730 original size:53 final size:53
Alignment explanation
Indices: 72679589--72679739 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
72679579 ACAAGTGTGC
* **
72679589 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
72679642 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
72679695 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
72679740 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:72687246 original size:53 final size:53
Alignment explanation
Indices: 72687105--72687255 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
72687095 ACAAGTGTGC
* **
72687105 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
72687158 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
72687211 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
72687256 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:72690553 original size:5 final size:5
Alignment explanation
Indices: 72690538--72690589 Score: 68
Period size: 5 Copynumber: 10.2 Consensus size: 5
72690528 AGTGGAAAAG
* * *
72690538 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT GGAAT
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT
72690589 T
1 T
72690590 ATGATTAATT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 40 0.91
6 4 0.09
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.37
Consensus pattern (5 bp):
TGAAT
Found at i:72691062 original size:45 final size:45
Alignment explanation
Indices: 72690998--72691237 Score: 327
Period size: 45 Copynumber: 5.3 Consensus size: 45
72690988 CTGTTAACGC
* *
72690998 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
72691043 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAGTATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
72691088 TACTGTTACCGTTATCGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
72691133 TACTGTTACCATTACTGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * * * *
72691178 TACTGTTACCGTTACCGATTCAGCATTTTGTGTGTTGAATACTAT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
72691223 TATTGTTACTGTTAC
1 TACTGTTACCGTTAC
72691238 TATTTCGGAT
Statistics
Matches: 176, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 176 1.00
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:72691438 original size:18 final size:18
Alignment explanation
Indices: 72691405--72691571 Score: 110
Period size: 18 Copynumber: 9.3 Consensus size: 18
72691395 AAAGGTATAA
* * *
72691405 AATAACTGATTATTACCG
1 AATAATTGAATATTACTG
* *
72691423 AATAATTGACTGTTACTG
1 AATAATTGAATATTACTG
*
72691441 AATAACTGAATATTACTG
1 AATAATTGAATATTACTG
72691459 AATAATTG-ATCATTACTG
1 AATAATTGAAT-ATTACTG
* * *
72691477 AATAACTGATTATCACTG
1 AATAATTGAATATTACTG
* **
72691495 AATGAA-TGACTGCTACTG
1 AAT-AATTGAATATTACTG
72691513 AATAACTT-AATAGTTACTG
1 AATAA-TTGAATA-TTACTG
*
72691532 AAT-ATCTG-ATTTTACTG
1 AATAAT-TGAATATTACTG
* *
72691549 AATAATTGACTGTTACTG
1 AATAATTGAATATTACTG
*
72691567 GATAA
1 AATAA
72691572 CCGATCAATT
Statistics
Matches: 117, Mismatches: 22, Indels: 20
0.74 0.14 0.13
Matches are distributed among these distances:
17 16 0.14
18 89 0.76
19 12 0.10
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.36
Consensus pattern (18 bp):
AATAATTGAATATTACTG
Found at i:72691455 original size:36 final size:35
Alignment explanation
Indices: 72691405--72691651 Score: 165
Period size: 36 Copynumber: 6.7 Consensus size: 35
72691395 AAAGGTATAA
* *
72691405 AATAACTGATTATTACCGAATAATTGACTGTTACTG
1 AATAACTGAATATTACTGAATAATTGA-TGTTACTG
*
72691441 AATAACTGAATATTACTGAATAATTGATCATTACTG
1 AATAACTGAATATTACTGAATAATTGAT-GTTACTG
* * *
72691477 AATAACTGATTATCACTGAATGAA-TGACTGCTACTG
1 AATAACTGAATATTACTGAAT-AATTGA-TGTTACTG
* *
72691513 AATAACTTAATAGTTACTGAAT-ATCTGATTTTACTG
1 AATAACTGAATA-TTACTGAATAAT-TGATGTTACTG
* * * * *
72691549 AATAATTGACTGTTACTGGATAACCGATCAATTAATCGATACTG
1 AATAACTGAATATTACT-G---A---AT-AATTGAT-GTTACTG
** * *
72691593 AATAACTGGTTATTATTGAATAATTGATTGTTACCG
1 AATAACTGAATATTACTGAATAATTGA-TGTTACTG
* *
72691629 AATAACTGACTGTTACTGAATAA
1 AATAACTGAATATTACTGAATAA
72691652 ATAATTATTC
Statistics
Matches: 163, Mismatches: 31, Indels: 34
0.71 0.14 0.15
Matches are distributed among these distances:
35 7 0.04
36 112 0.69
37 17 0.10
39 1 0.01
40 1 0.01
42 2 0.01
43 4 0.02
44 19 0.12
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (35 bp):
AATAACTGAATATTACTGAATAATTGATGTTACTG
Found at i:72691547 original size:72 final size:72
Alignment explanation
Indices: 72691405--72691553 Score: 205
Period size: 72 Copynumber: 2.1 Consensus size: 72
72691395 AAAGGTATAA
* *
72691405 AATAACTGATTATTACCGAATAATTGACTGTTACTGAATAACTGAATATTACTGAATAATTGATC
1 AATAACTGATTATCACCGAATAATTGACTGCTACTGAATAACTGAATATTACTGAATAATTGATC
72691470 ATTACTG
66 ATTACTG
* *
72691477 AATAACTGATTATCACTGAATGAA-TGACTGCTACTGAATAACTTAATAGTTACTGAAT-ATCTG
1 AATAACTGATTATCACCGAAT-AATTGACTGCTACTGAATAACTGAATA-TTACTGAATAAT-TG
*
72691540 AT-TTTACTG
63 ATCATTACTG
72691549 AATAA
1 AATAA
72691554 TTGACTGTTA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
72 54 0.78
73 15 0.22
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (72 bp):
AATAACTGATTATCACCGAATAATTGACTGCTACTGAATAACTGAATATTACTGAATAATTGATC
ATTACTG
Found at i:72691572 original size:54 final size:54
Alignment explanation
Indices: 72691416--72691635 Score: 160
Period size: 54 Copynumber: 3.9 Consensus size: 54
72691406 ATAACTGATT
* * * * * * *
72691416 ATTACCGAATAATTGACTGTTACTGAATAACTGAATATTACTGAATAA-TTGATC
1 ATTACTGAATAACTGATTATTACTGAATAA-TGACTGTTACTGAATAACTTAATC
* *
72691470 ATTACTGAATAACTGATTATCACTGAATGAATGACTGCTACTGAATAACTTAAT-
1 ATTACTGAATAACTGATTATTACTGAAT-AATGACTGTTACTGAATAACTTAATC
* *
72691524 AGTTACTGAATATCTGATT-TTACTGAATAATTGACTGTTACTGGATAACCGATCAATTAATC
1 A-TTACTGAATAACTGATTATTACTGAATAA-TGACTGTTACTGAAT-A---A-C--TTAATC
* * * *
72691586 GA-TACTGAATAACTGGTTATTATTGAATAATTGATTGTTACCGAATAACT
1 -ATTACTGAATAACTGATTATTACTGAATAA-TGACTGTTACTGAATAACT
72691636 GACTGTTACT
Statistics
Matches: 133, Mismatches: 19, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
53 2 0.02
54 59 0.44
55 24 0.18
57 1 0.01
58 2 0.02
59 1 0.01
61 20 0.15
62 23 0.17
63 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (54 bp):
ATTACTGAATAACTGATTATTACTGAATAATGACTGTTACTGAATAACTTAATC
Found at i:72691631 original size:18 final size:18
Alignment explanation
Indices: 72691610--72691651 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
72691600 GGTTATTATT
* *
72691610 GAATAATTGATTGTTACC
1 GAATAACTGACTGTTACC
*
72691628 GAATAACTGACTGTTACT
1 GAATAACTGACTGTTACC
72691646 GAATAA
1 GAATAA
72691652 ATAATTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (18 bp):
GAATAACTGACTGTTACC
Found at i:72693434 original size:45 final size:45
Alignment explanation
Indices: 72693368--72693457 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
72693358 TGAAATCAAG
72693368 AAAGTCTTTTTTGAGTCATTCCAGTGGCCAATGTAGCTTTTCGAT
1 AAAGTCTTTTTTGAGTCATTCCAGTGGCCAATGTAGCTTTTCGAT
* *
72693413 AAAGTCTTTTTTGAGTTATTCCAGTGGCTAATGTAGCTTTTCGAT
1 AAAGTCTTTTTTGAGTCATTCCAGTGGCCAATGTAGCTTTTCGAT
72693458 TTCAACTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (45 bp):
AAAGTCTTTTTTGAGTCATTCCAGTGGCCAATGTAGCTTTTCGAT
Found at i:72694443 original size:29 final size:30
Alignment explanation
Indices: 72694401--72694465 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
72694391 TAGTTTATAT
*
72694401 TTTTATAATTTTTAA-ATAATTAAATTAAAA
1 TTTTATAATTTTTAAGA-AATTAAAGTAAAA
*
72694431 TTTTATAA-TTTTAAGAAATTAAAGTACAA
1 TTTTATAATTTTTAAGAAATTAAAGTAAAA
72694460 TTTTAT
1 TTTTAT
72694466 TTTTATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 23 0.72
30 9 0.28
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (30 bp):
TTTTATAATTTTTAAGAAATTAAAGTAAAA
Found at i:72698851 original size:22 final size:22
Alignment explanation
Indices: 72698825--72698870 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
72698815 ATTAAATTCA
*
72698825 TATAAAGAGTTTAAGAAAAATT
1 TATAAAGAGTGTAAGAAAAATT
72698847 TATAAAGAGTGTAAGAAAAATT
1 TATAAAGAGTGTAAGAAAAATT
72698869 TA
1 TA
72698871 AAGTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.30
Consensus pattern (22 bp):
TATAAAGAGTGTAAGAAAAATT
Found at i:72700094 original size:2 final size:2
Alignment explanation
Indices: 72700087--72700119 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
72700077 GCTTGGAAGA
72700087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72700120 ATTCTTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72700510 original size:2 final size:2
Alignment explanation
Indices: 72700503--72700527 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
72700493 TATTTTCAAT
72700503 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
72700528 TTTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:72701493 original size:26 final size:27
Alignment explanation
Indices: 72701447--72701508 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
72701437 TAATAAATTT
*
72701447 TATT-TTTATTTTAAAAATATTTAAAA
1 TATTATTTATTTTAAAAATATTGAAAA
* * *
72701473 TATTATTT-TTTTAATATTATTGAACA
1 TATTATTTATTTTAAAAATATTGAAAA
72701499 TATATATTTA
1 TAT-TATTTA
72701509 ATTATTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (27 bp):
TATTATTTATTTTAAAAATATTGAAAA
Found at i:72701556 original size:22 final size:22
Alignment explanation
Indices: 72701531--72701574 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
72701521 TAGTCATATA
72701531 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * * *
72701553 ATAATTTTTTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
72701575 TATTTAATAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:72701620 original size:16 final size:16
Alignment explanation
Indices: 72701599--72701634 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
72701589 ATTTTATTTT
72701599 AATAATAAATTTAAAA
1 AATAATAAATTTAAAA
* *
72701615 AATAATAATTTTAAAT
1 AATAATAAATTTAAAA
72701631 AATA
1 AATA
72701635 TTATTGACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATAAATTTAAAA
Found at i:72701687 original size:15 final size:15
Alignment explanation
Indices: 72701667--72701723 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
72701657 ATTCAATATT
72701667 AATATTTTAATAATA
1 AATATTTTAATAATA
*
72701682 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
72701701 AATATATTAATAATA
1 AATATTTTAATAATA
*
72701716 AATGTTTT
1 AATATTTT
72701724 GTAATATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:72702898 original size:27 final size:27
Alignment explanation
Indices: 72702836--72702897 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
72702826 CTTATTAAAG
* *
72702836 TTATAAAAATATAAAAATTTAAAAGTA
1 TTATAAAAATAAAAAAATCTAAAAGTA
*
72702863 TTATAAAAATAAAAAAATCTAATA-TA
1 TTATAAAAATAAAAAAATCTAAAAGTA
72702889 TTATAAAAA
1 TTATAAAAA
72702898 AATTCTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 11 0.34
27 21 0.66
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (27 bp):
TTATAAAAATAAAAAAATCTAAAAGTA
Found at i:72705156 original size:25 final size:23
Alignment explanation
Indices: 72705104--72705158 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
72705094 TATAAATAGT
72705104 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
72705127 TATAGTGTTTGAAGTATATACT-TAA
1 AATAGTGTTAGAA--ATATACTAT-A
72705152 AATAGTG
1 AATAGTG
72705159 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 1 0.04
25 14 0.54
ACGTcount: A:0.42, C:0.04, G:0.16, T:0.38
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:72705238 original size:22 final size:22
Alignment explanation
Indices: 72705213--72705287 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
72705203 TATGAAATAG
*
72705213 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
72705235 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
72705260 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
72705282 AGATAA
1 ATATAA
72705288 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:72705257 original size:25 final size:25
Alignment explanation
Indices: 72705219--72705426 Score: 119
Period size: 25 Copynumber: 8.4 Consensus size: 25
72705209 ATAGATATAA
* *
72705219 AAAAAATATGTACATAATATAGTGT
1 AAAAAATATATACATAATATAGTAT
*
72705244 AAAAAATACATACATAATATA--AT
1 AAAAAATATATACATAATATAGTAT
* * *
72705267 -TAAAATATATACATAAGATAACATGTAG
1 AAAAAATATATACAT-A-AT-ATA-GTAT
* *
72705295 AAAAAAAATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
72705320 TAAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAGTAT
* *
72705345 AATATATATATATACATAATATAGAAT
1 AA-A-AAATATATACATAATATAGTAT
** * *
72705372 -TTAGA-ATATACCTAATATA-T-T
1 AAAAAATATATACATAATATAGTAT
*
72705393 AAAAGAATATAT--ATAATATAATAT
1 AAAA-AATATATACATAATATAGTAT
*
72705417 TAAAAATATA
1 AAAAAATATA
72705427 ATAATAACAA
Statistics
Matches: 138, Mismatches: 31, Indels: 30
0.69 0.16 0.15
Matches are distributed among these distances:
21 1 0.01
22 20 0.14
23 23 0.17
24 12 0.09
25 45 0.33
26 3 0.02
27 21 0.15
28 2 0.01
29 11 0.08
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTAT
Found at i:72705336 original size:29 final size:28
Alignment explanation
Indices: 72705232--72705363 Score: 79
Period size: 27 Copynumber: 5.0 Consensus size: 28
72705222 AAATATGTAC
* *
72705232 ATAATATAGT-GTAAAA-A-ATACATAC
1 ATAATATAGTATTAAAATATATACATAA
72705257 ATAATATA--ATTAAAATATATACATAA
1 ATAATATAGTATTAAAATATATACATAA
* * * *
72705283 GATAACAT-GTA-GAAAA-A-AAATATAA
1 -ATAATATAGTATTAAAATATATACATAA
72705308 ATAATATAGTATTAAAGATATATACATAAA
1 ATAATATAGTATTAAA-ATATATACAT-AA
* * *
72705338 ATAGTATAATA-T-ATATATATACATAA
1 ATAATATAGTATTAAAATATATACATAA
72705364 TATAGAATTT
Statistics
Matches: 82, Mismatches: 13, Indels: 23
0.69 0.11 0.19
Matches are distributed among these distances:
24 11 0.13
25 18 0.22
26 13 0.16
27 21 0.26
28 3 0.04
29 5 0.06
30 11 0.13
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (28 bp):
ATAATATAGTATTAAAATATATACATAA
Found at i:72705380 original size:27 final size:26
Alignment explanation
Indices: 72705302--72705381 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
72705292 TAGAAAAAAA
* *
72705302 ATATAAATAATATAGTA-TTAAAGAT
1 ATATACATAATATAGTATTTAAATAT
* * *
72705327 ATATACATAAAATAGTATAATATATAT
1 ATATACATAATATAGTAT-TTAAATAT
*
72705354 ATATACATAATATAGAATTTAGAATAT
1 ATATACATAATATAGTATTTA-AATAT
72705381 A
1 A
72705382 CCTAATATAT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
25 15 0.35
26 2 0.05
27 26 0.60
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (26 bp):
ATATACATAATATAGTATTTAAATAT
Found at i:72705730 original size:16 final size:16
Alignment explanation
Indices: 72705692--72705730 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
72705682 TCTCCAAAAA
*
72705692 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
72705708 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
72705724 AATAACT
1 AAAAACT
72705731 CTTCTCTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:72705926 original size:30 final size:30
Alignment explanation
Indices: 72705887--72705985 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
72705877 AGGTACAAAG
* *
72705887 TGGTAGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
72705917 AGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
72705947 TGGCGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
72705977 TGGTGGTGG
1 TGGTGGTGG
72705986 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.18, C:0.07, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:72706756 original size:88 final size:86
Alignment explanation
Indices: 72706620--72706825 Score: 205
Period size: 87 Copynumber: 2.4 Consensus size: 86
72706610 TCCTGAGCTT
* ** * * *
72706620 AACTCATTTCTCGCAATATGAACTGACTCTTTAAAACTAAACATTAAAAACATAAATTGAAAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACAAAACATT-AAAACAGAAATTGAAAATA
* *
72706685 GCTCAGCACGTGAGCCAAGGCTC
64 CCTCAGCACGTGACCCAAGGCTC
* ** **
72706708 AACTCACTTCTTGCAATATGAGTTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGAAAATAC
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAACAT-TAAAACAGAAATTGAAAATAC
* * * *
72706773 CTCGGTATGTGACCCGAGGCTC
65 CTCAGCACGTGACCCAAGGCTC
* * *
72706795 AATTCACCTCTCGTAATATGAGTTGATTTTT
1 AACTCACTTCTCGCAATATGAGTTGATTTTT
72706826 GCAAAGCATA
Statistics
Matches: 96, Mismatches: 21, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
87 73 0.76
88 23 0.24
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (86 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAACATTAAAACAGAAATTGAAAATACC
TCAGCACGTGACCCAAGGCTC
Found at i:72707012 original size:86 final size:86
Alignment explanation
Indices: 72706865--72707285 Score: 367
Period size: 86 Copynumber: 5.0 Consensus size: 86
72706855 AATAAAAATC
* *
72706865 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
72706930 TTGACAAACATAAATTGAAA-AGA
64 TTGA-AAACATAAATTGAAACAGA
* * * * *
72706953 AATTGAAAATATCTTAGCGTGTCCTGAGGCTGAACTCACCTCTCACAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
72707018 GAAAAACA-AAATTTGAAAAACAGA
66 G-AAAACATAAA-TTG--AAACAGA
* * ** * * *
72707042 ATTTGAAAATACCTCAGTGTGTGAGTCAAGGCTCAACTCACC-ATCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
72707106 TTGAAACACAGAAATTGAAGAACAGA
64 TTGAAA-ACATAAATTG-A-AACAGA
* * * * *
72707132 AATGGAAAACACCTCAGC--GTCTTGAGG-TTAACTCACCTCTCGCAATATGAGCTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
72707194 -------TGAAA--G--ACAGA
66 GAAAACAT-AAATTGAAACAGA
* * *
72707205 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCTCAATATGAGTTGA--TTTTT
1 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
72707268 GACAAACAAAAATTGAAA
66 GA-AAACATAAATTGAAA
72707286 TTACCTCGCG
Statistics
Matches: 270, Mismatches: 36, Indels: 57
0.74 0.10 0.16
Matches are distributed among these distances:
73 20 0.07
74 5 0.02
75 9 0.03
76 25 0.09
77 1 0.00
79 3 0.01
81 3 0.01
83 1 0.00
85 13 0.05
86 74 0.27
87 2 0.01
88 24 0.09
89 26 0.10
90 48 0.18
91 16 0.06
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (86 bp):
AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAAAACATAAATTGAAACAGA
Found at i:72707050 original size:13 final size:14
Alignment explanation
Indices: 72707018--72707050 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
72707008 TGATTTTTTG
72707018 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
72707032 GAAAAACAGAATTT
1 GAAAAACAAAATTT
72707046 GAAAA
1 GAAAA
72707051 TACCTCAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:72707102 original size:90 final size:90
Alignment explanation
Indices: 72706865--72707213 Score: 385
Period size: 86 Copynumber: 3.9 Consensus size: 90
72706855 AATAAAAATC
*
72706865 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGATC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
72706930 TTGACAAACATAAATTG--AAA-AGA
65 TTGAAAAACAGAAATTGAAAAACAGA
* * ** * *
72706953 AATTGAAAATATCTTAGCGTGTCCT-GAGGCTGAACTCACCTCTCACAATATGAGTTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
72707017 GGAAAAACA-AAATTTGAAAAACAGA
66 TGAAAAACAGAAA-TTGAAAAACAGA
* * * * *
72707042 ATTTGAAAATACCTCAGTGTGTGAGTCAAGGCTCAACTCACC-ATCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGA-TCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
72707106 TTGAAACACAGAAATTGAAGAACAGA
65 TTGAAAAACAGAAATTGAAAAACAGA
* * * * *
72707132 AATGGAAAACACCTCAGCGTCT--T-GAGG-TTAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
72707193 TTGAAAGACAGAAATTGAAAA
65 TTGAAAAACAGAAATTGAAAA
72707214 TACCTCAACG
Statistics
Matches: 219, Mismatches: 33, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
85 12 0.05
86 66 0.30
87 25 0.11
88 23 0.11
89 21 0.10
90 56 0.26
91 16 0.07
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.28
Consensus pattern (90 bp):
AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAACAGAAATTGAAAAACAGA
Found at i:72707167 original size:176 final size:176
Alignment explanation
Indices: 72706867--72707192 Score: 437
Period size: 176 Copynumber: 1.8 Consensus size: 176
72706857 TAAAAATCAA
* * * *
72706867 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTT
* * * * *
72706932 GACAAACATAAATTGAAAAGAAATTGAAAATATCTTAGCGTGTCCTGAGGCTGAACTCACCTCTC
66 GACAAACAGAAATTGAAAAGAAATGGAAAACACCTCAGCG-GTCCTGAGGCTGAACTCACCTCTC
*
72706997 ACAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
130 ACAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
*
72707044 TTGAAAATACCTCAGTGTGTGAGTC-AAGGCTCAACTCACC-ATCGCAATATGAGCTGATTTTTT
1 TTGAAAATACCTCAGCGTGTGA-TCTAAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTT
* *
72707107 TGA-AACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC-GTCTTGAGG-TTAACTCACC
65 TGACAA-ACAGAAATTG-A-AA-AGAAATGGAAAACACCTCAGCGGTCCTGAGGCTGAACTCACC
*
72707169 TCTCGCAATATGAGCTGATTTTTT
126 TCTCACAATATGAGCTGATTTTTT
72707193 TTGAAAGACA
Statistics
Matches: 130, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
175 2 0.02
176 64 0.49
177 43 0.33
178 4 0.03
179 17 0.13
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Consensus pattern (176 bp):
TTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTT
GACAAACAGAAATTGAAAAGAAATGGAAAACACCTCAGCGGTCCTGAGGCTGAACTCACCTCTCA
CAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
Found at i:72707458 original size:74 final size:74
Alignment explanation
Indices: 72707126--72707726 Score: 792
Period size: 73 Copynumber: 8.2 Consensus size: 74
72707116 GAAATTGAAG
* * * * *
72707126 AACAGAAATGGAAAACACCTC-A-GCGTCTTGAGG-TTAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
72707188 TTTTTTTGA-A
65 -TTTTTTGACA
*
72707198 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCTCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
72707263 -TTTTTGACA
65 TTTTTTGACA
* * * * *
72707272 AACAAAAATTGAAATTACCT---CGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
72707334 TTTTTTGAAA
65 TTTTTTGACA
* *
72707344 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
72707409 TTTTTTA-A
66 TTTTTGACA
72707417 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
72707482 -TTTTTGACA
65 TTTTTTGACA
* * * * *
72707491 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
72707556 TTTTTGAAA
66 TTTTTGACA
*
72707565 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
72707629 GTTTTGACA
66 TTTTTGACA
* * * * *
72707638 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
72707703 TTTTTTAGA
66 TTTTTGACA
* *
72707712 AACATAAATTAAAAA
1 AACAGAAATTGAAAA
72707727 ACGAAAATTG
Statistics
Matches: 467, Mismatches: 48, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
70 37 0.08
72 27 0.06
73 173 0.37
74 157 0.34
75 48 0.10
76 25 0.05
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGACA
Found at i:72707525 original size:147 final size:147
Alignment explanation
Indices: 72707126--72707792 Score: 803
Period size: 147 Copynumber: 4.5 Consensus size: 147
72707116 GAAATTGAAG
* * * * *
72707126 AACAGAAATGGAAAACACCTC-A-GCGTCTTGAGG-TTAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * *
72707188 TTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCTCA
65 --TTTTTGACAA-ACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCA
72707252 ATATGAGTTGA-TTTTTGACA
127 ATATGAGTTGATTTTTTGACA
* * * * *
72707272 AACAAAAATTGAAATTACCT---CGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * * *
72707334 TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAAT
65 -TTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
* *
72707399 ATGAGCTGATTTTTTTA-A
129 ATGAGTTGATTTTTTGACA
72707417 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
72707482 TTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATA
65 TTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
72707547 TGAGTTGATTTTTTGAAA
130 TGAGTTGATTTTTTGACA
* *
72707565 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAG
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
72707630 TTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATAT
66 TTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
72707695 GAGTTGATTTTTTTAGAAACATAAATTAA
131 GAGTTGA-TTTTTT-G--AC--------A
* * *
72707724 AAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACA-G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
72707789 ATTT
64 ATTT
72707793 GAAAAGCAGA
Statistics
Matches: 463, Mismatches: 35, Indels: 31
0.88 0.07 0.06
Matches are distributed among these distances:
145 82 0.18
146 66 0.14
147 204 0.44
148 8 0.02
149 39 0.08
151 1 0.00
159 4 0.01
160 1 0.00
161 58 0.13
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (147 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTGACA
Found at i:72707886 original size:98 final size:98
Alignment explanation
Indices: 72707717--72708080 Score: 414
Period size: 99 Copynumber: 3.8 Consensus size: 98
72707707 TTAGAAACAT
* *
72707717 AAATTAAAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTGAAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAT
** *
72707781 ATGAGTTGA-TTTGAAAAGCAGAATTTGTAAGGAA
65 ATGAGTTGATTTTGAAAAGCAGAA-TTAAAAGCAA
*
72707815 AAATTGAAAAACAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
* *
72707880 TGAGTTGATTTTTGAAAAACAGAATTAAAAGCAG
66 TGAGTTGA-TTTTGAAAAGCAGAATTAAAAGCAA
* * * * *
72707914 AAATTGAAAAACAGAAATTAAAAATACCTCGGTGTGCCCCGAGGCTCAGCTCACCTCTCGCAATA
1 AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
72707979 TGAGTTGATTTTTGAAAAGC---A-T--------
66 TGAGTTGA-TTTTGAAAAGCAGAATTAAAAGCAA
* * * *
72708001 AAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTTGCA
1 AAATTG-AAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCA
72708066 ATATGAGTTGATTTT
63 ATATGAGTTGATTTT
72708081 TTTGAAAGAT
Statistics
Matches: 236, Mismatches: 24, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
87 6 0.03
88 23 0.10
89 4 0.02
90 35 0.15
95 1 0.00
96 1 0.00
98 68 0.29
99 85 0.36
100 13 0.06
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (98 bp):
AAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTGAAAAGCAGAATTAAAAGCAA
Found at i:72707928 original size:14 final size:13
Alignment explanation
Indices: 72707894--72707937 Score: 63
Period size: 14 Copynumber: 3.4 Consensus size: 13
72707884 TTGATTTTTG
72707894 AAAAACAG-AATT
1 AAAAACAGAAATT
*
72707906 AAAAGCAGAAATT
1 AAAAACAGAAATT
72707919 GAAAAACAGAAATT
1 -AAAAACAGAAATT
72707933 AAAAA
1 AAAAA
72707938 TACCTCGGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 7 0.25
13 9 0.32
14 12 0.43
ACGTcount: A:0.68, C:0.07, G:0.11, T:0.14
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:72708067 original size:90 final size:87
Alignment explanation
Indices: 72707906--72708081 Score: 253
Period size: 90 Copynumber: 2.0 Consensus size: 87
72707896 AAACAGAATT
* * *
72707906 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGTGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGTGTGACCCGAGGCCCAACTCACCTC
72707971 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * *
72707993 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTC-G-GTGTGACCCGAGGCCCAACTCAC
*
72708058 CTCTTGCAATATGAGTTGATTTTT
63 CTCTCGCAATATGAGTTGATTTTT
72708082 TTGAAAGATA
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
87 13 0.17
88 22 0.28
89 1 0.01
90 42 0.54
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGTGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:72720166 original size:22 final size:24
Alignment explanation
Indices: 72720108--72720175 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
72720098 TAGATATAAA
* *
72720108 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
72720132 GAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
72720156 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
72720176 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:72720219 original size:25 final size:25
Alignment explanation
Indices: 72720112--72720319 Score: 98
Period size: 23 Copynumber: 8.6 Consensus size: 25
72720102 TATAAAAAAA
* * * *
72720112 ATATGTACATAATATAGTGTGAAAA
1 ATATATACATAATATAGTATTAAAG
*
72720137 ATACATACATAATATA--ATTAAA-
1 ATATATACATAATATAGTATTAAAG
* ** *
72720159 ATATATACATAAGATAACATGTAGAAAAAA
1 ATATATACAT-A-AT-ATA-GTA-TTAAAG
* *
72720189 AAATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
72720214 ATATATACATAAAATAGTA-T-AAT
1 ATATATACATAATATAGTATTAAAG
* * *
72720237 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
72720261 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
72720283 AATATATATATAATATAATATTAAA-
1 -ATATATACATAATATAGTATTAAAG
72720308 A-ATATA-ATAATA
1 ATATATACATAATA
72720320 ACAAAAAAAG
Statistics
Matches: 139, Mismatches: 30, Indels: 31
0.69 0.15 0.16
Matches are distributed among these distances:
21 1 0.01
22 17 0.12
23 42 0.30
24 19 0.14
25 36 0.26
26 7 0.05
27 2 0.01
28 3 0.02
29 4 0.03
30 8 0.06
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:72724643 original size:40 final size:40
Alignment explanation
Indices: 72724594--72724765 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
72724584 TCTTCGGAAT
* * *
72724594 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
72724633 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
72724673 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
72724713 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
72724753 TTAGCCCGGATAT
1 TTAGCCCGGATAT
72724766 CATTCAAATG
Statistics
Matches: 111, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 107 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:72730761 original size:28 final size:28
Alignment explanation
Indices: 72730696--72730794 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
72730686 CATGAGATTG
* * *
72730696 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
72730725 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
72730753 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
72730781 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72730795 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:72745260 original size:50 final size:48
Alignment explanation
Indices: 72745109--72745369 Score: 181
Period size: 46 Copynumber: 5.5 Consensus size: 48
72745099 TTTGTGTGCC
* ** * *
72745109 AGTGTAAGA-CATGTCTGGGACAT-GCATCGTCCCCGAGATGT-A-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCATGATATGTGAGAG-T
* * *
72745155 AGTGTAAGA-CATGTCTGGGACAT-ACATCGGCTACGAGATGT----GT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGATATGTGAGAGT
*
72745198 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATGAATATGTGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATG-ATATGTGAGAG-T
* * * *
72745249 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGAT-TTTGATAGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GATATGTGAGAGT
* * * *
72745297 CAATGTAAGAACATGTCTGGGACATGGCATCGACTTG--ATG-GATGAGTT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGATATGTGA-GAG-T
72745345 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
72745370 ACATTGGAAT
Statistics
Matches: 178, Mismatches: 22, Indels: 29
0.78 0.10 0.13
Matches are distributed among these distances:
44 10 0.06
45 16 0.09
46 50 0.28
47 26 0.15
48 3 0.02
49 36 0.20
50 35 0.20
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGATATGTGAGAGT
Found at i:72764017 original size:40 final size:40
Alignment explanation
Indices: 72763934--72764153 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
72763924 ACCCAAATAT
** * *
72763934 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
72763972 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
72764012 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
72764052 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * * *
72764092 CTTCGGATCTTAGTCCGAATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
72764132 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
72764154 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.11
40 123 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:72764138 original size:120 final size:118
Alignment explanation
Indices: 72763934--72764153 Score: 334
Period size: 120 Copynumber: 1.8 Consensus size: 118
72763924 ACCCAAATAT
* * * *
72763934 CTTCGGGATTTAGCCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTCA
1 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGAATATAGTCA
*
72763999 CTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
66 CTAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
* * *
72764052 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGAATATAG
1 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCAC-AAGGCCTTCGGATCTTAGCCCGAATATAG
72764116 TCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
63 TCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
72764154 CATTCGAATA
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
117 1 0.01
118 11 0.12
119 18 0.20
120 61 0.67
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (118 bp):
CTTCGGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGAATATAGTCA
CTAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
Found at i:72774246 original size:40 final size:40
Alignment explanation
Indices: 72774191--72774407 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
72774181 CGGATGATAA
* *
72774191 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
72774231 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
72774271 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
72774311 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
72774351 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
72774391 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
72774408 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 150 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:72784102 original size:47 final size:47
Alignment explanation
Indices: 72784051--72784242 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
72784041 TTAGGATTTT
72784051 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72784098 ATGTGATGAATGAGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72784145 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
72784192 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72784237 ATGTGA
1 ATGTGA
72784243 AATATATATG
Statistics
Matches: 133, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
45 25 0.19
47 108 0.81
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72784104 original size:22 final size:22
Alignment explanation
Indices: 72784076--72784151 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
72784066 ACATGCATAT
72784076 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
72784098 ATGTGATGAATGAG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
72784122 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
72784145 ATGTGAT
1 ATGTGAT
72784152 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:72784200 original size:25 final size:25
Alignment explanation
Indices: 72784125--72784200 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
72784115 ATGCATATAT
72784125 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
72784150 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
72784172 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
72784197 GTGA
1 GTGA
72784201 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:72784272 original size:48 final size:48
Alignment explanation
Indices: 72784074--72784345 Score: 235
Period size: 47 Copynumber: 5.7 Consensus size: 48
72784064 GAACATGCAT
* * *
72784074 ATATGTGATAAGGCCGAATGGCCAATGTG--AT-GA-ATGAGAGCATGC
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAGA-CATGC
* * *
72784119 ATATATGTGATAAGGCCGAATGGCCAATGTG--ATGA-ATGTGAG-CATGC
1 --ATATGTGGTAAAGCCGAATGGCCAATGTGAAAT-ATATATGAGACATGC
* *
72784166 ATATGTGTGATAAGGCCGAATGGCCAATGTG--GTGA-ATATGA-ACATGC
1 ATATGTG-G-TAAAGCCGAATGGCCAATGTGAAAT-ATATATGAGACATGC
* *
72784213 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAGACATGC
* * * *
72784261 ATATGTGGTAAAGCCAAATGGTCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCCAATGTG-AA-ATATATATGAGACATGC
* *
72784311 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATAT
72784346 GTAGGCGATG
Statistics
Matches: 199, Mismatches: 14, Indels: 23
0.84 0.06 0.10
Matches are distributed among these distances:
45 26 0.13
46 2 0.01
47 84 0.42
48 38 0.19
49 8 0.04
50 41 0.21
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAGACATGC
Found at i:72784319 original size:50 final size:50
Alignment explanation
Indices: 72784201--72784345 Score: 217
Period size: 50 Copynumber: 3.0 Consensus size: 50
72784191 AATGTGGTGA
*
72784201 ATATGA-ACATGCATATGTGGTAAAGCCGAATGGTCAATGTG-AA-ATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
*
72784248 ATATGAGATATGCATATGTGGTAAAGCCAAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
72784298 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
72784346 GTAGGCGATG
Statistics
Matches: 89, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 6 0.07
48 33 0.37
49 3 0.03
50 47 0.53
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:72784363 original size:50 final size:50
Alignment explanation
Indices: 72784213--72784369 Score: 189
Period size: 50 Copynumber: 3.2 Consensus size: 50
72784203 ATGAACATGC
72784213 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATGC--
1 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATGCGT
*
72784261 ATATGTGGTAAAGCCAAATGGTCAATGTGAAATATATATATGAGATAT--GT
1 ATATGTGGTAAAGCCGAATGGTCAATGTG-AA-ATATATATGAGATATGCGT
* * * * *
72784311 ATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATATGTAGGCGATGTGCGT
1 ATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATGAGATATGCGT
72784361 ATATTGTGG
1 ATA-TGTGG
72784370 CCGAACGACC
Statistics
Matches: 94, Mismatches: 7, Indels: 13
0.82 0.06 0.11
Matches are distributed among these distances:
48 39 0.41
49 5 0.05
50 45 0.48
51 5 0.05
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (50 bp):
ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATGCGT
Found at i:72784545 original size:37 final size:37
Alignment explanation
Indices: 72784495--72784565 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
72784485 GGAAATATAT
72784495 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
72784532 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
72784566 TCGTCTGAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72786555 original size:40 final size:40
Alignment explanation
Indices: 72786316--72786545 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
72786306 GATGATAACG
* * *
72786316 GGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
72786356 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
72786396 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
72786436 GGGCTAATTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
72786476 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
72786516 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
72786546 AGCTATATCC
Statistics
Matches: 179, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 177 0.99
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:72801438 original size:21 final size:22
Alignment explanation
Indices: 72801390--72801433 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
72801380 TTAATTTTAC
72801390 TAAAATAGTATTCGAAAAAAAT
1 TAAAATAGTATTCGAAAAAAAT
* *
72801412 TAAAATAGTTTTTGAAAAAAAT
1 TAAAATAGTATTCGAAAAAAAT
72801434 GAAATGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (22 bp):
TAAAATAGTATTCGAAAAAAAT
Found at i:72808417 original size:27 final size:28
Alignment explanation
Indices: 72808330--72808437 Score: 130
Period size: 28 Copynumber: 3.9 Consensus size: 28
72808320 GGAGGAAGCG
* * * *
72808330 TTCTAGTGGCTCTACCACAAATAGCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
72808358 TTCTGGTGCCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
72808386 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
72808413 ATCTGGTGACTCTGTCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
72808438 ATTCTAGCAG
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 31 0.44
28 40 0.56
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:72808432 original size:55 final size:55
Alignment explanation
Indices: 72808330--72808437 Score: 137
Period size: 55 Copynumber: 2.0 Consensus size: 55
72808320 GGAGGAAGCG
* *
72808330 TTCTAGTGGCTCTACCACAAATAGCTATTTCTGGTGCCTCTGCCACAAATATCTGT
1 TTCTAGTGGCTCTACCACAAATAGCTATATCTGGTGACTCTGCCAC-AATATCTGT
* * * * *
72808386 TTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCT
1 TTCTAGTGGCTCTACCACAAATAGCTATATCTGGTGACTCTGCCACAATATCT
72808438 ATTCTAGCAG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 7 0.16
55 22 0.49
56 16 0.36
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (55 bp):
TTCTAGTGGCTCTACCACAAATAGCTATATCTGGTGACTCTGCCACAATATCTGT
Found at i:72808755 original size:40 final size:40
Alignment explanation
Indices: 72808700--72808789 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
72808690 ACACTGAGTT
72808700 CCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTC
1 CCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTC
* * * * *
72808740 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTC
1 CCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTC
72808780 CCGAAGAGCA
1 CCGAAGAGCA
72808790 ATCATGCTGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTC
Found at i:72812627 original size:49 final size:49
Alignment explanation
Indices: 72812567--72812822 Score: 403
Period size: 49 Copynumber: 5.3 Consensus size: 49
72812557 GTATGAGATA
72812567 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72812616 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
72812665 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72812714 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * *
72812761 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72812808 TATAAATGTGATAAG
1 TATATATGTGATAAG
72812823 TCCCGAAGCG
Statistics
Matches: 198, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 59 0.30
49 139 0.70
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:72819722 original size:28 final size:27
Alignment explanation
Indices: 72819682--72819764 Score: 121
Period size: 27 Copynumber: 3.0 Consensus size: 27
72819672 GGAGGAAGCG
72819682 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
*
72819710 TTCTGGTGGCTCTACCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * *
72819737 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
72819764 T
1 T
72819765 CTAGTAGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
27 32 0.65
28 17 0.35
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:72821224 original size:22 final size:21
Alignment explanation
Indices: 72821177--72821230 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 21
72821167 CGGCCTCTAG
*
72821177 CACGGGTGTGTCCCAGGGTCA
1 CACGGGTGTGTCCCAGGGCCA
72821198 CACGGGTGTGTCCCTTA-GGCCA
1 CACGGGTGTGTCCC--AGGGCCA
72821220 CACGGGTGTGT
1 CACGGGTGTGT
72821231 GAGCCATACA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 14 0.47
22 15 0.50
23 1 0.03
ACGTcount: A:0.13, C:0.28, G:0.37, T:0.22
Consensus pattern (21 bp):
CACGGGTGTGTCCCAGGGCCA
Found at i:72830463 original size:38 final size:38
Alignment explanation
Indices: 72830421--72830548 Score: 175
Period size: 38 Copynumber: 3.3 Consensus size: 38
72830411 GTAAGCTTTA
* *
72830421 TGCTGGAATTATATCTGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCTGGTTTAAATCCCGCAGGCTTCG
* * *
72830459 TGCTGGTATTATATCCGGTTTAAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCTGGTTTAAATCCCGCAGGCTTCG
*
72830497 TGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGCTTCG
1 TGCTGGTATTATATCTG-GTTTAAA-TCCCGCAGGCTTCG
*
72830537 TGCTGGTGTTAT
1 TGCTGGTATTAT
72830549 GTTCGAGTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 49 0.63
39 7 0.09
40 22 0.28
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.35
Consensus pattern (38 bp):
TGCTGGTATTATATCTGGTTTAAATCCCGCAGGCTTCG
Found at i:72832485 original size:26 final size:26
Alignment explanation
Indices: 72832456--72832615 Score: 266
Period size: 26 Copynumber: 6.2 Consensus size: 26
72832446 TGGTACAAAT
72832456 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
72832482 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72832508 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
72832534 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
72832560 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
72832586 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72832612 TGAT
1 TGAT
72832616 GGGAATTTCA
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 123 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:72832518 original size:52 final size:52
Alignment explanation
Indices: 72832456--72832615 Score: 293
Period size: 52 Copynumber: 3.1 Consensus size: 52
72832446 TGGTACAAAT
72832456 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
72832508 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
72832560 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
72832612 TGAT
1 TGAT
72832616 GGGAATTTCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:72834130 original size:26 final size:26
Alignment explanation
Indices: 72834101--72834153 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
72834091 TTTACAGTTT
72834101 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
72834127 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
72834153 T
1 T
72834154 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:72839610 original size:26 final size:26
Alignment explanation
Indices: 72839581--72839688 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
72839571 TGGTACAAAT
72839581 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
72839607 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
72839633 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
72839659 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72839685 TGAT
1 TGAT
72839689 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:72845443 original size:30 final size:30
Alignment explanation
Indices: 72845409--72845469 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
72845399 TTCCCGAGCC
72845409 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
72845439 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
72845469 T
1 T
72845470 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:72849954 original size:30 final size:30
Alignment explanation
Indices: 72849920--72849980 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
72849910 TTCCCGAGCC
72849920 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
72849950 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
72849980 T
1 T
72849981 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:72854477 original size:30 final size:30
Alignment explanation
Indices: 72854419--72854479 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72854409 TTCCCGAGCC
*
72854419 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
* * * *
72854449 TAGGGGCAAAATTGTAATTTTACCAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
72854479 T
1 T
72854480 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATACAAAAGTT
Found at i:72862647 original size:13 final size:13
Alignment explanation
Indices: 72862627--72862661 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
72862617 GGCTGAACCT
72862627 AAATAATTAAATA
1 AAATAATTAAATA
*
72862640 ACATAATTAAATA
1 AAATAATTAAATA
72862653 AAATAATTA
1 AAATAATTA
72862662 TTCATATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATAATTAAATA
Found at i:72864926 original size:80 final size:80
Alignment explanation
Indices: 72864789--72864995 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
72864779 AATTGAATGA
* * ** * * * *
72864789 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGAGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
72864854 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
72864867 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
72864932 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
72864949 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72864996 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:72864980 original size:40 final size:39
Alignment explanation
Indices: 72864788--72864995 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
72864778 CAATTGAATG
* * ** * *
72864788 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * *
72864828 ATATCCGAGTTAAGACCCGAAGGCAATT-GTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
72864868 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
72864908 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
72864948 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
72864988 ATATCCGG
1 ATATCCGG
72864996 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 22, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
39 4 0.03
40 132 0.94
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:72867839 original size:18 final size:18
Alignment explanation
Indices: 72867801--72867839 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
72867791 TCACTCTCGA
***
72867801 TCTCTTTTTCTTTTTCCT
1 TCTCTTTTTCTTTTAAAT
72867819 TCTCTTTTTCTTTTAAAT
1 TCTCTTTTTCTTTTAAAT
72867837 TCT
1 TCT
72867840 TTCTCACTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (18 bp):
TCTCTTTTTCTTTTAAAT
Found at i:72869974 original size:13 final size:13
Alignment explanation
Indices: 72869956--72869990 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
72869946 GGCTGAACCT
72869956 ACATAATTAAATA
1 ACATAATTAAATA
72869969 ACATAATTAAATA
1 ACATAATTAAATA
*
72869982 AAATAATTA
1 ACATAATTA
72869991 TTCATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:72870255 original size:20 final size:21
Alignment explanation
Indices: 72870220--72870258 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
72870210 AGCTGAAACA
*
72870220 AGCTAAATTTGAGCTCAAGTG
1 AGCTAAATTCGAGCTCAAGTG
72870241 AGCTAAA-TCGAGCTCAAG
1 AGCTAAATTCGAGCTCAAG
72870259 CAAGCTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (21 bp):
AGCTAAATTCGAGCTCAAGTG
Found at i:72870264 original size:20 final size:19
Alignment explanation
Indices: 72870205--72870264 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 19
72870195 AATGTAAAAG
* *
72870205 AAATGAGCTGAAACAAGCT
1 AAATGAGCTCAAGCAAGCT
**
72870224 AAATTTGAGCTCAAGTGAGCT
1 AAA--TGAGCTCAAGCAAGCT
72870245 AAATCGAGCTCAAGCAAGCT
1 AAAT-GAGCTCAAGCAAGCT
72870265 GATTGGAGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
19 4 0.12
20 13 0.41
21 15 0.47
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (19 bp):
AAATGAGCTCAAGCAAGCT
Found at i:72873435 original size:31 final size:31
Alignment explanation
Indices: 72873397--72873459 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
72873387 TTTGCCAAAG
72873397 TATAAATTATGAAATCTATTGGTTAATATGA
1 TATAAATTATGAAATCTATTGGTTAATATGA
72873428 TATAAATTATGAAATCTATTGGTTAATATGA
1 TATAAATTATGAAATCTATTGGTTAATATGA
72873459 T
1 T
72873460 GATTAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.43
Consensus pattern (31 bp):
TATAAATTATGAAATCTATTGGTTAATATGA
Found at i:72876030 original size:87 final size:87
Alignment explanation
Indices: 72875884--72876064 Score: 256
Period size: 87 Copynumber: 2.1 Consensus size: 87
72875874 CAGTTGTGTG
* *
72875884 GAGGACACGACCTAGCACACGGGTGTGTGGCCAGGCTGTGTGGTTCAAATTACTTGCTGACGTCA
1 GAGGACACGACCTAGCACACGGGCGTGTGGCCAGGCCGTGTGGTTCAAATTACTTGCTGACGTCA
*
72875949 CAAACAAAGAGTTATACGAGCT
66 CAAACAAAGAGTTACACGAGCT
* * **
72875971 GAGGACAC-AGCCTAGCACACGGGCGTGTGGCCTGGCCGTGTGGTTTAAATTACTTGCTGATTTC
1 GAGGACACGA-CCTAGCACACGGGCGTGTGGCCAGGCCGTGTGGTTCAAATTACTTGCTGACGTC
* * *
72876035 ACAAATAGAGAGTTACACGGGCT
65 ACAAACAAAGAGTTACACGAGCT
72876058 GAGGACA
1 GAGGACA
72876065 TGAGCGTGTC
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 1 0.01
87 82 0.99
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (87 bp):
GAGGACACGACCTAGCACACGGGCGTGTGGCCAGGCCGTGTGGTTCAAATTACTTGCTGACGTCA
CAAACAAAGAGTTACACGAGCT
Found at i:72886524 original size:45 final size:44
Alignment explanation
Indices: 72886422--72886557 Score: 152
Period size: 45 Copynumber: 3.1 Consensus size: 44
72886412 ATATAATCAC
* * * * *
72886422 ATATCGATGTCACTGTCCCAGATAGGGTCTTACACGAATCA-A-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAACACAT
* *
72886464 ATA-CGATGCCGATGTCCTAGACATGGTCTTACACGTAAACACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AAACACAT
* *
72886508 ATATCGATGCCAATGTCCCAGACGTGGTCTTACATGAGAACACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGA-AACACAT
72886553 ATATC
1 ATATC
72886558 AGAAATCTTA
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
41 26 0.33
42 7 0.09
43 1 0.01
44 4 0.05
45 40 0.51
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:72899566 original size:22 final size:22
Alignment explanation
Indices: 72899520--72899566 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
72899510 AAAAAATTAT
* *
72899520 TAAATATTAAAATAATATAATA
1 TAAATATTAAAATAATAAAAAA
72899542 TAAATATTTAAAA-AATAAAAAA
1 TAAATA-TTAAAATAATAAAAAA
72899564 TAA
1 TAA
72899567 TATGAGTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAATATTAAAATAATAAAAAA
Found at i:72900385 original size:14 final size:13
Alignment explanation
Indices: 72900366--72900401 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
72900356 AAATAAACTC
72900366 AAAAAGTAAAAAAA
1 AAAAAG-AAAAAAA
72900380 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
*
72900393 GAAAAGAAA
1 AAAAAGAAA
72900402 TTAGACTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:72903554 original size:57 final size:59
Alignment explanation
Indices: 72903419--72903556 Score: 146
Period size: 57 Copynumber: 2.4 Consensus size: 59
72903409 AATAATAGTA
72903419 CATATGCTACAAATAGAATTTAGCCCAGACGAGTAATTCTAATGTAAGCCCTCTTGAGT
1 CATATGCTACAAATAGAATTTAGCCCAGACGAGTAATTCTAATGTAAGCCCTCTTGAGT
* * * * *
72903478 --TAGGTTACAAATTA-TATTTAGCCCAGACGGGTAATTC-ATAT-TAAG--CTCTTTAGAT
1 CATATGCTACAAA-TAGAATTTAGCCCAGACGAGTAATTCTA-ATGTAAGCCCTCTTGAG-T
*
72903533 CATATACTACAAATAGAATTTAGC
1 CATATGCTACAAATAGAATTTAGC
72903557 TTGGACTGGT
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
54 7 0.11
55 1 0.02
56 7 0.11
57 47 0.73
58 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (59 bp):
CATATGCTACAAATAGAATTTAGCCCAGACGAGTAATTCTAATGTAAGCCCTCTTGAGT
Found at i:72904953 original size:19 final size:19
Alignment explanation
Indices: 72904929--72904968 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
72904919 CTTTTTTGAA
72904929 TTCATTCAACATTTCCAAG
1 TTCATTCAACATTTCCAAG
*
72904948 TTCATTCAACATTTCTAAG
1 TTCATTCAACATTTCCAAG
72904967 TT
1 TT
72904969 TGACGCAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (19 bp):
TTCATTCAACATTTCCAAG
Found at i:72906178 original size:23 final size:23
Alignment explanation
Indices: 72906152--72906195 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
72906142 GAGAATGAAT
*
72906152 AAAAGAAAAGGAAAAAGGAAAAA
1 AAAAGAAAAGAAAAAAGGAAAAA
*
72906175 AAAAGAAAAGAAAAAATGAAA
1 AAAAGAAAAGAAAAAAGGAAA
72906196 TAGAAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (23 bp):
AAAAGAAAAGAAAAAAGGAAAAA
Found at i:72906926 original size:36 final size:36
Alignment explanation
Indices: 72906886--72906994 Score: 209
Period size: 36 Copynumber: 3.0 Consensus size: 36
72906876 GTTAATTAAA
72906886 CTCAATTTATAATATTATTAAAATAAAAAATTATTT
1 CTCAATTTATAATATTATTAAAATAAAAAATTATTT
72906922 CTCAATTTATAATATTATTAAAATAAAAAATTATTT
1 CTCAATTTATAATATTATTAAAATAAAAAATTATTT
72906958 CTCAATTTATAATATTATTAAAATAAAAAAATTATTT
1 CTCAATTTATAATATTATTAAAAT-AAAAAATTATTT
72906995 TTCTTTTAAG
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
36 60 0.83
37 12 0.17
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (36 bp):
CTCAATTTATAATATTATTAAAATAAAAAATTATTT
Found at i:72906940 original size:20 final size:20
Alignment explanation
Indices: 72906915--72906976 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
72906905 AAAATAAAAA
72906915 ATTATTTCTCAATTTATAAT
1 ATTATTTCTCAATTTATAAT
** * *
72906935 ATTA--T-T-AAAATAAAAA
1 ATTATTTCTCAATTTATAAT
72906951 ATTATTTCTCAATTTATAAT
1 ATTATTTCTCAATTTATAAT
72906971 ATTATT
1 ATTATT
72906977 AAAATAAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 8
0.65 0.17 0.17
Matches are distributed among these distances:
16 10 0.33
17 1 0.03
18 2 0.07
19 1 0.03
20 16 0.53
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTATTTCTCAATTTATAAT
Found at i:72913138 original size:8 final size:8
Alignment explanation
Indices: 72913125--72913163 Score: 51
Period size: 9 Copynumber: 4.6 Consensus size: 8
72913115 TACTTTTGCA
72913125 TAAATTTT
1 TAAATTTT
72913133 TAAATTTT
1 TAAATTTT
72913141 TAAATTTTT
1 TAAA-TTTT
*
72913150 TTAATATTT
1 TAAAT-TTT
72913159 TAAAT
1 TAAAT
72913164 CAATTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 13 0.48
9 14 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TAAATTTT
Found at i:72913150 original size:18 final size:18
Alignment explanation
Indices: 72913125--72913163 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
72913115 TACTTTTGCA
*
72913125 TAAA-TTTTTAAAT-TTT
1 TAAATTTTTTTAATATTT
72913141 TAAATTTTTTTAATATTT
1 TAAATTTTTTTAATATTT
72913159 TAAAT
1 TAAAT
72913164 CAATTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 8 0.40
18 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TAAATTTTTTTAATATTT
Found at i:72913189 original size:21 final size:20
Alignment explanation
Indices: 72913127--72913172 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 20
72913117 CTTTTGCATA
72913127 AATTTTTAA-ATTTTTAAAT-
1 AATTTTTAATA-TTTTAAATC
*
72913146 -TTTTTTAATATTTTAAATC
1 AATTTTTAATATTTTAAATC
72913165 AATTTTTA
1 AATTTTTA
72913173 TCATTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
18 15 0.68
19 1 0.05
20 6 0.27
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
AATTTTTAATATTTTAAATC
Found at i:72913650 original size:7 final size:8
Alignment explanation
Indices: 72913631--72913693 Score: 53
Period size: 8 Copynumber: 8.0 Consensus size: 8
72913621 TGTTGAAACT
72913631 TTTTTATA
1 TTTTTATA
72913639 TTTTTATA
1 TTTTTATA
72913647 TTTTTGA-A
1 TTTTT-ATA
*
72913655 TTTTTAAAA
1 TTTTT-ATA
72913664 TTATTT-TA
1 TT-TTTATA
*
72913672 ATTTTA-A
1 TTTTTATA
72913679 TTTTT-TA
1 TTTTTATA
72913686 TTTTTATA
1 TTTTTATA
72913694 GAGATTTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
7 14 0.31
8 24 0.53
9 4 0.09
10 3 0.07
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.70
Consensus pattern (8 bp):
TTTTTATA
Found at i:72918919 original size:38 final size:38
Alignment explanation
Indices: 72918868--72918944 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
72918858 CTATGAGGAC
72918868 TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
1 TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
72918906 TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
1 TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
72918944 T
1 T
72918945 AAGCATGTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (38 bp):
TTAGTATATGATGATATTATGAAAGATATGTATTTGGA
Found at i:72928687 original size:46 final size:46
Alignment explanation
Indices: 72928533--72928700 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
72928523 ATTGTATGCT
*
72928533 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAATATGAGAGCC
* * * ** * * *
72928579 AATGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAATATGAGAGCC
*
72928627 AGTGTAAGACATGTCTGGGACATGCATGGGCCTCAATATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATATG-AGAGCC
*
72928673 AGTGTAAGATATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
72928701 AGCTACAAGA
Statistics
Matches: 98, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 48 0.49
47 27 0.28
48 22 0.22
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGAGCC
Found at i:72936321 original size:40 final size:40
Alignment explanation
Indices: 72936236--72936386 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
72936226 AATTGAATGA
* * *
72936236 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
72936276 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
72936317 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
72936356 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
72936387 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:72936400 original size:40 final size:40
Alignment explanation
Indices: 72936273--72936402 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
72936263 ATGCTGGAAA
* * * *
72936273 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
72936313 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
72936353 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
72936393 TTATATCCGG
1 TTATATCCGG
72936403 TTTATTCCGA
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:72944347 original size:40 final size:40
Alignment explanation
Indices: 72944262--72944412 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
72944252 AATTGAATGA
* * *
72944262 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
72944302 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
72944343 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
72944382 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
72944413 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:72944426 original size:40 final size:40
Alignment explanation
Indices: 72944299--72944428 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
72944289 ATGCTGGAAA
* * * *
72944299 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
72944339 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
72944379 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
72944419 TTATATCCGG
1 TTATATCCGG
72944429 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:72947698 original size:37 final size:37
Alignment explanation
Indices: 72947656--72947729 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
72947646 TAAGCCAGTG
72947656 TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
1 TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
72947693 TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
1 TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
72947730 GTTAGTGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (37 bp):
TAAGACATGTCTGGGACATGCATCGACTACAAGATGT
Found at i:72960634 original size:40 final size:40
Alignment explanation
Indices: 72960579--72960781 Score: 241
Period size: 40 Copynumber: 5.1 Consensus size: 40
72960569 CGGATGATAA
* * * *
72960579 CCGGGCTAAGTCCCGAAGGAATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
72960619 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72960659 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72960699 CCGGGCTAAGTCCCAAAGGTATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72960739 CCGGCCTAAGTCCCAAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
72960778 CCGG
1 CCGG
72960782 TTAAATCCCA
Statistics
Matches: 145, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
38 2 0.01
39 18 0.12
40 125 0.86
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72973334 original size:45 final size:45
Alignment explanation
Indices: 72973278--72973365 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
72973268 TTATGTGATT
* * * *
72973278 TGAACTTATTGAGTTGTGGTCTAAGTTCATGATATATGTGGCATC
1 TGAACTCATTGAGTTATGGTATAAGTTCATGATATATATGGCATC
* *
72973323 TGAACTCATTGAGTTATGGTATGAGTTCATGATGTATATGGCA
1 TGAACTCATTGAGTTATGGTATAAGTTCATGATATATATGGCA
72973366 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.26, C:0.10, G:0.25, T:0.39
Consensus pattern (45 bp):
TGAACTCATTGAGTTATGGTATAAGTTCATGATATATATGGCATC
Found at i:72975076 original size:45 final size:44
Alignment explanation
Indices: 72974992--72975076 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
72974982 ATGTAATCTG
* *
72974992 AACTCATTGAGTTGTGTCTGAGTTCATTATATATGTGACATCCA
1 AACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCCA
* * *
72975036 AACTCCTTGAGTTGTGGTCTGAGTTCGTGATATGTATGACA
1 AACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGACA
72975077 CATGTTTTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 14 0.40
45 21 0.60
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCCA
Found at i:72993620 original size:26 final size:26
Alignment explanation
Indices: 72993583--72993665 Score: 130
Period size: 26 Copynumber: 3.2 Consensus size: 26
72993573 TAACTTATTC
*
72993583 CCACGGCCAATAGACACGCCCGTGTG
1 CCACGGCTAATAGACACGCCCGTGTG
72993609 CCACGGCTAATAGACACGCCCGTGTG
1 CCACGGCTAATAGACACGCCCGTGTG
** *
72993635 CCACAACTAATAGACACGCCCGTATG
1 CCACGGCTAATAGACACGCCCGTGTG
72993661 CCACG
1 CCACG
72993666 ACCGTGTGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.37, G:0.23, T:0.13
Consensus pattern (26 bp):
CCACGGCTAATAGACACGCCCGTGTG
Found at i:72997077 original size:28 final size:28
Alignment explanation
Indices: 72997045--72997113 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
72997035 GCAATAAGCC
* *
72997045 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
72997073 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72997101 TGCACACTTAGTG
1 CGCACACTTAGTG
72997114 TAACACCCCG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72998571 original size:40 final size:40
Alignment explanation
Indices: 72998463--72998712 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
72998453 CGGGATTTAA
* * * * *
72998463 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72998503 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72998543 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72998583 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72998623 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72998663 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72998703 CCGGATATAT
1 CCGGATATAT
72998713 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:73006435 original size:40 final size:40
Alignment explanation
Indices: 73006323--73006571 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
73006313 CGGGATTTAA
* * * * *
73006323 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
73006363 CCGGAT-TGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73006402 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73006442 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73006482 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73006522 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73006562 CCGGATATAT
1 CCGGATATAT
73006572 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 31 0.16
40 162 0.84
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:73015819 original size:28 final size:28
Alignment explanation
Indices: 73015787--73015885 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
73015777 GCAATAAGCC
*
73015787 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
73015815 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
73015843 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
73015872 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73015886 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:73018218 original size:28 final size:28
Alignment explanation
Indices: 73018178--73018235 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
73018168 GGAAGTTTCA
73018178 CTTCTCTCCCTATCTTATGATTATAAAT
1 CTTCTCTCCCTATCTTATGATTATAAAT
73018206 CTTCTCTCCCTATCTTATGATTATAAAT
1 CTTCTCTCCCTATCTTATGATTATAAAT
73018234 CT
1 CT
73018236 ATCTTTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.24, C:0.26, G:0.03, T:0.47
Consensus pattern (28 bp):
CTTCTCTCCCTATCTTATGATTATAAAT
Found at i:73027933 original size:48 final size:48
Alignment explanation
Indices: 73027861--73028143 Score: 210
Period size: 48 Copynumber: 5.9 Consensus size: 48
73027851 GTAAATTGCT
* * * * * * *
73027861 GATGTCATGTCTAAGACATTGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTCTCAGACATGGTCTTACACTGGCACACATATCAAGGCC
* * ****
73027909 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAAGGTGGCC
1 GATGCCATGTCTCAGACATGGTCTTACACTGGCACACATATCAAGGCC
* * * * * **
73027957 GTTGCTATATCTCAGACATGATCTTACACTAGCACACATATCAACACC
1 GATGCCATGTCTCAGACATGGTCTTACACTGGCACACATATCAAGGCC
* * * * * * * *
73028005 GATGTCATGTCCCAGACATGGCCTTATACTAGCAAACATATCAATGTC
1 GATGCCATGTCTCAGACATGGTCTTACACTGGCACACATATCAAGGCC
* * * * * **
73028053 GATGCCATGTCCCAAACATGGTCCTACACTGGCTCTCATAAT-TTGGCC
1 GATGCCATGTCTCAGACATGGTCTTACACTGGCACACAT-ATCAAGGCC
*
73028101 GATACCATGTC-CTAGACATGGTCTTACACTGGCACACATATCA
1 GATGCCATGTCTC-AGACATGGTCTTACACTGGCACACATATCA
73028144 CCCAATTGTC
Statistics
Matches: 179, Mismatches: 53, Indels: 6
0.75 0.22 0.03
Matches are distributed among these distances:
47 3 0.02
48 174 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCTCAGACATGGTCTTACACTGGCACACATATCAAGGCC
Found at i:73030389 original size:21 final size:21
Alignment explanation
Indices: 73030365--73030434 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
73030355 TGATTTGAAC
73030365 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
**
73030386 TCATAAT-A-TATGTGGCATCTGAAC
1 TCAT--TGAGT-TGTGG--TCTGAGT
*
73030410 TCATTGAGTTATGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
73030431 TCAT
1 TCAT
73030435 AATGTATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 14
0.66 0.09 0.25
Matches are distributed among these distances:
21 14 0.38
22 7 0.19
23 6 0.16
24 10 0.27
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:73042138 original size:898 final size:898
Alignment explanation
Indices: 73040395--73042186 Score: 3404
Period size: 898 Copynumber: 2.0 Consensus size: 898
73040385 AATTTAAGAA
73040395 AAGGACAAAATTGTAAAGCTAAATTGTTAGGGTTGTACATTAGGGACCAAATTGGATAAAATGAA
1 AAGGACAAAATTGTAAAGCTAAATTGTTAGGGTTGTACATTAGGGACCAAATTGGATAAAATGAA
*
73040460 AAAATGTTATGAAATTTCAACAGGAATAGAAATTATAAGGTCCCTAATGAGTTATGATAAAATCG
66 AAAATGTTATGAAATTTCAACAGAAATAGAAATTATAAGGTCCCTAATGAGTTATGATAAAATCG
*
73040525 AGTTTTAATTCGAAGCCCAAAATTAAAAGTTATACTTGTCTTTATTTAGGGACTAAATTGAATAA
131 AGTTTTAATTCGAAGCCCAAAATTAAAAGTTATACTTGTCTCTATTTAGGGACTAAATTGAATAA
73040590 TTTGAAAATTATGTGTAAATTGATATTTGGTTATGAATTGGCTGGAATTTGGTAATGTGTTATGT
196 TTTGAAAATTATGTGTAAATTGATATTTGGTTATGAATTGGCTGGAATTTGGTAATGTGTTATGT
*
73040655 TTTGCGACTACTCGTGGCTAACATCGACATGAAACCTTCAAGGGGAAAGGAAAAGTAAGAGTTGT
261 TTTGCGACTACTCGTGGCTAACATCGACATGAAACCTTCAAGAGGAAAGGAAAAGTAAGAGTTGT
*
73040720 CGACAAGTGATGCGAGACCATGATTTATACATTTACGATTTGGGGTCATGTTGATTGCATTTTTA
326 CGACAAGTGACGCGAGACCATGATTTATACATTTACGATTTGGGGTCATGTTGATTGCATTTTTA
73040785 TGTTAACTGCATTTAGAAATATCAAGGGGAGTGCCTATTAATAATATAAGCTATTGAATTGAGCT
391 TGTTAACTGCATTTAGAAATATCAAGGGGAGTGCCTATTAATAATATAAGCTATTGAATTGAGCT
73040850 TGATTGTGAATTGCCAAAATAGAGGACTAAAATGAATAAAATGTAAAATAGCATGAAATATTTGA
456 TGATTGTGAATTGCCAAAATAGAGGACTAAAATGAATAAAATGTAAAATAGCATGAAATATTTGA
73040915 AATATTCATGTTTTATGAGATTGGGTGGAAATGTGTTGAATTACAAGAAGTATATGTGATATGTT
521 AATATTCATGTTTTATGAGATTGGGTGGAAATGTGTTGAATTACAAGAAGTATATGTGATATGTT
73040980 AATAGATTGGATTGTGATAATGTATATGCTTGATAAATTGTAATTGTATTAAATTGTAAATGATG
586 AATAGATTGGATTGTGATAATGTATATGCTTGATAAATTGTAATTGTATTAAATTGTAAATGATG
73041045 TTGAATATTGGAACCCTATTAGCTATTCGGGTTGTTTCGAATATAGTTAACATGTCATAGGATTA
651 TTGAATATTGGAACCCTATTAGCTATTCGGGTTGTTTCGAATATAGTTAACATGTCATAGGATTA
*
73041110 GTTTGTGTATGAGATTATGCACTAATGTGTCAGTCTAATAGCTCGGTTTAGACCCTAGTCAGAAT
716 GTTTGTGTATGAGATTATGCACTAATGTGCCAGTCTAATAGCTCGGTTTAGACCCTAGTCAGAAT
73041175 AGTGGTTTTGAGACCACAAACCTGAGTCAAAAAATATTTTAATATTATTTTCTGTGCTAATTATA
781 AGTGGTTTTGAGACCACAAACCTGAGTCAAAAAATATTTTAATATTATTTTCTGTGCTAATTATA
*
73041240 TGTGAATTGATATATGTGAAAATTCCGTATGAAAATTTTACCATTTGTGAGAC
846 TGTGAATTGATATATATGAAAATTCCGTATGAAAATTTTACCATTTGTGAGAC
*
73041293 AAGGACAAAATTGTAAAGCTAAATTGTTAGGTTTGTACATTAGGGACCAAATTGGATAAAATGAA
1 AAGGACAAAATTGTAAAGCTAAATTGTTAGGGTTGTACATTAGGGACCAAATTGGATAAAATGAA
73041358 AAAATGTTATGAAATTTCAACAGAAATAGAAATTATAAGGTCCCTAATGAGTTATGATAAAATCG
66 AAAATGTTATGAAATTTCAACAGAAATAGAAATTATAAGGTCCCTAATGAGTTATGATAAAATCG
73041423 AGTTTTAATTCGAAGCCCAAAATTAAAAGTTATACTTGTCTCTATTTAGGGACTAAATTGAATAA
131 AGTTTTAATTCGAAGCCCAAAATTAAAAGTTATACTTGTCTCTATTTAGGGACTAAATTGAATAA
73041488 TTTGAAAATTATGTGTAAATTGATATTTGGTTATGAATTGGCTGGAATTTGGTAATGTGTTATGT
196 TTTGAAAATTATGTGTAAATTGATATTTGGTTATGAATTGGCTGGAATTTGGTAATGTGTTATGT
* *
73041553 TTTGTGACTACTCGTGGCTAACATTGACATGAAACCTTCAAGAGGAAAGGAAAAGTAAGAGTTGT
261 TTTGCGACTACTCGTGGCTAACATCGACATGAAACCTTCAAGAGGAAAGGAAAAGTAAGAGTTGT
*
73041618 CGACAAGTGACGTGAGACCATGATTTATACATTTACGATTTGGGGTCATGTTGATTGCATTTTTA
326 CGACAAGTGACGCGAGACCATGATTTATACATTTACGATTTGGGGTCATGTTGATTGCATTTTTA
* * *
73041683 TGTTAACTGCATTTAGAAATGTCAAGGTGAGTGCCTATTAATAATATGAGCTATTGAATTGAGCT
391 TGTTAACTGCATTTAGAAATATCAAGGGGAGTGCCTATTAATAATATAAGCTATTGAATTGAGCT
73041748 TGATTGTGAATTGCCAAAATAGAGGACTAAAATGAATAAAATGTAAAATAGCATGAAATATTTGA
456 TGATTGTGAATTGCCAAAATAGAGGACTAAAATGAATAAAATGTAAAATAGCATGAAATATTTGA
*
73041813 AATATTCATGTTTTATGAGATTGGGTGGAAATGTGTTGAATTACATGAAGTATATGTGATATGTT
521 AATATTCATGTTTTATGAGATTGGGTGGAAATGTGTTGAATTACAAGAAGTATATGTGATATGTT
73041878 AATAGATTGGATTGTGATAATGTATATGCTTGATAAATTGTAATTGTATTAAATTGTAAATGATG
586 AATAGATTGGATTGTGATAATGTATATGCTTGATAAATTGTAATTGTATTAAATTGTAAATGATG
*
73041943 TTGAATATTGGAACCCTATTAGCTATTCGGGTTGTTTCGAATATAGTTAGCATGTCATAGGATTA
651 TTGAATATTGGAACCCTATTAGCTATTCGGGTTGTTTCGAATATAGTTAACATGTCATAGGATTA
*
73042008 GTTTGTGTATGAGATTATGCACTAATGTGCCAGTCTAATAGCTCGGTTTAGACCCTAGTCGGAAT
716 GTTTGTGTATGAGATTATGCACTAATGTGCCAGTCTAATAGCTCGGTTTAGACCCTAGTCAGAAT
* * *
73042073 AGTGGTTTTGAGACCACGAACCTGAGTCAAAAAATATTTTAATATTATTTTTTGTGCTGATTATA
781 AGTGGTTTTGAGACCACAAACCTGAGTCAAAAAATATTTTAATATTATTTTCTGTGCTAATTATA
*
73042138 TGTGAATTGATATCTATGAAAATTCCGTATGAAAATTTTACCATTTGTG
846 TGTGAATTGATATATATGAAAATTCCGTATGAAAATTTTACCATTTGTG
73042187 TGTTTAATTT
Statistics
Matches: 874, Mismatches: 20, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
898 874 1.00
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (898 bp):
AAGGACAAAATTGTAAAGCTAAATTGTTAGGGTTGTACATTAGGGACCAAATTGGATAAAATGAA
AAAATGTTATGAAATTTCAACAGAAATAGAAATTATAAGGTCCCTAATGAGTTATGATAAAATCG
AGTTTTAATTCGAAGCCCAAAATTAAAAGTTATACTTGTCTCTATTTAGGGACTAAATTGAATAA
TTTGAAAATTATGTGTAAATTGATATTTGGTTATGAATTGGCTGGAATTTGGTAATGTGTTATGT
TTTGCGACTACTCGTGGCTAACATCGACATGAAACCTTCAAGAGGAAAGGAAAAGTAAGAGTTGT
CGACAAGTGACGCGAGACCATGATTTATACATTTACGATTTGGGGTCATGTTGATTGCATTTTTA
TGTTAACTGCATTTAGAAATATCAAGGGGAGTGCCTATTAATAATATAAGCTATTGAATTGAGCT
TGATTGTGAATTGCCAAAATAGAGGACTAAAATGAATAAAATGTAAAATAGCATGAAATATTTGA
AATATTCATGTTTTATGAGATTGGGTGGAAATGTGTTGAATTACAAGAAGTATATGTGATATGTT
AATAGATTGGATTGTGATAATGTATATGCTTGATAAATTGTAATTGTATTAAATTGTAAATGATG
TTGAATATTGGAACCCTATTAGCTATTCGGGTTGTTTCGAATATAGTTAACATGTCATAGGATTA
GTTTGTGTATGAGATTATGCACTAATGTGCCAGTCTAATAGCTCGGTTTAGACCCTAGTCAGAAT
AGTGGTTTTGAGACCACAAACCTGAGTCAAAAAATATTTTAATATTATTTTCTGTGCTAATTATA
TGTGAATTGATATATATGAAAATTCCGTATGAAAATTTTACCATTTGTGAGAC
Found at i:73046544 original size:22 final size:22
Alignment explanation
Indices: 73046519--73046563 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
73046509 TCTTGAAGAA
73046519 AACTCATTAAAATCACTTACTT
1 AACTCATTAAAATCACTTACTT
73046541 AACTCATTAAAATCACTTACTT
1 AACTCATTAAAATCACTTACTT
73046563 A
1 A
73046564 TGAGTGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (22 bp):
AACTCATTAAAATCACTTACTT
Found at i:73049721 original size:42 final size:42
Alignment explanation
Indices: 73049662--73049746 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
73049652 GATACATAAC
* * *
73049662 CTCATTGACCCGTCCTTCTTTTTCACAAAAAGCACTGGAGCA
1 CTCATCGACCCATCCTTCTTTTTCACAAAAAGCACTAGAGCA
73049704 CTCATCGACCCATCCTTCTTTTTCACAAAAAGCACTAGAGCA
1 CTCATCGACCCATCCTTCTTTTTCACAAAAAGCACTAGAGCA
73049746 C
1 C
73049747 CCCATGGTGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.27
Consensus pattern (42 bp):
CTCATCGACCCATCCTTCTTTTTCACAAAAAGCACTAGAGCA
Found at i:73053268 original size:47 final size:44
Alignment explanation
Indices: 73053162--73053285 Score: 133
Period size: 47 Copynumber: 2.8 Consensus size: 44
73053152 TATGCGTGCT
* * *
73053162 GATGTATGTCCCAGACACGACTTACACTAGCACATCTCTTAGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCACATCTCTTAGCC
* *
73053206 GATGCGTGTCCCAGACACGTCTTACACTGGC-CATCTCTGTCGAGGCT
1 GATGCATGTCCCAGACACGTCTTACACTGGCACATCTCT-T--A-GCC
* * *
73053253 GTTGCATGTCCCAGACATGTCTTACTCTGGCAC
1 GATGCATGTCCCAGACACGTCTTACACTGGCAC
73053286 TCATAGTATG
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
43 7 0.11
44 28 0.42
46 1 0.02
47 29 0.44
48 1 0.02
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCACATCTCTTAGCC
Found at i:73053322 original size:93 final size:93
Alignment explanation
Indices: 73053212--73053422 Score: 225
Period size: 93 Copynumber: 2.3 Consensus size: 93
73053202 AGCCGATGCG
* * ** *
73053212 TGTCCCAGACACGTCTTACACTGGCCATCTCTGTC-GA-GGCTGTTGCATGTCCCAGACAT-GTC
1 TGTCCCAGACATGTCTTACACTGGCC--CT-TGTCGGATGCCAATTCCATGTCCCAGACATGGTC
* *
73053274 TTACT-CTGGCACTCATAGTATGGCAGAAGTA
63 TTA-TACTGGCACTCATACTACGGCAGAAGTA
* *
73053305 TGTCCCAGACATGTCTTAC-CTAGCCCTTGTCTGGATGCCAATTCCATGTCCCAGTCATGGTCTT
1 TGTCCCAGACATGTCTTACACTGGCCCTTGTC-GGATGCCAATTCCATGTCCCAGACATGGTCTT
* *
73053369 ATACTGGCTCTCATACTACGGCCGAAGTA
65 ATACTGGCACTCATACTACGGCAGAAGTA
* *
73053398 TATCCTAGACATGTCTTACACTGGC
1 TGTCCCAGACATGTCTTACACTGGC
73053423 GCACAAATCA
Statistics
Matches: 98, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
89 4 0.04
90 2 0.02
91 2 0.02
92 23 0.23
93 63 0.64
94 4 0.04
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.29
Consensus pattern (93 bp):
TGTCCCAGACATGTCTTACACTGGCCCTTGTCGGATGCCAATTCCATGTCCCAGACATGGTCTTA
TACTGGCACTCATACTACGGCAGAAGTA
Found at i:73053550 original size:15 final size:17
Alignment explanation
Indices: 73053532--73053563 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
73053522 TATAACTTAA
73053532 CAATTC-AT-ACAATAT
1 CAATTCAATGACAATAT
73053547 CAATTCAATGACAATAT
1 CAATTCAATGACAATAT
73053564 GAATACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (17 bp):
CAATTCAATGACAATAT
Found at i:73055687 original size:46 final size:46
Alignment explanation
Indices: 73055606--73055818 Score: 152
Period size: 46 Copynumber: 4.6 Consensus size: 46
73055596 ATGTCGATGC
* * * *
73055606 CATGTCCCAAACATGGTCTTACACT-GAC-ACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTTCGTCTCGTAGGCCAATG
*
73055651 CATGTGCCAGACATGTCTTACACTAGCTTACGTCTCG-AGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGTAGGCCAATG
* * * * *
73055697 CATGTCCCAGACATGTCTTACACCAGCACTCGTCTC-AATGTCAATG
1 CATGTCCCAGACATGTCTTACACTAGC-TTCGTCTCGTAGGCCAATG
* * * * *
73055743 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-TGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGTAGGCCAATG
* *
73055791 CATGTCTCAGACATGGCTTACACTAGCT
1 CATGTCCCAGACATGTCTTACACTAGCT
73055819 CACATGAGTG
Statistics
Matches: 136, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 62 0.46
47 28 0.21
48 20 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGTAGGCCAATG
Found at i:73057219 original size:44 final size:44
Alignment explanation
Indices: 73057151--73057252 Score: 186
Period size: 44 Copynumber: 2.3 Consensus size: 44
73057141 TTTAAACATT
*
73057151 CGCACACTTAGTGCTTAAAGGTTAGCTAATGCTAGAACGATTTC
1 CGCACACTTAGTGCTTAAAAGTTAGCTAATGCTAGAACGATTTC
73057195 CGCACACTTAGTGCTTAAAAGTTAGCTAATGCTAGAACGATTTC
1 CGCACACTTAGTGCTTAAAAGTTAGCTAATGCTAGAACGATTTC
*
73057239 CACACACTTAGTGC
1 CGCACACTTAGTGC
73057253 AAACTCAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (44 bp):
CGCACACTTAGTGCTTAAAAGTTAGCTAATGCTAGAACGATTTC
Found at i:73064523 original size:25 final size:25
Alignment explanation
Indices: 73064495--73064542 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73064485 TTATACCATG
* * *
73064495 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73064520 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73064543 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Done.