Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 25 of 345
Found at i:8244118 original size:21 final size:20
Alignment explanation
Indices: 8244094--8244184 Score: 85
Period size: 21 Copynumber: 4.3 Consensus size: 20
8244084 TCTGCTGCCA
*
8244094 TCGCTACTGCATCTGCCTCCC
1 TCGCTGCTGCAT-TGCCTCCC
*
8244115 TCGCT-CATGCCTCTGCCTCCC
1 TCGCTGC-TGCAT-TGCCTCCC
*
8244136 TCGCTGTTGCAGTTGCCTCCC
1 TCGCTGCTGCA-TTGCCTCCC
*
8244157 TCGCTGCTGTCGTTGCCTCCC
1 TCGCTGCTG-CATTGCCTCCC
*
8244178 TCTCTGC
1 TCGCTGC
8244185 CACCTCCGCT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.02
21 57 0.95
22 2 0.03
ACGTcount: A:0.04, C:0.45, G:0.19, T:0.32
Consensus pattern (20 bp):
TCGCTGCTGCATTGCCTCCC
Found at i:8245936 original size:25 final size:25
Alignment explanation
Indices: 8245890--8245940 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
8245880 CCCTTATAAT
* *
8245890 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCTTTATACCCCTAG
8245915 GTGAAAATGA-CTATTATACCCCTAG
1 GTGAAAATGACCT-TTATACCCCTAG
8245940 G
1 G
8245941 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCCTAG
Found at i:8245999 original size:10 final size:10
Alignment explanation
Indices: 8245984--8246018 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
8245974 TTTGTACATA
8245984 ATATGCCATG
1 ATATGCCATG
8245994 ATATGCACATG
1 ATATGC-CATG
8246005 ATATGCCATG
1 ATATGCCATG
8246015 ATAT
1 ATAT
8246019 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:8246003 original size:21 final size:21
Alignment explanation
Indices: 8245979--8246018 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8245969 ACTGATTTGT
8245979 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
8246000 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
8246019 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:8246024 original size:21 final size:20
Alignment explanation
Indices: 8245978--8246030 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
8245968 TACTGATTTG
*
8245978 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
8245999 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
8246020 TACATATATGC
1 TACATATATGC
8246031 ATGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:8246363 original size:31 final size:31
Alignment explanation
Indices: 8246328--8246403 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
8246318 CATTTACAGT
*
8246328 AAAGGCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
8246359 AAAGGCTTCGGCCTAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
8246390 AAAGGCTTCGGCCC
1 AAAGGCTTCGGCCC
8246404 CGTATATACT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:8249299 original size:40 final size:40
Alignment explanation
Indices: 8249239--8249422 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
8249229 TATTCGAATG
*
8249239 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
8249279 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * **
8249319 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
8249359 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
8249399 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
8249423 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
40 121 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:8249372 original size:80 final size:80
Alignment explanation
Indices: 8249239--8249422 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
8249229 TATTCGAATG
* * **
8249239 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAG-TCCCGAAGGC
* *
8249303 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
8249319 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
*
8249384 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
8249399 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
8249423 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:8249727 original size:22 final size:22
Alignment explanation
Indices: 8249685--8249728 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8249675 AAAATGTGCA
* *
8249685 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
8249707 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
8249729 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:8256095 original size:9 final size:9
Alignment explanation
Indices: 8256081--8256245 Score: 90
Period size: 9 Copynumber: 17.9 Consensus size: 9
8256071 AGGGATTATC
8256081 TTATGTAAA
1 TTATGTAAA
8256090 TTATGTAAGA
1 TTATGTAA-A
8256100 -TATGATATATA
1 TTATG-TA-A-A
8256111 TTTATGT--A
1 -TTATGTAAA
**
8256119 TTATGTAGG
1 TTATGTAAA
8256128 TTATGTAAA
1 TTATGTAAA
*
8256137 TTATGTAAG
1 TTATGTAAA
* **
8256146 TTATTTATC
1 TTATGTAAA
8256155 TTATGTAAA
1 TTATGTAAA
8256164 TTATGTAAGA
1 TTATGTAA-A
*
8256174 -TATGATACGTCA
1 TTATG-TA---AA
8256186 TTATGT--A
1 TTATGTAAA
*
8256193 TTATGTAAG
1 TTATGTAAA
8256202 TTATGTAAA
1 TTATGTAAA
*
8256211 TTATGTAAG
1 TTATGTAAA
* **
8256220 TTATTTATC
1 TTATGTAAA
8256229 TTATGTAAA
1 TTATGTAAA
8256238 TTATGTAA
1 TTATGTAA
8256246 GATATGATAT
Statistics
Matches: 120, Mismatches: 21, Indels: 30
0.70 0.12 0.18
Matches are distributed among these distances:
7 13 0.11
8 1 0.01
9 87 0.73
10 6 0.05
11 2 0.02
12 3 0.03
13 8 0.07
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (9 bp):
TTATGTAAA
Found at i:8256141 original size:18 final size:18
Alignment explanation
Indices: 8256118--8256245 Score: 100
Period size: 18 Copynumber: 7.0 Consensus size: 18
8256108 ATATTTATGT
*
8256118 ATTATGTAGGTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
8256136 ATTATGTAAGTTATTTAT
1 ATTATGTAAGTTATGTAA
* *
8256154 CTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
*
8256172 GA-TATGATACGTCATTATGT--
1 -ATTATG-TAAG---TTATGTAA
8256192 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
8256210 ATTATGTAAGTTATTTAT
1 ATTATGTAAGTTATGTAA
* *
8256228 CTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
8256246 GATATGATAT
Statistics
Matches: 85, Mismatches: 17, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
16 6 0.07
18 63 0.74
19 6 0.07
20 4 0.05
22 6 0.07
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:8256197 original size:74 final size:74
Alignment explanation
Indices: 8256076--8256266 Score: 330
Period size: 74 Copynumber: 2.6 Consensus size: 74
8256066 ATAAAAGGGA
* *
8256076 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAGGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
8256141 GTAAGTTAT
66 GTAAGTTAT
*
8256150 TTATCTTATGTAAATTATGTAAGATATGATACGTCA-TTATGTATTATGTAAGTTATGTAAATTA
1 TTATCTTATGTAAATTATGTAAGATATGATACAT-ATTTATGTATTATGTAAGTTATGTAAATTA
8256214 TGTAAGTTAT
65 TGTAAGTTAT
*
8256224 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTA
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTA
8256267 CTGTGATTGT
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
73 1 0.01
74 108 0.98
75 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.48
Consensus pattern (74 bp):
TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
GTAAGTTAT
Found at i:8256520 original size:62 final size:60
Alignment explanation
Indices: 8256449--8256643 Score: 154
Period size: 62 Copynumber: 3.2 Consensus size: 60
8256439 TGATTAAAAG
*
8256449 AAAAGAAAATAAAACATTTAAAATAAAGTTTTAAATACAATTTAATTTAATTAGGTAATTTA
1 AAAATAAAATAAAA-ATTTAAAATAAA-TTTTAAATACAATTTAATTTAATTAGGTAATTTA
* ** * * * ** **
8256511 AAAATAAAATAAAAGTAGACAAA-ATATTTT---TCCTAA-TTAA---AATAAAATAAAATA
1 AAAATAAAATAAAAATTTA-AAATAAATTTTAAATAC-AATTTAATTTAATTAGGTAATTTA
8256565 AAATATTTAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTA
1 AAA-A--TAAAATAAAA-ATTTAAAAT-AAATTTTAAATACAATTTAATTTAATTAGGTAATTTA
8256630 AAAATAAAATAAAA
1 AAAATAAAATAAAA
8256644 GTAGACAAAA
Statistics
Matches: 97, Mismatches: 21, Indels: 30
0.66 0.14 0.20
Matches are distributed among these distances:
54 12 0.12
55 1 0.01
57 19 0.20
58 4 0.04
59 6 0.06
60 4 0.04
61 6 0.06
62 32 0.33
64 1 0.01
65 12 0.12
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (60 bp):
AAAATAAAATAAAAATTTAAAATAAATTTTAAATACAATTTAATTTAATTAGGTAATTTA
Found at i:8256578 original size:119 final size:118
Alignment explanation
Indices: 8256454--8256810 Score: 510
Period size: 119 Copynumber: 3.1 Consensus size: 118
8256444 AAAAGAAAAG
8256454 AAAATAAAACATTTAAAATAAAGTTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAA
1 AAAATAAAACATTTAAAATAAA-TTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAA
*
8256519 ATAAAAGTAGACAAAATATTTTTCCTAATTAAAATAAAATAAAATAAAATATTT
65 ATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAATAAAATAAAATATTT
*
8256573 AAAATAAAATATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAA
1 AAAATAAAACATTTAAAAT-AAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAA
8256638 ATAAAAGTAGACAAAATATTTTTCCTGA-T----TAAAATAAAAT-AAA-A--T
65 ATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAATAAAATAAAATATTT
*
8256683 AAAAT-----ATTTAAAATAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAATTAAAA
1 AAAATAAAACATTTAAAATAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAA
* * * * * *
8256743 TAAAAGTAGACAAAATATTTATCGTGATTAAATTAAAATAAAATAATATCTTC
66 TAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAATAAAATAAAATATTT
8256796 AAAATAAAAC-TTTAA
1 AAAATAAAACATTTAA
8256811 TTACAATTTA
Statistics
Matches: 215, Mismatches: 8, Indels: 32
0.84 0.03 0.13
Matches are distributed among these distances:
104 70 0.33
105 10 0.05
109 11 0.05
110 8 0.04
112 1 0.00
113 8 0.04
114 11 0.05
117 5 0.02
118 1 0.00
119 87 0.40
120 3 0.01
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.35
Consensus pattern (118 bp):
AAAATAAAACATTTAAAATAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAA
TAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAATAAAATAAAATATTT
Found at i:8256604 original size:12 final size:14
Alignment explanation
Indices: 8256558--8256602 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
8256548 TAAAATAAAA
8256558 TAAAATAAAATATT
1 TAAAATAAAATATT
8256572 TAAAATAAAATATT
1 TAAAATAAAATATT
8256586 TAAAATAAAAT-TT
1 TAAAATAAAATATT
8256599 TAAA
1 TAAA
8256603 TACAATTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 6 0.19
14 25 0.81
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAAATAAAATATT
Found at i:8256609 original size:12 final size:12
Alignment explanation
Indices: 8256560--8256610 Score: 57
Period size: 14 Copynumber: 3.9 Consensus size: 12
8256550 AAATAAAATA
8256560 AAATAAAATATTT
1 AAATAAAAT-TTT
8256573 AAAATAAAATATTT
1 -AAATAAAAT-TTT
8256587 AAAATAAAATTTT
1 -AAATAAAATTTT
*
8256600 AAATACAATTT
1 AAATAAAATTT
8256611 AATTTAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
12 10 0.28
13 3 0.08
14 23 0.64
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATAAAATTTT
Found at i:8256706 original size:104 final size:105
Alignment explanation
Indices: 8256389--8256829 Score: 607
Period size: 104 Copynumber: 4.1 Consensus size: 105
8256379 AATAATGAAT
* *
8256389 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGAC-AAATATTTTTCATGATTAAAAGAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
* * *
8256453 GAAAATAAAACATTTAAAATAAAGTTTTAAATACAATTTA
66 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
*
8256493 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTAATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCC----T--GAT----
8256558 TAAAATAAAATATTTAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
56 TAAAAT-AAA-A--TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
8256612 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
8256677 TAAAATAAAATATTTAAAAT-AAATTTTAAATACAATTTA
66 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
* * * *
8256716 ATTTAATTAGGTAATTTAAAATTAAAATAAAAGTAGACAAAATATTTATCGTGATTAAATTAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
* * * * *
8256781 TAAAATAATATCTTCAAAATAAAACTTTAATTACAATTTA
66 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
8256821 ATTTAATTA
1 ATTTAATTA
8256830 ATAAGGTTAA
Statistics
Matches: 305, Mismatches: 16, Indels: 31
0.87 0.05 0.09
Matches are distributed among these distances:
104 135 0.44
105 57 0.19
107 1 0.00
108 3 0.01
109 7 0.02
111 2 0.01
113 2 0.01
115 6 0.02
116 3 0.01
117 1 0.00
119 88 0.29
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.35
Consensus pattern (105 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
Found at i:8256782 original size:223 final size:223
Alignment explanation
Indices: 8256389--8256804 Score: 708
Period size: 223 Copynumber: 1.9 Consensus size: 223
8256379 AATAATGAAT
8256389 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAATATTTTTCATGATTAAAAGAAAAG
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAATATTTTTCATGATTAAAAGAAAAG
8256454 AAAATAAAACATTTAAAATAAAGTTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAA
66 AAAATAAAACATTTAAAATAAAGTTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAA
* *
8256519 ATAAAAGTAGACAAAATATTTTTCCTAATTAAAATAAAATAAAATAAAATATTTAAAATAAAATA
131 ATAAAAGTAGACAAAATATTTATCCTAATTAAAATAAAATAAAATAAAATATTCAAAATAAAATA
8256584 TTTAAAATAAAATTTTAAATACAATTTA
196 TTTAAAATAAAATTTTAAATACAATTTA
* *
8256612 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGAC-AAATATTTTTCATGATTAAAAGAAAA
* * *
8256677 TAAAATAAAATATTTAAAATAAA-TTTTAAATACAATTTAATTTAATTAGGTAATTTAAAATTAA
65 GAAAATAAAACATTTAAAATAAAGTTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAA
* * * * *
8256741 AATAAAAGTAGACAAAATATTTATCGTGATTAAATTAAAATAAAATAATATCTTCAAAATAAAA
130 AATAAAAGTAGACAAAATATTTATCCTAATTAAAATAAAATAAAATAAAATATTCAAAATAAAA
8256805 CTTTAATTAC
Statistics
Matches: 180, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
223 135 0.75
224 45 0.25
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (223 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAATATTTTTCATGATTAAAAGAAAAG
AAAATAAAACATTTAAAATAAAGTTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAA
ATAAAAGTAGACAAAATATTTATCCTAATTAAAATAAAATAAAATAAAATATTCAAAATAAAATA
TTTAAAATAAAATTTTAAATACAATTTA
Found at i:8259112 original size:2 final size:2
Alignment explanation
Indices: 8259107--8259147 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8259097 ACACGGATAA
8259107 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8259148 ACTCCTATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8261447 original size:16 final size:16
Alignment explanation
Indices: 8261426--8261479 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
8261416 AGAATTAGAT
8261426 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
8261442 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
8261452 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
8261468 AAAATTTGAAAT
1 AAAATTTGAAAT
8261480 TATTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:8261721 original size:22 final size:21
Alignment explanation
Indices: 8261699--8261753 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
8261689 CTAAGCTTTA
*
8261699 AACCCTAAACCATGTACCCTT
1 AACCCTAAACCATGGACCCTT
* *
8261720 AACCCTTAAGCCTTGGACCCTT
1 AACCC-TAAACCATGGACCCTT
8261742 AACTCCTAAACC
1 AAC-CCTAAACC
8261754 CTTAACCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 5 0.18
22 21 0.75
23 2 0.07
ACGTcount: A:0.31, C:0.38, G:0.07, T:0.24
Consensus pattern (21 bp):
AACCCTAAACCATGGACCCTT
Found at i:8261724 original size:7 final size:7
Alignment explanation
Indices: 8261714--8261779 Score: 69
Period size: 7 Copynumber: 9.1 Consensus size: 7
8261704 TAAACCATGT
8261714 ACCCTTA
1 ACCCTTA
8261721 ACCCTTA
1 ACCCTTA
* *
8261728 AGCCTTGG
1 ACCCTT-A
8261736 ACCCTTA
1 ACCCTTA
*
8261743 ACTCCTAA
1 AC-CCTTA
8261751 ACCCTTA
1 ACCCTTA
*
8261758 ACCTTTA
1 ACCCTTA
*
8261765 ACCTTTA
1 ACCCTTA
8261772 ACCCTTA
1 ACCCTTA
8261779 A
1 A
8261780 ATCATAAACC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
7 38 0.78
8 11 0.22
ACGTcount: A:0.29, C:0.36, G:0.05, T:0.30
Consensus pattern (7 bp):
ACCCTTA
Found at i:8261845 original size:15 final size:14
Alignment explanation
Indices: 8261825--8261858 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
8261815 AACCATAAAT
*
8261825 CATAATCCCTAAGTC
1 CATAATCCATAA-TC
8261840 CATAATCCATAATC
1 CATAATCCATAATC
8261854 CATAA
1 CATAA
8261859 ACCTTGAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (14 bp):
CATAATCCATAATC
Found at i:8261848 original size:7 final size:7
Alignment explanation
Indices: 8261825--8261858 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
8261815 AACCATAAAT
8261825 CATAATC
1 CATAATC
*
8261832 CCTAAGTC
1 CATAA-TC
8261840 CATAATC
1 CATAATC
8261847 CATAATC
1 CATAATC
8261854 CATAA
1 CATAA
8261859 ACCTTGAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (7 bp):
CATAATC
Found at i:8261898 original size:15 final size:14
Alignment explanation
Indices: 8261878--8261917 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
8261868 TATTAACTCA
8261878 TAAACCATAAACCCC
1 TAAACCATAAA-CCC
*
8261893 TAAACCTTAAACCC
1 TAAACCATAAACCC
8261907 TAAACCCATAA
1 TAAA-CCATAA
8261918 TTCATAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:8261925 original size:22 final size:22
Alignment explanation
Indices: 8261875--8261932 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
8261865 AGATATTAAC
*
8261875 TCATAAACCATAAACCCCTAAA
1 TCATAAACCATAAACCCATAAA
* * * *
8261897 CCTTAAACCCTAAACCCATAAT
1 TCATAAACCATAAACCCATAAA
*
8261919 TCATAAACCTTAAA
1 TCATAAACCATAAA
8261933 ATATTAACTC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (22 bp):
TCATAAACCATAAACCCATAAA
Found at i:8261992 original size:14 final size:14
Alignment explanation
Indices: 8261876--8261998 Score: 57
Period size: 14 Copynumber: 8.4 Consensus size: 14
8261866 GATATTAACT
*
8261876 CATAAACCATAAACC
1 CATAAACCTTAAA-C
*
8261891 CCTAAACCTTAAAC
1 CATAAACCTTAAAC
* * **
8261905 CCTAAACCCATAATT
1 CATAAA-CCTTAAAC
*
8261920 CATAAACCTTAAAA
1 CATAAACCTTAAAC
* *
8261934 TATTAACTCATCATAAAC
1 CATAAAC-C-T--TAAAC
*
8261952 CATAAACCCTAAAC
1 CATAAACCTTAAAC
* ** *
8261966 TATATTCCCTAAAC
1 CATAAACCTTAAAC
8261980 CATAAACCTTAAAC
1 CATAAACCTTAAAC
*
8261994 TATAA
1 CATAA
8261999 TGATAAGTAA
Statistics
Matches: 80, Mismatches: 23, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
14 47 0.59
15 22 0.28
16 1 0.01
17 1 0.01
18 9 0.11
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.24
Consensus pattern (14 bp):
CATAAACCTTAAAC
Found at i:8262361 original size:41 final size:41
Alignment explanation
Indices: 8262290--8262486 Score: 279
Period size: 41 Copynumber: 4.8 Consensus size: 41
8262280 TTTGAAAAAA
* * * *
8262290 CGCCGCTATAAAT-AGAGCAATAGCGGCGTTTTTCAAAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
*
8262330 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCTTAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
*
8262371 CGCCGCTATATATCTGAGCATTAGCGGCGTTTTTCATAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
*
8262412 CGCCGCTATAGATTTGAGCATTAGCGGCGTTTTTCATAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
** * * *
8262453 TACCACTATAGATCTGAGCATTAGCTGCGCTTTT
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTT
8262487 GGCAAAACGC
Statistics
Matches: 141, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
40 12 0.09
41 129 0.91
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (41 bp):
CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
Found at i:8262610 original size:39 final size:38
Alignment explanation
Indices: 8262549--8262655 Score: 142
Period size: 39 Copynumber: 2.7 Consensus size: 38
8262539 CTTTACTTTT
8262549 GCGGCGTTTTTTTGCAAACGCCGCTAATGCCTGATCTGTA
1 GCGGCGTTTTTTT--AAACGCCGCTAATGCCTGATCTGTA
* *
8262589 GCGGCGTTTTTTTAAAGCGCCGCTAATGCTTGATCTTTA
1 GCGGCGTTTTTTTAAA-CGCCGCTAATGCCTGATCTGTA
8262628 GCGGCGTTTTTACTTTAAACGCCGCTAA
1 GCGGCG-TTTT--TTTAAACGCCGCTAA
8262656 AAATGCCGCA
Statistics
Matches: 61, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
38 3 0.05
39 26 0.43
40 17 0.28
41 9 0.15
42 6 0.10
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (38 bp):
GCGGCGTTTTTTTAAACGCCGCTAATGCCTGATCTGTA
Found at i:8264041 original size:19 final size:19
Alignment explanation
Indices: 8264019--8264075 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 19
8264009 AAGAAATATT
8264019 AAAATAATTTTTAAAATTC
1 AAAATAATTTTTAAAATTC
* *
8264038 AAAAT-ATTTATAAAAATTT
1 AAAATAATTT-TTAAAATTC
8264057 AAAATTTATATTTTTAAAA
1 AAAA--TA-ATTTTTAAAA
8264076 AATAATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.13
19 16 0.53
21 1 0.03
22 5 0.17
23 4 0.13
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAATAATTTTTAAAATTC
Found at i:8264200 original size:17 final size:17
Alignment explanation
Indices: 8264178--8264216 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
8264168 CGTATTAAAG
*
8264178 TATTTTATTTTTAAAAT
1 TATTTTATTTTGAAAAT
*
8264195 TATTTTGTTTTGAAAAT
1 TATTTTATTTTGAAAAT
8264212 T-TTTT
1 TATTTT
8264217 CAAATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (17 bp):
TATTTTATTTTGAAAAT
Found at i:8264927 original size:15 final size:15
Alignment explanation
Indices: 8264907--8264937 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8264897 TAGTCGGAAT
8264907 AGTGGTTTCGTGACC
1 AGTGGTTTCGTGACC
8264922 AGTGGTTTCGTGACC
1 AGTGGTTTCGTGACC
8264937 A
1 A
8264938 CAAAAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.32, T:0.32
Consensus pattern (15 bp):
AGTGGTTTCGTGACC
Found at i:8266222 original size:46 final size:45
Alignment explanation
Indices: 8266169--8266340 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
8266159 ATATTTGGCA
8266169 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
* * *
8266215 TCCGAACTCGTTGAGTTGAGTCGAGTTCGA--GATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCGAGTTC-ACTTATG-GA-T-GCGAATG
*
8266259 TCCGAGCTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATG
* *
8266304 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGG
8266341 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 31 0.29
45 31 0.29
46 40 0.37
47 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATG
Found at i:8266317 original size:89 final size:91
Alignment explanation
Indices: 8266165--8266332 Score: 295
Period size: 89 Copynumber: 1.9 Consensus size: 91
8266155 TAGGATATTT
*
8266165 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
8266230 TTGAGT-CGAGTTCGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGATGTAACTA
* *
8266255 GGCATCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
8266319 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
8266333 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
89 43 0.58
90 31 0.42
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (91 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGATGTAACTA
Found at i:8269263 original size:15 final size:15
Alignment explanation
Indices: 8269243--8269311 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
8269233 GTATCTTGGG
8269243 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
8269258 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
8269273 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
8269288 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
8269303 TTTCTTTAT
1 TTTCTTTAT
8269312 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:8269312 original size:30 final size:30
Alignment explanation
Indices: 8269234--8269321 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
8269224 CATAGTATCG
* * * *
8269234 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
8269264 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
8269294 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
8269322 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:8271747 original size:46 final size:45
Alignment explanation
Indices: 8271694--8271868 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
8271684 TATTTGGGCA
8271694 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
8271740 TCCGAACTCGTTGAGTTGAGT-CGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
8271786 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
8271832 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8271869 GCGGTTACAT
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 8 0.07
46 84 0.78
47 8 0.07
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:8271847 original size:92 final size:93
Alignment explanation
Indices: 8271690--8271860 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
8271680 AGGATATTTG
* * *
8271690 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
8271755 TTGAGT-CGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
8271782 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
8271847 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
8271861 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 66 0.90
93 7 0.10
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:8274621 original size:18 final size:17
Alignment explanation
Indices: 8274580--8274614 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
8274570 CAAATATTAC
8274580 TATTTATGTATTTTTTA
1 TATTTATGTATTTTTTA
8274597 TATTTAT-TATTTTTTA
1 TATTTATGTATTTTTTA
8274613 TA
1 TA
8274615 GATTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TATTTATGTATTTTTTA
Found at i:8276561 original size:52 final size:52
Alignment explanation
Indices: 8276503--8276624 Score: 133
Period size: 51 Copynumber: 2.4 Consensus size: 52
8276493 TAAGTGATTA
8276503 AAATAATATGGCGGCACCAAAAAATAATTTTTTA-TTTAGTTTAT-ATACCTCC
1 AAATAATATGGCGGCACCAAAAAATAATTTTTTACTTTA-TTT-TGATACCTCC
* * * * * *
8276555 AAATAATGTGTCGTCACC-AAAGATAATTTTTTACTTTATTTTGGTGCCTCC
1 AAATAATATGGCGGCACCAAAAAATAATTTTTTACTTTATTTTGATACCTCC
* *
8276606 AAATTACATGGCGGCACCA
1 AAATAATATGGCGGCACCA
8276625 CAAATATTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
50 1 0.02
51 36 0.64
52 19 0.34
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (52 bp):
AAATAATATGGCGGCACCAAAAAATAATTTTTTACTTTATTTTGATACCTCC
Found at i:8283767 original size:14 final size:14
Alignment explanation
Indices: 8283731--8283783 Score: 70
Period size: 14 Copynumber: 3.8 Consensus size: 14
8283721 TCACCAAACT
* *
8283731 GAAAATGACTTCCG
1 GAAAATGATTTCTG
*
8283745 AAAAATGATTTCTG
1 GAAAATGATTTCTG
*
8283759 GAAAATGATTTTTG
1 GAAAATGATTTCTG
8283773 GAAAATGATTT
1 GAAAATGATTT
8283784 ACTTTTCTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.34
Consensus pattern (14 bp):
GAAAATGATTTCTG
Found at i:8284088 original size:13 final size:15
Alignment explanation
Indices: 8284059--8284090 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
8284049 TTTTTTATTT
8284059 AAAAATGTGACATAA
1 AAAAATGTGACATAA
8284074 AAAAAT-TGACA-AA
1 AAAAATGTGACATAA
8284087 AAAA
1 AAAA
8284091 TTTAACAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 5 0.29
15 6 0.35
ACGTcount: A:0.69, C:0.06, G:0.09, T:0.16
Consensus pattern (15 bp):
AAAAATGTGACATAA
Found at i:8284257 original size:15 final size:15
Alignment explanation
Indices: 8284237--8284288 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
8284227 ACTACAAAAC
8284237 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
8284252 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
8284271 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
8284286 ATT
1 ATT
8284289 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:8286680 original size:46 final size:47
Alignment explanation
Indices: 8286619--8286737 Score: 118
Period size: 46 Copynumber: 2.5 Consensus size: 47
8286609 CGATGCATGT
* * * *
8286619 AGACAAGTCTCACACTAG-TTTACATCTCAAGGCCGTTG-CATGTCCC
1 AGACATGTCTTACACTAGCTCT-CATCTCAAGGCCGATGCCATGTCCC
* *
8286665 AGACATGTCTTACACTAGCTCTCATCTCGATGCCGATGCCATGTCCC
1 AGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGCCATGTCCC
* *
8286712 AAAGATGGTCTTACACT-GACTCTCAT
1 AGACAT-GTCTTACACTAG-CTCTCAT
8286738 AATGTGGCCG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
46 29 0.48
47 15 0.25
48 17 0.28
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
AGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGCCATGTCCC
Found at i:8286755 original size:47 final size:47
Alignment explanation
Indices: 8286649--8286757 Score: 118
Period size: 48 Copynumber: 2.3 Consensus size: 47
8286639 TACATCTCAA
* * *
8286649 GGCCGTTGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATCGAT
*
8286696 -GCCGATGCCATGTCCCAAAGATGGTCTTACACT-GACTCTCATAAT-G-T
1 GGCCGATG-CATGTCCCAAACAT-GTCTTACACTAG-CTCTCAT-ATCGAT
8286743 GGCCGATGCATGTCC
1 GGCCGATGCATGTCC
8286758 TCGACATGTC
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
46 6 0.11
47 21 0.40
48 25 0.47
49 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (47 bp):
GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATCGAT
Found at i:8292286 original size:28 final size:28
Alignment explanation
Indices: 8292246--8292301 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
8292236 TTACAAAGAG
*
8292246 AAAATTAGAATTGAAAGCAATAAGCCTT
1 AAAATTAGAATTGAAAGAAATAAGCCTT
8292274 AAAATTAGAATTGAAAGAAATAAGCCTT
1 AAAATTAGAATTGAAAGAAATAAGCCTT
8292302 TCATTACATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.52, C:0.09, G:0.14, T:0.25
Consensus pattern (28 bp):
AAAATTAGAATTGAAAGAAATAAGCCTT
Found at i:8304816 original size:46 final size:46
Alignment explanation
Indices: 8304693--8304817 Score: 141
Period size: 45 Copynumber: 2.7 Consensus size: 46
8304683 AACCCGACCC
8304693 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCTAG-TACA
**** * *
8304739 TTTCAGAACTC-GACTCAACTCAACGAGTTCGGACATTCGC-A-TCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGC-CTAGTACA
8304784 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8304818 TGCTCAACCA
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
45 31 0.48
46 29 0.45
47 4 0.06
48 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCTAGTACA
Found at i:8307239 original size:15 final size:16
Alignment explanation
Indices: 8307213--8307274 Score: 85
Period size: 15 Copynumber: 4.1 Consensus size: 16
8307203 CAAGGAAACC
8307213 GAATAAAGAAATCCAA
1 GAATAAAGAAATCCAA
*
8307229 G-ATAGAGAAATCC-A
1 GAATAAAGAAATCCAA
8307243 GAATAAAGAAATCC-A
1 GAATAAAGAAATCCAA
*
8307258 GAATAAAGAAACCCAA
1 GAATAAAGAAATCCAA
8307274 G
1 G
8307275 TACGATACTA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
14 2 0.05
15 36 0.88
16 3 0.07
ACGTcount: A:0.58, C:0.15, G:0.16, T:0.11
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:8310414 original size:46 final size:47
Alignment explanation
Indices: 8310223--8310414 Score: 131
Period size: 46 Copynumber: 4.2 Consensus size: 47
8310213 GTAACTCGCC
* * * * *
8310223 CCTAAGTGAACTCGGACTCAACTCAATGAGCT-GG-CGTTC--GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
8310266 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * * *
8310316 -TTCA-CGAACTAGGACTGAACTCAACGAGTTCGGA--CATC--CGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAAC-CAT
8310359 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
8310407 CCT-AGTGA
1 CCTAAGTGA
8310415 CATGTCACTT
Statistics
Matches: 115, Mismatches: 14, Indels: 37
0.69 0.08 0.22
Matches are distributed among these distances:
43 5 0.04
44 28 0.24
45 6 0.05
46 33 0.29
47 31 0.27
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (47 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:8313262 original size:29 final size:30
Alignment explanation
Indices: 8313209--8313266 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
8313199 CGGAAGTTTT
8313209 GGCACTAAGTGTGCGATTTAAACTAGCTTG
1 GGCACTAAGTGTGCGATTTAAACTAGCTTG
*
8313239 GGCACTAAGTTTGCGATTT-AACTAGCTT
1 GGCACTAAGTGTGCGATTTAAACTAGCTT
8313267 CGGCTATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (30 bp):
GGCACTAAGTGTGCGATTTAAACTAGCTTG
Found at i:8316467 original size:18 final size:17
Alignment explanation
Indices: 8316435--8316468 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8316425 ATATGATACT
*
8316435 AAAATTATTAAAAAATG
1 AAAATTATAAAAAAATG
8316452 AAAATATATAAAAAAAT
1 AAAAT-TATAAAAAAAT
8316469 CCGGGAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAATTATAAAAAAATG
Found at i:8316756 original size:22 final size:21
Alignment explanation
Indices: 8316721--8316851 Score: 77
Period size: 19 Copynumber: 6.7 Consensus size: 21
8316711 AAAAGGTATC
* *
8316721 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
8316742 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
8316765 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
8316784 TAC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
8316802 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
8316819 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
8316838 TGCATATCATATCT
1 TACAAATCATATCT
8316852 AAGATTGCAT
Statistics
Matches: 95, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
17 15 0.16
18 15 0.16
19 36 0.38
21 4 0.04
22 15 0.16
23 10 0.11
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:8316764 original size:23 final size:22
Alignment explanation
Indices: 8316721--8316796 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
8316711 AAAAGGTATC
* *
8316721 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
8316742 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
8316765 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
8316784 TAC-AATCATATCT
1 TACAAATCATATCT
8316797 AAGATTGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
18 6 0.14
19 10 0.23
21 3 0.07
22 15 0.34
23 10 0.23
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:8316781 original size:19 final size:19
Alignment explanation
Indices: 8316757--8316866 Score: 190
Period size: 19 Copynumber: 5.9 Consensus size: 19
8316747 AATCATATCT
8316757 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
8316776 TCTAAGATTACA-ATCATA
1 TCTAAGATTGCATATCATA
8316794 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
8316811 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8316830 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8316849 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
8316867 TGAAGATTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
17 16 0.19
18 15 0.17
19 55 0.64
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8317025 original size:21 final size:21
Alignment explanation
Indices: 8316986--8317026 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8316976 TGGACTTTGT
* **
8316986 TTTTTTTTTTTGGGTTTATTA
1 TTTTTGTTTTTGGACTTATTA
8317007 TTTTTGTTTTTGGACTTATT
1 TTTTTGTTTTTGGACTTATT
8317027 TCTGGTCCCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.02, G:0.15, T:0.73
Consensus pattern (21 bp):
TTTTTGTTTTTGGACTTATTA
Found at i:8317291 original size:45 final size:45
Alignment explanation
Indices: 8317232--8317492 Score: 224
Period size: 45 Copynumber: 5.8 Consensus size: 45
8317222 TGCTATATTT
* *
8317232 GATCTGCTCTCCGTCTAATACAGGGACGCCAAATCTGTTATCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
8317277 GATATGCTCCCCGTCTAATACAGAGACACCAAATATGCT-TCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * * * * *
8317321 AATCTGCTCCCTGTCCAATACATAGATGCTAAATCTGTTATCTCC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
8317366 GATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTG
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * * * * *
8317411 GATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCTATGTCTTC
1 GATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTG-T-TATCTTC
*
8317458 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
8317493 ATCTTGGATC
Statistics
Matches: 165, Mismatches: 42, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
43 6 0.04
44 39 0.24
45 89 0.54
46 1 0.01
47 19 0.12
48 5 0.03
49 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (45 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
Found at i:8317561 original size:78 final size:78
Alignment explanation
Indices: 8317432--8317881 Score: 690
Period size: 78 Copynumber: 5.8 Consensus size: 78
8317422 ATGTAAACAC
8317432 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
8317497 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
8317510 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCTGTCTAATACAGAGATACCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
8317574 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
8317588 ATGAAGGTCAGATTTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT-T
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
8317652 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
8317665 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACTGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
8317729 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
8317743 ATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
8317808 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * **
8317821 ATGAAGGTCAGATCTACCATGTCTTCGATCTGCTCTCAGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
8317882 TGTTTCTTCG
Statistics
Matches: 336, Mismatches: 31, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
77 73 0.22
78 261 0.78
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:8317717 original size:155 final size:156
Alignment explanation
Indices: 8317432--8317881 Score: 744
Period size: 155 Copynumber: 2.9 Consensus size: 156
8317422 ATGTAAACAC
*
8317432 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
8317497 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTTGATCTGCTCCCTGTCTAATACAGAGA
66 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACTGAGA
*
8317562 TACCAAATCATCTTGGATCTGCTTCA
131 TGCCAAATCATCTTGGATCTGCTTCA
*
8317588 ATGAAGGTCAGATTTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT-T
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
8317652 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACTGAGA
66 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACTGAGA
8317717 TGCCAAATCATCTTGGATCTGCTTCA
131 TGCCAAATCATCTTGGATCTGCTTCA
* *
8317743 ATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATTATCT
1 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*** * * *
8317808 TGGATCTGCTTCAATGAAGGT-CAGATCTACCATGTCTTCGATCTGCTCTCAGTCGAATA-TGGA
66 TGGATCTGCTTCAATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACT-GA
8317871 GATGCCAAATC
129 GATGCCAAATC
8317882 TGTTTCTTCG
Statistics
Matches: 277, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
155 152 0.55
156 125 0.45
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (156 bp):
ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACTGAGA
TGCCAAATCATCTTGGATCTGCTTCA
Found at i:8317846 original size:233 final size:233
Alignment explanation
Indices: 8317432--8317881 Score: 697
Period size: 233 Copynumber: 1.9 Consensus size: 233
8317422 ATGTAAACAC
8317432 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* ** *
8317497 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTTGATCTGCTCCCTGTCTAATACAGAGA
66 TGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGA
* * ** *
8317562 TACCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATTTGCTGTGTCTTCGATCTGCTCCCCG
131 TACCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTACCATGTCTTCGATCTGCTCCCAG
*
8317627 TCTAATACAGAGATGCCAAATCATTTGGATCTGCTTCA
196 TCGAATACAGAGATGCCAAATCATTTGGATCTGCTTCA
* * *
8317665 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACTGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
8317729 TTGGATCTGCTTCAATGAAGGT-CAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGA
65 TTGGATCTGCTTCAATGAAGGTCCA-ATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGA
* * *
8317793 GATGCCAAATTATCTTGGATCTGCTTCAATGAAGGTCAGATCTACCATGTCTTCGATCTGCTCTC
129 GATACCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTACCATGTCTTCGATCTGCTCCC
**
8317858 AGTCGAATATGGAGATGCCAAATC
194 AGTCGAATACAGAGATGCCAAATC
8317882 TGTTTCTTCG
Statistics
Matches: 196, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
232 2 0.01
233 192 0.98
234 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (233 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGA
TACCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTACCATGTCTTCGATCTGCTCCCAG
TCGAATACAGAGATGCCAAATCATTTGGATCTGCTTCA
Found at i:8318381 original size:218 final size:220
Alignment explanation
Indices: 8317823--8318410 Score: 930
Period size: 220 Copynumber: 2.7 Consensus size: 220
8317813 CTGCTTCAAT
* * * *
8317823 GAAGGTCAGATCTACCATGTCTTCGATCTGCTCTCAGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
8317888 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* * * *
8317953 TGAAAGCCAAATCTGCTATGTTTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTACTATGTCTTCGATCTGCTACTTGTAAACGCAAGGATGCCAAATCATCTTG
8318018 GATCTACTTCGATGTGAAAACATCC
196 GATCTACTTCGATGTGAAAACATCC
* * *
8318043 AAAGGTTAGATCTGGTATGTCTTCTATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
8318108 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTACTTCAGCATAAACACG
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
8318173 TGAAAGCCAAATCTACTATGTCTTCGATCTGCTACTTGTAAACGTAAGGATGCCAAATCAT-TTG
131 TGAAAGCCAAATCTACTATGTCTTCGATCTGCTACTTGTAAACGCAAGGATGCCAAATCATCTTG
8318237 GATCTACTT-GATGTGAAAACATCC
196 GATCTACTTCGATGTGAAAACATCC
* *
8318261 GAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATTTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * ** *
8318326 TTCGATTTGTTCTCTGACAATATAGAGATGTTAAATCATCTTGGAT-TCGCTTCAGCGTAAACAC
66 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCT-GCTTCAGCGTAAACAC
* * *
8318390 CTGAAGGTCAAATCTACTATG
130 GTGAAAGCCAAATCTACTATG
8318411 CTTTAGCCTG
Statistics
Matches: 338, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
217 1 0.00
218 148 0.44
219 12 0.04
220 177 0.52
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCCAAATCTACTATGTCTTCGATCTGCTACTTGTAAACGCAAGGATGCCAAATCATCTTG
GATCTACTTCGATGTGAAAACATCC
Found at i:8329947 original size:16 final size:17
Alignment explanation
Indices: 8329916--8329948 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8329906 GATATGATAC
*
8329916 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
8329933 TAAAA-TATAAAAAAAT
1 TAAAATTATAAAAAAAT
8329949 CTGGGAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:8330264 original size:19 final size:19
Alignment explanation
Indices: 8330239--8330328 Score: 141
Period size: 19 Copynumber: 4.9 Consensus size: 19
8330229 ATCATATCTC
8330239 CTAAGATTGCATATCATAT
1 CTAAGATTGCATATCATAT
*
8330258 TTAAGATTGCA-ATCATAT
1 CTAAGATTGCATATCATAT
8330276 CTAAGATTG--TATCATAT
1 CTAAGATTGCATATCATAT
*
8330293 CTAATATTGCATATCATAT
1 CTAAGATTGCATATCATAT
8330312 CTAAGATTGCATATCAT
1 CTAAGATTGCATATCAT
8330329 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
17 15 0.23
18 15 0.23
19 34 0.53
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (19 bp):
CTAAGATTGCATATCATAT
Found at i:8330316 original size:36 final size:36
Alignment explanation
Indices: 8330239--8330328 Score: 128
Period size: 35 Copynumber: 2.4 Consensus size: 36
8330229 ATCATATCTC
*
8330239 CTAAGATTGCATATCATATTTAAGATTGCAATCATAT
1 CTAAGATTG-ATATCATATCTAAGATTGCAATCATAT
*
8330276 CTAAGATTG-TATCATATCTAATATTGCATATCATAT
1 CTAAGATTGATATCATATCTAAGATTGCA-ATCATAT
8330312 CTAAGATTGCATATCAT
1 CTAAGATTG-ATATCAT
8330329 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
35 17 0.35
36 16 0.33
37 9 0.19
38 6 0.12
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (36 bp):
CTAAGATTGATATCATATCTAAGATTGCAATCATAT
Found at i:8338301 original size:6 final size:6
Alignment explanation
Indices: 8338279--8338325 Score: 62
Period size: 6 Copynumber: 8.0 Consensus size: 6
8338269 AGGTGAAATT
*
8338279 AATAAA AACATAA AATAAA AATAAA AAT-AA AAT-AA AATAAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
8338326 CATCATCGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 10 0.27
6 22 0.59
7 5 0.14
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:8338304 original size:11 final size:11
Alignment explanation
Indices: 8338283--8338325 Score: 61
Period size: 11 Copynumber: 3.8 Consensus size: 11
8338273 GAAATTAATA
8338283 AAAACATAAAAT
1 AAAA-ATAAAAT
8338295 AAAAATAAAA-
1 AAAAATAAAAT
8338305 ATAAAATAAAAT
1 A-AAAATAAAAT
8338317 AAAAATAAA
1 AAAAATAAA
8338326 CATCATCGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 1 0.03
11 23 0.79
12 5 0.17
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:8342961 original size:55 final size:55
Alignment explanation
Indices: 8342828--8342964 Score: 150
Period size: 55 Copynumber: 2.5 Consensus size: 55
8342818 TGTTAAGGGC
* * **
8342828 CACGCCCGTGTTATTTTGGTAGGTTCACCCATGGTTTCTTGGCACGAGCGTGTCT
1 CACGCCCGTGTTATTTTGGCAGGTTCAACCATGGTTTCAAGGCACGAGCGTGTCT
* * * * * *
8342883 CACGCCCATGTTAATTTGACAGGTTCAACCATGGTTTCAAGGCATGGGCTTGT-T
1 CACGCCCGTGTTATTTTGGCAGGTTCAACCATGGTTTCAAGGCACGAGCGTGTCT
* *
8342937 GCACGCCCGTATTGTTTTGGCAGGTTCA
1 -CACGCCCGTGTTATTTTGGCAGGTTCA
8342965 CCCACGACCA
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
54 1 0.02
55 65 0.98
ACGTcount: A:0.17, C:0.24, G:0.26, T:0.33
Consensus pattern (55 bp):
CACGCCCGTGTTATTTTGGCAGGTTCAACCATGGTTTCAAGGCACGAGCGTGTCT
Found at i:8343600 original size:30 final size:30
Alignment explanation
Indices: 8343559--8343615 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8343549 AAAAACGCTA
* * *
8343559 CTAACAACAGAGCAATAGTGGCGTTTTAAG
1 CTAAAAACAGAGCAATAGCGGCATTTTAAG
8343589 CTAAAAACAGAGCAATAGCGGCATTTT
1 CTAAAAACAGAGCAATAGCGGCATTTT
8343616 GGTAAAACGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.23
Consensus pattern (30 bp):
CTAAAAACAGAGCAATAGCGGCATTTTAAG
Found at i:8343797 original size:41 final size:41
Alignment explanation
Indices: 8343588--8343790 Score: 266
Period size: 41 Copynumber: 5.0 Consensus size: 41
8343578 GGCGTTTTAA
* * *
8343588 GCTAAAAA-CAGAGCAATAGCGGC-ATTTTGGTAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCC
** * * *
8343627 ATTAAAAAACAAAGCAATAGCGGCGCTTTCGGTAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCC
*
8343668 GCTAAAAACCAGAGCATTAGCGGCGCTTTCAGTAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCC
* *
8343709 GCTAAAAACCAGAGCATTAGCGACGCTTTCTGTAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCC
** *
8343750 GCTAAAAACCAGAGCATTAGCAACACTTTCGGTAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCC
8343791 ATTAAAATTC
Statistics
Matches: 146, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 6 0.04
40 14 0.10
41 126 0.86
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (41 bp):
GCTAAAAACCAGAGCATTAGCGGCGCTTTCGGTAAAACGCC
Found at i:8343926 original size:54 final size:55
Alignment explanation
Indices: 8343808--8343926 Score: 170
Period size: 54 Copynumber: 2.2 Consensus size: 55
8343798 TTCATATAAC
* * *
8343808 CCCTAAA-CCTTAAACCCCAAAAAAATCATAAACACTAAGCTATAACCCCTAAAA
1 CCCTAAACCCCTAAACCCCAAAAAAACCATAAACACTAAACTATAACCCCTAAAA
* * *
8343862 CACTAAACCCCTAAA-CCCTAAAAAACCATAAACACTAAACTATAACCCTTAAAA
1 CCCTAAACCCCTAAACCCCAAAAAAACCATAAACACTAAACTATAACCCCTAAAA
8343916 CCCTAAACCCC
1 CCCTAAACCCC
8343927 AAAAAACATC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 51 0.89
55 6 0.11
ACGTcount: A:0.49, C:0.34, G:0.01, T:0.16
Consensus pattern (55 bp):
CCCTAAACCCCTAAACCCCAAAAAAACCATAAACACTAAACTATAACCCCTAAAA
Found at i:8346311 original size:22 final size:21
Alignment explanation
Indices: 8346281--8346327 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
8346271 TACAAATTAA
8346281 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
8346303 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
8346324 ATCT
1 ATCT
8346328 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:8346333 original size:19 final size:19
Alignment explanation
Indices: 8346298--8346393 Score: 146
Period size: 17 Copynumber: 5.2 Consensus size: 19
8346288 AGATTACAAG
8346298 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
8346319 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
8346336 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
8346353 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8346372 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8346391 ATC
1 ATC
8346394 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 34 0.47
19 30 0.41
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:8346777 original size:66 final size:65
Alignment explanation
Indices: 8346693--8346895 Score: 219
Period size: 66 Copynumber: 3.1 Consensus size: 65
8346683 CCTAACCCCT
* *
8346693 TAAATCAACAATCTTTTAAACCCCAGACCCTAAATCTCTAATCATAAACCCTTAAAACTATAAAC
1 TAAA-CAATAATC-TTTAAACCCCAGACCCTAAATCTCAAATCATAAACCCTTAAAACTATAAAC
*
8346758 AC
64 AA
* * * * *
8346760 TAATCAATAACTCTTTAAACACCAGACCCTAAATATCAAATCATATACCCTTAAAACTCTAAACA
1 TAAACAATAA-TCTTTAAACCCCAGACCCTAAATCTCAAATCATAAACCCTTAAAACTATAAACA
8346825 A
65 A
** * * * * * *
8346826 TAAACCTTAATC-CTAACACCCTAAACTCTAAATCTCAAATCATAAACCCTTAAAACTATAACCC
1 TAAACAATAATCTTTAA-ACCCCAGACCCTAAATCTCAAATCATAAACCCTTAAAACTATAAACA
8346890 A
65 A
8346891 TAAAC
1 TAAAC
8346896 CCCAACCCCT
Statistics
Matches: 113, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
64 3 0.03
65 46 0.41
66 59 0.52
67 5 0.04
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (65 bp):
TAAACAATAATCTTTAAACCCCAGACCCTAAATCTCAAATCATAAACCCTTAAAACTATAAACAA
Found at i:8346879 original size:22 final size:23
Alignment explanation
Indices: 8346785--8346897 Score: 62
Period size: 22 Copynumber: 5.2 Consensus size: 23
8346775 TAAACACCAG
* *
8346785 ACCC-TAAATATC-AAATCATAT
1 ACCCTTAAATCTCTAAATCATAA
*
8346806 ACCCTTAAAACTCTAAA-CAATAA
1 ACCCTTAAATCTCTAAATC-ATAA
* *
8346829 A-CCTT-AATC-CTAACACCCTAA
1 ACCCTTAAATCTCTAA-ATCATAA
*
8346850 ACTC-TAAATCTC-AAATCATAA
1 ACCCTTAAATCTCTAAATCATAA
* * **
8346871 ACCCTTAAAACTATAACCCATAA
1 ACCCTTAAATCTCTAAATCATAA
8346894 ACCC
1 ACCC
8346898 CAACCCCTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
20 4 0.06
21 21 0.30
22 25 0.36
23 19 0.28
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (23 bp):
ACCCTTAAATCTCTAAATCATAA
Found at i:8347205 original size:8 final size:8
Alignment explanation
Indices: 8347194--8347261 Score: 74
Period size: 8 Copynumber: 9.1 Consensus size: 8
8347184 TCAAAAAATT
8347194 AAAATTTA
1 AAAATTTA
8347202 AAAATTTA
1 AAAATTTA
8347210 AAAA-TT-
1 AAAATTTA
8347216 AAAATTTA
1 AAAATTTA
8347224 AAAA--TA
1 AAAATTTA
8347230 AAAA-TTA
1 AAAATTTA
**
8347237 AAAAAATA
1 AAAATTTA
*
8347245 AAAACTTA
1 AAAATTTA
8347253 AAAATTTA
1 AAAATTTA
8347261 A
1 A
8347262 TATTTTAATC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
6 10 0.19
7 10 0.19
8 32 0.62
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.29
Consensus pattern (8 bp):
AAAATTTA
Found at i:8347255 original size:7 final size:7
Alignment explanation
Indices: 8347187--8347258 Score: 83
Period size: 7 Copynumber: 10.0 Consensus size: 7
8347177 AATAAACTCA
8347187 AAAAATT
1 AAAAATT
*
8347194 AAAATTT
1 AAAAATT
8347201 AAAAATTT
1 AAAAA-TT
8347209 AAAAATT
1 AAAAATT
*
8347216 AAAATTT
1 AAAAATT
8347223 AAAAA-T
1 AAAAATT
8347229 AAAAATT
1 AAAAATT
*
8347236 AAAAAAAT
1 -AAAAATT
8347244 AAAAACTT
1 AAAAA-TT
8347252 AAAAATT
1 AAAAATT
8347259 TAATATTTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
6 6 0.11
7 30 0.55
8 19 0.35
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:8351233 original size:19 final size:19
Alignment explanation
Indices: 8351188--8351239 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
8351178 TTAATCTAAT
*
8351188 TTTTATTATT-TA-TTTTAG
1 TTTTATT-TTATATTTTTAA
8351206 TTTTGATTTTATATTTTTAA
1 TTTT-ATTTTATATTTTTAA
8351226 TTTTATTTTA-ATTT
1 TTTTATTTTATATTT
8351240 GATAAGATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 10 0.33
19 11 0.37
20 9 0.30
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (19 bp):
TTTTATTTTATATTTTTAA
Found at i:8351456 original size:43 final size:44
Alignment explanation
Indices: 8351367--8351469 Score: 145
Period size: 43 Copynumber: 2.4 Consensus size: 44
8351357 TTTTAAATTT
* **
8351367 CATGACCTTTAGCGTCATTTGTGGGAAAAAGCGCCGCTAAAGGC
1 CATGACCTTTAGCGGCATTTGTGGGAAAAAGCGCCAATAAAGGC
* *
8351411 CATGACCTTTAGCGGCGTTTGTGGG-AGAAGCGCCAATAAAGGC
1 CATGACCTTTAGCGGCATTTGTGGGAAAAAGCGCCAATAAAGGC
*
8351454 CATGACCGTTAGCGGC
1 CATGACCTTTAGCGGC
8351470 TTTTTTTTTC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 30 0.57
44 23 0.43
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.21
Consensus pattern (44 bp):
CATGACCTTTAGCGGCATTTGTGGGAAAAAGCGCCAATAAAGGC
Found at i:8356363 original size:5 final size:5
Alignment explanation
Indices: 8356353--8356384 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
8356343 GGCTTTGTGA
8356353 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
8356385 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:8356378 original size:9 final size:9
Alignment explanation
Indices: 8356354--8356384 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
8356344 GCTTTGTGAA
8356354 AAATAAAAT
1 AAATAAAAT
8356363 AAAATAAAAT
1 -AAATAAAAT
8356373 AAATAAAAT
1 AAATAAAAT
8356382 AAA
1 AAA
8356385 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:8360813 original size:5 final size:5
Alignment explanation
Indices: 8360803--8360834 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
8360793 CAATTTGTGA
8360803 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
8360835 GAACACACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:8360828 original size:9 final size:9
Alignment explanation
Indices: 8360804--8360834 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
8360794 AATTTGTGAA
8360804 AAATAAAAT
1 AAATAAAAT
8360813 AAAATAAAAT
1 -AAATAAAAT
8360823 AAATAAAAT
1 AAATAAAAT
8360832 AAA
1 AAA
8360835 GAACACACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:8362475 original size:17 final size:19
Alignment explanation
Indices: 8362433--8362476 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8362423 ATGAAATTTT
*
8362433 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
8362452 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
8362470 AA-TATTA
1 AATTATTA
8362477 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:8364158 original size:11 final size:11
Alignment explanation
Indices: 8364142--8364195 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
8364132 CATGGTATGT
8364142 ATGATATGCAC
1 ATGATATGCAC
*
8364153 ATGATATG--T
1 ATGATATGCAC
*
8364162 ATAATATGCAC
1 ATGATATGCAC
*
8364173 ATGATATG--T
1 ATGATATGCAC
8364182 ATGATATGCAC
1 ATGATATGCAC
8364193 ATG
1 ATG
8364196 GTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:8364160 original size:20 final size:20
Alignment explanation
Indices: 8364131--8364195 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
8364121 ATTTTGATAA
*
8364131 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
8364151 ACATGATATGTATAATATGC
1 ACATGATATGTATGATATGC
8364171 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
8364191 ACATG
1 ACATG
8364196 GTGTATTCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:8364366 original size:24 final size:23
Alignment explanation
Indices: 8364246--8364364 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
8364236 AGGAAGTGCA
8364246 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
8364269 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
8364292 GAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
8364315 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
8364338 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
8364362 AAA
1 AAA
8364365 AGAGGCTAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
23 70 0.76
24 22 0.24
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:8364614 original size:31 final size:31
Alignment explanation
Indices: 8364579--8364642 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
8364569 CGTTTACAGT
*
8364579 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
**
8364610 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
8364641 AA
1 AA
8364643 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:8371105 original size:3 final size:3
Alignment explanation
Indices: 8371097--8371170 Score: 141
Period size: 3 Copynumber: 25.0 Consensus size: 3
8371087 AATAGAATTG
8371097 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8371145 TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
8371171 AGGGACTCAA
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 68 0.97
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8378087 original size:22 final size:21
Alignment explanation
Indices: 8378057--8378103 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
8378047 TACAAATTAA
8378057 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
8378079 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
8378100 ATCT
1 ATCT
8378104 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:8378109 original size:19 final size:19
Alignment explanation
Indices: 8378074--8378152 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
8378064 AGATTACAAG
8378074 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
8378095 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
8378112 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8378131 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8378150 ATC
1 ATC
8378153 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:8378129 original size:36 final size:38
Alignment explanation
Indices: 8378074--8378146 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
8378064 AGATTACAAG
8378074 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
8378112 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
8378147 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:8378161 original size:36 final size:35
Alignment explanation
Indices: 8378075--8378162 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
8378065 GATTACAAGA
8378075 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
8378111 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
8378147 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
8378163 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:8378626 original size:87 final size:87
Alignment explanation
Indices: 8378525--8378739 Score: 217
Period size: 87 Copynumber: 2.4 Consensus size: 87
8378515 AATCTGCTAC
*
8378525 CTTCGATTCT-TTCCTTGACAATATAGAGATGTCAAATCATCTTGGATCTGCTTCAGCAT-AAAC
1 CTTCGATT-TGTTCCTTGACAATATAGAGATG-CAAATCATCTTGGATCTGCTTCAACATGAAA-
8378588 ACAT-GAAGGTCAGATCTGCTATGT
63 ACATCGAAGGTCAGATCTGCTATGT
* * **
8378612 CTTCGATTTGTTCCTTGTA-AACACA-ATGATGCTAAATCATCTTGGATCTGCTTCAATGTGAAA
1 CTTCGATTTGTTCCTTG-ACAATATAGA-GATGC-AAATCATCTTGGATCTGCTTCAACATGAAA
*
8378675 ATATCCGAAGGTCAGATCTGCTATGT
63 ACAT-CGAAGGTCAGATCTGCTATGT
* * *
8378701 CTTCGATCTGTTCTCTT-TCGAATATGGAGATGCCAAATC
1 CTTCGATTTGTTC-CTTGAC-AATATAGAGATG-CAAATC
8378740 TGTTTCTTCA
Statistics
Matches: 105, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
86 3 0.03
87 49 0.47
88 4 0.04
89 32 0.30
90 15 0.14
91 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (87 bp):
CTTCGATTTGTTCCTTGACAATATAGAGATGCAAATCATCTTGGATCTGCTTCAACATGAAAACA
TCGAAGGTCAGATCTGCTATGT
Found at i:8378871 original size:220 final size:220
Alignment explanation
Indices: 8378476--8379489 Score: 1557
Period size: 220 Copynumber: 4.6 Consensus size: 220
8378466 TGTCATGTTG
* * ** * ** *
8378476 ATGTTTTCGATCTTCTCTCCGTCGAATACAGAGATGTCAAATCTGCTACCTTCGATTCT-TTC-C
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTG-TTTCTTCAATT-TGTTCTC
* * ** *
8378539 TTGACAATATAGAGATGTCAAATCATCTTGGATCTGCTTCAGCATAAACACATGAAGGTCAGATC
64 -TGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATC
* * *
8378604 TGCTATGTCTTCGATTTGTTCCTTGTAAACACAATG-ATGCTAAATCATCTTGGATCTGCTTCAA
128 TGCTATGTCTTCGATTTGCTCCTTGTAAACACAA-GAATGCCAAATCATCTTGGATCTGCTTCGA
* *
8378668 TGTGAAAATATCCGAAGGTCAGATCTGCT
192 TGTGAAAACATCCAAAGGTCAGATCTGCT
** **
8378697 ATGTCTTCGATCTGTTCTCTTTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
* * *
8378762 ACAATACAGAGATGTCAAATCATCTTAGATCTGCTTCAATGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
8378827 TATGTCTTTGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
8378892 AAAACATCCAAACGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
*
8378917 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
* *
8378982 ACAATACAGAGAAGCCAAATCGTCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
8379047 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
8379112 AAAACATCCAAAGGTCAGATTTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* * **
8379137 ATGTCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTAGG
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
* *
8379202 ATAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
*
8379267 TATGTCTTTGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
8379332 AAAACATCCAAAGGTCAGATCTACT
196 AAAACATCCAAAGGTCAGATCTGCT
* * *
8379357 ATGTCTTCGGTCTACTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
* * * *
8379422 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCGTGAACACCTGAAGGCCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
8379487 TAT
131 TAT
8379490 ACTTTAACCT
Statistics
Matches: 732, Mismatches: 58, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
219 2 0.00
220 692 0.95
221 38 0.05
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
AAAACATCCAAAGGTCAGATCTGCT
Found at i:8380532 original size:7 final size:7
Alignment explanation
Indices: 8380520--8380584 Score: 60
Period size: 7 Copynumber: 8.9 Consensus size: 7
8380510 GGCCTCTCCA
8380520 TTTTTTC
1 TTTTTTC
8380527 TTTTTTC
1 TTTTTTC
8380534 TTTTTTC
1 TTTTTTC
*
8380541 TCTTTTTT
1 T-TTTTTC
*
8380549 TTATTTTT
1 TT-TTTTC
8380557 TCTTTTTC
1 T-TTTTTC
8380565 TTTTCTT-
1 TTTT-TTC
*
8380572 TTTTTCC
1 TTTTTTC
8380579 TTTTTT
1 TTTTTT
8380585 TTAAATGGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
6 1 0.02
7 28 0.57
8 19 0.39
9 1 0.02
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTC
Found at i:8380550 original size:18 final size:18
Alignment explanation
Indices: 8380527--8380586 Score: 79
Period size: 18 Copynumber: 3.3 Consensus size: 18
8380517 CCATTTTTTC
8380527 TTTTTTCTTTTTTCTCTT
1 TTTTTTCTTTTTTCTCTT
*
8380545 TTTTTTATTTTTTCT-TT
1 TTTTTTCTTTTTTCTCTT
8380562 TTCTTTTCTTTTTT-TCCTT
1 TT-TTTTCTTTTTTCT-CTT
8380581 TTTTTT
1 TTTTTT
8380587 AAATGGATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
17 5 0.14
18 28 0.76
19 4 0.11
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTCTTTTTTCTCTT
Found at i:8382370 original size:44 final size:43
Alignment explanation
Indices: 8382320--8382561 Score: 130
Period size: 44 Copynumber: 5.5 Consensus size: 43
8382310 GTTTGCTTCA
*
8382320 TTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCTC
1 TTGCTACCTCA-GAAGATAAGACTACAATCTTCAATCTGCTCTC
* ***** ** * * *
8382364 TTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATTTTCTCCC
1 TTGCTACCTCAGA-AGATAAGACTACAATCTTCAATCTGCTCTC
* * ** * *
8382408 CTACTACCTCTAGAAGATAAGTTTCACCATCTTCGATCTGCTC-C
1 TTGCTACCTC-AGAAGATAAGACT-ACAATCTTCAATCTGCTCTC
* * * * * * *
8382452 ACTACTA-TTTAGGGAGATAAGGTCTACAATCTTCAGTCTGCT-TCC
1 -TTGCTACCTCA-GAAGATAA-GACTACAATCTTCAATCTGCTCT-C
* *
8382497 TTGCTACCTCAGGAAAATAAGACTACAATCTTCAACCTGCTCTC
1 TTGCTACCTCA-GAAGATAAGACTACAATCTTCAATCTGCTCTC
8382541 TTGCTACCTCAGAGAGATAAG
1 TTGCTACCTCAGA-AGATAAG
8382562 GCTAGTGGAT
Statistics
Matches: 144, Mismatches: 43, Indels: 22
0.69 0.21 0.11
Matches are distributed among these distances:
43 5 0.03
44 108 0.75
45 31 0.22
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (43 bp):
TTGCTACCTCAGAAGATAAGACTACAATCTTCAATCTGCTCTC
Found at i:8383007 original size:171 final size:170
Alignment explanation
Indices: 8382266--8383172 Score: 1156
Period size: 177 Copynumber: 5.2 Consensus size: 170
8382256 TTCTTCGTCG
* * * *
8382266 TCTTTGATCTACTCCACTGCTATCTCAGGGAGATGAGATCTTTAGTTTGCTTCATTGCTACCTCA
1 TCTTCGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTTTAGTTTGCTTCCTTGCTACCTCA
8382331 GGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
66 GGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
* *
8382396 AAATTTTCTCCCCTACTACCTCTAGAAGATAAGTTTCACCA
131 AAATTTGCTCCCCTACTACCT-TAGAAGATAAGATTCACCA
* * * *
8382437 TCTTCGATCTGCTCCACTACTAT-TTAGGGAGATAAGGTCTACAATCTTCAGTCTGCTTCCTTGC
1 TCTTCGATCTGCTCCACTACTATCTCAGGGAGAT---G---A-GATCTTTAGTTTGCTTCCTTGC
* *
8382501 TACCTCAGGAAAATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
59 TACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTG
* * * * *
8382566 GTGGATAAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCATCA
124 GTGGCTAAAATTTGCTCCCCTACTACCTT-AGAAGATAAGATTCACCA
* * * **
8382614 TCTTCGATCTGCTCCACTACT-GCTTAGGGAGATAAGATCTTCAATCTTCAGTCAGCTTCCTTAG
1 TCTTCGATCTGCTCCACTACTATCTCAGGGAGATGAGA---TC--T-TT-AGTTTGCTTCCTT-G
* ** * *
8382678 -TACCTCAAGAAGATAAGACTACAATCTTCAACCTATTCTCTTGCTACTTTAGAGAGATAAGGCT
58 CTACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
* * * * * *
8382742 AGTGGTTAAAATCTGCT-CCCTGCTACCTTGGGAAGATAAGATTCGCCA
123 GGTGGCTAAAATTTGCTCCCCTACTACCTT-AGAAGATAAGATTCACCA
* *
8382790 TCTTCGATCTGCTCCACTGCTATCTCAGGGAGATGAGATCTTTAGTTTGCTTCATTGCTACCTCA
1 TCTTCGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTTTAGTTTGCTTCCTTGCTACCTCA
* *
8382855 AGAAGATAAGACTACAATCTTCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
66 GGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
* *
8382920 AAATTTGCTCCCCTGCCACCTTAGAAAGATAAGATTCACCA
131 AAATTTGCTCCCCTACTACCTTAG-AAGATAAGATTCACCA
* * *
8382961 TCTTCGATCTGCTCCACTGCTATCTCAGGGAGATGAGATCTTTAGTTTACTTCCTTACTACCTCA
1 TCTTCGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTTTAGTTTGCTTCCTTGCTACCTCA
* *
8383026 GGAAGATAAGACTACAATCTTCAACCTGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGCTA
66 GGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
* * **
8383091 AAATTTTCTCCCCTACTACCTCTAGAAGATAAGTTTCACTG
131 AAATTTGCTCCCCTACTACCT-TAGAAGATAAGATTCACCA
* *
8383132 TCTTCGATCTGCTCCATTACTATCTTAGGGAGATGAGATCT
1 TCTTCGATCTGCTCCACTACTATCTCAGGGAGATGAGATCT
8383173 ATGAATTCAC
Statistics
Matches: 648, Mismatches: 66, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
169 1 0.00
170 94 0.15
171 241 0.37
172 4 0.01
173 3 0.00
174 2 0.00
175 1 0.00
176 51 0.08
177 250 0.39
178 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (170 bp):
TCTTCGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTTTAGTTTGCTTCCTTGCTACCTCA
GGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
AAATTTGCTCCCCTACTACCTTAGAAGATAAGATTCACCA
Found at i:8384058 original size:17 final size:17
Alignment explanation
Indices: 8384036--8384068 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8384026 CTCTGAGGAT
*
8384036 TTTTTTGATTTTTTTAA
1 TTTTTTGATTTATTTAA
8384053 TTTTTTGATTTATTTA
1 TTTTTTGATTTATTTA
8384069 TTTGGTCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (17 bp):
TTTTTTGATTTATTTAA
Found at i:8387613 original size:24 final size:23
Alignment explanation
Indices: 8387586--8387637 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
8387576 ATGACCTTTG
* *
8387586 TTTTATTGTTTTTATTCTTTTTTAT
1 TTTTATT-TGTTTATT-TTTTTTAC
8387611 TTTTATTTGTTTATTTTTTTTAC
1 TTTTATTTGTTTATTTTTTTTAC
8387634 TTTT
1 TTTT
8387638 TTTTTCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 11 0.44
24 7 0.28
25 7 0.28
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.81
Consensus pattern (23 bp):
TTTTATTTGTTTATTTTTTTTAC
Found at i:8387638 original size:24 final size:25
Alignment explanation
Indices: 8387586--8387638 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
8387576 ATGACCTTTG
*
8387586 TTTTATTGTTTTTATTCTTTTTTAT
1 TTTTATTGTGTTTATTCTTTTTTAT
8387611 TTTTATT-TGTTTATT-TTTTTTACT
1 TTTTATTGTGTTTATTCTTTTTTA-T
8387635 TTTT
1 TTTT
8387639 TTTTCTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 7 0.27
24 12 0.46
25 7 0.27
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTATTGTGTTTATTCTTTTTTAT
Found at i:8387641 original size:34 final size:34
Alignment explanation
Indices: 8387582--8387648 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
8387572 CACCATGACC
8387582 TTTGTTTTATTGTTTTTATTCTTTTTTATTTTTA
1 TTTGTTTTATTGTTTTTATTCTTTTTTATTTTTA
* * *
8387616 TTTG-TTTATTTTTTTTACTTTTTTTTTCTTTTT
1 TTTGTTTTATTGTTTTTA-TTCTTTTTTATTTTT
8387649 GGCTGCCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 12 0.41
34 17 0.59
ACGTcount: A:0.09, C:0.04, G:0.04, T:0.82
Consensus pattern (34 bp):
TTTGTTTTATTGTTTTTATTCTTTTTTATTTTTA
Found at i:8387794 original size:17 final size:17
Alignment explanation
Indices: 8387768--8387805 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8387758 ACCTGATTTG
8387768 ATTT-TTTTTTTTTGAA
1 ATTTGTTTTTTTTTGAA
*
8387784 ATTTGTTTTTTTTTTAA
1 ATTTGTTTTTTTTTGAA
8387801 ATTTG
1 ATTTG
8387806 ATGACTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (17 bp):
ATTTGTTTTTTTTTGAA
Found at i:8387794 original size:18 final size:17
Alignment explanation
Indices: 8387771--8387805 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
8387761 TGATTTGATT
8387771 TTTTTTTTTTGAAATTTG
1 TTTTTTTTTT-AAATTTG
8387789 TTTTTTTTTTAAATTTG
1 TTTTTTTTTTAAATTTG
8387806 ATGACTATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTTTTTTTTAAATTTG
Found at i:8390116 original size:4 final size:4
Alignment explanation
Indices: 8390107--8390131 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8390097 AGCAAACGTG
8390107 AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA A
8390132 TAGAAAAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:8390958 original size:47 final size:47
Alignment explanation
Indices: 8390894--8391004 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
8390884 GACATTGAGT
*
8390894 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * * *
8390941 CGATGAAGTACTTTGTGTACTATAATTTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
8390988 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
8391005 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:8393139 original size:46 final size:45
Alignment explanation
Indices: 8392986--8393250 Score: 180
Period size: 46 Copynumber: 5.7 Consensus size: 45
8392976 GGGATAAATT
* * *
8392986 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTGTCATATATGTGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC--ATCTG-GA
* * * * * *
8393036 GCTGATGTATTTCCCAGACATATCTTACACTAGC-A-CAACTCT-TA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC-A-TCTGGA
* * *
8393080 GCCGATGCGTGTCCCAGACACGTCTTATACTGGCTATC-TCTGCCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTG--GA
* **
8393126 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATCTGGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGGA
* * *
8393171 TGCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAATATG-
1 -GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTATCAT-CT-GGA
* **
8393220 GCTGATATATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
8393251 AGCGTACAAA
Statistics
Matches: 171, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
43 3 0.02
44 26 0.15
45 4 0.02
46 53 0.31
47 33 0.19
48 32 0.19
49 13 0.08
50 7 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGGA
Found at i:8393236 original size:94 final size:93
Alignment explanation
Indices: 8392985--8393253 Score: 280
Period size: 94 Copynumber: 2.9 Consensus size: 93
8392975 TGGGATAAAT
* * * *
8392985 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTGTCATATATGTGTGCTGATGTATTTCC
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTATCATA-ATATGAGCTGATGTATGTCC
* *
8393050 CAGACATATCTTACACTAGCACAACTCTTA
64 CAGACATGTCTTACACTAGCACAACTCTGA
* * * * ** * *
8393080 -GCCGATG-CGTGTCCCAGACACGTCTTATACTGGCTATC-T-CTGCCGAGCCGATGCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTATCATAAT-ATGAGCTGATGTATGTCCC
**
8393141 AGACATGTCTTACACTAGC-CCTCATCTGGA
65 AGACATGTCTTACACTAGCACAAC-TCT-GA
* *
8393171 TGCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAATATG-GCTGATATATGTCCC
1 TGCCGATGCCATGTCCCAGACATG-TCTTACACTGGCTATCATAATATGAGCTGATGTATGTCCC
8393235 AGACATGTCTTACACTAGC
65 AGACATGTCTTACACTAGC
8393254 GTACAAATCA
Statistics
Matches: 141, Mismatches: 25, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
89 3 0.02
90 34 0.24
91 2 0.01
92 22 0.16
93 25 0.18
94 52 0.37
95 2 0.01
96 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTATCATAATATGAGCTGATGTATGTCCCA
GACATGTCTTACACTAGCACAACTCTGA
Found at i:8393656 original size:30 final size:30
Alignment explanation
Indices: 8393600--8393656 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8393590 CAACTTTGGT
* *
8393600 AAAATGACCATTTTGCCCTTAGGCCTGTGC
1 AAAATGACCATTTTACCCCTAGGCCTGTGC
*
8393630 AAAATGACCATTTTACCCCTATGCCTG
1 AAAATGACCATTTTACCCCTAGGCCTG
8393657 AAAATTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (30 bp):
AAAATGACCATTTTACCCCTAGGCCTGTGC
Found at i:8409065 original size:48 final size:47
Alignment explanation
Indices: 8408829--8409187 Score: 260
Period size: 47 Copynumber: 7.7 Consensus size: 47
8408819 ATAAATTGTC
* *
8408829 GATGCCATGTCCCAGACATGATCTTACACTGGCTCTCAT-ATATGCGTACT
1 GATG-CATGTCCCAGACATG-TCTTACACTAGCTCTCATAATAT--GTGCT
* * * * * *
8408879 GATACATGTCCCAGACATGTTTTACACTAG--CACA-ACTCT-TAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGT-GCT
* * * *** * *
8408923 GATGCGTGTCCCAAACACGTCTTACACTAGCTATCTC-TGCCAAG-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC--TCTCATAATATGTGCT
* * * * *
8408970 GATGCATGTCCCAGACATGTCTTACTCTGGCACTCAT-CTCTGTGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGTGCT
*
8409016 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATATG-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATATGTGCT
* * * *
8409064 GATGCATGTCCCAAACATGTCTTACACTAGC-CT--TAGTCTGGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAT-G-TGCT
8409110 GATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATAATATG-GCT
1 GATG-CATGTCCCAGACATG-TCTTACACTAGCTCTCATAATATGTGCT
*
8409158 GATGCATGTCCTAGA-ATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
8409188 GCACAAATCA
Statistics
Matches: 244, Mismatches: 44, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
43 5 0.02
44 27 0.11
45 19 0.08
46 34 0.14
47 78 0.32
48 53 0.22
49 20 0.08
50 4 0.02
51 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGTGCT
Found at i:8409074 original size:94 final size:94
Alignment explanation
Indices: 8408828--8409187 Score: 389
Period size: 94 Copynumber: 3.9 Consensus size: 94
8408818 GATAAATTGT
* *
8408828 CGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCAT-ATATGCGTACTGATACATGTCCCA
1 CGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATAATATG-G--CTGATGCATGTCCCA
* *
8408892 GACATGTTTTACACTAGCA--CAACTCT-TAGC
63 GACATGTCTTACACTAGCACTCATCTCTGT-GC
* * * *** * *
8408922 CGATG-CGTGTCCCAAACACG-TCTTACACTAGCTATCTC-TGCCAAGGCCGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGATCTTACACTAGC--TCTCATAATATGGCTGATGCATGTCCCAG
* *
8408984 ACATGTCTTACTCTGGCACTCATCTCTGTGC
64 ACATGTCTTACACTAGCACTCATCTCTGTGC
* * * *
8409015 TGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCCAAAC
1 CGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCCAGAC
* *
8409080 ATGTCTTACACTAGC-CTTAGTCT-GGATGC
66 ATGTCTTACACTAGCACTCA-TCTCTG-TGC
*
8409109 CGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCTAGA-
1 CGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCCAGAC
8409173 ATGTCTTACACTAGC
66 ATGTCTTACACTAGC
8409188 GCACAAATCA
Statistics
Matches: 222, Mismatches: 33, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
91 29 0.13
92 11 0.05
93 49 0.22
94 121 0.55
95 12 0.05
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCATCTCTGTGC
Found at i:8409086 original size:141 final size:139
Alignment explanation
Indices: 8408828--8409187 Score: 369
Period size: 141 Copynumber: 2.6 Consensus size: 139
8408818 GATAAATTGT
* * * *
8408828 CGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCAT-ATATGCGTACTGATACATGTCCCA
1 CGATGCCATGTCCCAGACATGATCTTACACTAGCACTCATAATATG-G--CTGATGCATGTCCTA
* * * * * * *
8408892 GACATGTTTTACACTAG--CACA-ACTCTTAGCCGATGCGTGTCCCAAACACGTCTTACACTAG-
63 GA-ATGTCTTACACTAGCTCTCATAAT-ATGGCTGATGCATGTCCCAAACACGTCTTACACTAGC
8408953 C-TATCTCTGCCAAGGC
126 CTTA-CTCTG--AAGGC
* * * *
8408969 CGATG-CATGTCCCAGACATG-TCTTACTCTGGCACTCAT-CTCTGTGCTGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACATGATCTTACACTAGCACTCATAATATG-GCTGATG-CATGTCCTAG
*
8409031 ACATGGTCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCCAAACATGTCTTACACTAGCC
64 A-AT-GTCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCCAAACACGTCTTACACTAGCC
* * *
8409096 TTAGTCTGGATGC
127 TTACTCTGAAGGC
*
8409109 CGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCTAGAA
1 CGATGCCATGTCCCAGACATGATCTTACACTAGCACTCATAATATGGCTGATGCATGTCCTAGAA
8409174 TGTCTTACACTAGC
66 TGTCTTACACTAGC
8409188 GCACAAATCA
Statistics
Matches: 186, Mismatches: 23, Indels: 22
0.81 0.10 0.10
Matches are distributed among these distances:
137 5 0.03
138 13 0.07
139 44 0.24
140 25 0.13
141 65 0.35
142 29 0.16
143 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (139 bp):
CGATGCCATGTCCCAGACATGATCTTACACTAGCACTCATAATATGGCTGATGCATGTCCTAGAA
TGTCTTACACTAGCTCTCATAATATGGCTGATGCATGTCCCAAACACGTCTTACACTAGCCTTAC
TCTGAAGGC
Found at i:8410325 original size:83 final size:83
Alignment explanation
Indices: 8410225--8410391 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
8410215 GTACTAAAAT
8410225 CTAACTTTTGCCTTTTATGCGATTTATTCATTTTTCGAAATTGGATTAGAAATCGCTAAAATTAA
1 CTAACTTTTGCCTTTTATGCGATTTATTCATTTTTCGAAATTGGATTAGAAATCGCTAAAATTAA
8410290 CTTTCCAAAATTTACATG
66 CTTTCCAAAATTTACATG
8410308 CTAACTTTTGCCTTTTATGCGATTTATTCATTTTTCGAAATTGGATTAGAAATCGCTAAAATTAA
1 CTAACTTTTGCCTTTTATGCGATTTATTCATTTTTCGAAATTGGATTAGAAATCGCTAAAATTAA
8410373 CTTTCCAAAATTTACATG
66 CTTTCCAAAATTTACATG
8410391 C
1 C
8410392 ATTTATATAA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (83 bp):
CTAACTTTTGCCTTTTATGCGATTTATTCATTTTTCGAAATTGGATTAGAAATCGCTAAAATTAA
CTTTCCAAAATTTACATG
Found at i:8412225 original size:25 final size:26
Alignment explanation
Indices: 8412177--8412228 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
8412167 AAAAAAAGAG
8412177 AATGGTGAGTGTCCCCCCCCCCTTTGC
1 AATGGTGAGTGT-CCCCCCCCCTTTGC
8412204 AATGGTGAGTGT-CCCCCCCCTTTGC
1 AATGGTGAGTGTCCCCCCCCCTTTGC
8412229 CGTGAGTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 13 0.52
27 12 0.48
ACGTcount: A:0.12, C:0.38, G:0.23, T:0.27
Consensus pattern (26 bp):
AATGGTGAGTGTCCCCCCCCCTTTGC
Found at i:8413379 original size:27 final size:28
Alignment explanation
Indices: 8413323--8413392 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
8413313 AAATTTGTAC
8413323 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
8413351 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
8413378 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
8413393 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:8413403 original size:27 final size:27
Alignment explanation
Indices: 8413323--8413404 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
8413313 AAATTTGTAC
* *
8413323 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
8413351 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
8413378 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
8413405 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:8415580 original size:16 final size:16
Alignment explanation
Indices: 8415561--8415591 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8415551 GGCATTACGT
8415561 CTGCTAGGCACGAAGC
1 CTGCTAGGCACGAAGC
8415577 CTGCTAGGCACGAAG
1 CTGCTAGGCACGAAG
8415592 GCCCGAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.32, T:0.13
Consensus pattern (16 bp):
CTGCTAGGCACGAAGC
Found at i:8415638 original size:43 final size:43
Alignment explanation
Indices: 8415567--8415803 Score: 375
Period size: 43 Copynumber: 5.5 Consensus size: 43
8415557 ACGTCTGCTA
*
8415567 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* * * *
8415610 GGCATTACGTCTGCTAGGCACGAAGGCCCGAATACACATCAAC
1 GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* * *
8415653 GGCATGAAGCCTGCTAGGTACGAAGGCCCAAATACATATCACC
1 GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
8415696 GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* *
8415739 GGCACGAAGCCTACTAGGCACGAAGGCCCGAATACACATCACC
1 GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
*
8415782 GGCACGAAGCCTGCTAGGCACG
1 GGCATGAAGCCTGCTAGGCACG
8415804 GTATGAAGCC
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 176 1.00
ACGTcount: A:0.30, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
Found at i:8415845 original size:64 final size:64
Alignment explanation
Indices: 8415744--8415867 Score: 221
Period size: 64 Copynumber: 1.9 Consensus size: 64
8415734 TCACCGGCAC
*
8415744 GAAGCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGGTAT
1 GAAGCCTACTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGGTAT
* *
8415808 GAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCATGAAGCCTGCTAGGCACG
1 GAAGCCTACTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACG
8415868 AAGGCCGAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.30, C:0.31, G:0.27, T:0.12
Consensus pattern (64 bp):
GAAGCCTACTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGGTAT
Found at i:8415962 original size:38 final size:38
Alignment explanation
Indices: 8415875--8415978 Score: 136
Period size: 38 Copynumber: 2.7 Consensus size: 38
8415865 ACGAAGGCCG
* * * *
8415875 AATATAATACCAGCACTAGGCCTGCGGGATTTATCCCG
1 AATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
*
8415913 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
1 AATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
** *
8415951 AATATTTTACCAGCATGAAGCCTGCGGG
1 AATATAATACCAGCACGAAGCCTGCGGG
8415979 TCTTTAAGCC
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
AATATAATACCAGCACGAAGCCTGCGGGATTTAACCCA
Found at i:8424735 original size:16 final size:16
Alignment explanation
Indices: 8424714--8424745 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8424704 TATAATGAGG
8424714 AAAATCTAATTTATCA
1 AAAATCTAATTTATCA
8424730 AAAATCTAATTTATCA
1 AAAATCTAATTTATCA
8424746 TTCTCTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATCTAATTTATCA
Done.