Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 248 of 345
Found at i:73064645 original size:20 final size:20
Alignment explanation
Indices: 73064585--73064645 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
73064575 ATAAATATGG
*
73064585 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
73064605 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
73064625 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
73064645 T
1 T
73064646 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:73064722 original size:24 final size:24
Alignment explanation
Indices: 73064695--73064813 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
73064685 GAGGAAGTGA
*
73064695 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
73064719 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
73064742 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
73064766 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73064790 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73064814 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73064764 original size:47 final size:48
Alignment explanation
Indices: 73064695--73064813 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
73064685 GAGGAAGTGA
73064695 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
73064742 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
73064790 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73064814 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:73065065 original size:30 final size:31
Alignment explanation
Indices: 73065005--73065067 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73064995 CGTTTACAGT
73065005 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
73065036 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
73065066 AA
1 AA
73065068 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:73071258 original size:25 final size:25
Alignment explanation
Indices: 73071230--73071277 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73071220 TTATACCATG
* * *
73071230 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73071255 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73071278 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:73071380 original size:20 final size:20
Alignment explanation
Indices: 73071320--73071380 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
73071310 ATAAATATGG
*
73071320 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
73071340 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
73071360 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
73071380 T
1 T
73071381 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:73071457 original size:24 final size:24
Alignment explanation
Indices: 73071430--73071572 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
73071420 GAGGAAGTGA
73071430 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
73071454 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
73071478 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
73071501 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
73071525 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
73071549 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73071573 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:73071523 original size:47 final size:47
Alignment explanation
Indices: 73071430--73071572 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
73071420 GAGGAAGTGA
73071430 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
73071478 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
73071525 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
73071573 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:73071546 original size:71 final size:72
Alignment explanation
Indices: 73071430--73071573 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
73071420 GAGGAAGTGA
*
73071430 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
73071493 CCAGTTAT
65 CCAGTTAT
** * *
73071501 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
73071566 CAGTTAT
66 CAGTTAT
73071573 A
1 A
73071574 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:73071799 original size:30 final size:30
Alignment explanation
Indices: 73071763--73071824 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
73071753 CCGTTACAGT
73071763 AAAGGCTTC-GCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATG-AATATGA
**
73071793 AAAGGCTTCGGCCCAGTGTTATGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAATATGA
73071823 AA
1 AA
73071825 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 18 0.62
31 11 0.38
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGAATATGA
Found at i:73075999 original size:42 final size:41
Alignment explanation
Indices: 73075937--73076148 Score: 149
Period size: 42 Copynumber: 5.0 Consensus size: 41
73075927 CATTGTGTTA
*
73075937 TGTGTAATACCATGTCTGGGACATGGCATCGATATGAGATCC
1 TGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGAT-C
* * *
73075979 TGTGTAAGACCATATTTGGGATATAGCATCGGTATCGATATGAGATTAC
1 TGTGTAAGACCATGTCTGGG----A-CAT-GGCATCGATATGAGA-T-C
* * * * * *
73076028 T-TGTAAGACTATATCTGGGATATGGCTTCGGTATGAGATT
1 TGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATC
* * *** *
73076068 TCGTGTAAGACCTTGTCTAGGATGCGGCATCGATATGTGAT-
1 T-GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATC
* *
73076109 TTTGTAAAGACCATGTCTGGGACATGGCATCGATGTGAGA
1 TGTGT-AAGACCATGTCTGGGACATGGCATCGATATGAGA
73076149 CTTCGTGTGA
Statistics
Matches: 131, Mismatches: 29, Indels: 21
0.72 0.16 0.12
Matches are distributed among these distances:
40 4 0.03
41 29 0.22
42 58 0.44
43 2 0.02
44 1 0.01
46 1 0.01
47 3 0.02
48 30 0.23
49 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (41 bp):
TGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATC
Found at i:73076020 original size:48 final size:48
Alignment explanation
Indices: 73075964--73076061 Score: 135
Period size: 48 Copynumber: 2.0 Consensus size: 48
73075954 GGGACATGGC
* *
73075964 ATCGATATGAGA-TCCTGTGTAAGACCATATTTGGGATATAGCATCGGT
1 ATCGATATGAGATTACT-TGTAAGACCATATCTGGGATATAGCATCGGT
* * *
73076012 ATCGATATGAGATTACTTGTAAGACTATATCTGGGATATGGCTTCGGT
1 ATCGATATGAGATTACTTGTAAGACCATATCTGGGATATAGCATCGGT
73076060 AT
1 AT
73076062 GAGATTTCGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
48 41 0.93
49 3 0.07
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (48 bp):
ATCGATATGAGATTACTTGTAAGACCATATCTGGGATATAGCATCGGT
Found at i:73076159 original size:12 final size:12
Alignment explanation
Indices: 73076142--73076174 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
73076132 ATGGCATCGA
73076142 TGTGAGACTTCG
1 TGTGAGACTTCG
73076154 TGTGAGACTTCG
1 TGTGAGACTTCG
*
73076166 TGTAAGACT
1 TGTGAGACT
73076175 ATAGTTGGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.33
Consensus pattern (12 bp):
TGTGAGACTTCG
Found at i:73078014 original size:43 final size:43
Alignment explanation
Indices: 73077947--73078073 Score: 134
Period size: 45 Copynumber: 2.9 Consensus size: 43
73077937 CTTTCTCAAA
* * *
73077947 TCACCGGCATT-TCGCCTGTTAGGCTTG-AGGCCCGATATCAGT-
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGA-AT-AGTC
73077989 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTACC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT--C
** * *
73078034 TCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
73078074 ATCAAGTCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 14 0.19
43 15 0.21
44 8 0.11
45 36 0.49
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTC
Found at i:73078451 original size:43 final size:43
Alignment explanation
Indices: 73078403--73078526 Score: 198
Period size: 43 Copynumber: 2.9 Consensus size: 43
73078393 CCGGCATTAC
* * *
73078403 GCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACCAA
73078446 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACCAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACCAA
*
73078489 GCCTGCTAGGCACGAAGGCCCGAATATA-AT-ACCAGCAC
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCAC
73078527 TAGGCCTGTG
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
41 8 0.10
42 2 0.03
43 67 0.87
ACGTcount: A:0.31, C:0.34, G:0.23, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACCAA
Found at i:73084230 original size:2 final size:2
Alignment explanation
Indices: 73084179--73084216 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
73084169 GCTATATATA
73084179 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
73084217 GCATTTAGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:73091695 original size:18 final size:18
Alignment explanation
Indices: 73091655--73091689 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73091645 ACTTAAAAAA
* *
73091655 GAAAATAAAGATAATAGT
1 GAAAATAAAAATAATAAT
73091673 GAAAATAAAAATAATAA
1 GAAAATAAAAATAATAA
73091690 ATAAAAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (18 bp):
GAAAATAAAAATAATAAT
Found at i:73092961 original size:13 final size:15
Alignment explanation
Indices: 73092945--73092977 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
73092935 ATTACTCCCC
73092945 AAAAATA-GCATGG-
1 AAAAATATGCATGGT
73092958 AAAAATATGCATGGT
1 AAAAATATGCATGGT
73092973 AAAAA
1 AAAAA
73092978 ATAGAGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 6 0.33
15 5 0.28
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (15 bp):
AAAAATATGCATGGT
Found at i:73093138 original size:23 final size:23
Alignment explanation
Indices: 73093111--73093157 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
73093101 AGTGAATGAA
73093111 TGCATATGGGTAAGCATGAAATC
1 TGCATATGGGTAAGCATGAAATC
73093134 TGCATATGGGTAAGCATGAAATC
1 TGCATATGGGTAAGCATGAAATC
73093157 T
1 T
73093158 ATGGAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.28
Consensus pattern (23 bp):
TGCATATGGGTAAGCATGAAATC
Found at i:73096181 original size:81 final size:81
Alignment explanation
Indices: 73096086--73096576 Score: 668
Period size: 81 Copynumber: 6.1 Consensus size: 81
73096076 AAAGTACTCC
* *
73096086 CGATTTACAGAATTACCGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTCGATTTTTAA
1 CGATTTACAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTCGATTTATAA
73096150 AATTACCGTTTTACCCT
65 AATTACCGTTTTACCCT
* * * * * *
73096167 CGATTTACAAAATTACCGTTTTACCCTCAGTCTACAGAATTACCATTTTACCCTTGATTTACAAA
1 CGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTATAAA
*
73096232 ATTACTGTTTTACCCT
66 ATTACCGTTTTACCCT
* * *
73096248 C-AGTTTACAAAATTACTGTTTTACCCTC-GATTTATAGAATTACCGTTTTACCCTCGATTTGTA
1 CGA-TTTACAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTCGATTTATA
73096311 AAATTACCGTTTTACCCT
64 AAATTACCGTTTTACCCT
*** * *
73096329 CGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTAATTTACCCCCGATTTATAGA
1 CGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTATAAA
*
73096394 ATTACCATTTTACCCT
66 ATTACCGTTTTACCCT
* *
73096410 C-AGTTTACAGAATTACTATTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTCGATTTGTA
1 CGA-TTTACAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTCGATTTATA
73096473 AAATTACCGTTTTACCCT
64 AAATTACCGTTTTACCCT
* * * * *
73096491 TGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTATAGA
1 CGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTATAAA
73096556 ATTACCGTTTTACCCT
66 ATTACCGTTTTACCCT
*
73096572 TGATT
1 CGATT
73096577 GTGAAATTAC
Statistics
Matches: 362, Mismatches: 39, Indels: 18
0.86 0.09 0.04
Matches are distributed among these distances:
80 4 0.01
81 353 0.98
82 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (81 bp):
CGATTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTATAAA
ATTACCGTTTTACCCT
Found at i:73096458 original size:27 final size:27
Alignment explanation
Indices: 73096086--73096576 Score: 596
Period size: 27 Copynumber: 18.2 Consensus size: 27
73096076 AAAGTACTCC
73096086 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73096113 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
73096140 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73096167 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73096194 C-AGTCTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
73096221 TGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73096248 C-AGTTTACAAAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
73096275 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
73096302 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73096329 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*** *
73096356 C-AGTTTACAGAATTACTAATTTACCCC
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
73096383 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73096410 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
73096437 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
73096464 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
73096491 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73096518 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
73096545 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73096572 TGATT
1 CGATT
73096577 GTGAAATTAC
Statistics
Matches: 402, Mismatches: 52, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.01
27 392 0.98
28 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:73096644 original size:54 final size:54
Alignment explanation
Indices: 73096581--73096776 Score: 252
Period size: 54 Copynumber: 3.6 Consensus size: 54
73096571 TTGATTGTGA
* ** *
73096581 AATTACTGAAATACCCCTGTAGGGTAAAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAG
* * * *
73096635 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAG
73096689 AATTA-TCGAAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTA-AAATTACCGAAATACCCCTGTAGGGTAG
* * * *
73096743 AATTACCGAGATACCTTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAAAATTACC
73096777 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
53 4 0.03
54 116 0.95
55 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAG
Found at i:73096698 original size:81 final size:81
Alignment explanation
Indices: 73096589--73096774 Score: 246
Period size: 81 Copynumber: 2.3 Consensus size: 81
73096579 GAAATTACTG
* * * *
73096589 AAATACCCCTGTAGGGTAAAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTA
1 AAATACCCCTGTAGGGTAAAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
73096654 TAGGATAGAATTACCA
66 TAGGATAGAATTACCA
* * * *
73096670 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAAAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
* *
73096735 TAGGGTAGAATTACCG
66 TAGGATAGAATTACCA
* ** *
73096751 AGATACCTTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAAAATTA
73096775 CCATTTTGCC
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAAAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
TAGGATAGAATTACCA
Found at i:73096776 original size:27 final size:27
Alignment explanation
Indices: 73096580--73096776 Score: 198
Period size: 27 Copynumber: 7.3 Consensus size: 27
73096570 CTTGATTGTG
* *
73096580 AAATTACTGAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCTTGTAGGGTA
** * *
73096607 AAATTTTCGAAATACCCCTATAGGGTA
1 AAATTACCGAAATACCCTTGTAGGGTA
* * * *
73096634 GAATTACTGAAATACCCTTATAGGATA
1 AAATTACCGAAATACCCTTGTAGGGTA
* * *
73096661 GAATTACCAAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCTTGTAGGGTA
* *
73096688 GAATTATCGAAATACCCTTGTAGGGTA
1 AAATTACCGAAATACCCTTGTAGGGTA
*
73096715 GAAA-TACCGAAATACCCCTGTAGGGTA
1 -AAATTACCGAAATACCCTTGTAGGGTA
* * * *
73096742 GAATTACCGAGATACCTTTGTGGGGTA
1 AAATTACCGAAATACCCTTGTAGGGTA
73096769 AAATTACC
1 AAATTACC
73096777 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 2 0.01
27 137 0.97
28 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATTACCGAAATACCCTTGTAGGGTA
Found at i:73097013 original size:27 final size:26
Alignment explanation
Indices: 73096975--73097057 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
73096965 CGGTGGAAGC
73096975 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
73097002 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * **
73097028 GTATTTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
73097055 GTT
1 GTT
73097058 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:73097179 original size:22 final size:22
Alignment explanation
Indices: 73097145--73097203 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
73097135 CCCGTTATTA
* *
73097145 ATGGCTCTATGCCAACTTAAAT
1 ATGGCTTTGTGCCAACTTAAAT
* * *
73097167 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACTTAAAT
* *
73097189 ATGCCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
73097204 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACTTAAAT
Found at i:73097390 original size:27 final size:27
Alignment explanation
Indices: 73097368--73097441 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
73097358 TAGGTGGGTT
*
73097368 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
73097395 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
73097422 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
73097442 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:73097568 original size:6 final size:6
Alignment explanation
Indices: 73097559--73097744 Score: 188
Period size: 6 Copynumber: 30.8 Consensus size: 6
73097549 TTGCATTCAC
* *
73097559 ATTCTG ATTCTG ATTCT- ATTACTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
73097607 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
73097655 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
73097704 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
73097745 CATTTTGGTT
Statistics
Matches: 152, Mismatches: 13, Indels: 30
0.78 0.07 0.15
Matches are distributed among these distances:
5 13 0.09
6 127 0.84
7 10 0.07
8 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:73097595 original size:30 final size:30
Alignment explanation
Indices: 73097559--73097744 Score: 267
Period size: 30 Copynumber: 6.4 Consensus size: 30
73097549 TTGCATTCAC
*
73097559 ATTCTGATTCTGATTCTATTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
73097589 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
73097619 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
73097643 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
73097674 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
73097704 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
73097734 ATTCTGATTCT
1 ATTCTGATTCT
73097745 CATTTTGGTT
Statistics
Matches: 141, Mismatches: 8, Indels: 14
0.87 0.05 0.09
Matches are distributed among these distances:
24 23 0.16
26 1 0.01
29 1 0.01
30 92 0.65
31 24 0.17
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:73097762 original size:30 final size:30
Alignment explanation
Indices: 73097559--73097765 Score: 232
Period size: 30 Copynumber: 7.1 Consensus size: 30
73097549 TTGCATTCAC
* * *
73097559 ATTCTGATTCTGATTCTATTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
73097589 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
73097619 ATTCTGATTCTGATTCTGTT----A--CTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
73097643 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
73097674 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
**
73097704 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
73097734 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
73097764 AT
1 AT
73097766 AATGTTTCTT
Statistics
Matches: 158, Mismatches: 9, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
24 22 0.14
26 1 0.01
29 2 0.01
30 105 0.66
31 28 0.18
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:73105172 original size:40 final size:40
Alignment explanation
Indices: 73105127--73105294 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73105117 CGGAATACAA
73105127 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
73105167 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73105207 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
73105247 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
73105287 CCGGATAT
1 CCGGATAT
73105295 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73111669 original size:93 final size:93
Alignment explanation
Indices: 73111557--73111728 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73111547 GCCCATAAGT
* *
73111557 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73111622 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
73111650 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73111715 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
73111729 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73111724 original size:46 final size:46
Alignment explanation
Indices: 73111549--73111724 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
73111539 TGTAACCCGC
* * *
73111549 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
73111595 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
73111645 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
73111688 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73111725 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:73114144 original size:29 final size:29
Alignment explanation
Indices: 73114105--73114192 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
73114095 CAAAGATAAC
*
73114105 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
73114134 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
73114163 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
73114193 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:73114163 original size:15 final size:15
Alignment explanation
Indices: 73114105--73114183 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
73114095 CAAAGATAAC
*
73114105 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73114119 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
73114134 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
73114148 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
73114163 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
73114178 AAGAAA
1 AAGAAA
73114184 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73114192 original size:15 final size:15
Alignment explanation
Indices: 73114116--73114192 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
73114106 AGAAAACCGA
73114116 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
73114131 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
73114145 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
73114159 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
73114175 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
73114190 ATA
1 ATA
73114193 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:73117253 original size:93 final size:93
Alignment explanation
Indices: 73117141--73117312 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73117131 GCCCATAAGT
* *
73117141 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73117206 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
73117234 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73117299 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
73117313 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73117308 original size:46 final size:46
Alignment explanation
Indices: 73117133--73117308 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
73117123 TGTAACCCGC
* * *
73117133 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
73117179 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
73117229 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
73117272 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73117309 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:73121596 original size:40 final size:40
Alignment explanation
Indices: 73121551--73121718 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73121541 CGGAATACAA
73121551 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
73121591 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73121631 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
73121671 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
73121711 CCGGATAT
1 CCGGATAT
73121719 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73125083 original size:43 final size:43
Alignment explanation
Indices: 73124988--73125110 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 43
73124978 ATCAAGATGT
* * * * *
73124988 GATTACATGTAAGACCATGTCTGGGACATTGCCATTGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
73125031 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGC
* * * * * *
73125074 GATTTCGTGTAAAACCTTGTCCGGGATAGTGGCATCG
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
73125111 ATATATAATA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
Found at i:73132257 original size:14 final size:16
Alignment explanation
Indices: 73132233--73132265 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
73132223 ATTTTCTGTG
73132233 TTTATTATGTGT-AAA
1 TTTATTATGTGTGAAA
73132248 TTTA-TATGTGTGAAA
1 TTTATTATGTGTGAAA
73132263 TTT
1 TTT
73132266 TTGTGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGAAA
Found at i:73132867 original size:28 final size:26
Alignment explanation
Indices: 73132828--73132879 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
73132818 GAATTTGAGT
**
73132828 AATTAGGGCTAATTTGTAAAATAATA
1 AATTAGGGCTAAAATGTAAAATAATA
73132854 AATTGAGGGACTAAAATGTAAAATAA
1 AATT-AGGG-CTAAAATGTAAAATAA
73132880 ATGAAATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 4 0.18
28 14 0.64
ACGTcount: A:0.50, C:0.04, G:0.17, T:0.29
Consensus pattern (26 bp):
AATTAGGGCTAAAATGTAAAATAATA
Found at i:73133511 original size:56 final size:56
Alignment explanation
Indices: 73133424--73133557 Score: 214
Period size: 56 Copynumber: 2.4 Consensus size: 56
73133414 CATGGCATCG
* *
73133424 ATATATGTGTGCGAGTAAGACCAAGTTTAATACATTGGCATCAATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCAAGTTTAATACATTGGCATCAATATGTGATTACA
* * *
73133480 TTATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTACA
1 ATATATGTGTGCGAGTAAGACCAAGTTTAATACATTGGCATCAATATGTGATTACA
*
73133536 ATATATGTGTGTGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
73133558 CTACCTGGGA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCAAGTTTAATACATTGGCATCAATATGTGATTACA
Found at i:73137116 original size:48 final size:49
Alignment explanation
Indices: 73137064--73137185 Score: 165
Period size: 49 Copynumber: 2.5 Consensus size: 49
73137054 GTTGACGTCG
*
73137064 TGTCCCAGATAGGTCTTACACTGACTCCCAT-AATCGAGGCCGATGCCA
1 TGTCCCAGATAGGTCTTACACTGACTCCCATCAATCGAGGCAGATGCCA
* * * * * *
73137112 TGTCCCAGATAGGTCTTACATTGGCTCTCATCTATCGATGTAGATGCCA
1 TGTCCCAGATAGGTCTTACACTGACTCCCATCAATCGAGGCAGATGCCA
*
73137161 TGTCCCAGACAGGTCTTACACTGAC
1 TGTCCCAGATAGGTCTTACACTGAC
73137186 ACACAACAAG
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
48 28 0.44
49 35 0.56
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
TGTCCCAGATAGGTCTTACACTGACTCCCATCAATCGAGGCAGATGCCA
Found at i:73137269 original size:48 final size:45
Alignment explanation
Indices: 73137154--73137318 Score: 120
Period size: 46 Copynumber: 3.6 Consensus size: 45
73137144 TATCGATGTA
* * ** * *
73137154 GATGCCATGTCCCAGACAGGTCTTACACT-GACACACAACAA-GCT
1 GATG-CATGTCCCAGACATGTCTTACACTAGACTCATGATAAGGCC
* * ** *
73137198 GACGCCATGTCCCAAACGGGTCTTACACTAG-CTTATGTATCCCAAGGCC
1 GATG-CATGTCCCAGACATGTCTTACACTAGACTCATG-AT---AAGGCC
** *
73137247 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATGATGTGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAG-ACTCATGATAAGGCC
73137293 GATGCATGTCCCAGACATGTCTTACA
1 GATGCATGTCCCAGACATGTCTTACA
73137319 TTGGCTCACA
Statistics
Matches: 96, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
44 28 0.29
45 2 0.02
46 29 0.30
48 25 0.26
49 7 0.07
50 5 0.05
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.24
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGACTCATGATAAGGCC
Found at i:73141096 original size:49 final size:49
Alignment explanation
Indices: 73141018--73141252 Score: 337
Period size: 49 Copynumber: 4.8 Consensus size: 49
73141008 TAGCCGAAGG
* *
73141018 TATCTGGTACACATAATAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
73141067 AATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCACAGT
1 TATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
*
73141118 TTTC-AGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTA-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
73141167 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
1 TATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
73141216 TATCCAGTACACGTAGTAGCCTGCACTTAGTACTACA
1 TATCTAGTACACATAGTAGCCTGCACTTAGTACTACA
73141253 TACGTGATCT
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
49 121 0.73
50 3 0.02
51 41 0.25
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (49 bp):
TATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:73141141 original size:100 final size:99
Alignment explanation
Indices: 73141023--73141252 Score: 347
Period size: 100 Copynumber: 2.3 Consensus size: 99
73141013 GAAGGTATCT
* *
73141023 GGTACACATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACATAGTAGCC
* * * *
73141088 TGCACTTAGTACTACACATGTGATCACAGTT-TTCA
66 TGCACTTAGTACTACACATG-CAAC-CAATTATCCA
* *
73141123 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACATAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACATAGTAGCC
73141188 TGCACTTAGTACTACACATGCAACCAATTATCCA
66 TGCACTTAGTACTACACATGCAACCAATTATCCA
*
73141222 -GTACACGTAGTAGCCTGCACTTAGTACTACA
1 GGTACACATAGTAGCCTGCACTTAGTACTACA
73141253 TACGTGATCT
Statistics
Matches: 120, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
98 34 0.28
99 5 0.04
100 81 0.68
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (99 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTAGTACACATAGTAGCC
TGCACTTAGTACTACACATGCAACCAATTATCCA
Found at i:73141157 original size:26 final size:26
Alignment explanation
Indices: 73141125--73141206 Score: 73
Period size: 26 Copynumber: 3.3 Consensus size: 26
73141115 AGTTTTCAGG
73141125 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * * **
73141151 TACACAT-G-CGAC--CAATTATCTGG
1 TACACATAGTAGCCTGCACTTA-GTAC
73141174 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
73141200 TACACAT
1 TACACAT
73141207 GCAACCAATT
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
22 5 0.13
23 8 0.21
24 3 0.08
25 3 0.08
26 15 0.38
27 5 0.13
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:73143773 original size:15 final size:15
Alignment explanation
Indices: 73143717--73143781 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
73143707 TAAAGATAAC
*
73143717 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73143731 AAGAAATCCA-AGAT-
1 AAGAAATCCAGA-ATA
* *
73143745 AGGAAAACCCAGAATA
1 AAG-AAATCCAGAATA
73143761 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
73143776 AAGAAA
1 AAGAAA
73143782 CCCAAGATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 11 0.27
15 27 0.66
16 3 0.07
ACGTcount: A:0.62, C:0.14, G:0.15, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73143783 original size:30 final size:29
Alignment explanation
Indices: 73143717--73143785 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
73143707 TAAAGATAAC
*
73143717 AAGAAAACC-GAATAAAGAAATCCAAGAT
1 AAGAAACCCAGAATAAAGAAATCCAAGAT
*
73143745 AGGAAAACCCAGAATAAAGAAATCC-AGAAT
1 AAG-AAACCCAGAATAAAGAAATCCAAG-AT
73143775 AAAGAAACCCA
1 -AAGAAACCCA
73143786 AGATACGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
28 2 0.06
29 7 0.21
30 23 0.68
31 2 0.06
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (29 bp):
AAGAAACCCAGAATAAAGAAATCCAAGAT
Found at i:73146842 original size:49 final size:49
Alignment explanation
Indices: 73146777--73146959 Score: 224
Period size: 49 Copynumber: 3.7 Consensus size: 49
73146767 CAAAGCTATT
* * *
73146777 TGGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
* * * *
73146826 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATC
* *
73146877 GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
* * **
73146926 CGATACATGTAGTAG-CTGCACTTAGTACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
73146960 CATGATCTCA
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
48 19 0.17
49 52 0.46
50 2 0.02
51 41 0.36
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
Found at i:73146893 original size:100 final size:99
Alignment explanation
Indices: 73146778--73146966 Score: 306
Period size: 100 Copynumber: 1.9 Consensus size: 99
73146768 AAAGCTATTT
* *
73146778 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
1 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGATACACATAGTAG-C
*
73146843 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
65 TGCACTTAGTACTACACACATGATCACAGTTTTCG
* * **
73146878 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACATGTAGTAGCT
1 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGATACACATAGTAGCT
73146943 GCACTTAGTACTACACACATGATC
66 GCACTTAGTACTACACACATGATC
73146967 TCACAATAGT
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 25 0.30
100 57 0.70
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGATACACATAGTAGCT
GCACTTAGTACTACACACATGATCACAGTTTTCG
Found at i:73149051 original size:2 final size:2
Alignment explanation
Indices: 73149044--73149077 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
73149034 CGGCTCTACC
73149044 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73149078 GTTTGCACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73149882 original size:40 final size:40
Alignment explanation
Indices: 73149786--73149938 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
73149776 CGAATGGTAT
* * * *
73149786 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
73149827 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
73149867 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
73149907 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
73149939 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:73152415 original size:21 final size:22
Alignment explanation
Indices: 73152386--73152429 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
73152376 TGGCAGAAAT
*
73152386 ACAATACAA-GAATAACGAACAA
1 ACAATACAACAAATAA-GAACAA
73152408 ACAA-ACAACAAATAAGAACAA
1 ACAATACAACAAATAAGAACAA
73152429 A
1 A
73152430 GTATAAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.68, C:0.18, G:0.07, T:0.07
Consensus pattern (22 bp):
ACAATACAACAAATAAGAACAA
Found at i:73159273 original size:14 final size:14
Alignment explanation
Indices: 73159256--73159309 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
73159246 CCCAAACTCA
73159256 GAACCTCAAACCTT
1 GAACCTCAAACCTT
*
73159270 GAA-CTCAAACCAT
1 GAACCTCAAACCTT
* *
73159283 GAACCTTAAACTTT
1 GAACCTCAAACCTT
* *
73159297 TAACCTCGAACCT
1 GAACCTCAAACCT
73159310 CGAGGTTGGG
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
13 12 0.39
14 19 0.61
ACGTcount: A:0.37, C:0.31, G:0.07, T:0.24
Consensus pattern (14 bp):
GAACCTCAAACCTT
Found at i:73160279 original size:30 final size:30
Alignment explanation
Indices: 73160243--73160302 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
73160233 TTCCCAAGCC
*
73160243 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
73160273 TAGGGGCAAAAATGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
73160303 CGTATTAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:73165049 original size:369 final size:369
Alignment explanation
Indices: 73164370--73165113 Score: 1452
Period size: 369 Copynumber: 2.0 Consensus size: 369
73164360 TTGACTATCG
73164370 ACAGTTAAACAAGGTGACAATCAAAAACAAGTATCCGTTGCCAAGGATTGATGATTTGTTTGATC
1 ACAGTTAAACAAGGTGACAATCAAAAACAAGTATCCGTTGCCAAGGATTGATGATTTGTTTGATC
73164435 AGCTAAAAGGAGCGACATGGTTTTCAAAGATTGACTTGAGATCTGGGTATTACCAGCTGCGAGTA
66 AGCTAAAAGGAGCGACATGGTTTTCAAAGATTGACTTGAGATCTGGGTATTACCAGCTGCGAGTA
*
73164500 AAAGAGTCAGATGTGCCTATAACTGCTTTTAGAACAAGGTATGGTCATTATGAGTTTTTAGTTAT
131 AAAGAGTCAGATGTGCCTATAACTGCTTTTAGAACAAGGTACGGTCATTATGAGTTTTTAGTTAT
73164565 GCCATTCGGGTTGACAAATGCTCCTGCTGTGTTTATGGATTTAATGAATCGCATATTTCAGCCAT
196 GCCATTCGGGTTGACAAATGCTCCTGCTGTGTTTATGGATTTAATGAATCGCATATTTCAGCCAT
73164630 ACTTGAACAAATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAG
261 ACTTGAACAAATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAG
73164695 CATGCTGAGCATTTGAGGATAGTTTTGCAAACTTTGAAAGATAA
326 CATGCTGAGCATTTGAGGATAGTTTTGCAAACTTTGAAAGATAA
73164739 ACAGTTAAACAAGGTGACAATCAAAAACAAGTATCCGTTGCCAAGGATTGATGATTTGTTTGATC
1 ACAGTTAAACAAGGTGACAATCAAAAACAAGTATCCGTTGCCAAGGATTGATGATTTGTTTGATC
* *
73164804 AGCTAAAAGGAGCGACATGGTTTTCAAAGATTGACTTTAGATCTGGGTATTACCATCTGCGAGTA
66 AGCTAAAAGGAGCGACATGGTTTTCAAAGATTGACTTGAGATCTGGGTATTACCAGCTGCGAGTA
73164869 AAAGAGTCAGATGTGCCTATAACTGCTTTTAGAACAAGGTACGGTCATTATGAGTTTTTAGTTAT
131 AAAGAGTCAGATGTGCCTATAACTGCTTTTAGAACAAGGTACGGTCATTATGAGTTTTTAGTTAT
*
73164934 GCCATTCGGGTTGACAAATGCTCCTGCTGTGTTTATGGATTTAATGAATCGCATATTTCGGCCAT
196 GCCATTCGGGTTGACAAATGCTCCTGCTGTGTTTATGGATTTAATGAATCGCATATTTCAGCCAT
73164999 ACTTGAACAAATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAG
261 ACTTGAACAAATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAG
73165064 CATGCTGAGCATTTGAGGATAGTTTTGCAAACTTTGAAAGATAA
326 CATGCTGAGCATTTGAGGATAGTTTTGCAAACTTTGAAAGATAA
73165108 ACAGTT
1 ACAGTT
73165114 GTATGCTAAG
Statistics
Matches: 371, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
369 371 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (369 bp):
ACAGTTAAACAAGGTGACAATCAAAAACAAGTATCCGTTGCCAAGGATTGATGATTTGTTTGATC
AGCTAAAAGGAGCGACATGGTTTTCAAAGATTGACTTGAGATCTGGGTATTACCAGCTGCGAGTA
AAAGAGTCAGATGTGCCTATAACTGCTTTTAGAACAAGGTACGGTCATTATGAGTTTTTAGTTAT
GCCATTCGGGTTGACAAATGCTCCTGCTGTGTTTATGGATTTAATGAATCGCATATTTCAGCCAT
ACTTGAACAAATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAG
CATGCTGAGCATTTGAGGATAGTTTTGCAAACTTTGAAAGATAA
Found at i:73168203 original size:30 final size:29
Alignment explanation
Indices: 73168157--73168215 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
73168147 TTCCCGAGCC
*
73168157 TAGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAATGTAATTATGCAAAAGTT
* *
73168186 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAATGTAATTATGCAAAAGTT
73168216 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (29 bp):
TAGGGGAAAAATGTAATTATGCAAAAGTT
Found at i:73175517 original size:11 final size:11
Alignment explanation
Indices: 73175497--73175533 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
73175487 ATTTATTTCC
73175497 TTTC-CCTTTA
1 TTTCTCCTTTA
73175507 TTTCTCCTTTA
1 TTTCTCCTTTA
73175518 TTTCTCCTTTA
1 TTTCTCCTTTA
73175529 TTTCT
1 TTTCT
73175534 TTTTCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.15
11 22 0.85
ACGTcount: A:0.08, C:0.27, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTCTCCTTTA
Found at i:73175540 original size:6 final size:6
Alignment explanation
Indices: 73175529--73175553 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
73175519 TTCTCCTTTA
73175529 TTTCTT TTTCTT TTTCTT TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT T
73175554 CTTTTCTTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:73183426 original size:40 final size:40
Alignment explanation
Indices: 73183381--73183460 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
73183371 GTTGAAAGTA
* *
73183381 TGTCTCTTTAACAACTGATGTTACCGAAAAATGACGCATC
1 TGTCTCTTTAACAACCGATGTTACCAAAAAATGACGCATC
73183421 TGTCTCTTTAACAACCGATGTTACCAAAAAATGACGCATC
1 TGTCTCTTTAACAACCGATGTTACCAAAAAATGACGCATC
73183461 CCTTTTAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.29
Consensus pattern (40 bp):
TGTCTCTTTAACAACCGATGTTACCAAAAAATGACGCATC
Found at i:73186347 original size:17 final size:16
Alignment explanation
Indices: 73186316--73186346 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73186306 TTCAAAATAC
*
73186316 CTTAAACCCTAAAAAT
1 CTTAAAACCTAAAAAT
73186332 CTTAAAACCTAAAAA
1 CTTAAAACCTAAAAA
73186347 AAAAATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (16 bp):
CTTAAAACCTAAAAAT
Found at i:73187128 original size:21 final size:21
Alignment explanation
Indices: 73187100--73187150 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
73187090 TACTCCATAC
73187100 TAATTTTTATGAACTTT-TTT
1 TAATTTTTATGAACTTTATTT
*
73187120 TATATTTTT-TGAATTTTAATTT
1 TA-ATTTTTATGAACTTT-ATTT
73187142 TAATTTTTA
1 TAATTTTTA
73187151 AATTATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 9 0.35
21 12 0.46
22 5 0.19
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (21 bp):
TAATTTTTATGAACTTTATTT
Found at i:73190364 original size:14 final size:15
Alignment explanation
Indices: 73190345--73190373 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73190335 ATATTTAGAT
73190345 AAATTA-TTAATTGA
1 AAATTATTTAATTGA
73190359 AAATTATTTAATTGA
1 AAATTATTTAATTGA
73190374 TAAGATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
AAATTATTTAATTGA
Found at i:73190873 original size:21 final size:21
Alignment explanation
Indices: 73190848--73190995 Score: 93
Period size: 21 Copynumber: 7.0 Consensus size: 21
73190838 TTTACTTTCC
*
73190848 GTTTAGCTCTCATGAGCTTCT
1 GTTTAGCTCTTATGAGCTTCT
* * *
73190869 GTTTAACTCATATGAGTTTCCT
1 GTTTAGCTCTTATGAGCTT-CT
*
73190891 -TTCAGCTC-TATTGAGCTTCT
1 GTTTAGCTCTTA-TGAGCTTCT
* * * * *
73190911 GTTTAACCCTTATGGGTTTCC
1 GTTTAGCTCTTATGAGCTTCT
* *
73190932 GTTCAGCTCTTACGAGCTTCT
1 GTTTAGCTCTTATGAGCTTCT
* * * * *
73190953 GTTCAACCCTTATGGGTTTCT
1 GTTTAGCTCTTATGAGCTTCT
* *
73190974 GTTTAGGTCTCATGAGCTTCT
1 GTTTAGCTCTTATGAGCTTCT
73190995 G
1 G
73190996 ATCATCTTTC
Statistics
Matches: 91, Mismatches: 32, Indels: 8
0.69 0.24 0.06
Matches are distributed among these distances:
20 4 0.04
21 83 0.91
22 4 0.04
ACGTcount: A:0.16, C:0.23, G:0.19, T:0.43
Consensus pattern (21 bp):
GTTTAGCTCTTATGAGCTTCT
Found at i:73190991 original size:42 final size:42
Alignment explanation
Indices: 73190843--73190995 Score: 191
Period size: 42 Copynumber: 3.6 Consensus size: 42
73190833 TCATGTTTAC
* * * *
73190843 TTTCCGTTTAGCTCTCATGAGCTTCTGTTTAACTCATATGAG
1 TTTCCGTTCAGCTCTCATGAGCTTCTGTTTAACCCTTATGGG
*
73190885 TTTCCTTTCAGCTCT-ATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTCTCA-TGAGCTTCTGTTTAACCCTTATGGG
* * *
73190927 TTTCCGTTCAGCTCTTACGAGCTTCTGTTCAACCCTTATGGG
1 TTTCCGTTCAGCTCTCATGAGCTTCTGTTTAACCCTTATGGG
* * *
73190969 TTTCTGTTTAGGTCTCATGAGCTTCTG
1 TTTCCGTTCAGCTCTCATGAGCTTCTG
73190996 ATCATCTTTC
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 94 0.98
43 1 0.01
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.43
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTCATGAGCTTCTGTTTAACCCTTATGGG
Found at i:73193220 original size:17 final size:17
Alignment explanation
Indices: 73193198--73193257 Score: 84
Period size: 17 Copynumber: 3.5 Consensus size: 17
73193188 AATTTTCCAA
73193198 AGTAATAATGTAATATT
1 AGTAATAATGTAATATT
*
73193215 AGTAATAATATAATATT
1 AGTAATAATGTAATATT
* *
73193232 AGTAATAACGTAATATA
1 AGTAATAATGTAATATT
73193249 AGTAGATAA
1 AGTA-ATAA
73193258 AAAATTGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
17 34 0.89
18 4 0.11
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.35
Consensus pattern (17 bp):
AGTAATAATGTAATATT
Found at i:73193593 original size:107 final size:104
Alignment explanation
Indices: 73193476--73193760 Score: 366
Period size: 91 Copynumber: 2.8 Consensus size: 104
73193466 CTTCAATTAA
*
73193476 CTTCAATTAACTAACTTTAAAGTTTAAACTATAGTTTAACATACTATTTTTTTTTTGTTTAATTT
1 CTTCAATTAACTAACTTTAAAGTTTAAACTGTAGTTTAACATAC-A-TTTTTTTTTGTTTAATTT
73193541 ATGCTGTTGTATTTGTACTATTATATATTATATTAATTTAGG
64 ATGCTGTTGTA-TTGTACTATTATATATTATATTAATTTAGG
* * * *
73193583 CTTCAATTAACTAACTTTAAATTTTAAACGGTAGCTTAACAAAC-TTTTTTTTTGTTTAATTTAT
1 CTTCAATTAACTAACTTTAAAGTTTAAACTGTAGTTTAACATACATTTTTTTTTGTTTAATTTAT
73193647 GC-----TATTGTAC-------TATTATATTAATTTAGG
66 GCTGTTGTATTGTACTATTATATATTATATTAATTTAGG
*
73193674 CTTCAATTAACTAACTTTAAAGTTTAAAATGTAGTTTAACATAC--TTTTTTTTGTTTAATTTAT
1 CTTCAATTAACTAACTTTAAAGTTTAAACTGTAGTTTAACATACATTTTTTTTTGTTTAATTTAT
*
73193737 GCTGTTGTACCTGTACTATTATAT
66 GCTGTTGTA-TTGTACTATTATAT
73193761 TAATTAATTT
Statistics
Matches: 154, Mismatches: 11, Indels: 30
0.79 0.06 0.15
Matches are distributed among these distances:
90 21 0.14
91 56 0.36
95 2 0.01
96 5 0.03
98 6 0.04
99 2 0.01
103 1 0.01
104 22 0.14
107 39 0.25
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.50
Consensus pattern (104 bp):
CTTCAATTAACTAACTTTAAAGTTTAAACTGTAGTTTAACATACATTTTTTTTTGTTTAATTTAT
GCTGTTGTATTGTACTATTATATATTATATTAATTTAGG
Found at i:73199302 original size:17 final size:18
Alignment explanation
Indices: 73199280--73199327 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
73199270 ATCGAAGGAG
73199280 TAAAAAGAAGAAAAAA-A
1 TAAAAAGAAGAAAAAAGA
*
73199297 TAAAAAGAAAGAAAAAAGG
1 TAAAAAG-AAGAAAAAAGA
73199316 TAAAGAAGAAGA
1 TAAA-AAGAAGA
73199328 GTTCAGAACG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 7 0.26
18 9 0.33
19 8 0.30
20 3 0.11
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (18 bp):
TAAAAAGAAGAAAAAAGA
Found at i:73210517 original size:104 final size:103
Alignment explanation
Indices: 73210224--73210524 Score: 314
Period size: 103 Copynumber: 2.9 Consensus size: 103
73210214 GGTTGTGAGT
* * * *
73210224 TTAACTCAGCTAACTCAAAAAATTCAAGTTGTGAGCTTAACTCAACTAACCTTTAAGCATAAGCT
1 TTAACTCAGCTAACTCAAAAAATTCAGGTTGAGAGCTTAACTCAGCTAACCTTTAAACATAAGCT
* * * ** *
73210289 GGGAACATAGGTTCACGAGCTATTTCAGATTTCCAAGC
66 GGGAACGTAGGTTCGCGAGCTGTTTTGGACTTCCAAGC
* * * * * * ** * *
73210327 TTAACTCAACTAACTAAAAAAATTCAGGTTGCGAGTTTAACTTAGCTAACCTTTTAATGTTAGTT
1 TTAACTCAGCTAACTCAAAAAATTCAGGTTGAGAGCTTAACTCAGCTAACCTTTAAACATAAGCT
* *
73210392 GGGAACGTAGGTCCGCGAGCTGTTTTGGACTTGCAAGC
66 GGGAACGTAGGTTCGCGAGCTGTTTTGGACTTCCAAGC
* * *
73210430 TTGACTCAGCTAACTCAAAAATATTTAGGTTGAGAGCTTAACTCAGCTAACCTTTAAACATCAGC
1 TTAACTCAGCTAACTCAAAAA-ATTCAGGTTGAGAGCTTAACTCAGCTAACCTTTAAACATAAGC
* * * * * *
73210495 TAGTAATGTAAGTTCGCAAGCTGTCTTGGA
65 TGGGAACGTAGGTTCGCGAGCTGTTTTGGA
73210525 GTTGTGAGCA
Statistics
Matches: 157, Mismatches: 40, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
103 100 0.64
104 57 0.36
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30
Consensus pattern (103 bp):
TTAACTCAGCTAACTCAAAAAATTCAGGTTGAGAGCTTAACTCAGCTAACCTTTAAACATAAGCT
GGGAACGTAGGTTCGCGAGCTGTTTTGGACTTCCAAGC
Found at i:73210622 original size:40 final size:40
Alignment explanation
Indices: 73210562--73210665 Score: 109
Period size: 40 Copynumber: 2.6 Consensus size: 40
73210552 AAACATTAGT
* * * ***
73210562 TGGGAACGTAGGTCCGCGAGCTGTGTTGGAGTTTATCAGC
1 TGGGAACATAGGTCCACGAGCTATGCCAGAGTTTATCAGC
73210602 TGGGAACATAGGTCCACGAGCTATGCCAGAGTTTATCAGC
1 TGGGAACATAGGTCCACGAGCTATGCCAGAGTTTATCAGC
* * * * *
73210642 TAGGAGCGTAGGTTCGCGAGCTAT
1 TGGGAACATAGGTCCACGAGCTAT
73210666 CATGGAATTG
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (40 bp):
TGGGAACATAGGTCCACGAGCTATGCCAGAGTTTATCAGC
Found at i:73210950 original size:144 final size:143
Alignment explanation
Indices: 73210596--73210938 Score: 321
Period size: 143 Copynumber: 2.4 Consensus size: 143
73210586 GTTGGAGTTT
* * **** * * ** *
73210596 ATCAGCTGGGAACATAGGTCCACGAGCTATGCCAGAGTTTATCAGCTAGGAGCGTAGGT-TCGCG
1 ATCAGCTGGGAACGTAGGTTCACGAGCTATATTGGAGTTTATCAACTAGGAACAAACGTCT-GCG
* * * * ** * *
73210660 AGCTATCATGGAATTGCAAGCTTAACTCAACTAACTCAAGTAAATGGAGGTTGTGAGCATACTCA
65 AGCTGTCTTAGAGTTGCAAGCTTAACTCAACTAACTCAAGTAAATAAAAGTTGTGAACATACTCA
*
73210725 GCTAACCTTTAAAC
130 GATAACCTTTAAAC
* * * * * * ***
73210739 ATTAGTTGGGAACGTAGGTTCACGAGTTATGTTGGAGTTTATCAGCTGGGAATGTACGTCTGCGA
1 ATCAGCTGGGAACGTAGGTTCACGAGCTATATTGGAGTTTATCAACTAGGAACAAACGTCTGCGA
* * *
73210804 GCTGTCTTAGAGTTGCGAGCTTAACTCAGCTAACTCGAA-TAAATAAAATTTGTGAACATAACTC
66 GCTGTCTTAGAGTTGCAAGCTTAACTCAACTAACTC-AAGTAAATAAAAGTTGTGAACAT-ACTC
73210868 AGATAACCTTTAAAC
129 AGATAACCTTTAAAC
** * *
73210883 ATCAGCTGGGAACGTAGGTTTGCGAGCTATATTGGTGTTTATTAACTAGGAACAAA
1 ATCAGCTGGGAACGTAGGTTCACGAGCTATATTGGAGTTTATCAACTAGGAACAAA
73210939 GCTTCGTGAG
Statistics
Matches: 160, Mismatches: 37, Indels: 5
0.79 0.18 0.02
Matches are distributed among these distances:
143 96 0.60
144 64 0.40
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (143 bp):
ATCAGCTGGGAACGTAGGTTCACGAGCTATATTGGAGTTTATCAACTAGGAACAAACGTCTGCGA
GCTGTCTTAGAGTTGCAAGCTTAACTCAACTAACTCAAGTAAATAAAAGTTGTGAACATACTCAG
ATAACCTTTAAAC
Found at i:73214567 original size:281 final size:281
Alignment explanation
Indices: 73214025--73214583 Score: 621
Period size: 281 Copynumber: 2.0 Consensus size: 281
73214015 TTGAGTACAC
* * *
73214025 CTTATATTAACTATGTCTACAAAATAGAAGGCATGCACAATGTACGGATATCTAAATTCTCACCT
1 CTTATATTAACGATGTCTACAAAATAGAAGGCATGCACAATGTACGAATATCTAAATTCTCACCC
* *
73214090 ATCCCAGATGAGAGTATTGGGCTGCCAGTGTCCAGCGTCCAGTTCAAGTTAGCCCCGAATATGAA
66 ATCCCAGATGAAAGTATTGGGCTGCCAGTGTCCAGCGTCCAGTTCAAGTTAGCCCCGAACATGAA
* * * * *
73214155 CTTGCATCGTGTCCTGAAAGGTCATCCAACTTTCACTCAAATACACACCAAAATGGATGTTCAGG
131 CTTGCACCGCGTCCCGAAAGGTCAGCCAACTTTCACTCAAATACACACCAAAATGGATATTCAGG
* * * * *
73214220 AAAGAGACAATCAATAGAGGTTTTTCAAGTACTGTAGAAACCCAGAGCATACGAAGGCAACATGT
196 AAAGAGACAATCAACAAAGGTTTATCAAGTACTATAGAAACCCAGAGCATACAAAGGCAACATGT
*
73214285 TCCG-TATTGAGGGATACACGT
261 T-CGATATTAAGGGATACACGT
* * * *
73214306 CTTATATTAACGATG-CGTA-AAAACTAGAAGGCATGCACAATGTATGAATATCTGAATTGTGAC
1 CTTATATTAACGATGTC-TACAAAA-TAGAAGGCATGCACAATGTACGAATATCTAAATTCTCAC
* * * *
73214369 CCATCCCAGATGAAAGTA-TGTGGTTGCTAGTGTCCAGCGCTCCA-TTCGAGTTGGCCCCGAACA
64 CCATCCCAGATGAAAGTATTG-GGCTGCCAGTGTCCAGCG-TCCAGTTCAAGTTAGCCCCGAACA
** * *** ** * *
73214432 TGAACTTGTGCCGCGTCCCGAAAGGTC-GCCTGACTTTCACTTGGATACGTACTAATATGGATAT
127 TGAACTTGCACCGCGTCCCGAAAGGTCAGCC-AACTTTCACTCAAATACACACCAAAATGGATAT
* * * * * *
73214496 TC-GAGAGAGAGACAATCAACAAAGG-TTATGAGGGTACTATAGAAATCCAGGGTATACAAAGGC
191 TCAG-GAAAGAGACAATCAACAAAGGTTTATCA-AGTACTATAGAAACCCAGAGCATACAAAGGC
*
73214559 ATCATGTTCGATATTAAGGGATACA
254 AACATGTTCGATATTAAGGGATACA
73214584 TTGAGGCCTC
Statistics
Matches: 229, Mismatches: 41, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
280 16 0.07
281 209 0.91
282 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (281 bp):
CTTATATTAACGATGTCTACAAAATAGAAGGCATGCACAATGTACGAATATCTAAATTCTCACCC
ATCCCAGATGAAAGTATTGGGCTGCCAGTGTCCAGCGTCCAGTTCAAGTTAGCCCCGAACATGAA
CTTGCACCGCGTCCCGAAAGGTCAGCCAACTTTCACTCAAATACACACCAAAATGGATATTCAGG
AAAGAGACAATCAACAAAGGTTTATCAAGTACTATAGAAACCCAGAGCATACAAAGGCAACATGT
TCGATATTAAGGGATACACGT
Found at i:73215194 original size:24 final size:24
Alignment explanation
Indices: 73215167--73215229 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
73215157 ACCCTCGTAC
*
73215167 TCATCTTCATCTCCA-CATTGGTCT
1 TCATCTTCATCTCCACCATCGG-CT
*
73215191 TCATATTCAGT-TCCACCATCGGCT
1 TCATCTTCA-TCTCCACCATCGGCT
*
73215215 TCATCTTCGTCTCCA
1 TCATCTTCATCTCCA
73215230 TCGCTTTCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
23 1 0.03
24 25 0.78
25 6 0.19
ACGTcount: A:0.17, C:0.35, G:0.10, T:0.38
Consensus pattern (24 bp):
TCATCTTCATCTCCACCATCGGCT
Found at i:73216863 original size:25 final size:24
Alignment explanation
Indices: 73216834--73216881 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
73216824 GCACTACCGC
*
73216834 AGCTCTGTGTGAGCGTCCTGATATA
1 AGCTCT-TATGAGCGTCCTGATATA
* *
73216859 AGCTCTTATGGGCTTCCTGATAT
1 AGCTCTTATGAGCGTCCTGATAT
73216882 GGCTTGCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.35
Consensus pattern (24 bp):
AGCTCTTATGAGCGTCCTGATATA
Found at i:73239480 original size:19 final size:18
Alignment explanation
Indices: 73239467--73239511 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73239457 GTGGCGCACG
*
73239467 AAGCGCATCTTGGCACAC
1 AAGCGCATCCTGGCACAC
**
73239485 AAATTGCATCCTGGCACAC
1 -AAGCGCATCCTGGCACAC
73239504 AAGCGCAT
1 AAGCGCAT
73239512 AAACCTGTAC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (18 bp):
AAGCGCATCCTGGCACAC
Found at i:73240022 original size:6 final size:6
Alignment explanation
Indices: 73240011--73240035 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
73240001 AATTTCCATC
73240011 AATTCA AATTCA AATTCA AATTCA A
1 AATTCA AATTCA AATTCA AATTCA A
73240036 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
AATTCA
Found at i:73248826 original size:67 final size:67
Alignment explanation
Indices: 73248718--73248853 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
73248708 TTTGGGCCTA
*
73248718 GTCGGAACAGTGGTTTTGGGACCACTATTTCGAGGCCAGAGAAAATTATTTTAGTATTATTTTAT
1 GTCGGAACAGTGGTTTCGGGACCACTATTTCGAGGCCAGAGAAAATTATTTTAGTATTATTTTAT
73248783 GT
66 GT
*
73248785 GTCGGAACAGTGGTTTCGGGACCACTATTTTGAGGCCAGAGAAAATTATTTTAGTATTATTTTAT
1 GTCGGAACAGTGGTTTCGGGACCACTATTTCGAGGCCAGAGAAAATTATTTTAGTATTATTTTAT
73248850 GT
66 GT
73248852 GT
1 GT
73248854 TATAATATAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (67 bp):
GTCGGAACAGTGGTTTCGGGACCACTATTTCGAGGCCAGAGAAAATTATTTTAGTATTATTTTAT
GT
Found at i:73257341 original size:24 final size:24
Alignment explanation
Indices: 73257314--73257375 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
73257304 TGGCTTTACG
*
73257314 GAGCTACCCGTTATTGGCTCGTAT
1 GAGCTTCCCGTTATTGGCTCGTAT
* *
73257338 GAGCTTCCTGATTA-TGGCTCTTAT
1 GAGCTTCCCG-TTATTGGCTCGTAT
73257362 GAGCTTCCCGTTAT
1 GAGCTTCCCGTTAT
73257376 ACAACTCGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 3 0.09
24 26 0.81
25 3 0.09
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (24 bp):
GAGCTTCCCGTTATTGGCTCGTAT
Found at i:73260399 original size:15 final size:15
Alignment explanation
Indices: 73260379--73260409 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73260369 GAATTCGGCA
73260379 TTGTAAGTGATGCCT
1 TTGTAAGTGATGCCT
73260394 TTGTAAGTGATGCCT
1 TTGTAAGTGATGCCT
73260409 T
1 T
73260410 GGGCTCTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (15 bp):
TTGTAAGTGATGCCT
Found at i:73261035 original size:40 final size:40
Alignment explanation
Indices: 73260976--73261156 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
73260966 CATTTGAATG
*
73260976 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
73261016 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
73261056 ATATCCGGGCTAAGACCCGAAGGCATTTGTGAGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
73261096 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
73261136 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
73261157 AAACTTGGGT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 114 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:73262629 original size:30 final size:30
Alignment explanation
Indices: 73262593--73262720 Score: 118
Period size: 30 Copynumber: 4.3 Consensus size: 30
73262583 GGCTATCAAT
73262593 TATGAAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGATGGTGACGACCATCGAAC
* * * *
73262623 TATGAAAAGGAATGGCT-TC-AGCTAT-GAAAT
1 TATGAAAAGGGATGG-TGACGA-CCATCG-AAC
*
73262653 TATGAAAAGGGATGGTGACGACCATTGAAC
1 TATGAAAAGGGATGGTGACGACCATCGAAC
* * * * *
73262683 AATGAAAAGGGTTGGTGACGACGATCAAAT
1 TATGAAAAGGGATGGTGACGACCATCGAAC
73262713 TATGAAAA
1 TATGAAAA
73262721 AAGATAGCTT
Statistics
Matches: 77, Mismatches: 15, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
29 3 0.04
30 71 0.92
31 3 0.04
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.21
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCGAAC
Found at i:73262713 original size:60 final size:60
Alignment explanation
Indices: 73262590--73262720 Score: 167
Period size: 60 Copynumber: 2.2 Consensus size: 60
73262580 TTTGGCTATC
* * * *
73262590 AATTATGAAAAGGGATGGTGACGACCATCGAACTATGAAAAGGAATGGCTTCAGCTATGA
1 AATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGAATGGCTACAGCGATCA
* **
73262650 AATTATGAAAAGGGATGGTGACGACCATTGAACAATGAAAAGGGTTGG-TGAC-GACGATCA
1 AATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGAATGGCT-ACAG-CGATCA
73262710 AATTATGAAAA
1 AATTATGAAAA
73262721 AAGATAGCTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
59 2 0.03
60 60 0.97
ACGTcount: A:0.40, C:0.11, G:0.27, T:0.21
Consensus pattern (60 bp):
AATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGAATGGCTACAGCGATCA
Found at i:73262769 original size:30 final size:30
Alignment explanation
Indices: 73262701--73262782 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
73262691 GGGTTGGTGA
* * * * *
73262701 CGACGATCAAATTATGAAAAAAGATAGCTT
1 CGACTATCGAATTATGAAAAAGGATAACCT
*
73262731 CGATTATCGAATTATGAAAAAGGATAACCT
1 CGACTATCGAATTATGAAAAAGGATAACCT
* * *
73262761 CGGCTATCGAATAAAGAAAAAG
1 CGACTATCGAATTATGAAAAAG
73262783 AGATGTGTCA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.22
Consensus pattern (30 bp):
CGACTATCGAATTATGAAAAAGGATAACCT
Found at i:73263851 original size:12 final size:12
Alignment explanation
Indices: 73263831--73263860 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
73263821 GTCAGGTTGT
*
73263831 CACACGACCTAG
1 CACATGACCTAG
73263843 CACATGACCTAG
1 CACATGACCTAG
73263855 CACATG
1 CACATG
73263861 GTTGTGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.37, G:0.17, T:0.13
Consensus pattern (12 bp):
CACATGACCTAG
Found at i:73266500 original size:40 final size:40
Alignment explanation
Indices: 73266445--73266570 Score: 207
Period size: 40 Copynumber: 3.1 Consensus size: 40
73266435 CACACCAGTT
* *
73266445 TGTGGACAAGCCACCAGTAATGCAGATAAGCTGCCAAAAA
1 TGTGGATAAGCCACCAGTAATGCAGACAAGCTGCCAAAAA
73266485 TGTGGATAAGCCACCAGTAATGCAGACAAGCTGCCAAAAA
1 TGTGGATAAGCCACCAGTAATGCAGACAAGCTGCCAAAAA
* * *
73266525 TGTGGATAAGCCATCAGTAATGAAGACAAGCTGCCAATAA
1 TGTGGATAAGCCACCAGTAATGCAGACAAGCTGCCAAAAA
73266565 TGTGGA
1 TGTGGA
73266571 GAAGAGACTA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (40 bp):
TGTGGATAAGCCACCAGTAATGCAGACAAGCTGCCAAAAA
Found at i:73266535 original size:20 final size:20
Alignment explanation
Indices: 73266469--73266535 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
73266459 CAGTAATGCA
73266469 GATAAGCTGCCAAAAATGTG
1 GATAAGCTGCCAAAAATGTG
** ** **
73266489 GATAAGCCACCAGTAATGCA
1 GATAAGCTGCCAAAAATGTG
*
73266509 GACAAGCTGCCAAAAATGTG
1 GATAAGCTGCCAAAAATGTG
73266529 GATAAGC
1 GATAAGC
73266536 CATCAGTAAT
Statistics
Matches: 33, Mismatches: 14, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.16
Consensus pattern (20 bp):
GATAAGCTGCCAAAAATGTG
Found at i:73266599 original size:80 final size:80
Alignment explanation
Indices: 73266445--73266623 Score: 196
Period size: 80 Copynumber: 2.2 Consensus size: 80
73266435 CACACCAGTT
* * * * *
73266445 TGTGGACAAGCCACCAGTAATGCAGATAAGCTGCCAAAAATGTGGATAAGCCACCAGTAATGCAG
1 TGTGGACAAGCCACCAGTAATGAAGACAAGCTGCCAAAAATGTGGAGAAGACACCAGTAATGCAA
*
73266510 ACAAGCTGCCAAAAA
66 ACAAACTGCCAAAAA
* * * * * *
73266525 TGTGGATAAGCCATCAGTAATGAAGACAAGCTGCCAATAATGTGGAGAAGAGACTAGTAGTGCAA
1 TGTGGACAAGCCACCAGTAATGAAGACAAGCTGCCAAAAATGTGGAGAAGACACCAGTAATGCAA
* **
73266590 ATAAACTGCCAGTAA
66 ACAAACTGCCAAAAA
* * *
73266605 TGTAGAAAAGCTACCAGTA
1 TGTGGACAAGCCACCAGTA
73266624 TTATGGACAA
Statistics
Matches: 80, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.18
Consensus pattern (80 bp):
TGTGGACAAGCCACCAGTAATGAAGACAAGCTGCCAAAAATGTGGAGAAGACACCAGTAATGCAA
ACAAACTGCCAAAAA
Found at i:73266805 original size:38 final size:38
Alignment explanation
Indices: 73266738--73266810 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
73266728 GTACAGTAAG
* *
73266738 CATGATTAAAACATGCAATTAGTAGTAGAATTAGTAGA
1 CATGATTAAAACATGCAATAAGTAGTAGAAATAGTAGA
* *
73266776 CATGATTTAAACATGCGATAAGT-GATAGAAATAGT
1 CATGATTAAAACATGCAATAAGTAG-TAGAAATAGT
73266811 GGCATGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 1 0.03
38 29 0.97
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (38 bp):
CATGATTAAAACATGCAATAAGTAGTAGAAATAGTAGA
Found at i:73268762 original size:40 final size:40
Alignment explanation
Indices: 73268682--73268858 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 40
73268672 AACCAAGTAA
** *
73268682 CTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGC
* *
73268721 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
** * *
73268761 CTTTAGGACTTAGCCCGAAAATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * *
73268801 CTTCGAGACTTAGCCCGGAAATAGTAACTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
73268841 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
73268859 TTATCATCCG
Statistics
Matches: 119, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 12 0.10
40 107 0.90
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:73268840 original size:80 final size:80
Alignment explanation
Indices: 73268707--73268857 Score: 248
Period size: 80 Copynumber: 1.9 Consensus size: 80
73268697 GGATATAGCT
* * ** *
73268707 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTTAGGACTT
1 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGAAATAGTAACTCGCACAATTGCCTTCAGGACTT
73268772 AGCCCGAAAATAGTA
66 AGCCCGAAAATAGTA
*
73268787 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGAAATAGTAACTCGCACAATTGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGAAATAGTAACTCGCACAATTGCCTTCAGGACTT
73268852 AGCCCG
66 AGCCCG
73268858 GTTATCATCC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 65 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGAGACTTAGCCCGGAAATAGTAACTCGCACAATTGCCTTCAGGACTT
AGCCCGAAAATAGTA
Found at i:73274224 original size:40 final size:40
Alignment explanation
Indices: 73274137--73274348 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
73274127 CCTTCGGAAT
* * *
73274137 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
73274176 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
73274216 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
73274256 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
73274296 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
73274336 TTAGCCCGGATAT
1 TTAACCCGGATAT
73274349 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:73274262 original size:80 final size:80
Alignment explanation
Indices: 73274137--73274348 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
73274127 CCTTCGGAAT
* * * ** * ***
73274137 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
73274201 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
73274216 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
73274281 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
73274296 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
73274349 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:73280105 original size:40 final size:40
Alignment explanation
Indices: 73280036--73280251 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
73280026 TTGGGATTTA
* * *
73280036 CCTTCGGG-TTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAG-TAACTCGCACAAATG
** *
73280074 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
**
73280114 CCTTTAGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
73280154 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
73280194 -CTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
73280233 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73280252 TTATCATTCG
Statistics
Matches: 162, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 8 0.05
39 43 0.27
40 111 0.69
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:73280240 original size:79 final size:80
Alignment explanation
Indices: 73280036--73280251 Score: 314
Period size: 79 Copynumber: 2.7 Consensus size: 80
73280026 TTGGGATTTA
* * * **
73280036 CCTTCGGG-TTTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGAAATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATA
*
73280098 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
**
73280114 CCTTTAGGACTTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAG
73280179 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
73280194 -CTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
73280252 TTATCATTCG
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
78 6 0.05
79 60 0.48
80 58 0.47
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAG
TAACTCGCACAAATG
Found at i:73284002 original size:16 final size:16
Alignment explanation
Indices: 73283978--73284011 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
73283968 AATTTACCAT
*
73283978 TTGGAGAACTTTAAGG
1 TTGGAGAACTCTAAGG
*
73283994 TTGGCGAACTCTAAGG
1 TTGGAGAACTCTAAGG
73284010 TT
1 TT
73284012 TGACAGACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.32
Consensus pattern (16 bp):
TTGGAGAACTCTAAGG
Found at i:73286995 original size:43 final size:43
Alignment explanation
Indices: 73286934--73287133 Score: 256
Period size: 43 Copynumber: 4.7 Consensus size: 43
73286924 TTAGTGGCGT
* *
73286934 TAAAGAACGTGACCTTTAGCAGCGCTTTTCACATAAACGCCGC
1 TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACGCCGC
* * * *
73286977 TAAAGAACATGACCTTTAGCAGTGCTTTTCACACAAATGCCGC
1 TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACGCCGC
* * *
73287020 TAAAGAACGTGACCTTTAACGGCGCTTTTCACACAAACACTGC
1 TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACGCCGC
* * * * * * *
73287063 TAAAGAACATGACTTTTAGTGGCGCTTCTCTCAAAAATGCCGC
1 TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACGCCGC
73287106 TAAAGAACGTGACCTTTAGCGGCGCTTT
1 TAAAGAACGTGACCTTTAGCGGCGCTTT
73287134 CTTACAAACA
Statistics
Matches: 132, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 132 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACGCCGC
Found at i:73287081 original size:86 final size:86
Alignment explanation
Indices: 73286934--73287150 Score: 292
Period size: 86 Copynumber: 2.5 Consensus size: 86
73286924 TTAGTGGCGT
* * *
73286934 TAAAGAACGTGACCTTTAGCAGCGCTTTTCACATAAACGCCGCTAAAGAACATGACCTTTAGCAG
1 TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACACCGCTAAAGAACATGACCTTTAGCAG
* * *
73286999 TGCTTTTCACACAAATGCCGC
66 CGCTTCTCACAAAAATGCCGC
* * * **
73287020 TAAAGAACGTGACCTTTAACGGCGCTTTTCACACAAACACTGCTAAAGAACATGACTTTTAGTGG
1 TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACACCGCTAAAGAACATGACCTTTAGCAG
*
73287085 CGCTTCTCTCAAAAATGCCGC
66 CGCTTCTCACAAAAATGCCGC
** *
73287106 TAAAGAACGTGACCTTTAGCGGCGC-TTTCTTACAAACACCACTAA
1 TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACACCGCTAA
73287151 TTTTAGCATA
Statistics
Matches: 114, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 16 0.14
86 98 0.86
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (86 bp):
TAAAGAACGTGACCTTTAGCGGCGCTTTTCACACAAACACCGCTAAAGAACATGACCTTTAGCAG
CGCTTCTCACAAAAATGCCGC
Found at i:73287861 original size:14 final size:14
Alignment explanation
Indices: 73287842--73287884 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
73287832 ACTAACAATG
73287842 AATTAAACCATTAT
1 AATTAAACCATTAT
*
73287856 AATTAAACTATTAT
1 AATTAAACCATTAT
*
73287870 GATTAAA-CATTAT
1 AATTAAACCATTAT
73287883 AA
1 AA
73287885 ATATTTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
13 6 0.24
14 19 0.76
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.37
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:73292678 original size:72 final size:72
Alignment explanation
Indices: 73292561--73292709 Score: 271
Period size: 72 Copynumber: 2.1 Consensus size: 72
73292551 ATGGTAAGCA
73292561 TTATAAGGATAAACCAGATTAATCATTGAAGAGGTTCTACTAGGTGTACACTCTCCATGGAAAAT
1 TTATAAGGATAAACCAGATTAATCATTGAAGAGGTTCTACTAGGTGTACACTCTCCATGGAAAAT
73292626 CCATTTT
66 CCATTTT
* * *
73292633 TTATAAGGATAAACCAGATTAATCATTGAAGAGGTTGTATTAGGTGTACACTTTCCATGGAAAAT
1 TTATAAGGATAAACCAGATTAATCATTGAAGAGGTTCTACTAGGTGTACACTCTCCATGGAAAAT
73292698 CCATTTT
66 CCATTTT
73292705 TTATA
1 TTATA
73292710 CCCCTGAATA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (72 bp):
TTATAAGGATAAACCAGATTAATCATTGAAGAGGTTCTACTAGGTGTACACTCTCCATGGAAAAT
CCATTTT
Found at i:73292989 original size:9 final size:9
Alignment explanation
Indices: 73292975--73293175 Score: 233
Period size: 9 Copynumber: 21.9 Consensus size: 9
73292965 TAAGTATAAT
73292975 TAAGTTATG
1 TAAGTTATG
73292984 TAAGTTATG
1 TAAGTTATG
73292993 TAAGTTATG
1 TAAGTTATG
*
73293002 TGAGTTATG
1 TAAGTTATG
*
73293011 TGAGTTATG
1 TAAGTTATG
* *
73293020 TGAGGTATG
1 TAAGTTATG
*
73293029 TAAGTTGTG
1 TAAGTTATG
73293038 TAAGTTATG
1 TAAGTTATG
*
73293047 TGAGTTATG
1 TAAGTTATG
73293056 TAAGTTATG
1 TAAGTTATG
*
73293065 TAAGGTATG
1 TAAGTTATG
73293074 TAAGTTATG
1 TAAGTTATG
73293083 TAAGTTATG
1 TAAGTTATG
73293092 TAAGTTATG
1 TAAGTTATG
73293101 TAAGTTATG
1 TAAGTTATG
* *
73293110 ATATGATATATATA
1 -TA--A-GT-TATG
73293124 TAAGTTAT-
1 TAAGTTATG
*
73293132 TAAGTCATG
1 TAAGTTATG
73293141 TAAGTTATG
1 TAAGTTATG
*
73293150 TAAGTTCTG
1 TAAGTTATG
*
73293159 TGAGTTATG
1 TAAGTTATG
*
73293168 TGAGTTAT
1 TAAGTTAT
73293176 TTGAATCAAC
Statistics
Matches: 168, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
8 7 0.04
9 150 0.89
10 3 0.02
11 1 0.01
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.31, C:0.01, G:0.25, T:0.43
Consensus pattern (9 bp):
TAAGTTATG
Found at i:73294185 original size:20 final size:20
Alignment explanation
Indices: 73294162--73294212 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
73294152 TTTCAACTTT
*
73294162 GATTTGGGGAAAAATTTAGG
1 GATTTGGGGAAAAAGTTAGG
*
73294182 GATTAGGGG-AAAAGTTAGG
1 GATTTGGGGAAAAAGTTAGG
73294201 GATTTGGGGAAA
1 GATTTGGGGAAA
73294213 TTTTGTTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.35, C:0.00, G:0.39, T:0.25
Consensus pattern (20 bp):
GATTTGGGGAAAAAGTTAGG
Found at i:73294700 original size:148 final size:148
Alignment explanation
Indices: 73294424--73294714 Score: 354
Period size: 148 Copynumber: 2.0 Consensus size: 148
73294414 GCATAGTCTA
* * *
73294424 TTGCAGTGTTTTGTACAAAACGCCACTAATAACAAGGCTAAAACGACGACGTTTTCTGAAATCTT
1 TTGCAGTGTTTTGGACAAAACGCCACTAATAACAAGGCTAAAACGACGACGTTTTCAGAAATCCT
* * * * *
73294489 AATACATACTTGTGGCATTTTATGTAAGCGCCACTAAATACAAAGCATAAAACGGCGCAATTTTG
66 AATACATACTTGCGGCATTTTACGTAAGCGCCACTAAAAACAAAACATAAAACGACGCAATTTTG
*
73294554 GAAACACTTAACATATAT
131 CAAACACTTAACATATAT
* * * * * * *
73294572 TTGCGGTGTTTTGGGCAAAATGCCACTAATAACAAGGCT-AAACGATGTCGTTTTGAGAACTCCT
1 TTGCAGTGTTTTGGACAAAACGCCACTAATAACAAGGCTAAAACGACGACGTTTTCAGAAATCCT
* * *
73294636 AATACATATTTGCGGTATTTTTAACG-AAGCGCCACTAAAAACAAAACATAAAATGACGTC-ATT
66 AATACATACTTGCGGCA-TTTT-ACGTAAGCGCCACTAAAAACAAAACATAAAACGACG-CAATT
*
73294699 TTGCTAACACTTAACA
128 TTGCAAACACTTAACA
73294715 CATGTTTGTG
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
147 33 0.28
148 84 0.70
149 3 0.03
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (148 bp):
TTGCAGTGTTTTGGACAAAACGCCACTAATAACAAGGCTAAAACGACGACGTTTTCAGAAATCCT
AATACATACTTGCGGCATTTTACGTAAGCGCCACTAAAAACAAAACATAAAACGACGCAATTTTG
CAAACACTTAACATATAT
Found at i:73295282 original size:15 final size:14
Alignment explanation
Indices: 73295262--73295351 Score: 74
Period size: 15 Copynumber: 6.1 Consensus size: 14
73295252 ATTTATTATC
73295262 AGGGTTTAGAGTTTT
1 AGGGTTTA-AGTTTT
* *
73295277 AGGGTTTATGGTTT
1 AGGGTTTAAGTTTT
*
73295291 AGGGTTTAAAGGTTTA
1 AGGGTTT-AA-GTTTT
*
73295307 AGGATTT-AGTTTCT
1 AGGGTTTAAGTTT-T
*
73295321 AGAGTTTAAGGTTTT
1 AGGGTTTAA-GTTTT
73295336 AGGGTTTAAGGTTTT
1 AGGGTTTAA-GTTTT
73295351 A
1 A
73295352 TAGTTCATGG
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
13 4 0.07
14 17 0.28
15 26 0.43
16 13 0.22
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (14 bp):
AGGGTTTAAGTTTT
Found at i:73295284 original size:7 final size:7
Alignment explanation
Indices: 73295262--73295428 Score: 70
Period size: 7 Copynumber: 23.1 Consensus size: 7
73295252 ATTTATTATC
73295262 AGGGTTT
1 AGGGTTT
*
73295269 AGAGTTTT
1 AG-GGTTT
73295277 AGGGTTT
1 AGGGTTT
*
73295284 ATGGTTT
1 AGGGTTT
73295291 AGGGTTT
1 AGGGTTT
*
73295298 AAAGGTTT
1 -AGGGTTT
*
73295306 AAGGATTT
1 -AGGGTTT
*
73295314 A-GTTTCT
1 AGGGTT-T
*
73295321 AGAGTTT
1 AGGGTTT
*
73295328 AAGGTTTT
1 -AGGGTTT
73295336 AGGGTTT
1 AGGGTTT
*
73295343 AAGGTTTT
1 -AGGGTTT
** *
73295351 ATAGTTC
1 AGGGTTT
73295358 ATGGG-TT
1 A-GGGTTT
*
73295365 AGGATTT
1 AGGGTTT
73295372 AGGGGTTT
1 A-GGGTTT
*
73295380 -GGCTTT
1 AGGGTTT
**
73295386 AGATTTT
1 AGGGTTT
*
73295393 AAGGTTT
1 AGGGTTT
*
73295400 AGGGATT
1 AGGGTTT
*
73295407 AGGCTTT
1 AGGGTTT
*
73295414 AGAGTTT
1 AGGGTTT
73295421 AGGGTTT
1 AGGGTTT
73295428 A
1 A
73295429 AGGGCTAAAA
Statistics
Matches: 114, Mismatches: 36, Indels: 20
0.67 0.21 0.12
Matches are distributed among these distances:
6 10 0.09
7 67 0.59
8 37 0.32
ACGTcount: A:0.22, C:0.02, G:0.31, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:73295401 original size:28 final size:28
Alignment explanation
Indices: 73295369--73295428 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
73295359 TGGGTTAGGA
* * *
73295369 TTTAGGGGTTTGGCTTTAGATTTTAAGG
1 TTTAGGGATTAGGCTTTAGAGTTTAAGG
*
73295397 TTTAGGGATTAGGCTTTAGAGTTTAGGG
1 TTTAGGGATTAGGCTTTAGAGTTTAAGG
73295425 TTTA
1 TTTA
73295429 AGGGCTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.20, C:0.03, G:0.32, T:0.45
Consensus pattern (28 bp):
TTTAGGGATTAGGCTTTAGAGTTTAAGG
Found at i:73296613 original size:40 final size:40
Alignment explanation
Indices: 73296527--73296614 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 40
73296517 TTTTTTTGCA
* *
73296527 GCGTTTATCAAAAAGCATCGCTAATACTCAATCTATAGCG
1 GCGTTTTTCAAAAAGCATCGCTAATACTCAATATATAGCG
* * * * * * *
73296567 GTGTTTTTCAGAAAGCGTCGTTAATGCTCGATATATGGCG
1 GCGTTTTTCAAAAAGCATCGCTAATACTCAATATATAGCG
73296607 GCGTTTTT
1 GCGTTTTT
73296615 TAACCAAACG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (40 bp):
GCGTTTTTCAAAAAGCATCGCTAATACTCAATATATAGCG
Found at i:73296614 original size:155 final size:150
Alignment explanation
Indices: 73296260--73296602 Score: 332
Period size: 155 Copynumber: 2.3 Consensus size: 150
73296250 TAATTTTTTA
* * * * ** *
73296260 CGGCATTTTTCAAAAAGGGCCGCTAATGGTTGACCTATAG-TAGCATTTTTAAAAAGCGCCGCTA
1 CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATATATAGCGA-CATTTTTAAAAAGCGCCGCTA
* * *
73296324 ATGCCACTAAAACTCAACAGAAAAGCGTTGTGCTTAATTTTTTTTGCGGCATTTTTCAAAAAGCA
65 ATGCCACTAAAACTCAACAGAAAAGCGCTGTGCTTAATTTTTTTTGCAGCATTTATCAAAAAGCA
** *
73296389 CAGCTAATGGTCGACCTATAG
130 CAGCTAATACTCAACCTATAG
* * * * * * * * *
73296410 TGGCGTTTTTTAAAAAGTGCCGCTAGTGTTTGATCTATAGCGACATTTTTCAAAAAGTGCCTCTA
1 CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATATATAGCGACATTTTT-AAAAAGCGCCGCTA
* *
73296475 ATGCCACTAAAACTCAACATAAAACGACGGCACTGTGCTTAA-TTTTTTTGCAGCGTTTATCAAA
65 ATGCCACTAAAACTCAACAGAAAA-G-C-G--CTGTGCTTAATTTTTTTTGCAGCATTTATCAAA
*
73296539 AAGCATC-GCTAATACTCAATCTATAG
125 AAGCA-CAGCTAATACTCAACCTATAG
* * * *
73296565 CGGTGTTTTTCAGAAAGCGTCGTTAATGCTCGATATAT
1 CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATATAT
73296603 GGCGGCGTTT
Statistics
Matches: 155, Mismatches: 30, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
150 40 0.26
151 36 0.23
152 1 0.01
153 1 0.01
154 1 0.01
155 66 0.43
156 10 0.06
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (150 bp):
CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATATATAGCGACATTTTTAAAAAGCGCCGCTAA
TGCCACTAAAACTCAACAGAAAAGCGCTGTGCTTAATTTTTTTTGCAGCATTTATCAAAAAGCAC
AGCTAATACTCAACCTATAG
Found at i:73297545 original size:68 final size:67
Alignment explanation
Indices: 73297332--73297550 Score: 192
Period size: 68 Copynumber: 3.2 Consensus size: 67
73297322 GATGCCACAA
* ** * * * *
73297332 CCTAGCTATGGTTTTACATGGTATGAACCCATGTTTAATGTCCT-AGTGAACTCCTTATGTTGCC
1 CCTAGCTATGGTCTTACATAATATAAACCCATGTTTAATGTCTTAAG-G-ACTCCATATATTGCC
*
73297396 AAAG
64 ATAG
* * * * * *
73297400 CCCAGTTATGGTCTTACACAATATAAACTCATGTTTAATGTTCTGGT-A-GACTCCATTTATTAC
1 CCTAGCTATGGTCTTACATAATATAAACCCATGTTTAATG-TCT--TAAGGACTCCATATATTGC
* *
73297463 CTTAA
63 CATAG
* *
73297468 CCTAACTATGGTCTTACATAATATAAACCCATGTTTAATGTCTTAACGGACTCCATATATTGTCA
1 CCTAGCTATGGTCTTACATAATATAAACCCATGTTTAATGTCTTAA-GGACTCCATATATTGCCA
73297533 TAG
65 TAG
*
73297536 CTTAGCTATGGTCTT
1 CCTAGCTATGGTCTT
73297551 CCACATTAAA
Statistics
Matches: 117, Mismatches: 28, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
65 1 0.01
66 1 0.01
67 3 0.03
68 107 0.91
69 3 0.03
71 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (67 bp):
CCTAGCTATGGTCTTACATAATATAAACCCATGTTTAATGTCTTAAGGACTCCATATATTGCCAT
AG
Found at i:73308495 original size:14 final size:14
Alignment explanation
Indices: 73308476--73308504 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
73308466 CTTTTTTAAG
73308476 TCCAAAAATACTTA
1 TCCAAAAATACTTA
73308490 TCCAAAAATACTTA
1 TCCAAAAATACTTA
73308504 T
1 T
73308505 TTTAGTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (14 bp):
TCCAAAAATACTTA
Found at i:73319647 original size:29 final size:29
Alignment explanation
Indices: 73319614--73319716 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
73319604 GTTGAGAGAT
*
73319614 TGGCACTGAGTGTGCAAGCTTGAAATGCA
1 TGGCACTAAGTGTGCAAGCTTGAAATGCA
*
73319643 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCAAGCTTGAAATGCA
* * * **
73319672 TGGCACTAAGCGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCAAGCTTGAAA-TGCA
73319701 TGGCACTAAGTGTGCA
1 TGGCACTAAGTGTGCA
73319717 CGGCTGATTA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
28 5 0.08
29 60 0.92
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAATGCA
Found at i:73324514 original size:48 final size:47
Alignment explanation
Indices: 73324434--73324649 Score: 199
Period size: 48 Copynumber: 4.5 Consensus size: 47
73324424 AAGTGCTCAC
* * *
73324434 ATCATGGCCCGAAGCCAACA-CAAT-ATATCTCGCACCCAAAGTGCTAAT
1 ATCATGGCTCGAAGCCAA-ATCAATGA-A-CTCGCACCCGAAGTGCCAAT
* * *
73324482 ATCATGGCTC-ATAGCCAAATCAATGAAGCTCGCACCTGAAGTGTCGAT
1 ATCATGGCTCGA-AGCCAAATCAATGAA-CTCGCACCCGAAGTGCCAAT
* * *
73324530 ATCATGGCTTGAAGCCAAATTAAAAT-AACTCGCACCTGAAGTGCCAAT
1 ATCATGGCTCGAAGCCAAA-T-CAATGAACTCGCACCCGAAGTGCCAAT
* * *
73324578 ATCATGGC-CTAAAGCCAAATCAAAGTAACTCGCACCCGAAGTTCCAAT
1 ATCATGGCTC-GAAGCCAAATCAATG-AACTCGCACCCGAAGTGCCAAT
*
73324626 ATCATGGCCCGAAGCCAAATCAAT
1 ATCATGGCTCGAAGCCAAATCAAT
73324650 ATATCCCCTA
Statistics
Matches: 139, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
46 2 0.01
47 3 0.02
48 125 0.90
49 6 0.04
50 3 0.02
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (47 bp):
ATCATGGCTCGAAGCCAAATCAATGAACTCGCACCCGAAGTGCCAAT
Found at i:73324594 original size:96 final size:96
Alignment explanation
Indices: 73324434--73324645 Score: 252
Period size: 96 Copynumber: 2.2 Consensus size: 96
73324424 AAGTGCTCAC
* * * * *
73324434 ATCATGGCCCGAAGCCAACA-CAATATATCTCGCACCCAAAGTGCTAATATCATGGCTCATAGCC
1 ATCATGGCCCGAAGCCAA-ATTAAAATAACTCGCACCCAAAGTGCCAATATCATGGCTCAAAGCC
* * *
73324498 AAATCAATG-AAGCTCGCACCTGAAGTGT-CGAT
65 AAATCAAAGTAA-CTCGCACCCGAAGT-TCCAAT
** **
73324530 ATCATGGCTTGAAGCCAAATTAAAATAACTCGCACCTGAAGTGCCAATATCATGGC-CTAAAGCC
1 ATCATGGCCCGAAGCCAAATTAAAATAACTCGCACCCAAAGTGCCAATATCATGGCTC-AAAGCC
73324594 AAATCAAAGTAACTCGCACCCGAAGTTCCAAT
65 AAATCAAAGTAACTCGCACCCGAAGTTCCAAT
73324626 ATCATGGCCCGAAGCCAAAT
1 ATCATGGCCCGAAGCCAAAT
73324646 CAATATATCC
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
95 3 0.03
96 93 0.95
97 2 0.02
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.20
Consensus pattern (96 bp):
ATCATGGCCCGAAGCCAAATTAAAATAACTCGCACCCAAAGTGCCAATATCATGGCTCAAAGCCA
AATCAAAGTAACTCGCACCCGAAGTTCCAAT
Found at i:73329295 original size:28 final size:28
Alignment explanation
Indices: 73329255--73329310 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
73329245 GAGGAATACA
73329255 CAAAAGATAGCGTGCTTCTCAATTGCTG
1 CAAAAGATAGCGTGCTTCTCAATTGCTG
73329283 CAAAAGATAGCGTGCTTCTCAATTGCTG
1 CAAAAGATAGCGTGCTTCTCAATTGCTG
73329311 TCACAGTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (28 bp):
CAAAAGATAGCGTGCTTCTCAATTGCTG
Found at i:73330071 original size:2 final size:2
Alignment explanation
Indices: 73330064--73330088 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73330054 GCATTTCTTT
73330064 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
73330089 GATCATACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73333960 original size:20 final size:22
Alignment explanation
Indices: 73333909--73333956 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
73333899 ATAAAAAATA
* *
73333909 AAAATTTATTTTTTTAATTTAT
1 AAAATTTATTTTTATAATATAT
73333931 GAAAATTTATTTTTATAATATAT
1 -AAAATTTATTTTTATAATATAT
73333954 AAA
1 AAA
73333957 TTATAGATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
AAAATTTATTTTTATAATATAT
Found at i:73334001 original size:15 final size:17
Alignment explanation
Indices: 73333983--73334026 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
73333973 ATAAAAAGGA
73333983 AAAATAA-AAAAATT-T
1 AAAATAATAAAAATTCT
73333998 AAAATAATAAAAATTCT
1 AAAATAATAAAAATTCT
73334015 -AAATATATAAAA
1 AAAATA-ATAAAA
73334027 TTATAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 7 0.27
16 12 0.46
17 7 0.27
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATAATAAAAATTCT
Found at i:73334001 original size:16 final size:18
Alignment explanation
Indices: 73333982--73334044 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 18
73333972 AATAAAAAGG
73333982 AAAAATAA-AAAAATT-T
1 AAAAATAATAAAAATTCT
73333998 -AAAATAATAAAAATTCT
1 AAAAATAATAAAAATTCT
* *
73334015 AAATAT-AT-AAAATTAT
1 AAAAATAATAAAAATTCT
*
73334031 AGAAAATAGTAAAA
1 A-AAAATAATAAAA
73334045 TATACATACA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
15 7 0.19
16 15 0.41
17 7 0.19
18 5 0.14
19 3 0.08
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (18 bp):
AAAAATAATAAAAATTCT
Found at i:73334047 original size:25 final size:24
Alignment explanation
Indices: 73333982--73334048 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 24
73333972 AATAAAAAGG
** *
73333982 AAAAATAAAAAAATTTAAAATAAT
1 AAAAATACTAAAATATAAAATAAT
* *
73334006 AAAAATTCTAAATATATAAAATTAT
1 AAAAATACTAAA-ATATAAAATAAT
*
73334031 AGAAAATAGTAAAATATA
1 A-AAAATACTAAAATATA
73334049 CATACATTCT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
24 9 0.26
25 16 0.47
26 9 0.26
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (24 bp):
AAAAATACTAAAATATAAAATAAT
Done.